Difference between revisions of "Team:NCTU Formosa/Wet Lab/Safety"

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       <div class="title"><p>Overview</p></div>
 
       <div class="title"><p>Overview</p></div>
 
       <div class="text">
 
       <div class="text">
         <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Our system provides a nice Biosimulator, bacterioicn, which shows the antimicrobial activity against specific strains. Since we plan to utilize our product into reality, we have to make sure that these peptides will not cause any safety problems and our modified bacteria will not be spread into the environment.</p>
+
         <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Our system provides a nice bio-simulator, bacterioicn, which shows the antimicrobial activity against specific strains. Since we plan to utilize our product into reality, we have to make sure that these peptides will not cause any safety problems and our modified bacteria will not be spread into the environment.</p>
 
         <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Bacteriocins are natural peptides and degrade quickly in the environment. Therefore, the most important thing we need to confirm is the modified <i>E.coli</i>. Thus, we cut into different aspects to ensure the safety of our product: the training of the experimenter, the level and the rule of the laboratory, and the safety of our final products using in the environment.</p>
 
         <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Bacteriocins are natural peptides and degrade quickly in the environment. Therefore, the most important thing we need to confirm is the modified <i>E.coli</i>. Thus, we cut into different aspects to ensure the safety of our product: the training of the experimenter, the level and the rule of the laboratory, and the safety of our final products using in the environment.</p>
 
       </div>
 
       </div>
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       <div class="title"><p>Safety Training and Laboratory</p></div>
 
       <div class="title"><p>Safety Training and Laboratory</p></div>
 
       <div class="text">
 
       <div class="text">
         <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Because the modified <i>E.coli</i> may be harmful when released to the environment, our experiments are done in the BSL2 laboratory. All of our team members receive several training courses and pass exams offered by Laboratory Management System before entering the laboratory. Each member must wear the lab coat, trousers, gloves, surgical masks, and shoes when carrying out experiments. Before and after the experiments, we have to use ethanol to clean the gloves and the experiment table. Everybody strictly follow the experimental procedure and never carry anything out of the lab.</p>
+
         <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Because the modified <i>E.coli</i> may be harmful when released to the environment, our experiments are done in the BSL2 laboratory. All of our team members received several training courses and passed exams offered by Laboratory Management System before entering the laboratory. Each member must wear the lab coat, trousers, gloves, surgical masks, and shoes when carrying out experiments. Before and after the experiments, we have to use ethanol to clean the gloves and the experiment table. Everybody strictly follow the experimental procedure and never carry anything out of the lab.</p>
 
       </div>
 
       </div>
 
     </div>
 
     </div>
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       <div class="title_3"><p>- High-temperature Sterilization Target on Modified <i>E.coli</i> ER2566 -</p></div>
 
       <div class="title_3"><p>- High-temperature Sterilization Target on Modified <i>E.coli</i> ER2566 -</p></div>
 
       <div class="text">
 
       <div class="text">
         <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;In the future, we are going to spray our Bio-stimulator into the environment. To make sure whether the bacteria contain anti-microbial peptide will not exist in the final product, we design the processing standards in the laboratory.</p>
+
         <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;In the future, we are going to spray our bio-stimulator into the environment. To make sure that the bacteria containing anti-microbial peptide will not exist in the final product, we designed the processing standards in the laboratory.</p>
 
       </div>
 
       </div>
 
       <div class="text">
 
       <div class="text">
 
         <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Bacteriocins are usually heat stable, we use high-temperature sterilization to double make sure our peptide solution does not contain any living <i>E. coli</i>. However, peptides may degrades after long time sterilization. To find out the best fitted time for sterilization, we boiled our bacteriocins for 0, 15, 30, and 45 minutes, and put them on LB Agar plate and cultured it at 37℃ for 16 hours.</p>
 
         <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Bacteriocins are usually heat stable, we use high-temperature sterilization to double make sure our peptide solution does not contain any living <i>E. coli</i>. However, peptides may degrades after long time sterilization. To find out the best fitted time for sterilization, we boiled our bacteriocins for 0, 15, 30, and 45 minutes, and put them on LB Agar plate and cultured it at 37℃ for 16 hours.</p>
         <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;These are the result of the plates, we can easily observe that the bacteria exists only in the sample that is not boiled. After fifteen minutes of sterilization, there are no alive bacterias exist.</p>
+
         <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;These are the result of the plates, and we can easily observe that the bacteria exists only in the sample that is not boiled. After fifteen minutes of sterilization, we observed that no alive bacterias exist.</p>
 
       </div>
 
       </div>
 
       <img src="https://static.igem.org/mediawiki/2018/e/e6/T--NCTU_Formosa--96_safety_plate.png" class="sds_1">
 
       <img src="https://static.igem.org/mediawiki/2018/e/e6/T--NCTU_Formosa--96_safety_plate.png" class="sds_1">
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       <div class="explanation">
 
       <div class="explanation">
 
         <svg class="icon" aria-hidden="true" data-prefix="fas" data-icon="arrow-circle-up" class="svg-inline--fa fa-arrow-circle-up fa-w-16" role="img" xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512"><path fill="currentColor" d="M8 256C8 119 119 8 256 8s248 111 248 248-111 248-248 248S8 393 8 256zm143.6 28.9l72.4-75.5V392c0 13.3 10.7 24 24 24h16c13.3 0 24-10.7 24-24V209.4l72.4 75.5c9.3 9.7 24.8 9.9 34.3.4l10.9-11c9.4-9.4 9.4-24.6 0-33.9L273 107.7c-9.4-9.4-24.6-9.4-33.9 0L106.3 240.4c-9.4 9.4-9.4 24.6 0 33.9l10.9 11c9.6 9.5 25.1 9.3 34.4-.4z"></path></svg>
 
         <svg class="icon" aria-hidden="true" data-prefix="fas" data-icon="arrow-circle-up" class="svg-inline--fa fa-arrow-circle-up fa-w-16" role="img" xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512"><path fill="currentColor" d="M8 256C8 119 119 8 256 8s248 111 248 248-111 248-248 248S8 393 8 256zm143.6 28.9l72.4-75.5V392c0 13.3 10.7 24 24 24h16c13.3 0 24-10.7 24-24V209.4l72.4 75.5c9.3 9.7 24.8 9.9 34.3.4l10.9-11c9.4-9.4 9.4-24.6 0-33.9L273 107.7c-9.4-9.4-24.6-9.4-33.9 0L106.3 240.4c-9.4 9.4-9.4 24.6 0 33.9l10.9 11c9.6 9.5 25.1 9.3 34.4-.4z"></path></svg>
         Figure 1: LB Agar plate of boiling test to Enterocin 96+intein+CBD(35.9kDa) and Enteroicin B+intein+CBD(35.5kDa)
+
         Figure 1: LB Agar plate of boiling test to Enterocin 96 + intein + CBD(35.9kDa) and Enteroicin B + intein + CBD(35.5kDa)
 
       </div>
 
       </div>
 
       <img src="https://static.igem.org/mediawiki/2018/a/a2/T--NCTU_Formosa--Bov_safety_plate.png" class="sds_1">
 
       <img src="https://static.igem.org/mediawiki/2018/a/a2/T--NCTU_Formosa--Bov_safety_plate.png" class="sds_1">
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       <div class="explanation">
 
       <div class="explanation">
 
         <svg class="icon" aria-hidden="true" data-prefix="fas" data-icon="arrow-circle-up" class="svg-inline--fa fa-arrow-circle-up fa-w-16" role="img" xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512"><path fill="currentColor" d="M8 256C8 119 119 8 256 8s248 111 248 248-111 248-248 248S8 393 8 256zm143.6 28.9l72.4-75.5V392c0 13.3 10.7 24 24 24h16c13.3 0 24-10.7 24-24V209.4l72.4 75.5c9.3 9.7 24.8 9.9 34.3.4l10.9-11c9.4-9.4 9.4-24.6 0-33.9L273 107.7c-9.4-9.4-24.6-9.4-33.9 0L106.3 240.4c-9.4 9.4-9.4 24.6 0 33.9l10.9 11c9.6 9.5 25.1 9.3 34.4-.4z"></path></svg>
 
         <svg class="icon" aria-hidden="true" data-prefix="fas" data-icon="arrow-circle-up" class="svg-inline--fa fa-arrow-circle-up fa-w-16" role="img" xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512"><path fill="currentColor" d="M8 256C8 119 119 8 256 8s248 111 248 248-111 248-248 248S8 393 8 256zm143.6 28.9l72.4-75.5V392c0 13.3 10.7 24 24 24h16c13.3 0 24-10.7 24-24V209.4l72.4 75.5c9.3 9.7 24.8 9.9 34.3.4l10.9-11c9.4-9.4 9.4-24.6 0-33.9L273 107.7c-9.4-9.4-24.6-9.4-33.9 0L106.3 240.4c-9.4 9.4-9.4 24.6 0 33.9l10.9 11c9.6 9.5 25.1 9.3 34.4-.4z"></path></svg>
         Figure 2: LB Agar plate of boiling test to Bovicin HJ50+intein +CBD(34.25kDa) and Durancin +intein+CBD(35.3kDa)
+
         Figure 2: LB Agar plate of boiling test to Bovicin HJ50 + intein + CBD(34.25kDa) and Durancin + intein + CBD(35.3kDa)
 
       </div>
 
       </div>
 
       <img src="https://static.igem.org/mediawiki/2018/1/12/T--NCTU_Formosa--Lac_safety_plate.png" class="sds_1">
 
       <img src="https://static.igem.org/mediawiki/2018/1/12/T--NCTU_Formosa--Lac_safety_plate.png" class="sds_1">
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       <div class="explanation">
 
       <div class="explanation">
 
         <svg class="icon" aria-hidden="true" data-prefix="fas" data-icon="arrow-circle-up" class="svg-inline--fa fa-arrow-circle-up fa-w-16" role="img" xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512"><path fill="currentColor" d="M8 256C8 119 119 8 256 8s248 111 248 248-111 248-248 248S8 393 8 256zm143.6 28.9l72.4-75.5V392c0 13.3 10.7 24 24 24h16c13.3 0 24-10.7 24-24V209.4l72.4 75.5c9.3 9.7 24.8 9.9 34.3.4l10.9-11c9.4-9.4 9.4-24.6 0-33.9L273 107.7c-9.4-9.4-24.6-9.4-33.9 0L106.3 240.4c-9.4 9.4-9.4 24.6 0 33.9l10.9 11c9.6 9.5 25.1 9.3 34.4-.4z"></path></svg>
 
         <svg class="icon" aria-hidden="true" data-prefix="fas" data-icon="arrow-circle-up" class="svg-inline--fa fa-arrow-circle-up fa-w-16" role="img" xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512"><path fill="currentColor" d="M8 256C8 119 119 8 256 8s248 111 248 248-111 248-248 248S8 393 8 256zm143.6 28.9l72.4-75.5V392c0 13.3 10.7 24 24 24h16c13.3 0 24-10.7 24-24V209.4l72.4 75.5c9.3 9.7 24.8 9.9 34.3.4l10.9-11c9.4-9.4 9.4-24.6 0-33.9L273 107.7c-9.4-9.4-24.6-9.4-33.9 0L106.3 240.4c-9.4 9.4-9.4 24.6 0 33.9l10.9 11c9.6 9.5 25.1 9.3 34.4-.4z"></path></svg>
         Figure 3: LB Agar plate of boiling test to Lacticin+intein+CBD(33.9kDa) and Leucocyclicin Q+intein+CBD(34.4kDa)
+
         Figure 3: LB Agar plate of boiling test to Lacticin + intein + CBD(33.9kDa) and Leucocyclicin Q + intein + CBD(34.4kDa)
 
       </div>
 
       </div>
 
       <div class="text">
 
       <div class="text">
         <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;We also run SDS-PAGE to check the degradation of bacterioicins. The result shows that the peptide doesn’t degrade after boiling in 45 minutes.</p>
+
         <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;We also run SDS-PAGE to check the degradation of bacterioicins. The result showed that the peptide didn’t degrade after boiling in 45 minutes.</p>
 
       </div>
 
       </div>
 
       <img src="https://static.igem.org/mediawiki/2018/5/52/T--NCTU_Formosa--96_B_safetySDS.png" class="sds">
 
       <img src="https://static.igem.org/mediawiki/2018/5/52/T--NCTU_Formosa--96_B_safetySDS.png" class="sds">
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       <div class="explanation">
 
       <div class="explanation">
 
         <svg class="icon" aria-hidden="true" data-prefix="fas" data-icon="arrow-circle-up" class="svg-inline--fa fa-arrow-circle-up fa-w-16" role="img" xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512"><path fill="currentColor" d="M8 256C8 119 119 8 256 8s248 111 248 248-111 248-248 248S8 393 8 256zm143.6 28.9l72.4-75.5V392c0 13.3 10.7 24 24 24h16c13.3 0 24-10.7 24-24V209.4l72.4 75.5c9.3 9.7 24.8 9.9 34.3.4l10.9-11c9.4-9.4 9.4-24.6 0-33.9L273 107.7c-9.4-9.4-24.6-9.4-33.9 0L106.3 240.4c-9.4 9.4-9.4 24.6 0 33.9l10.9 11c9.6 9.5 25.1 9.3 34.4-.4z"></path></svg>
 
         <svg class="icon" aria-hidden="true" data-prefix="fas" data-icon="arrow-circle-up" class="svg-inline--fa fa-arrow-circle-up fa-w-16" role="img" xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512"><path fill="currentColor" d="M8 256C8 119 119 8 256 8s248 111 248 248-111 248-248 248S8 393 8 256zm143.6 28.9l72.4-75.5V392c0 13.3 10.7 24 24 24h16c13.3 0 24-10.7 24-24V209.4l72.4 75.5c9.3 9.7 24.8 9.9 34.3.4l10.9-11c9.4-9.4 9.4-24.6 0-33.9L273 107.7c-9.4-9.4-24.6-9.4-33.9 0L106.3 240.4c-9.4 9.4-9.4 24.6 0 33.9l10.9 11c9.6 9.5 25.1 9.3 34.4-.4z"></path></svg>
         Figure 6: SDS-PAGE gel and the concentrations of boiling test to bacteriocins.<p>(E) Lacticin+intein+CBD(33.9kDa)</p>
+
         Figure 6: SDS-PAGE gel and the concentrations of boiling test to bacteriocins.<p>(E) Lacticin + intein + CBD(33.9kDa)</p>
 
       </div>
 
       </div>
 
       <div class="explanation">
 
       <div class="explanation">
 
         <svg class="icon" aria-hidden="true" data-prefix="fas" data-icon="arrow-circle-up" class="svg-inline--fa fa-arrow-circle-up fa-w-16" role="img" xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512"><path fill="currentColor" d="M8 256C8 119 119 8 256 8s248 111 248 248-111 248-248 248S8 393 8 256zm143.6 28.9l72.4-75.5V392c0 13.3 10.7 24 24 24h16c13.3 0 24-10.7 24-24V209.4l72.4 75.5c9.3 9.7 24.8 9.9 34.3.4l10.9-11c9.4-9.4 9.4-24.6 0-33.9L273 107.7c-9.4-9.4-24.6-9.4-33.9 0L106.3 240.4c-9.4 9.4-9.4 24.6 0 33.9l10.9 11c9.6 9.5 25.1 9.3 34.4-.4z"></path></svg>
 
         <svg class="icon" aria-hidden="true" data-prefix="fas" data-icon="arrow-circle-up" class="svg-inline--fa fa-arrow-circle-up fa-w-16" role="img" xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512"><path fill="currentColor" d="M8 256C8 119 119 8 256 8s248 111 248 248-111 248-248 248S8 393 8 256zm143.6 28.9l72.4-75.5V392c0 13.3 10.7 24 24 24h16c13.3 0 24-10.7 24-24V209.4l72.4 75.5c9.3 9.7 24.8 9.9 34.3.4l10.9-11c9.4-9.4 9.4-24.6 0-33.9L273 107.7c-9.4-9.4-24.6-9.4-33.9 0L106.3 240.4c-9.4 9.4-9.4 24.6 0 33.9l10.9 11c9.6 9.5 25.1 9.3 34.4-.4z"></path></svg>
         Figure 7: SDS-PAGE gel and the concentrations of boiling test to bacteriocins.<p>(F) Leucocyclicin Q+intein+CBD(34.4kDa)</p>
+
         Figure 7: SDS-PAGE gel and the concentrations of boiling test to bacteriocins.<p>(F) Leucocyclicin Q + intein + CBD(34.4kDa)</p>
 
       </div>
 
       </div>
 
     </div>
 
     </div>

Revision as of 15:57, 17 October 2018

Navigation Bar Safety

Overview

     Our system provides a nice bio-simulator, bacterioicn, which shows the antimicrobial activity against specific strains. Since we plan to utilize our product into reality, we have to make sure that these peptides will not cause any safety problems and our modified bacteria will not be spread into the environment.

     Bacteriocins are natural peptides and degrade quickly in the environment. Therefore, the most important thing we need to confirm is the modified E.coli. Thus, we cut into different aspects to ensure the safety of our product: the training of the experimenter, the level and the rule of the laboratory, and the safety of our final products using in the environment.

Safety Training and Laboratory

     Because the modified E.coli may be harmful when released to the environment, our experiments are done in the BSL2 laboratory. All of our team members received several training courses and passed exams offered by Laboratory Management System before entering the laboratory. Each member must wear the lab coat, trousers, gloves, surgical masks, and shoes when carrying out experiments. Before and after the experiments, we have to use ethanol to clean the gloves and the experiment table. Everybody strictly follow the experimental procedure and never carry anything out of the lab.

Confirm the Safety of Bio-stimulator

- High-temperature Sterilization Target on Modified E.coli ER2566 -

     In the future, we are going to spray our bio-stimulator into the environment. To make sure that the bacteria containing anti-microbial peptide will not exist in the final product, we designed the processing standards in the laboratory.

     Bacteriocins are usually heat stable, we use high-temperature sterilization to double make sure our peptide solution does not contain any living E. coli. However, peptides may degrades after long time sterilization. To find out the best fitted time for sterilization, we boiled our bacteriocins for 0, 15, 30, and 45 minutes, and put them on LB Agar plate and cultured it at 37℃ for 16 hours.

     These are the result of the plates, and we can easily observe that the bacteria exists only in the sample that is not boiled. After fifteen minutes of sterilization, we observed that no alive bacterias exist.

Figure 1: LB Agar plate of boiling test to Enterocin 96 + intein + CBD(35.9kDa) and Enteroicin B + intein + CBD(35.5kDa)
Figure 2: LB Agar plate of boiling test to Bovicin HJ50 + intein + CBD(34.25kDa) and Durancin + intein + CBD(35.3kDa)
Figure 3: LB Agar plate of boiling test to Lacticin + intein + CBD(33.9kDa) and Leucocyclicin Q + intein + CBD(34.4kDa)

     We also run SDS-PAGE to check the degradation of bacterioicins. The result showed that the peptide didn’t degrade after boiling in 45 minutes.

Figure 4: SDS-PAGE for Enterocin 96 and Enteroicin B.


(A) Boil for 0 minute. (B) Boil for 15 minutes. (C) Boil for 30 minutes. (D) Boil for 45 minutes.

Figure 5: SDS-PAGE for Bovicin HJ50 and Durancin TW-49M.


(A) Boil for 0 minute. (B) Boil for 15 minutes. (C) Boil for 30 minutes. (D) Boil for 45 minutes.

Figure 6: SDS-PAGE gel and the concentrations of boiling test to bacteriocins.

(E) Lacticin + intein + CBD(33.9kDa)

Figure 7: SDS-PAGE gel and the concentrations of boiling test to bacteriocins.

(F) Leucocyclicin Q + intein + CBD(34.4kDa)

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