Difference between revisions of "Team:NCTU Formosa/Notebook"

 
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Line 161: Line 161:
 
.menu {
 
.menu {
 
margin-left:10%;
 
margin-left:10%;
−
   margin-top:10vh;
+
   margin-top:3vw;
 
width: 35%;
 
width: 35%;
 
position: relative;
 
position: relative;
 
   font-family: 'Myriad Pro';
 
   font-family: 'Myriad Pro';
 
   display: inline-block;
 
   display: inline-block;
 +
  float: left;
 
}
 
}
  
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     margin-left: 10%;
 
     margin-left: 10%;
 
     position: relative;
 
     position: relative;
−
     margin-top: 50px;
+
     margin-top: 2vw;
 
   }
 
   }
 
}
 
}
Line 347: Line 348:
 
     width: 35%;
 
     width: 35%;
 
     display: inline-block;
 
     display: inline-block;
 +
    margin-top: 3vw;
 
}
 
}
 
.notebook_wrapper{
 
.notebook_wrapper{
Line 403: Line 405:
 
     padding-bottom:8px;
 
     padding-bottom:8px;
 
     padding-left:5px !important;
 
     padding-left:5px !important;
 +
}
 +
 +
.lab{
 +
  width: 15%;
 +
  position: absolute;
 +
  left: 73%;
 +
  top: 30vw;
 +
  transition-duration: 0.4s;
 +
}
 +
 +
.protocol{
 +
  width: 15%;
 +
  position: absolute;
 +
  left: 73%;
 +
  top: 37vw;
 +
  transition-duration: 0.4s;
 +
}
 +
 +
.lab:hover{
 +
  transform: scale(1.1);
 +
}
 +
 +
.protocol:hover{
 +
  transform: scale(1.1);
 
}
 
}
  
 
</style>
 
</style>
 
</head>
 
</head>
 +
 
<body>
 
<body>
 
     <div class="img-container">
 
     <div class="img-container">
 
         <img src="https://static.igem.org/mediawiki/2018/3/31/T--NCTU_Formosa--Notebook_cover.png" width="100%">
 
         <img src="https://static.igem.org/mediawiki/2018/3/31/T--NCTU_Formosa--Notebook_cover.png" width="100%">
 +
        <a href="https://2018.igem.org/Team:NCTU_Formosa/Notebook"><img src="https://static.igem.org/mediawiki/2018/4/4c/T--NCTU_Formosa--Notebook_Lab_Note.png" class="lab"></a>
 +
        <a href="https://2018.igem.org/Team:NCTU_Formosa/Protocol"><img src="https://static.igem.org/mediawiki/2018/4/4f/T--NCTU_Formosa--Notebook_Lab_protocol.png" class="protocol"></a>
 
     </div>
 
     </div>
 
<!-- Contenedor principal -->
 
<!-- Contenedor principal -->
Line 681: Line 710:
 
         <p class="note-title">Cloning</p>
 
         <p class="note-title">Cloning</p>
 
         <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
         <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
             <li class="list">Received and resuspended of the IDT basic part</li>
+
             <li class="list">Received and resuspended of the IDT DNA fragments</li>
 
             <li class="list">Sample</li>
 
             <li class="list">Sample</li>
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
                       <li class="list">Enterocin A</li>
+
                       <li class="list">GS linker+αS1-casein</li>
 
                       <li class="list">Enterocin B</li>
 
                       <li class="list">Enterocin B</li>
 
                       <li class="list">Enterocin 96</li>
 
                       <li class="list">Enterocin 96</li>
 
                       <li class="list">Bovicin HJ50</li>
 
                       <li class="list">Bovicin HJ50</li>
−
                       <li class="list">Duracin TW49M</li>
+
                       <li class="list">Durancin TW49M</li>
 
                       <li class="list">Lacticin Z</li>
 
                       <li class="list">Lacticin Z</li>
 
                       <li class="list">Leucocyclicin Q</li>
 
                       <li class="list">Leucocyclicin Q</li>
−
                      <li class="list">Subtilosin</li>
 
 
                 </ul>
 
                 </ul>
 +
        </ul>
 +
        <p class="note-title"></p>
 +
        <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
            <li class="list">Received and resuspended of the IDT DNA fragments</li>
 
         </ul>
 
         </ul>
 
     </article>
 
     </article>
Line 701: Line 733:
 
     <article id="July-3" class="note-item">
 
     <article id="July-3" class="note-item">
 
         <h2>July 3</h2><hr>
 
         <h2>July 3</h2><hr>
−
         <p class="note-title">Growth curve exp</p>
+
         <p class="note-title">Growth curve exp.</p>
 
         <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
         <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
             <li class="list">Observe the growth population of Bacillis subtilis in different temperature Condition: 37°C, 32°C, 27°C</li>
+
             <li class="list">Observe the growth population of <i>Bacillus subtilis</i> in different temperature Condition: 37°C, 32°C, 27°C</li>
 
         </ul>
 
         </ul>
 
     </article>
 
     </article>
 
     <article id="July-4" class="note-item">
 
     <article id="July-4" class="note-item">
 
         <h2>July 4</h2><hr>
 
         <h2>July 4</h2><hr>
−
         <p class="note-title">None</p>
+
         <p class="note-title">Cloning gene of Curcumin bio-sensor</p>
 +
        <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
            <li class="list">Doing the PCR and clean-up to amplify the DNA fragment. Digesting pET30a backbone and ligating it with αS1-casein+GS linker and T7 promoter.</li>
 +
            <li class="list">Sample</li>
 +
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
                      <li class="list">pET30a backbone</li>
 +
                      <li class="list">DNA segment of αS1-casein+GS linker and T7 promoter.</li>
 +
                </ul>
 +
        </ul>
 
     </article>
 
     </article>
  
 
     <article id="July-5" class="note-item">
 
     <article id="July-5" class="note-item">
 
         <h2>July 5</h2><hr>
 
         <h2>July 5</h2><hr>
−
         <p class="note-title">None</p>
+
         <p class="note-title">Cloning gene of Curcumin bio-sensor Expression</p>
 +
        <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
            <li class="list">Transforming the ligation product of the Curcumin bio-sensor into <i>E. coli</i> BL21 DE3 Cultivating the culture, preparing <i>E. coli</i> culture glycerol stocks, and doing the mini preparation.</li>
 +
            <li class="list">Sample</li>
 +
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
                      <li class="list">fresh colony of <i>E. coli</i> BL21 DE3 carrying the backbone pET30a containing αS1-casein + GS linker and T7 promotor gene from an overnight plate</li>
 +
                </ul>
 +
        </ul>
 
     </article>
 
     </article>
  
Line 722: Line 769:
 
     <article id="July-7" class="note-item">
 
     <article id="July-7" class="note-item">
 
         <h2>July 7</h2><hr>
 
         <h2>July 7</h2><hr>
−
         <p class="note-title">None</p>
+
         <p class="note-title">Expression of αS1-casein</p>
 +
        <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
            <li class="list">Cultivating <i>E. coli</i> culture containing target protein αS1-casein from the <i>E. coli</i> glycerol stock and inducing it with IPTG to produce αS1-casein.</li>
 +
            <li class="list">Purifying the protein by His-Tag.</li>
 +
        </ul>
 
     </article>
 
     </article>
 
     <article id="July-8" class="note-item">
 
     <article id="July-8" class="note-item">
Line 728: Line 779:
 
         <p class="note-title">Growth curve exp</p>
 
         <p class="note-title">Growth curve exp</p>
 
         <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
         <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
             <li class="list">Observe the growth population of Bacillis subtilis in different pH Condition: pH = 4, 5, 6, 7, 8</li>
+
             <li class="list">Observe the growth population of <i>Bacillus subtilis</i> in different pH Condition: pH = 4, 5, 6, 7, 8</li>
 
         </ul>
 
         </ul>
 
     </article>
 
     </article>
Line 739: Line 790:
 
     <article id="July-10" class="note-item">
 
     <article id="July-10" class="note-item">
 
         <h2>July 10</h2><hr>
 
         <h2>July 10</h2><hr>
−
         <p class="note-title">None</p>
+
         <p class="note-title">Chip Production</p>
 +
        <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
            <li class="list">Preparing 18 chips for bio-sensor sensitivity pretest<br>
 +
                            1. Dip the gold chips in 10mM Mua, RT for 4hrs.<br>
 +
                            2. Wash the chips with 95% EtOH three times and dry.<br>
 +
                            3. Add EDC+NHS mixture (100+100mM in DDW) on chips, RT for 1hrs.<br>
 +
                            4. DDW rinse the chips and dry.<br>
 +
                            5. Add αS1-casein on chips, RT for 1hrs.<br>
 +
                            6. Wash with PBS three times and dry.<br>
 +
                            6. Dip the chips in blocking solution, RT for 1.5hrs.<br>
 +
                            7. Wash with PBS three times and dry.</li>
 +
        </ul>
 
     </article>
 
     </article>
  
 
     <article id="July-11" class="note-item">
 
     <article id="July-11" class="note-item">
 
         <h2>July 11</h2><hr>
 
         <h2>July 11</h2><hr>
−
         <p class="note-title">None</p>
+
         <p class="note-title">Bio-sensor sensitivity pretest </p>
 +
        <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
            <li class="list">Using DPV(Differential Pulse Voltammetry) to check whether our bio-sensor can detect curcumin.<br>
 +
                            1. Add the diluted curcumin samples on our bio-sensor to react for 30min.<br>
 +
                            2. Rinse with wash buffer and dry the chips.<br>
 +
                            3. Wash the reference and counter electrodes with DDW, and dry them.<br>
 +
                            4. Set up the three electrodes system within electrocheFunctional analysisal cell.<br>
 +
                            5. Use the prototype of electrocheFunctional analysisal machine to measure the DPV method</li>
 +
        </ul>
 
     </article>
 
     </article>
  
 
     <article id="July-12" class="note-item">
 
     <article id="July-12" class="note-item">
 
         <h2>July 12</h2><hr>
 
         <h2>July 12</h2><hr>
−
         <p class="note-title">None</p>
+
         <p class="note-title">Bio-sensor sensitivity assay –Determine Standard Curve and Create the Formula</p>
 +
        <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
            <li class="list">Detecting the diluted standard curcumin samples by curcumin bio-sensor and made the standard curve and doing the polynomial curve fitting.</li>
 +
        </ul>
 
     </article>
 
     </article>
  
 
     <article id="July-13" class="note-item">
 
     <article id="July-13" class="note-item">
 
         <h2>July 13</h2><hr>
 
         <h2>July 13</h2><hr>
−
         <p class="note-title">None</p>
+
         <p class="note-title">Bio-sensor sensitivity assay -Detecting the real Samples from Turmeric Root</p>
 +
        <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
            <li class="list">Milling the turmeric root and dividing the powder into two groups. One of them was added with extraction buffer but not underwent the extraction protocol, and the other was added with extraction buffer but underwent the extraction process</li>
 +
        </ul>
 
     </article>
 
     </article>
  
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         <p class="note-title">Expression</p>
 
         <p class="note-title">Expression</p>
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
             <li class="list">repared competent cell E. coli ER2566</li>
+
             <li class="list">Preparing competent cell <i>E. coli</i> ER2566</li>
 
           </ul>
 
           </ul>
  
 
       <p class="note-title">Growth curve exp</p>
 
       <p class="note-title">Growth curve exp</p>
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
               <li class="list">Observe the growth population of Bacillis subtilis in different salinity Condition: 0.17M, 0.25M, 0.5M, 0.75M, 1.0M</li>
+
               <li class="list">Observe the growth population of <i>Bacillus subtilis</i> in different salinity condition: 0.17M, 0.25M, 0.5M, 0.75M, 1.0M</li>
−
              <li class="list">Sample</li>
+
 
           </ul>
 
           </ul>
 
     </article>
 
     </article>
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       <p class="note-title">Cloning</p>
 
       <p class="note-title">Cloning</p>
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
               <li class="list">Transformation of ligation products (Transform into E. coli DH5α)</li>
+
               <li class="list">Transformation of ligation products (Transform into <i>E. coli</i> DH5α)</li>
 
               <li class="list">Taq PCR (PCR of ligation products to amplify insert gene)</li>
 
               <li class="list">Taq PCR (PCR of ligation products to amplify insert gene)</li>
 
               <li class="list">Electrophoresis (To check PCR products)</li>
 
               <li class="list">Electrophoresis (To check PCR products)</li>
Line 836: Line 911:
 
       <p class="note-title">Cloning</p>
 
       <p class="note-title">Cloning</p>
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
               <li class="list">PurposeL: Sequencing plasmid</li>
+
               <li class="list">Sequencing plasmid</li>
 
               <li class="list">Sample</li>
 
               <li class="list">Sample</li>
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
Line 847: Line 922:
 
     <article id="July-21" class="note-item">
 
     <article id="July-21" class="note-item">
 
         <h2>July 21</h2><hr>
 
         <h2>July 21</h2><hr>
−
       <p class="note-title">Cultivation</p>
+
       <p class="note-title">None</p>
 
     </article>
 
     </article>
  
Line 869: Line 944:
 
       <p class="note-title">Cloning</p>
 
       <p class="note-title">Cloning</p>
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
               <li class="list">Transformation of ligation products (Transform into E. coli DH5α)</li>
+
               <li class="list">Transformation of ligation products (Transform into <i>E. coli</i> DH5α)</li>
 
               <li class="list">Taq PCR (PCR of ligation products to amplify insert gene)</li>
 
               <li class="list">Taq PCR (PCR of ligation products to amplify insert gene)</li>
 
               <li class="list">Electrophoresis (To check PCR products)</li>
 
               <li class="list">Electrophoresis (To check PCR products)</li>
Line 923: Line 998:
 
       <p class="note-title">Expression</p>
 
       <p class="note-title">Expression</p>
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
               <li class="list">Transformation (Transform correct plasmid into E. coli ER2566)</li>
+
               <li class="list">Transformation (Transform correct plasmid into <i>E. coli</i> ER2566)</li>
 
                     <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
                     <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
                         <li class="list">Leucocyclicin Q + pTXB1</li>
 
                         <li class="list">Leucocyclicin Q + pTXB1</li>
Line 965: Line 1,040:
 
       <p class="note-title">Expression</p>
 
       <p class="note-title">Expression</p>
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
               <li class="list">Purepose: Transformation (Transform correct plasmid into E. coli ER2566)</li>
+
               <li class="list">Transformation (Transform correct plasmid into <i>E. coli</i> ER2566)</li>
 
               <li class="list">sample</li>
 
               <li class="list">sample</li>
 
                     <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
                     <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
Line 978: Line 1,053:
 
         <p class="note-title">Expression</p>
 
         <p class="note-title">Expression</p>
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
               <li class="list">Purepose: Cultivation (Cultivation of E. coli ER2566 colonies for IPTG induction)</li>
+
               <li class="list">Cultivation (Cultivation of <i>E. coli</i> ER2566 colonies for IPTG induction)</li>
−
               <li class="list">Purepose: IPTG Induction (To test the OD levels of E. coli ER2566 to induce)Condition: OD = 0.5, 1.3</li>
+
               <li class="list">IPTG Induction (To test the O.D. levels of <i>E. coli</i> ER2566 to induce)Condition: O.D. = 0.5, 1.3</li>
 
               <li class="list">sample</li>
 
               <li class="list">sample</li>
 
                     <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
                     <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
Line 990: Line 1,065:
 
         <p class="note-title">Expression</p>
 
         <p class="note-title">Expression</p>
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
               <li class="list">Purepose: SDS PAGE (To check the protein production after induction)</li>
+
               <li class="list">SDS-PAGE (To check the protein production after induction)</li>
 
               <li class="list">sample</li>
 
               <li class="list">sample</li>
 
                     <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
                     <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
Line 1,013: Line 1,088:
 
         <p class="note-title">Cloning</p>
 
         <p class="note-title">Cloning</p>
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
               <li class="list">Purepose: Amplify the insert gene (Pfu PCR)</li>
+
               <li class="list">Amplify the insert gene (Pfu PCR)</li>
−
               <li class="list">Purepose: Electrophoresis (To check PCR products)</li>
+
               <li class="list">Electrophoresis (To check PCR products)</li>
 
               <li class="list">sample</li>
 
               <li class="list">sample</li>
 
                     <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
                     <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
                        <li class="list">Enterocin A</li>
 
 
                         <li class="list">Enterocin B</li>
 
                         <li class="list">Enterocin B</li>
 
                         <li class="list">Enterocin 96 </li>
 
                         <li class="list">Enterocin 96 </li>
−
                         <li class="list">Duracin TW49M </li>
+
                         <li class="list">Durancin TW49M </li>
−
                        <li class="list">Subtilosin</li>
+
 
                     </ul>
 
                     </ul>
 
           </ul>
 
           </ul>
Line 1,029: Line 1,102:
 
         <p class="note-title">Cloning</p>
 
         <p class="note-title">Cloning</p>
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
               <li class="list">Purepose: Digestion of PCR products (Including insert and backbone pTXB1)</li>
+
               <li class="list">Digestion of PCR products (Including insert and backbone pTXB1)</li>
−
               <li class="list">Purepose: Ligation of digestion products (Ligase the DNA fragment into backbone pTXB1)</li>
+
               <li class="list">Ligation of digestion products (Ligase the DNA fragment into backbone pTXB1)</li>
−
               <li class="list">Purepose: Transformation of ligation products (Transform into E. coli DH5α)</li>
+
               <li class="list">Transformation of ligation products (Transform into <i>E. coli</i> DH5α)</li>
 
               <li class="list">sample</li>
 
               <li class="list">sample</li>
 
                     <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
                     <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
                        <li class="list">Enterocin A + pTXB1</li>
 
 
                         <li class="list">Enterocin B + pTXB1</li>
 
                         <li class="list">Enterocin B + pTXB1</li>
 
                         <li class="list">Enterocin 96  + pTXB1</li>
 
                         <li class="list">Enterocin 96  + pTXB1</li>
−
                         <li class="list">Duracin TW49M + pTXB1</li>
+
                         <li class="list">Durancin TW-49M + pTXB1</li>
−
                        <li class="list">Subtilosin + pTXB1</li>
+
 
                     </ul>
 
                     </ul>
 
           </ul>
 
           </ul>
 
         <p class="note-title">Growth curve</p>
 
         <p class="note-title">Growth curve</p>
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
               <li class="list">Purepose: Observe the growth of Bacillus subtilis in different temperature, pH, salinityCondition:</li>
+
               <li class="list">Observe the growth of <i>Bacillus subtilis</i> in different temperature, pH, salinityCondition:</li>
 
               <li class="list">1.Temp: 37°C , pH:7 , salinity: 0.17M</li>
 
               <li class="list">1.Temp: 37°C , pH:7 , salinity: 0.17M</li>
 
               <li class="list">2.Temp: 30°C , pH:9 , salinity: 0.5M</li>
 
               <li class="list">2.Temp: 30°C , pH:9 , salinity: 0.5M</li>
Line 1,053: Line 1,124:
 
         <p class="note-title">Cloning</p>
 
         <p class="note-title">Cloning</p>
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
               <li class="list">Purepose: Taq PCR (PCR of ligation products to amplify insert gene)</li>
+
               <li class="list">Taq PCR (PCR of ligation products to amplify insert gene)</li>
−
               <li class="list">Purepose: Electrophoresis (To check PCR products)</li>
+
               <li class="list">Electrophoresis (To check PCR products)</li>
 
               <li class="list">sample</li>
 
               <li class="list">sample</li>
 
                     <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
                     <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
                        <li class="list">Enterocin A + pTXB1</li>
 
 
                         <li class="list">Enterocin B + pTXB1</li>
 
                         <li class="list">Enterocin B + pTXB1</li>
 
                         <li class="list">Enterocin 96  + pTXB1</li>
 
                         <li class="list">Enterocin 96  + pTXB1</li>
−
                         <li class="list">Duracin TW49M + pTXB1</li>
+
                         <li class="list">Durancin TW-49M + pTXB1</li>
−
                        <li class="list">Subtilosin + pTXB1</li>
+
 
                     </ul>
 
                     </ul>
 
           </ul>
 
           </ul>
Line 1,075: Line 1,144:
 
               <li class="list">Sample</li>
 
               <li class="list">Sample</li>
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
                        <li class="list">Enterocin A + pTXB1</li>
 
 
                         <li class="list">Enterocin B + pTXB1</li>
 
                         <li class="list">Enterocin B + pTXB1</li>
 
                         <li class="list">Enterocin 96  + pTXB1</li>
 
                         <li class="list">Enterocin 96  + pTXB1</li>
−
                         <li class="list">Duracin TW49M + pTXB1</li>
+
                         <li class="list">Durancin TW-49M + pTXB1</li>
−
                        <li class="list">Subtilosin + pTXB1</li>
+
 
                 </ul>
 
                 </ul>
 
           </ul>
 
           </ul>
 
         <p class="note-title">Expression</p>
 
         <p class="note-title">Expression</p>
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
               <li class="list">Transformation (Transform correct plasmid into E. coli ER2566)to test different cultivation temperature</li>
+
               <li class="list">Transformation (Transform correct plasmid into <i>E. coli</i> ER2566)to test different cultivation temperature</li>
 
         </ul>
 
         </ul>
 
     </article>
 
     </article>
Line 1,092: Line 1,159:
 
       <p class="note-title">Cloning</p>
 
       <p class="note-title">Cloning</p>
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
               <li class="list">Purepose: Sequencing plasmid</li>
+
               <li class="list">Sequencing plasmid</li>
 
               <li class="list">Sample</li>
 
               <li class="list">Sample</li>
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
                        <li class="list">Enterocin A + pTXB1</li>
 
 
                         <li class="list">Enterocin B + pTXB1</li>
 
                         <li class="list">Enterocin B + pTXB1</li>
 
                         <li class="list">Enterocin 96  + pTXB1</li>
 
                         <li class="list">Enterocin 96  + pTXB1</li>
−
                         <li class="list">Duracin TW49M + pTXB1</li>
+
                         <li class="list">Durancin TW-49M + pTXB1</li>
−
                        <li class="list">Subtilosin + pTXB1</li>
+
 
                 </ul>
 
                 </ul>
 
         </ul>
 
         </ul>
Line 1,105: Line 1,170:
 
       <p class="note-title">Expression</p>
 
       <p class="note-title">Expression</p>
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
               <li class="list">Purepose: Cultivation (Cultivation of E. coli ER2566 colonies for IPTG induction)</li>
+
               <li class="list">Cultivation (Cultivation of <i>E. coli</i> ER2566 colonies for IPTG induction)</li>
−
               <li class="list">Purepose: IPTG Induction (To test the temperature of cultivation after induction)Condition: temp = 37, 30, 13.5°C</li>
+
               <li class="list">IPTG Induction (To test the temperature of cultivation after induction)Condition: temp = 37, 30, 13.5°C</li>
 
         </ul>
 
         </ul>
 
     </article>
 
     </article>
Line 1,114: Line 1,179:
 
       <p class="note-title">Expression</p>
 
       <p class="note-title">Expression</p>
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
               <li class="list">Purepose: SDS PAGE (To check the protein production after induction)Check different temperature</li>
+
               <li class="list">SDS-PAGE (To check the protein production after induction)Check different temperature</li>
−
               <li class="list">Purepose: IPTG Induction (To test the concentration of IPTG)Condition: concentration = 200, 400, 600, 800, 1000μM</li>
+
               <li class="list">IPTG Induction (To test the concentration of IPTG)Condition: concentration = 200, 400, 600, 800, 1000μM</li>
 
         </ul>
 
         </ul>
 
     </article>
 
     </article>
Line 1,123: Line 1,188:
 
           <p class="note-title">Expression</p>
 
           <p class="note-title">Expression</p>
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
               <li class="list">Purepose: SDS PAGE (To check the protein production after induction)Check different IPTG concentration</li>
+
               <li class="list">SDS-PAGE (To check the protein production after induction) -> Check different IPTG concentration</li>
−
              <li class="list">Sample</li>
+
 
           </ul>
 
           </ul>
 
     </article>
 
     </article>
Line 1,130: Line 1,194:
 
     <article id="August-18" class="note-item">
 
     <article id="August-18" class="note-item">
 
         <h2>August 18</h2><hr>
 
         <h2>August 18</h2><hr>
−
       <p class="note-title">SDS-PAGE</p>
+
       <p class="note-title">Transformation</p>
 +
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
              <li class="list">Transforming backbone pTXB1 into <i>E. coli</i> ER2566 to produce protein as our negative control in verifying the function of our target peptide.</li>
 +
              <li class="list">Transforming backbone pTXB1 containing bacteriocin gene into <i>E. coli</i> ER2566 to produce our target protein as a bio-stimulator.</li>
 +
              <li class="list">Sample</li>
 +
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
                      <li class="list">backbone pTXB1 mini</li>
 +
                      <li class="list">backbone pTXB1 containing Enterocin B gene mini</li>
 +
                      <li class="list">backbone pTXB1 containing Enterocin 96 gene mini</li>
 +
                      <li class="list">backbone pTXB1 containing Leucocyclicin Q gene mini</li>
 +
                </ul>
 +
        <p class="note-title">Cultivation</p>
 +
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
              <li class="list">Cultivate the <i>E. coli</i> ER2566 at 37°C cultivating <i>Bacillus subtilis</i> ER2566 at 37°C carrying the backbone pTXB1 to produce protein as our negative control in verifying the function of our target peptide.</li>
 +
              <li class="list">Cultivate the <i>E. coli</i> ER2566 at 37°C cultivating <i>E. coli</i> ER2566 at 37°C carrying the backbone pTXB1 containing bacteriocin gene to produce our target protein as a bio-stimulator.</li>
 +
              <li class="list">Sample</li>
 +
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
                      <li class="list">Fresh colony of <i>E. coli</i> ER2566 carrying the backbone pTXB1 from an overnight plate</li>
 +
                      <li class="list">Fresh colony of <i>E. coli</i> ER2566 carrying the backbone pTXB1 containing Enterocin B gene from an overnight plate</li>
 +
                      <li class="list">Fresh colony of <i>E. coli</i> ER2566 carrying the backbone pTXB1 containing Enterocin 96 gene from an overnight plate</li>
 +
                      <li class="list">Fresh colony of <i>E. coli</i> ER2566 carrying the backbone pTXB1 containing Leucocyclicin Q gene from an overnight plate</li>
 +
                </ul>       
 +
        <p class="note-title">IPTG Induction</p>
 +
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
              <li class="list">Inducting <i>E. coli</i> ER2566 carrying the backbone pTXB1 after cultivating at 37°C to produce protein as our negative control in verifying the function of our target peptide</li>
 +
              <li class="list">Inducting <i>E. coli</i> ER2566 carrying the backbone pTXB1 containing bacteriocin gene after cultivating at 37°C to produce our target protein as a bio-stimulator.</li>
 +
              <li class="list">Sample</li>
 +
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
                      <li class="list">Culture of <i>E. coli</i> ER2566 carrying the backbone pTXB1</li>
 +
                      <li class="list">Culture of <i>E. coli</i> ER2566 carrying the backbone pTXB1 containing Enterocin B gene</li>
 +
                      <li class="list">Culture of <i>E. coli</i> ER2566 carrying the backbone pTXB1 containing Enterocin 96 gene</li>
 +
                      <li class="list">Culture of <i>E. coli</i> ER2566 carrying the backbone pTXB1 containing Leucocyclicin Q gene</li>
 +
                </ul>      
 
     </article>
 
     </article>
  
Line 1,137: Line 1,233:
 
         <p class="note-title">Cloning</p>
 
         <p class="note-title">Cloning</p>
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
               <li class="list">Purepose: Digestion of PCR products (Including insert and backbone pET30a)</li>
+
               <li class="list">Digestion of PCR products (Including insert and backbone pET30a)</li>
−
               <li class="list">Purepose: Ligation of digestion products (Ligase the DNA fragment into backbone pET30a)</li>
+
               <li class="list">Ligation of digestion products (Ligase the DNA fragment into backbone pET30a)</li>
 
               <li class="list">Sample(8/17)</li>
 
               <li class="list">Sample(8/17)</li>
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
                      <li class="list">Enterocin A + pET30a</li>
 
 
                       <li class="list">Enterocin B + pET30a</li>
 
                       <li class="list">Enterocin B + pET30a</li>
 
                       <li class="list">Enterocin 96 + pET30a</li>
 
                       <li class="list">Enterocin 96 + pET30a</li>
 
                       <li class="list">Bovicin HJ50 + pET30a</li>
 
                       <li class="list">Bovicin HJ50 + pET30a</li>
−
                       <li class="list">Duracin TW49M + pET30a</li>
+
                       <li class="list">Durancin TW-49M + pET30a</li>
 
                       <li class="list">Lacticin Z + pET30a</li>
 
                       <li class="list">Lacticin Z + pET30a</li>
 
                       <li class="list">Leucocyclicin Q + pET30a</li>
 
                       <li class="list">Leucocyclicin Q + pET30a</li>
−
                       <li class="list">Subtilosin + pET30a</li>
+
                </ul>
 +
        </ul>
 +
        <p class="note-title">Sonication</p>
 +
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
              <li class="list">Breaking <i>E. coli</i> ER2566 carrying the backbone pTXB1 and pTXB1 containing bacteriocin gene after cultivating to harvest the protein by sonication.</li>
 +
              <li class="list">Sample</li>
 +
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
                      <li class="list">Culture of <i>E. coli</i> ER2566 carrying the backbone pTXB1 induced by IPTG</li>
 +
                      <li class="list">Culture of <i>E. coli</i> ER2566 carrying the backbone pTXB1 containing Enterocin B gene induced by IPTG </li>
 +
                      <li class="list">Culture of <i>E. coli</i> ER2566 carrying the backbone pTXB1 containing Enterocin 96 gene induced by IPTG </li>
 +
                      <li class="list">Culture of <i>E. coli</i> ER2566 carrying the backbone pTXB1 containing Leucocyclicin Q gene induced by IPTG </li>
 +
                </ul>
 +
        </ul>
 +
        <p class="note-title">Protein quantification & SDS-PAGE</p>
 +
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
              <li class="list">Quantificating the protein expressing the backbone pTXB1 and pTXB1 containing bacteriocin gene by Bradford method and running SDS-PAGE to check the protein expression.</li>
 +
              <li class="list">Sample</li>
 +
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
                      <li class="list">Protein expressing the backbone pTXB1 induced by IPTG</li>
 +
                      <li class="list">Protein expressing the backbone pTXB1 containing Enterocin B gene induced by IPTG </li>
 +
                      <li class="list">Protein expressing the backbone pTXB1 containing Enterocin 96 gene induced by IPTG </li>
 +
                       <li class="list">Protein expressing the backbone pTXB1 containing Leucocyclicin Q gene induced by IPTG </li>
 
                 </ul>
 
                 </ul>
 
         </ul>
 
         </ul>
Line 1,157: Line 1,273:
 
       <p class="note-title">Cloning</p>
 
       <p class="note-title">Cloning</p>
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
               <li class="list">Purepose: Transformation of ligation products (Transform into E. coli DH5α)</li>
+
               <li class="list">Transformation of ligation products (Transform into <i>E. coli</i> DH5α)</li>
−
               <li class="list">Purepose: Taq PCR (PCR of ligation products to amplify insert gene)</li>
+
               <li class="list">Taq PCR (PCR of ligation products to amplify insert gene)</li>
−
               <li class="list">Purepose: Electrophoresis (To check PCR products)</li>
+
               <li class="list">Electrophoresis (To check PCR products)</li>
 
               <li class="list">Sample</li>
 
               <li class="list">Sample</li>
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
                      <li class="list">Enterocin A + pET30a</li>
 
 
                       <li class="list">Enterocin B + pET30a</li>
 
                       <li class="list">Enterocin B + pET30a</li>
 
                       <li class="list">Enterocin 96 + pET30a</li>
 
                       <li class="list">Enterocin 96 + pET30a</li>
 
                       <li class="list">Bovicin HJ50 + pET30a</li>
 
                       <li class="list">Bovicin HJ50 + pET30a</li>
−
                       <li class="list">Duracin TW49M + pET30a</li>
+
                       <li class="list">Durancin TW-49M + pET30a</li>
 
                       <li class="list">Lacticin Z + pET30a</li>
 
                       <li class="list">Lacticin Z + pET30a</li>
 
                       <li class="list">Leucocyclicin Q + pET30a</li>
 
                       <li class="list">Leucocyclicin Q + pET30a</li>
−
                      <li class="list">Subtilosin + pET30a</li>
 
 
                 </ul>
 
                 </ul>
 
         </ul>
 
         </ul>
Line 1,178: Line 1,292:
 
       <p class="note-title">Cloning</p>
 
       <p class="note-title">Cloning</p>
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
               <li class="list">Purepose: Cultivation</li>
+
               <li class="list">Cultivation</li>
−
               <li class="list">Purepose: Miniprep (Purify Plasmid)</li>
+
               <li class="list">Miniprep (Purify Plasmid)</li>
 
               <li class="list">Sample</li>
 
               <li class="list">Sample</li>
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
                      <li class="list">Enterocin A + pET30a</li>
 
 
                       <li class="list">Enterocin B + pET30a</li>
 
                       <li class="list">Enterocin B + pET30a</li>
 
                       <li class="list">Enterocin 96 + pET30a</li>
 
                       <li class="list">Enterocin 96 + pET30a</li>
 
                       <li class="list">Bovicin HJ50 + pET30a</li>
 
                       <li class="list">Bovicin HJ50 + pET30a</li>
−
                       <li class="list">Duracin TW49M + pET30a</li>
+
                       <li class="list">Durancin TW-49M + pET30a</li>
 
                       <li class="list">Lacticin Z + pET30a</li>
 
                       <li class="list">Lacticin Z + pET30a</li>
 
                       <li class="list">Leucocyclicin Q + pET30a</li>
 
                       <li class="list">Leucocyclicin Q + pET30a</li>
−
                      <li class="list">Subtilosin + pET30a</li>
 
 
                 </ul>
 
                 </ul>
 
     </article>
 
     </article>
Line 1,200: Line 1,312:
 
               <li class="list">Sample</li>
 
               <li class="list">Sample</li>
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
                      <li class="list">Enterocin A + pET30a</li>
 
 
                       <li class="list">Enterocin B + pET30a</li>
 
                       <li class="list">Enterocin B + pET30a</li>
 
                       <li class="list">Enterocin 96 + pET30a</li>
 
                       <li class="list">Enterocin 96 + pET30a</li>
 
                       <li class="list">Bovicin HJ50 + pET30a</li>
 
                       <li class="list">Bovicin HJ50 + pET30a</li>
−
                       <li class="list">Duracin TW49M + pET30a</li>
+
                       <li class="list">Durancin TW-49M + pET30a</li>
 
                       <li class="list">Lacticin Z + pET30a</li>
 
                       <li class="list">Lacticin Z + pET30a</li>
 
                       <li class="list">Leucocyclicin Q + pET30a</li>
 
                       <li class="list">Leucocyclicin Q + pET30a</li>
−
                      <li class="list">Subtilosin + pET30a</li>
 
 
                 </ul>
 
                 </ul>
 
         </ul>
 
         </ul>
Line 1,214: Line 1,324:
 
     <article id="August-23" class="note-item">
 
     <article id="August-23" class="note-item">
 
         <h2>August 23</h2><hr>
 
         <h2>August 23</h2><hr>
−
       <p class="note-title">Protein purification(8/22-8/23)</p>
+
       <p class="note-title">None</p>
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-lectin-his</li>
+
−
                </ul>
+
−
              <li class="list">Collect：<br>pass through solution, wash through solution(W1~3), elution solution(E1~10), filtered NaCl solution, and filtered ddH<sub>2</sub>O solution.</li>
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">Cultivation and IPTG induction</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Cultivation of sample <i>BL21-Rosetta-gami</i> colonies for protein purification.</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his A<sup>r</sup> 8/20</li>
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup> 8/20</li>
+
−
                </ul>
+
−
              <li class="list">Add 1000μM IPTG and test OD<sub>600</sub> </li>
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">Sonication</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
 
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his A<sup>r</sup> 8/23</li>
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup> 8/23</li>
+
−
                </ul>
+
−
 
+
−
        </ul>
+
 
     </article>
 
     </article>
  
 
     <article id="August-24" class="note-item">
 
     <article id="August-24" class="note-item">
 
         <h2>August 24</h2><hr>
 
         <h2>August 24</h2><hr>
−
      <p class="note-title">Protein purification(8/23-8/24)</p>
+
        <p class="note-title">Transformation</p>
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
              <li class="list">Transforming backbone pTXB1 containing bacteriocin gene into <i>E. coli</i> ER2566 to produce our target protein as a bio-stimulator.</li>
 
               <li class="list">Sample</li>
 
               <li class="list">Sample</li>
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
                       <li class="list">Hv1a-lectin-his</li>
+
                       <li class="list">backbone pTXB1 containing Bovicin HJ50 gene mini</li>
 +
                      <li class="list">backbone pTXB1 containing Durancin TW-49M gene mini</li>
 
                 </ul>
 
                 </ul>
−
              <li class="list">Collect：<br>pass through solution, wash through solution(W1~3), elution solution(E1~10), filtered NaCl solution, and filtered ddH<sub>2</sub>O solution.</li>
+
          </ul>
−
         </ul>
+
         <p class="note-title">Cultivation</p>
−
 
+
−
      <p class="note-title">Cultivation and IPTG induction</p>
+
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
               <li class="list">Cultivation of sample <i>BL21-Rosetta-gami</i> colonies for protein purification.</li>
+
               <li class="list">Cultivate the <i>E. coli</i> ER2566 at 37°C cultivating <i>E. coli</i> ER2566 at 37°C carrying the backbone pTXB1 containing bacteriocin gene to produce our target protein as a bio-stimulator.</li>
 
               <li class="list">Sample</li>
 
               <li class="list">Sample</li>
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
                       <li class="list">Sf1a-his A<sup>r</sup> 8/20</li>
+
                       <li class="list">Fresh colony of <i>E. coli</i> ER2566 carrying the backbone pTXB1 containing Bovicin HJ50 gene from an overnight plate</li>
−
                       <li class="list">Sf1a-lectin-his A<sup>r</sup> 8/20</li>
+
                       <li class="list">Fresh colony of <i>E. coli</i> ER2566 carrying the backbone pTXB1 containing Durancin TW-49M gene from an overnight plate</li>
−
                </ul>
+
                 </ul>
−
              <li class="list">Refresh to approximately OD<sub>600</sub> 0.7</li>
+
          </ul>                
−
              <li class="list">Add 1000μM IPTG and test OD<sub>600</sub></li>
+
         <p class="note-title">IPTG Induction</p>
−
              <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Sf1a-his: 0.966</li>
+
−
                      <li class="list">Sf1a-lectin-his: 1.363</li>
+
−
                 </ul>
+
−
              <li class="list">Certification, and add 2mL binding buffer and 200μM PMSF for sonication. Repeat three times.</li>
+
−
         </ul>
+
−
 
+
−
      <p class="note-title">Sonication</p>
+
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
 
+
              <li class="list">Inducting <i>E. coli</i> ER2566 carrying the backbone pTXB1 containing bacteriocin gene after cultivating at 37°C to produce our target protein as a bio-stimulator.</li>
 
               <li class="list">Sample</li>
 
               <li class="list">Sample</li>
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
                       <li class="list">Sf1a-his A<sup>r</sup> 8/24</li>
+
                       <li class="list">Culture of <i>E. coli</i> ER2566 carrying the backbone pTXB1 containing Bovicin HJ50 gene</li>
−
                       <li class="list">Sf1a-lectin-his A<sup>r</sup> 8/24</li>
+
                       <li class="list">Culture of <i>E. coli</i> ER2566 carrying the backbone pTXB1 containing Durancin TW-49M gene</li>
 
                 </ul>
 
                 </ul>
−
 
+
           </ul>
−
        </ul>
+
−
      <p class="note-title">SDS-PAGE</p>
+
−
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Check the purification protein.</li>
+
−
              <li class="list">Sample</li>
+
−
              <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-lectin-his(8/22-8/23)</li>
+
−
              </ul>
+
−
        </ul>
+
 
     </article>
 
     </article>
  
 
     <article id="August-25" class="note-item">
 
     <article id="August-25" class="note-item">
 
         <h2>August 25</h2><hr>
 
         <h2>August 25</h2><hr>
−
      <p class="note-title">Protein purification(8/24-8/25)</p>
+
              <p class="note-title">Sonication</p>
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
              <li class="list">Breaking <i>E. coli</i> ER2566 carrying the backbone pTXB1 containing bacteriocin gene after cultivating to harvest the protein by sonication.</li>
 
               <li class="list">Sample</li>
 
               <li class="list">Sample</li>
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
                       <li class="list">Hv1a-lectin-his</li>
+
                       <li class="list">Culture of <i>E. coli</i> ER2566 carrying the backbone pTXB1 containing Bovicin HJ50 gene induced by IPTG </li>
 +
                      <li class="list">Culture of <i>E. coli</i> ER2566 carrying the backbone pTXB1 containing Durancin TW-49M gene induced by IPTG </li>
 
                 </ul>
 
                 </ul>
−
              <li class="list">Collect：<br>pass through solution, wash through solution(W1~3), elution solution(E1~10), filtered NaCl solution, and filtered ddH<sub>2</sub>O solution.</li>
 
 
         </ul>
 
         </ul>
−
      <p class="note-title">SDS-PAGE</p>
+
        <p class="note-title">Protein quantification & SDS-PAGE</p>
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
               <li class="list">Check the purification protein.</li>
+
               <li class="list">Quantificating the protein expressing the backbone pTXB1 containing bacteriocin gene by Bradford method and running SDS-PAGE to check the protein expression.</li>
 
               <li class="list">Sample</li>
 
               <li class="list">Sample</li>
−
              <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
                       <li class="list">Hv1a-lectin-his(8/23-8/24)</li>
+
                       <li class="list">Protein expressing the backbone pTXB1 containing Bovicin HJ50 gene induced by IPTG </li>
−
              </ul>
+
                      <li class="list">Protein expressing the backbone pTXB1 containing Durancin TW-49M gene induced by IPTG </li>
 +
                </ul>
 
         </ul>
 
         </ul>
 
     </article>
 
     </article>
Line 1,316: Line 1,382:
 
     <article id="August-26" class="note-item">
 
     <article id="August-26" class="note-item">
 
         <h2>August 26</h2><hr>
 
         <h2>August 26</h2><hr>
−
       <p class="note-title">Cultivation</p>
+
       <p class="note-title">None</p>
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Cultivation of sample <i>BL21-Rosetta-gami</i> colonies for protein purification.</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his A<sup>r</sup> 8/15</li>
+
−
                      <li class="list">Hv1a-lectin-his A<sup>r</sup> 8/15</li>
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup> 8/15</li>
+
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup> 8/15</li>
+
−
                </ul>
+
−
 
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">Sonication</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
 
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Sf1a-his A<sup>r</sup> 8/24</li>
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup> 8/24</li>
+
−
                </ul>
+
−
 
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">Protein purification</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-lectin-his</li>
+
−
                </ul>
+
−
              <li class="list">Collect：<br>pass through solution, wash through solution(W1~3), elution solution(E1~10), filtered NaCl solution, and filtered ddH<sub>2</sub>O solution.</li>
+
−
        </ul>
+
−
 
+
−
 
+
−
 
+
−
      <p class="note-title">Cultivation</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Cultivation of sample <i>BL21-Rosetta-gami</i> colonies for protein purification.</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Sf1a-his A<sup>r</sup> 8/17</li>
+
−
                      <li class="list">OAIP-his A<sup>r</sup> 8/17</li>
+
−
                </ul>
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">IPTG induction</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Induce the mass protein expression for SDS-PAGE.</li>
+
−
              <li class="list">The protein would form inclusion body. Therefore, it was devided into two parts, the urea and control.</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his A<sup>r</sup> 8/26</li>
+
−
                      <li class="list">Hv1a-lectin-his A<sup>r</sup> 8/26</li>
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup> 8/26</li>
+
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup> 8/26</li>
+
−
                </ul>
+
−
              <li class="list">Add 500μM IPTG</li>
+
−
              <li class="list">Take the following samples to go on the experience first. The others storage in 4℃ refrigerator.</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his A<sup>r</sup> 8/26</li>
+
−
                      <li class="list">Hv1a-lectin-his A<sup>r</sup> 8/26</li>
+
−
                </ul>
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">SDS-PAGE</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Check the protein in pellet or in solution.</li>
+
−
              <li class="list">Sample</li>
+
−
              <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his A<sup>r</sup> 8/26(with urea)</li>
+
−
                      <li class="list">Hv1a-his A<sup>r</sup> 8/26</li>
+
−
                      <li class="list">Hv1a-lectin-his A<sup>r</sup> 8/26(with urea)</li>
+
−
                      <li class="list">Hv1a-lectin-his A<sup>r</sup> 8/26</li>
+
−
              </ul>
+
−
              <li class="list">Sonication and the supernatant is loading sample1</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">10 seconds on, 40 seconds off and repeat six times.</li>
+
−
                </ul>
+
−
              <li class="list">Add binding buffer (with/without urea) again and the solution is loading sample 2</li>
+
−
              <li class="list">Sonication again and the supernatant is loading sample 3</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">10 seconds on, 40 seconds off and repeat six times.</li>
+
−
                </ul>
+
−
              <li class="list">Add binding buffer (with/without urea) again and the solution is loading sample4</li>
+
−
              <li class="list">Loading sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his (with urea) 1~4</li>
+
−
                      <li class="list">Hv1a-his 1~4</li>
+
−
                      <li class="list">Hv1a-lectin-his (with urea) 1~4</li>
+
−
                      <li class="list">Hv1a-lectin-his 1~4</li>
+
−
                </ul>
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">IPTG induction</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Induce the mass protein expression for SDS-PAGE.</li>
+
−
              <li class="list">The protein would form inclusion body. Therefore, it was devided into two parts, the urea and control.</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his A<sup>r</sup> 8/26</li>
+
−
                      <li class="list">Hv1a-lectin-his A<sup>r</sup> 8/26</li>
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup> 8/26</li>
+
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup> 8/26</li>
+
−
                </ul>
+
−
              <li class="list">Add 500μM IPTG and test OD<sub>600</sub> to approximately 1.050</li>
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">SDS-PAGE</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Check the protein in pellet or in solution.</li>
+
−
              <li class="list">Sample</li>
+
−
              <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his A<sup>r</sup> 8/26(with urea)</li>
+
−
                      <li class="list">Hv1a-his A<sup>r</sup> 8/26</li>
+
−
                      <li class="list">Hv1a-lectin-his A<sup>r</sup> 8/26(with urea)</li>
+
−
                      <li class="list">Hv1a-lectin-his A<sup>r</sup> 8/26</li>
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup> 8/26(with urea)</li>
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup> 8/26</li>
+
−
                      <li class="list">OAIPlectin-his A<sup>r</sup> 8/26(with urea)</li>
+
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup> 8/26</li>
+
−
              </ul>
+
−
              <li class="list">Certificate the sample, add binding buffer (with/without urea), PMSF</li>
+
−
              <li class="list">Sonication and the supernatant is loading sample1</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">10 seconds on, 40 seconds off and repeat six times.</li>
+
−
                </ul>
+
−
              <li class="list">Add binding buffer (with/without urea) again and the solution is loading sample 2</li>
+
−
              <li class="list">Sonication again and the supernatant is loading sample 3</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">10 seconds on, 40 seconds off and repeat six times.</li>
+
−
                </ul>
+
−
              <li class="list">Add binding buffer (with/without urea) again and the solution is loading sample4</li>
+
−
              <li class="list">Loading sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his (with urea) 1~4</li>
+
−
                      <li class="list">Hv1a-his 1~4</li>
+
−
                      <li class="list">Hv1a-lectin-his (with urea) 1~4</li>
+
−
                      <li class="list">Hv1a-lectin-his 1~4</li>
+
−
                      <li class="list">Sf1a-lectin-his (with urea) 1~4</li>
+
−
                      <li class="list">Sf1a-lectin-his 1~4</li>
+
−
                      <li class="list">OAIPlectin-his (with urea) 1~4</li>
+
−
                      <li class="list">OAIP-lectin-his 1~4</li>
+
−
                </ul>
+
−
        </ul>
+
 
     </article>
 
     </article>
  
 
     <article id="August-27" class="note-item">
 
     <article id="August-27" class="note-item">
 
         <h2>August 27</h2><hr>
 
         <h2>August 27</h2><hr>
−
       <p class="note-title">Cultivation</p>
+
       <p class="note-title">None</p>
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Cultivation of sample BL21-Rosetta-gami colonies for protein purification.</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his A<sup>r</sup> </li>
+
−
                      <li class="list">Hv1a-lectin-his  A<sup>r</sup> </li>
+
−
                </ul>
+
−
        </ul>
+
 
     </article>
 
     </article>
 +
   
 
     <article id="August-28" class="note-item">
 
     <article id="August-28" class="note-item">
 
         <h2>August 28</h2><hr>
 
         <h2>August 28</h2><hr>
−
       <p class="note-title">Protein purification</p>
+
       <p class="note-title">None</p>
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">The buffer contains the urea</li>
+
−
              <li class="list">Sample(8/27)</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his</li>
+
−
                      <li class="list">Hv1a-lectin-his</li>
+
−
                </ul>
+
−
              <li class="list">Collect：<br>pass through solution, wash through solution(W1~3), elution solution(E1~10), filtered NaCl solution, and filtered ddH<sub>2</sub>O solution.</li>
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">SDS-PAGE</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Check the purification protein.</li>
+
−
              <li class="list">Sample(8/28)</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his</li>
+
−
                      <li class="list">Hv1a-lectin-his</li>
+
−
                </ul>
+
−
 
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">Cultivation</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Cultivation of sample BL21-Rosetta-gami colonies for protein purification.</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Sf1a-his A<sup>r</sup> 8/17</li>
+
−
                </ul>
+
−
        </ul>
+
 
     </article>
 
     </article>
  
 
     <article id="August-29" class="note-item">
 
     <article id="August-29" class="note-item">
 
         <h2>August 29</h2><hr>
 
         <h2>August 29</h2><hr>
−
       <p class="note-title">Protein purification</p>
+
       <p class="note-title">None</p>
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">The buffer contains the urea</li>
+
−
              <li class="list">Sample(8/28)</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Sf1a-lectin-his</li>
+
−
                </ul>
+
−
              <li class="list">Collect：<br>pass through solution, wash through solution(W1~3), elution solution(E1~10), filtered NaCl solution, and filtered ddH<sub>2</sub>O solution.</li>
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">SDS-PAGE</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Check the purification protein.</li>
+
−
              <li class="list">Sample(8/29)</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Sf1a-lectin-his</li>
+
−
                </ul>
+
−
 
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">Cultivation</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Cultivation of sample BL21-Rosetta-gami colonies for protein purification.</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Sf1a-his A<sup>r</sup> 8/17</li>
+
−
                </ul>
+
−
        </ul>
+
−
 
+
−
 
+
−
 
+
−
      <p class="note-title">Cultivation</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Cultivation of sample <i>BL21-Rosetta-gami</i> colonies for protein purification.</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his A<sup>r</sup> 8/15</li>
+
−
                </ul>
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">Cultivation</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Cultivation of sample <i>BL21-Rosetta-gami</i> colonies for protein purification.</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-lectin-his A<sup>r</sup> 8/15</li>
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup> 8/15</li>
+
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup> 8/15</li>
+
−
                </ul>
+
−
        </ul>
+
 
     </article>
 
     </article>
  
 
     <article id="August-30" class="note-item">
 
     <article id="August-30" class="note-item">
 
         <h2>August 30</h2><hr>
 
         <h2>August 30</h2><hr>
−
       <p class="note-title">IPTG induction</p>
+
       <p class="note-title">None</p>
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Induce the mass protein expression for SDS-PAGE.</li>
+
−
              <li class="list">The protein would form inclusion body. Therefore, it was devided into two parts, the urea and control.</li>
+
−
              <li class="list">Sample</li>
+
−
              <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-lectin-his A<sup>r</sup> 8/29</li>
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup> 8/29</li>
+
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup> 8/29</li>
+
−
 
+
−
              </ul>
+
−
              <li class="list">Refresh to approximately OD<sub>600</sub> 0.6</li>
+
−
              <li class="list">Add 500μM IPTG and cultivate for 4hr</li>
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">Protein purification</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">The buffer contains the urea</li>
+
−
              <li class="list">Sample(8/30)</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Sf1a-lectin-his</li>
+
−
                      <li class="list">Hv1a-lectin-his</li>
+
−
                </ul>
+
−
              <li class="list">Collect：<br>pass through solution, wash through solution(W1~3), elution solution(E1~10), filtered NaCl solution, and filtered ddH<sub>2</sub>O solution.</li>
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">SDS-PAGE</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Check the purification protein.</li>
+
−
              <li class="list">Sample(8/29)</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Sf1a-lectin-his</li>
+
−
                      <li class="list">Hv1a-lectin-his</li>
+
−
                </ul>
+
−
 
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">PCR</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">amplify the insert gene</li>
+
−
              <li class="list">Sample(8/30)</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his</li>
+
−
                      <li class="list">Hv1a-lectin-his</li>
+
−
                      <li class="list">Sf1a-his</li>
+
−
                      <li class="list">Sf1a-lectin-his</li>
+
−
                      <li class="list">OAIP-his</li>
+
−
                      <li class="list">OAIP-lectin-his</li>
+
−
                </ul>
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">Electrophoresis</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Electrophoresis of PCR product</li>
+
−
              <li class="list">Sample(8/30 PCR product)</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his</li>
+
−
                      <li class="list">Hv1a-lectin-his</li>
+
−
                      <li class="list">Sf1a-his</li>
+
−
                      <li class="list">Sf1a-lectin-his</li>
+
−
                      <li class="list">OAIP-his</li>
+
−
                      <li class="list">OAIP-lectin-his</li>
+
−
                </ul>
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">Digestion</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Digest min for transformation</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his digestion EP</li>
+
−
                      <li class="list">Hv1a-lectin-his digestion ES</li>
+
−
                      <li class="list">Sf1a-his digestion EP</li>
+
−
                      <li class="list">Sf1a-lectin-his digestion ES</li>
+
−
                      <li class="list">OAIP-his digestion EP</li>
+
−
                      <li class="list">OAIP-lectin-his digestion ES</li>
+
−
                </ul>
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">Transformation</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Transformation PSB1C3 to DH5α</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Trans PSB1C3 8/30</li>
+
−
                      <li class="list">Trans PSB1C3 8/30</li>
+
−
                </ul>
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">Urea test</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Check whether protein in inclusion body or not.</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his</li>
+
−
                      <li class="list">Hv1a-his + Urea</li>
+
−
                      <li class="list">Sf1a-his</li>
+
−
                      <li class="list">Sf1a-his + Urea</li>
+
−
                      <li class="list">OAIP-his</li>
+
−
                      <li class="list">OAIP-his + Urea</li>
+
−
                </ul>
+
−
        </ul>
+
 
     </article>
 
     </article>
  
 
     <article id="August-31" class="note-item">
 
     <article id="August-31" class="note-item">
 
         <h2>August 31</h2><hr>
 
         <h2>August 31</h2><hr>
−
       <p class="note-title">Ligation</p>
+
       <p class="note-title">None</p>
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Ligase insert gene into the pSB1C3</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his</li>
+
−
                      <li class="list">Hv1a-lectin-his</li>
+
−
                      <li class="list">Sf1a-his</li>
+
−
                      <li class="list">Sf1a-lectin-his</li>
+
−
                      <li class="list">OAIP-his</li>
+
−
                      <li class="list">OAIP-lectin-his</li>
+
−
                </ul>
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">Transformation</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Transformation of ligated product to DH5α</li>
+
−
              <li class="list">Sample(8/31 Ligation product)</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his</li>
+
−
                      <li class="list">Hv1a-lectin-his</li>
+
−
                      <li class="list">Sf1a-his</li>
+
−
                      <li class="list">Sf1a-lectin-his</li>
+
−
                      <li class="list">OAIP-his</li>
+
−
                      <li class="list">OAIP-lectin-his</li>
+
−
                </ul>
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">Dialysis and refolding</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Dialysis and refolding for insoluble protein</li>
+
−
              <li class="list">Sample(8/8)</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-lectin-his (8/30)</li>
+
−
                      <li class="list">Sf1a-lectin-his(8/30)</li>
+
−
                      <li class="list">OAIP-lectin-his(8/30)</li>
+
−
                      <li class="list">Hv1a-his(8/28)</li>
+
−
                </ul>
+
−
 
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">SDS-PAGE</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Check the purification protein.</li>
+
−
              <li class="list">Sample(8/30)</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Sf1a-lectin-his</li>
+
−
                      <li class="list">Hv1a-lectin-his</li>
+
−
                </ul>
+
−
 
+
−
        </ul>
+
 
     </article>
 
     </article>
  
Line 1,727: Line 1,414:
 
     <article id="September-1" class="note-item">
 
     <article id="September-1" class="note-item">
 
         <h2>September 1</h2><hr>
 
         <h2>September 1</h2><hr>
−
       <p class="note-title">Protein purification</p>
+
       <p class="note-title">None</p>
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">The buffer contains the urea</li>
+
−
              <li class="list">Sample(8/30)</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">OAIP-lectin-his</li>
+
−
                      <li class="list">Hv1a-his</li>
+
−
                </ul>
+
−
              <li class="list">Collect：<br>pass through solution, wash through solution(W1~3), elution solution(E1~10), filtered NaCl solution, and filtered ddH<sub>2</sub>O solution.</li>
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">SDS-PAGE</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Check the purification protein.</li>
+
−
              <li class="list">Sample(8/30)</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">OAIP-lectin-his</li>
+
−
                      <li class="list">Hv1a-his</li>
+
−
                </ul>
+
−
 
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">Cultivation</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Cultivation of sample BL21-Rosetta-gami colonies for protein purification.</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his A<sup>r</sup> </li>
+
−
                      <li class="list">Hv1a-lectin-his  A<sup>r</sup> </li>
+
−
                      <li class="list">OAIP-his A<sup>r</sup> </li>
+
−
                      <li class="list">Sf1a-his A<sup>r</sup> </li>
+
−
                </ul>
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">IPTG Induction</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Prepare for the purify the protein from sample <i>BL21-Rosetta-gami</i> colonies.</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his A<sup>r</sup> </li>
+
−
                      <li class="list">OAIP-his A<sup>r</sup> </li>
+
−
                      <li class="list">Sf1a-his A<sup>r</sup> </li>
+
−
                </ul>
+
−
              <li class="list">Add IPTG 500μM and test OD<sub>600</sub> after 4hr.</li>
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">Sonication</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his A<sup>r</sup> </li>
+
−
                      <li class="list">OAIP-his A<sup>r</sup> </li>
+
−
                      <li class="list">Sf1a-his A<sup>r</sup> </li>
+
−
                </ul>
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">Cultivation</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Cultivation of sample <i>BL21-Rosetta-gami</i> colonies for protein purification.</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup></li>
+
−
                </ul>
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">Sonication</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup></li>
+
−
                </ul>
+
−
        </ul>
+
 
     </article>
 
     </article>
  
 
     <article id="September-2" class="note-item">
 
     <article id="September-2" class="note-item">
 
         <h2>September 2</h2><hr>
 
         <h2>September 2</h2><hr>
−
      <p class="note-title">Protein purification</p>
+
         <p class="note-title">None</p>
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">The buffer contains the urea</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup></li>
+
−
                </ul>
+
−
              <li class="list">Collect：<br>pass through solution, wash through solution(W1~3), elution solution(E1~10), filtered NaCl solution, and filtered ddH<sub>2</sub>O solution.</li>
+
−
         </ul>
+
−
 
+
−
      <p class="note-title">Protein quantification Braford method</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his</li>
+
−
                      <li class="list">Hv1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup></li>
+
−
                </ul>
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">Dialysis and refolding</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Dialysis and refolding for insoluble protein</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his</li>
+
−
                      <li class="list">Hv1a-lectin-his</li>
+
−
                      <li class="list">Sf1a-his</li>
+
−
                      <li class="list">Sf1a-lectin-his</li>
+
−
                      <li class="list">OAIP-his</li>
+
−
                      <li class="list">OAIP-lectin-his</li>
+
−
                </ul>
+
−
        </ul>
+
 
     </article>
 
     </article>
  
 
     <article id="September-3" class="note-item">
 
     <article id="September-3" class="note-item">
 
         <h2>September 3</h2><hr>
 
         <h2>September 3</h2><hr>
−
       <p class="note-title">Protein purification</p>
+
       <p class="note-title">None</p>
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup></li>
+
−
                </ul>
+
−
              <li class="list">Collect：<br>pass through solution, wash through solution(W1~3), elution solution(E1~10), filtered NaCl solution, and filtered ddH<sub>2</sub>O solution.</li>
+
−
        </ul>
+
−
      <p class="note-title">Protein quantification Braford method</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">The buffer contains the urea</li>
+
−
                <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup></li>
+
−
                </ul>
+
−
        </ul>
+
−
      <p class="note-title">Concentrate protein</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Increase the concentration of protein</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup></li>
+
−
                </ul>
+
−
        </ul>
+
 
     </article>
 
     </article>
  
 
     <article id="September-4" class="note-item">
 
     <article id="September-4" class="note-item">
 
         <h2>September 4</h2><hr>
 
         <h2>September 4</h2><hr>
−
         <p class="note-title">Protein purification</p>
+
         <p class="note-title">None</p>
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">The buffer contains the urea</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup></li>
+
−
                </ul>
+
−
              <li class="list">Collect：<br>pass through solution, wash through solution(W1~3), elution solution(E1~10), filtered NaCl solution, and filtered ddH<sub>2</sub>O solution.</li>
+
−
        </ul>
+
 
     </article>
 
     </article>
  
 
     <article id="September-5" class="note-item">
 
     <article id="September-5" class="note-item">
 
         <h2>September 5</h2><hr>
 
         <h2>September 5</h2><hr>
−
       <p class="note-title">IPTG Induction</p>
+
       <p class="note-title">None</p>
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
    </article>
−
              <li class="list">Prepare for the purify the protein from sample <i>BL21-Rosetta-gami</i> colonies.</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his</li>
+
−
                      <li class="list">Hv1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup></li>
+
−
                </ul>
+
−
              <li class="list">Add IPTG 500μM and test OD<sub>600</sub> after 4hr.</li>
+
−
        </ul>
+
  
−
      <p class="note-title">Sonication</p>
+
    <article id="September-6" class="note-item">
 +
        <h2>September 6</h2><hr>
 +
                    <p class="note-title">Transformation</p>
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
              <li class="list">Transforming backbone pTXB1 containing Lacticin Z gene into <i>E. coli</i> ER2566 to produce our target protein as a bio-stimulator.</li>
 
               <li class="list">Sample</li>
 
               <li class="list">Sample</li>
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
                       <li class="list">Hv1a-his</li>
+
                       <li class="list">backbone pTXB1 containing Lacticin Z gene mini</li>
−
                      <li class="list">Hv1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup></li>
+
 
                 </ul>
 
                 </ul>
−
        </ul>
+
          </ul>
−
 
+
        <p class="note-title">Cultivation</p>
−
      <p class="note-title">Protein purification</p>
+
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
               <li class="list">The buffer contains the urea</li>
+
               <li class="list">Cultivate the <i>E. coli</i> ER2566 at 37°C cultivating <i>Bacillus subtilis</i> ER2566 at 37°C carrying the backbone pTXB1 containing Lacticin Z gene to produce our target protein as a bio-stimulator.</li>
 
               <li class="list">Sample</li>
 
               <li class="list">Sample</li>
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
                       <li class="list">Hv1a-his</li>
+
                       <li class="list">Fresh colony of <i>E. coli</i> ER2566 carrying the backbone pTXB1 containing Lacticin Z gene from an overnight plate</li>
−
                      <li class="list">Hv1a-lectin-his</li>
+
                 </ul>  
−
                 </ul>
+
          </ul>    
−
              <li class="list">Collect：<br>pass through solution, wash through solution(W1~3), elution solution(E1~10), filtered NaCl solution, and filtered ddH<sub>2</sub>O solution.</li>
+
         <p class="note-title">IPTG Induction</p>
−
         </ul>
+
−
 
+
−
      <p class="note-title">UV test</p>
+
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
               <li class="list">Test degradation rate</li>
+
               <li class="list">Inducting <i>E. coli</i> ER2566 carrying the backbone pTXB1 containing Lacticin Z gene after cultivating at 37°C to produce our target protein as a bio-stimulator.</li>
 
               <li class="list">Sample</li>
 
               <li class="list">Sample</li>
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
                       <li class="list">Hv1a-his</li>
+
                       <li class="list">Culture of <i>E. coli</i> ER2566 carrying the backbone pTXB1 containing Lacticin Z gene</li>
−
                      <li class="list">Hv1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup></li>
+
 
                 </ul>
 
                 </ul>
−
        </ul>
+
           </ul>
−
 
+
−
      <p class="note-title">Concentrate protein</p>
+
−
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Increase the concentration of protein</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup></li>
+
−
                </ul>
+
−
        </ul>
+
−
      <p class="note-title">Protein quantification Braford method</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup></li>
+
−
                </ul>
+
−
        </ul>
+
−
    </article>
+
−
 
+
−
    <article id="September-6" class="note-item">
+
−
        <h2>September 6</h2><hr>
+
−
      <p class="note-title">Protein purification</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">The buffer contains the urea</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his A<sup>r</sup></li>
+
−
                      <li class="list">Hv1a-lectin-his A<sup>r</sup></li>
+
−
                </ul>
+
−
              <li class="list">Collect：<br>pass through solution, wash through solution(W1~3), elution solution(E1~10), filtered NaCl solution, and filtered ddH<sub>2</sub>O solution.</li>
+
−
        </ul>
+
−
      <p class="note-title">Protein quantification Braford method</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his A<sup>r</sup></li>
+
−
                      <li class="list">Hv1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup></li>
+
−
                </ul>
+
−
        </ul>
+
 
     </article>
 
     </article>
  
 
     <article id="September-7" class="note-item">
 
     <article id="September-7" class="note-item">
 
         <h2>September 7</h2><hr>
 
         <h2>September 7</h2><hr>
−
      <p class="note-title">Protein purification</p>
+
        <p class="note-title">Sonication</p>
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
               <li class="list">The buffer contains the urea</li>
+
               <li class="list">Breaking <i>E. coli</i> ER2566 carrying the backbone pTXB1 containing Lacticin Z gene after cultivating to harvest the protein by sonication.</li>
 
               <li class="list">Sample</li>
 
               <li class="list">Sample</li>
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup></li>
+
                    <li class="list">Culture of <i>E. coli</i> ER2566 carrying the backbone pTXB1 containing Lacticin Z gene induced by IPTG </li>
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup></li>
+
 
                 </ul>
 
                 </ul>
−
              <li class="list">Collect：<br>pass through solution, wash through solution(W1~3), elution solution(E1~10), filtered NaCl solution, and filtered ddH<sub>2</sub>O solution.</li>
 
 
         </ul>
 
         </ul>
−
 
+
        <p class="note-title">Protein quantification & SDS-PAGE</p>
−
      <p class="note-title">SDS-PAGE</p>
+
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
               <li class="list">Check the purification protein.</li>
+
               <li class="list">Quantificating the protein expressing the backbone pTXB1 containing Lacticin Z gene by Bradford method and running SDS-PAGE to check the protein expression.</li>
 
               <li class="list">Sample</li>
 
               <li class="list">Sample</li>
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup></li>
+
                    <li class="list">Protein expressing the backbone pTXB1 containing Lacticin Z gene induced by IPTG </li>
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup></li>
+
−
                </ul>
+
−
 
+
−
        </ul>
+
−
 
+
−
 
+
−
      <p class="note-title">UV test</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Test degradation rate</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his A<sup>r</sup></li>
+
−
                      <li class="list">Hv1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup></li>
+
−
                </ul>
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">Cultivation</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Cultivation of sample BL21-Rosetta-gami colonies for protein purification.</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his A<sup>r</sup></li>
+
−
                      <li class="list">Hv1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup></li>
+
−
                </ul>
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">Cultivation</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Cultivation of sample BL21-Rosetta-gami colonies for protein purification.</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his A<sup>r</sup></li>
+
−
                      <li class="list">Hv1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup></li>
+
−
                </ul>
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">Sonication</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
 
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his A<sup>r</sup></li>
+
−
                      <li class="list">Hv1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup></li>
+
−
                </ul>
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">Protein quantification Braford method</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his A<sup>r</sup></li>
+
−
                      <li class="list">Hv1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup></li>
+
 
                 </ul>
 
                 </ul>
 
         </ul>
 
         </ul>
Line 2,082: Line 1,487:
 
     <article id="September-8" class="note-item">
 
     <article id="September-8" class="note-item">
 
         <h2>September 8</h2><hr>
 
         <h2>September 8</h2><hr>
−
       <p class="note-title">Protein purification</p>
+
       <p class="note-title">None</p>
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">The buffer contains the urea</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his A<sup>r</sup></li>
+
−
                      <li class="list">Hv1a-lectin-his A<sup>r</sup></li>
+
−
                </ul>
+
−
              <li class="list">Collect：<br>pass through solution, wash through solution(W1~3), elution solution(E1~10), filtered NaCl solution, and filtered ddH<sub>2</sub>O solution.</li>
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">SDS-PAGE</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Check the purification protein.</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his A<sup>r</sup></li>
+
−
                      <li class="list">Hv1a-lectin-his A<sup>r</sup></li>
+
−
                </ul>
+
−
 
+
−
        </ul>
+
−
 
+
−
 
+
−
 
+
−
      <p class="note-title">Cultivation and IPTG induction</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Cultivation of sample BL21-Rosetta-gami colonies for protein purification.</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his A<sup>r</sup></li>
+
−
                      <li class="list">Hv1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup></li>
+
−
                </ul>
+
−
              <li class="list">Refresh to approximately OD<sub>600</sub> 0.7</li>
+
−
              <li class="list">Add 1000μM IPTG and test OD<sub>600</sub> </li>
+
−
                  <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his:0.772</li>
+
−
                      <li class="list">Hv1a-lectin-his:0.631</li>
+
−
                      <li class="list">Sf1a-his:0.567</li>
+
−
                      <li class="list">Sf1a-lectin-his:0.78</li>
+
−
                      <li class="list">OAIP-his:0.851</li>
+
−
                      <li class="list">OAIP-lectin-his:0.819</li>
+
−
                </ul>
+
−
              <li class="list">Certification, and add 2mL binding buffer and 200μM PMSF for sonication. Repeat three times.</li>
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">Sonication</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his A<sup>r</sup></li>
+
−
                      <li class="list">Hv1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup></li>
+
−
                </ul>
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">Sonication</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
 
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his A<sup>r</sup></li>
+
−
                      <li class="list">Hv1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup></li>
+
−
                </ul>
+
−
        </ul>
+
−
 
+
−
      <p class="note-title">Protein purification</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">The buffer contains the urea</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Sf1a-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup></li>
+
−
                </ul>
+
−
              <li class="list">Collect：<br>pass through solution, wash through solution(W1~3), elution solution(E1~10), filtered NaCl solution, and filtered ddH<sub>2</sub>O solution.</li>
+
−
        </ul>
+
−
      <p class="note-title">SDS-PAGE</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Check the purification protein.</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Sf1a-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup></li>
+
−
                </ul>
+
−
 
+
−
        </ul>
+
 
     </article>
 
     </article>
  
 
     <article id="September-9" class="note-item">
 
     <article id="September-9" class="note-item">
 
         <h2>September 9</h2><hr>
 
         <h2>September 9</h2><hr>
−
       <p class="note-title">Protein purification</p>
+
       <p class="note-title">None</p>
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">The buffer contains the urea</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Sf1a-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup></li>
+
−
                </ul>
+
−
              <li class="list">Collect：<br>pass through solution, wash through solution(W1~3), elution solution(E1~10), filtered NaCl solution, and filtered ddH<sub>2</sub>O solution.</li>
+
−
        </ul>
+
−
      <p class="note-title">SDS-PAGE</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Check the purification protein.</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Sf1a-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup></li>
+
−
                </ul>
+
−
 
+
−
        </ul>
+
 
     </article>
 
     </article>
  
Line 2,219: Line 1,502:
 
         <p class="note-title">None</p>
 
         <p class="note-title">None</p>
 
     </article>
 
     </article>
 +
   
 
     <article id="September-11" class="note-item">
 
     <article id="September-11" class="note-item">
 
         <h2>September 11</h2><hr>
 
         <h2>September 11</h2><hr>
−
       <p class="note-title">Dialysis protein</p>
+
       <p class="note-title">None</p>
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Dialysis and refolding for insoluble protein</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his  E1-E3</li>
+
−
                      <li class="list">Hv1a-lectin-his  E1-E5</li>
+
−
                      <li class="list">Sf1a-his  E1-E5</li>
+
−
                      <li class="list">Sf1a-lectin-his E1-E4</li>
+
−
                      <li class="list">OAIP-his  E1-E3</li>
+
−
                      <li class="list">OAIP-lectin-his  E1-E2</li>
+
−
                </ul>
+
−
        </ul>
+
 
     </article>
 
     </article>
  
 
     <article id="September-12" class="note-item">
 
     <article id="September-12" class="note-item">
 
         <h2>September 12</h2><hr>
 
         <h2>September 12</h2><hr>
−
       <p class="note-title">Protein quantification Braford method</p>
+
       <p class="note-title">None</p>
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his A<sup>r</sup></li>
+
−
                      <li class="list">Hv1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup></li>
+
−
                </ul>
+
−
        </ul>
+
 
     </article>
 
     </article>
  
Line 2,256: Line 1,517:
 
         <p class="note-title">None</p>
 
         <p class="note-title">None</p>
 
     </article>
 
     </article>
 +
   
 
     <article id="September-14" class="note-item">
 
     <article id="September-14" class="note-item">
 
         <h2>September 14</h2><hr>
 
         <h2>September 14</h2><hr>
 
         <p class="note-title">None</p>
 
         <p class="note-title">None</p>
 
     </article>
 
     </article>
 +
   
 
     <article id="September-15" class="note-item">
 
     <article id="September-15" class="note-item">
 
         <h2>September 15</h2><hr>
 
         <h2>September 15</h2><hr>
 
         <p class="note-title">None</p>
 
         <p class="note-title">None</p>
 
     </article>
 
     </article>
 +
   
 
     <article id="September-16" class="note-item">
 
     <article id="September-16" class="note-item">
 
         <h2>September 16</h2><hr>
 
         <h2>September 16</h2><hr>
 
         <p class="note-title">None</p>
 
         <p class="note-title">None</p>
 
     </article>
 
     </article>
 +
   
 
     <article id="September-17" class="note-item">
 
     <article id="September-17" class="note-item">
 
         <h2>September 17</h2><hr>
 
         <h2>September 17</h2><hr>
−
       <p class="note-title">Dialysis protein</p>
+
       <p class="note-title">None</p>
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Dialysis and refolding for insoluble protein</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his  E2-E3</li>
+
−
                      <li class="list">Hv1a-lectin-his  E1-E6</li>
+
−
                      <li class="list">Sf1a-his  E1-E4</li>
+
−
                      <li class="list">Sf1a-lectin-his E2-E4</li>
+
−
                      <li class="list">OAIP-his  E2-E4</li>
+
−
                      <li class="list">OAIP-lectin-his  E2-E3</li>
+
−
                </ul>
+
−
        </ul>
+
 
     </article>
 
     </article>
  
Line 2,289: Line 1,542:
 
         <p class="note-title">None</p>
 
         <p class="note-title">None</p>
 
     </article>
 
     </article>
 +
   
 
     <article id="September-19" class="note-item">
 
     <article id="September-19" class="note-item">
 
         <h2>September 19</h2><hr>
 
         <h2>September 19</h2><hr>
 
         <p class="note-title">None</p>
 
         <p class="note-title">None</p>
 
     </article>
 
     </article>
 +
   
 
     <article id="September-20" class="note-item">
 
     <article id="September-20" class="note-item">
 
         <h2>September 20</h2><hr>
 
         <h2>September 20</h2><hr>
 
         <p class="note-title">None</p>
 
         <p class="note-title">None</p>
 
     </article>
 
     </article>
 +
   
 
     <article id="September-21" class="note-item">
 
     <article id="September-21" class="note-item">
 
         <h2>September 21</h2><hr>
 
         <h2>September 21</h2><hr>
−
         <p class="note-title">None</p>
+
         <p class="note-title">Functional analysis test</p>
−
    </article>
+
         <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
    <article id="September-22" class="note-item">
+
              <li class="list">Test the function of Lacticin Z (produced by <i>E. coli</i> ER2566) by elisa reader(triplicate)</li>
−
         <h2>September 22</h2><hr>
+
−
      <p class="note-title">Protein quantification Braford method</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
 
               <li class="list">Sample</li>
 
               <li class="list">Sample</li>
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
                      <li class="list">Hv1a-his A<sup>r</sup></li>
+
                    <li class="list">Control:<br>
−
                      <li class="list">Hv1a-lectin-his A<sup>r</sup></li>
+
                                      1. <i>Bacillus subtilis</i> + Ampicillin<br>
−
                      <li class="list">Sf1a-his A<sup>r</sup></li>
+
                                      2. <i>Bacillus subtilis</i> + Production of the pTXB1 backbone induced by IPTG<br>
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup></li>
+
                                      3. <i>Bacillus subtilis</i> + LB broth<br>
−
                      <li class="list">OAIP-his A<sup>r</sup></li>
+
                                      4. LB broth for background</li>
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup></li>
+
                    <li class="list">Test:<br>
 +
                                      1. <i>Bacillus subtilis</i> + Production of the pTXB1 backbone containing Lacticin Z gene induced by IPTG</li><br>
 
                 </ul>
 
                 </ul>
 
         </ul>
 
         </ul>
 +
    </article>
 +
   
 +
    <article id="September-22" class="note-item">
 +
        <h2>September 22</h2><hr>
 +
          <p class="note-title">None</p>
 
     </article>
 
     </article>
  
 
     <article id="September-23" class="note-item">
 
     <article id="September-23" class="note-item">
 
         <h2>September 23</h2><hr>
 
         <h2>September 23</h2><hr>
−
      <p class="note-title">Dialysis protein</p>
+
          <p class="note-title">None</p>
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Remove urea</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his E1-E3</li>
+
−
                      <li class="list">Hv1a-lectin-his E1-E6</li>
+
−
                      <li class="list">Sf1a-his E1-E4</li>
+
−
                      <li class="list">Sf1a-lectin-his E1-E6</li>
+
−
                      <li class="list">OAIP-his E1-E3</li>
+
−
                      <li class="list">OAIP-lectin-his E1-E6</li>
+
−
                </ul>
+
−
        </ul>
+
−
 
+
−
              <p class="note-title">SDS-PAGE</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Check the purification protein again</li>
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his </li>
+
−
                      <li class="list">Hv1a-lectin-his (no β-me)</li>
+
−
                      <li class="list">Sf1a-his </li>
+
−
                      <li class="list">Sf1a-lectin-his (no β-me)</li>
+
−
                      <li class="list">OAIP-his </li>
+
−
                      <li class="list">OAIP-lectin-his (no β-me)</li>
+
−
                </ul>
+
−
 
+
−
        </ul>
+
−
 
+
−
 
+
−
              <p class="note-title">Electrophoresis</p>
+
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Electrophoresis of composite parts again</li>
+
−
              <li class="list">Sample(8/30 PCR product)</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his</li>
+
−
                      <li class="list">Hv1a-lectin-his</li>
+
−
                      <li class="list">Sf1a-his</li>
+
−
                      <li class="list">Sf1a-lectin-his</li>
+
−
                      <li class="list">OAIP-his</li>
+
−
                      <li class="list">OAIP-lectin-his</li>
+
−
                </ul>
+
−
        </ul>
+
 
     </article>
 
     </article>
  
 
     <article id="September-24" class="note-item">
 
     <article id="September-24" class="note-item">
 
         <h2>September 24</h2><hr>
 
         <h2>September 24</h2><hr>
−
              <p class="note-title">Electrophoresis</p>
+
          <p class="note-title">None</p>
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Electrophoresis of composite parts again</li>
+
−
              <li class="list">Sample(8/30 PCR product)</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his</li>
+
−
                      <li class="list">Hv1a-lectin-his</li>
+
−
                      <li class="list">Sf1a-his</li>
+
−
                      <li class="list">Sf1a-lectin-his</li>
+
−
                      <li class="list">OAIP-his</li>
+
−
                      <li class="list">OAIP-lectin-his</li>
+
−
                </ul>
+
−
        </ul>
+
 
     </article>
 
     </article>
  
 
     <article id="September-25" class="note-item">
 
     <article id="September-25" class="note-item">
 
         <h2>September 25</h2><hr>
 
         <h2>September 25</h2><hr>
−
      <p class="note-title">Protein quantification Braford method</p>
+
          <p class="note-title">None</p>
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his A<sup>r</sup></li>
+
−
                      <li class="list">Hv1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-lectin-his A<sup>r</sup></li>
+
−
                </ul>
+
−
        </ul>
+
 
     </article>
 
     </article>
  
Line 2,401: Line 1,595:
 
         <p class="note-title">None</p>
 
         <p class="note-title">None</p>
 
     </article>
 
     </article>
 +
   
 
     <article id="September-27" class="note-item">
 
     <article id="September-27" class="note-item">
 
         <h2>September 27</h2><hr>
 
         <h2>September 27</h2><hr>
 
         <p class="note-title">None</p>
 
         <p class="note-title">None</p>
 
     </article>
 
     </article>
 +
   
 
     <article id="September-28" class="note-item">
 
     <article id="September-28" class="note-item">
 
         <h2>September 28</h2><hr>
 
         <h2>September 28</h2><hr>
−
       <p class="note-title">Protein quantification Braford method</p>
+
       <p class="note-title">None</p>
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
              <li class="list">Sample</li>
+
−
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
−
                      <li class="list">Hv1a-his A<sup>r</sup></li>
+
−
                      <li class="list">Hv1a-lectin-his A<sup>r</sup></li>
+
−
                      <li class="list">Sf1a-his A<sup>r</sup></li>
+
−
                      <li class="list">OAIP-his A<sup>r</sup></li>
+
−
                </ul>
+
−
        </ul>
+
 
     </article>
 
     </article>
 +
   
 
     <article id="September-29" class="note-item">
 
     <article id="September-29" class="note-item">
 
         <h2>September 29</h2><hr>
 
         <h2>September 29</h2><hr>
 
         <p class="note-title">None</p>
 
         <p class="note-title">None</p>
 
     </article>
 
     </article>
 +
   
 
     <article id="September-30" class="note-item">
 
     <article id="September-30" class="note-item">
 
         <h2>September 30</h2><hr>
 
         <h2>September 30</h2><hr>
Line 2,433: Line 1,622:
 
         <p class="note-title">None</p>
 
         <p class="note-title">None</p>
 
     </article>
 
     </article>
 +
   
 
     <article id="October-2" class="note-item">
 
     <article id="October-2" class="note-item">
 
         <h2>October 2</h2><hr>
 
         <h2>October 2</h2><hr>
 
         <p class="note-title">None</p>
 
         <p class="note-title">None</p>
 
     </article>
 
     </article>
 +
   
 
     <article id="October-3" class="note-item">
 
     <article id="October-3" class="note-item">
 
         <h2>October 3</h2><hr>
 
         <h2>October 3</h2><hr>
 
         <p class="note-title">None</p>
 
         <p class="note-title">None</p>
 
     </article>
 
     </article>
 +
   
 
     <article id="October-4" class="note-item">
 
     <article id="October-4" class="note-item">
 
         <h2>October 4</h2><hr>
 
         <h2>October 4</h2><hr>
 
         <p class="note-title">None</p>
 
         <p class="note-title">None</p>
 
     </article>
 
     </article>
 +
   
 
     <article id="October-5" class="note-item">
 
     <article id="October-5" class="note-item">
 
         <h2>October 5</h2><hr>
 
         <h2>October 5</h2><hr>
−
       <p class="note-title">Cultivation</p>
+
       <p class="note-title">Transformation</p>
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
               <li class="list">For larva test</li>
+
               <li class="list">Transforming backbone pTXB1 into <i>E. coli</i> Rosetta-Gami to produce protein as our negative control in verifying the function of our target peptide.</li>
 +
              <li class="list">Transforming backbone pTXB1 containing bacteriocin gene into <i>E. coli</i> Rosetta-Gami to produce our target protein as a bio-stimulator.</li>
 
               <li class="list">Sample</li>
 
               <li class="list">Sample</li>
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
                       <li class="list">Hv1a-GS linker-lectin  A<sup>r</sup> </li>
+
                       <li class="list">backbone pTXB1 mini</li>
 +
                      <li class="list">backbone pTXB1 containing Enterocin B gene mini</li>
 +
                      <li class="list">backbone pTXB1 containing Enterocin 96 gene mini</li>
 +
                      <li class="list">backbone pTXB1 containing Bovicin HJ50 gene mini</li>
 +
                      <li class="list">backbone pTXB1 containing Durancin TW-49M gene mini</li>
 +
                      <li class="list">backbone pTXB1 containing Lacticin Z gene mini</li>
 +
                      <li class="list">backbone pTXB1 containing Leucocyclicin Q gene mini</li>
 
                 </ul>
 
                 </ul>
 
         </ul>
 
         </ul>
Line 2,459: Line 1,659:
 
     <article id="October-6" class="note-item">
 
     <article id="October-6" class="note-item">
 
         <h2>October 6</h2><hr>
 
         <h2>October 6</h2><hr>
−
         <p class="note-title">None</p>
+
         <p class="note-title">Cultivation</p>
 +
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
              <li class="list">Cultivate the <i>E. coli</i> ER2566 at 37°C cultivating <i>E. coli</i> Rosetta-Gami at 37°C carrying the backbone pTXB1 to produce protein as our negative control in verifying the function of our target peptide.</li>
 +
              <li class="list">Cultivate the <i>E. coli</i> ER2566 at 37°C cultivating <i>E. coli</i> Rosetta-Gami at 37°C carrying the backbone pTXB1 containing bacteriocin gene produce our target protein as a bio-stimulator.</li>
 +
              <li class="list">Sample</li>
 +
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
                      <li class="list">Fresh colony of <i>E. coli</i> Rosetta-Gami carrying the backbone pTXB1 from an overnight plate</li>
 +
                      <li class="list">Fresh colony of <i>E. coli</i> Rosetta-Gami carrying the backbone pTXB1 containing Enterocin B gene from an overnight plate</li>
 +
                      <li class="list">Fresh colony of <i>E. coli</i> Rosetta-Gami carrying the backbone pTXB1 containing Enterocin 96 gene from an overnight plate</li>
 +
                      <li class="list">Fresh colony of <i>E. coli</i> Rosetta-Gami carrying the backbone pTXB1 containing Leucocyclicin Q gene from an overnight plate</li>
 +
                </ul>
 +
        </ul>
 +
        <p class="note-title">IPTG Induction</p>
 +
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
              <li class="list">Cultivate the <i>E. coli</i> ER2566 at 37°C cultivating <i>E. coli</i> Rosetta-Gami at 37°C carrying the backbone pTXB1 to produce protein as our negative control in verifying the function of our target peptide.</li>
 +
              <li class="list">Inducting <i>E. coli</i> Rosetta-Gami carrying the backbone pTXB1 containing bacteriocin gene after cultivating at 37°C produce our target protein as a bio-stimulator.</li>
 +
              <li class="list">Sample</li>
 +
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
                      <li class="list">Fresh colony of <i>E. coli</i> Rosetta-Gami carrying the backbone pTXB1 from an overnight plate</li>
 +
                      <li class="list">Culture of <i>E. coli</i> Rosetta-Gami carrying the backbone pTXB1 containing Enterocin B gene</li>
 +
                      <li class="list">Culture of <i>E. coli</i> Rosetta-Gami carrying the backbone pTXB1 containing Enterocin 96 gene</li>
 +
                      <li class="list">Culture of <i>E. coli</i> Rosetta-Gami carrying the backbone pTXB1 containing Leucocyclicin Q gene</li>
 +
                </ul>
 +
        </ul>
 
     </article>
 
     </article>
 
     <article id="October-7" class="note-item">
 
     <article id="October-7" class="note-item">
 
         <h2>October 7</h2><hr>
 
         <h2>October 7</h2><hr>
−
         <p class="note-title">None</p>
+
         <p class="note-title">Cultivation</p>
−
    </article>
+
−
 
+
−
    <article id="October-8" class="note-item">
+
−
        <h2>October 8</h2><hr>
+
−
      <p class="note-title">Protein quantification Braford method</p>
+
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
              <li class="list">Cultivate the <i>E. coli</i> ER2566 at 37°C cultivating <i>E. coli</i> Rosetta-Gami at 37°C carrying the backbone pTXB1 containing bacteriocin gene produce our target protein as a bio-stimulator.</li>
 
               <li class="list">Sample</li>
 
               <li class="list">Sample</li>
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
                       <li class="list">HLG-1</li>
+
                       <li class="list">Fresh colony of <i>E. coli</i> Rosetta-Gami carrying the backbone pTXB1 containing Bovicin HJ50 gene from an overnight plate</li>
−
                      <li class="list">HLG-2</li>
+
                       <li class="list">Fresh colony of <i>E. coli</i> Rosetta-Gami carrying the backbone pTXB1 containing Durancin TW-49M gene from an overnight plate</li>
−
                      <li class="list">Hv1a-his </li>
+
                       <li class="list">Fresh colony of <i>E. coli</i> Rosetta-Gami carrying the backbone pTXB1 containing Lacticin Z gene from an overnight plate</li>
−
                       <li class="list">Hv1a-lectin-his</li>
+
−
                      <li class="list">Sf1a-his </li>
+
−
                      <li class="list">Sf1a-lectin-his</li>
+
−
                       <li class="list">OAIP-his </li>
+
−
                      <li class="list">OAIP-lectin-his </li>
+
−
                      <li class="list">BL</li>
+
−
                      <li class="list">RG</li>
+
 
                 </ul>
 
                 </ul>
 
         </ul>
 
         </ul>
−
 
+
        <p class="note-title">IPTG Induction</p>
−
        <p class="note-title">Protein quantification Braford method</p>
+
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
              <li class="list">Inducting <i>E. coli</i> Rosetta-Gami carrying the backbone pTXB1 containing bacteriocin gene after cultivating at 37°C produce our target protein as a bio-stimulator.</li>
 
               <li class="list">Sample</li>
 
               <li class="list">Sample</li>
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
                       <li class="list">HLG-1</li>
+
                       <li class="list">Culture of <i>E. coli</i> Rosetta-Gami carrying the backbone pTXB1 containing Bovicin HJ50 gene</li>
−
                      <li class="list">Hv1a-his </li>
+
                       <li class="list">Culture of <i>E. coli</i> Rosetta-Gami carrying the backbone pTXB1 containing Durancin TW-49M gene</li>              
−
                       <li class="list">Hv1a-lectin-his</li>
+
                       <li class="list">Culture of <i>E. coli</i> Rosetta-Gami carrying the backbone pTXB1 containing Lacticin Z gene</li>
−
                      <li class="list">Sf1a-his </li>
+
−
                      <li class="list">Sf1a-lectin-his</li>
+
−
                       <li class="list">OAIP-his </li>
+
−
                      <li class="list">OAIP-lectin-his </li>
+
 
                 </ul>
 
                 </ul>
 
         </ul>
 
         </ul>
−
    </article>
+
         <p class="note-title">Sonication</p>
−
 
+
−
    <article id="October-9" class="note-item">
+
−
         <h2>October 9</h2><hr>
+
−
        <p class="note-title">None</p>
+
−
    </article>
+
−
    <article id="October-10" class="note-item">
+
−
        <h2>October 10</h2><hr>
+
−
        <p class="note-title">None</p>
+
−
    </article>
+
−
    <article id="October-11" class="note-item">
+
−
        <h2>October 11</h2><hr>
+
−
      <p class="note-title">Protein quantification Braford method</p>
+
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
              <li class="list">Breaking <i>E. coli</i> Rosetta-Gami carrying the backbone pTXB1 and pTXB1 containing bacteriocin gene after cultivating to harvest the protein by sonication.</li>
 
               <li class="list">Sample</li>
 
               <li class="list">Sample</li>
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
                       <li class="list">HLG-1</li>
+
                       <li class="list">Culture of <i>E. coli</i> Rosetta-Gami carrying the backbone pTXB1 induced by IPTG </li>
−
                      <li class="list">Hv1a-his </li>
+
                       <li class="list">Culture of <i>E. coli</i> Rosetta-Gami carrying the backbone pTXB1 containing Enterocin B gene induced by IPTG</li>
−
                       <li class="list">Hv1a-lectin-his</li>
+
                       <li class="list">Culture of <i>E. coli</i> Rosetta-Gami carrying the backbone pTXB1 containing Enterocin 96 gene induced by IPTG</li>
−
                      <li class="list">Sf1a-his </li>
+
                       <li class="list">Culture of <i>E. coli</i> Rosetta-Gami carrying the backbone pTXB1 containing Leucocyclicin Q gene induced by IPTG</li>
−
                       <li class="list">Sf1a-lectin-his</li>
+
−
                      <li class="list">OAIP-his </li>
+
−
                       <li class="list">OAIP-lectin-his </li>
+
−
                      <li class="list">RG</li>
+
 
                 </ul>
 
                 </ul>
 
         </ul>
 
         </ul>
−
 
+
        <p class="note-title">Protein quantification & SDS-PAGE</p>
−
        <p class="note-title">SDS-PAGE</p>
+
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
               <li class="list">Check the purification protein.</li>
+
               <li class="list">Quantificating the protein expressing the backbone pTXB1 and pTXB1 containing bacteriocin gene by Bradford method and running SDS-PAGE to check the protein expression.</li>
 
               <li class="list">Sample</li>
 
               <li class="list">Sample</li>
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
                       <li class="list">Hv1a(sonication)</li>
+
                       <li class="list">Protein expressing the backbone pTXB1 induced by IPTG</li>
−
                       <li class="list">Hv1a(purification)</li>
+
                       <li class="list">Protein expressing the backbone pTXB1 containing Enterocin B gene induced by IPTG </li>
−
                       <li class="list">Sf1a(sonication)</li>
+
                       <li class="list">Protein expressing the backbone pTXB1 containing Enterocin 96 gene induced by IPTG </li>
−
                       <li class="list">Sf1a(purification)</li>
+
                       <li class="list">Protein expressing the backbone pTXB1 containing Leucocyclicin Q gene induced by IPTG </li>
−
                      <li class="list">OAIP(sonication)</li>
+
−
                      <li class="list">OAIP(purification)</li>
+
 
                 </ul>
 
                 </ul>
 
         </ul>
 
         </ul>
 +
    </article>
  
−
       <p class="note-title">Protein quantification Braford method</p>
+
    <article id="October-8" class="note-item">
 +
        <h2>October 8</h2><hr>
 +
       <p class="note-title">Sonication</p>
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
              <li class="list">Breaking <i>E. coli</i> Rosetta-Gami carrying the backbone pTXB1 containing bacteriocin gene after cultivating to harvest the protein by sonication.</li>
 
               <li class="list">Sample</li>
 
               <li class="list">Sample</li>
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
                       <li class="list">HLG</li>
+
                       <li class="list">Culture of <i>E. coli</i> Rosetta-Gami carrying the backbone pTXB1 containing Bovicin HJ50 gene induced by IPTG</li>
−
                      <li class="list">Hv1a-his </li>
+
                       <li class="list">Culture of <i>E. coli</i> Rosetta-Gami carrying the backbone pTXB1 containing Durancin TW-49M gene induced by IPTG</li>
−
                       <li class="list">Hv1a-lectin-his</li>
+
                       <li class="list">Culture of <i>E. coli</i> Rosetta-Gami carrying the backbone pTXB1 containing Lacticin Z gene induced by IPTG</li>
−
                       <li class="list">Sf1a-his </li>
+
                       <li class="list">Culture of <i>E. coli</i> Rosetta-Gami carrying the backbone pTXB1 containing Leucocyclicin Q gene induced by IPTG</li>
−
                      <li class="list">Sf1a-lectin-his</li>
+
−
                       <li class="list">OAIP-his </li>
+
−
                      <li class="list">OAIP-lectin-his </li>
+
 
                 </ul>
 
                 </ul>
 
         </ul>
 
         </ul>
−
 
+
        <p class="note-title">Protein quantification & SDS-PAGE</p>
−
          <p class="note-title">Protein quantification Braford method</p>
+
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
           <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
              <li class="list">Quantificating the protein expressing the backbone pTXB1 containing bacteriocin gene by Bradford method and running SDS-PAGE to check the protein expression.</li>
 
               <li class="list">Sample</li>
 
               <li class="list">Sample</li>
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
                       <li class="list">HLG(purification)</li>
+
                       <li class="list">Protein expressing the backbone pTXB1 containing Bovicin HJ50 gene induced by IPTG </li>
−
                       <li class="list">Hv1a-his(purification) </li>
+
                       <li class="list">Protein expressing the backbone pTXB1 containing Durancin TW-49M gene induced by IPTG </li>
−
                       <li class="list">Hv1a-lectin-his(purification)</li>
+
                       <li class="list">Protein expressing the backbone pTXB1 containing Lacticin Z gene induced by IPTG </li>
−
                       <li class="list">Sf1a-his(purification)</li>
+
                       <li class="list">Protein expressing the backbone pTXB1 containing Leucocyclicin Q gene induced by IPTG </li>
−
                      <li class="list">Sf1a-lectin-his(purification)</li>
+
                </ul>
−
                      <li class="list">OAIP-his(purification) </li>
+
−
                      <li class="list">OAIP-lectin-his(purification) </li>
+
−
                      <li class="list">Hv1a-his(sonication)</li>
+
−
                      <li class="list">OAIP-his(sonication) </li>
+
−
                      <li class="list">OAIP-lectin-his(sonication) </li>
+
−
                      <li class="list">HGL-his(sonication) </li>
+
−
                      <li class="list">Hv1a-his</li>
+
−
                      <li class="list">OAIP-lectin-his</li>
+
−
                      </ul>
+
 
         </ul>
 
         </ul>
 +
    </article>
 +
 +
    <article id="October-9" class="note-item">
 +
        <h2>October 9</h2><hr>
 +
        <p class="note-title">Functional analysis test</p>
 +
        <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
              <li class="list">Test the function of bacteriocins (produced by <i>E. coli</i> Rosetta-gami) by elisa reader(triplicate)</li>
 +
              <li class="list">Sample</li>
 +
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
                      <li class="list">Control:<br>
 +
                                      1. <i>Bacillus subtilis</i> + Ampicillin<br>
 +
                                      2. <i>Bacillus subtilis</i> + Production of the pTXB1 backbone induced by IPTG<br>
 +
                                      3. <i>Bacillus subtilis</i> + LB broth<br>
 +
                                      4. LB broth for background</li>
 +
                      <li class="list">Test:<br>
 +
                                      1. <i>Bacillus subtilis</i> + Production of the pTXB1 backbone containing Enterocin B gene induced by IPTG<br>
 +
                                      2. <i>Bacillus subtilis</i> + Production of the pTXB1 backbone containing Enterocin 96 gene induced by IPTG<br>
 +
                                      3. <i>Bacillus subtilis</i> + Production of the pTXB1 backbone containing Lacticin Z gene induced by IPTG<br>
 +
                                      4. <i>Bacillus subtilis</i> + Production of the pTXB1 backbone containing Durancin TW-49M gene induced by IPTG</li>
 +
                </ul>
 +
        </ul>
 +
    </article>
 +
   
 +
    <article id="October-10" class="note-item">
 +
        <h2>October 10</h2><hr>
 +
        <p class="note-title">Functional analysis test</p>
 +
        <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
              <li class="list">Test the function of bacteriocins (produced by <i>E. coli</i> Rosetta-gami) by elisa reader(triplicate)</li>
 +
              <li class="list">Sample</li>
 +
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
                      <li class="list">Control:<br>
 +
                                      1. <i>Bacillus subtilis</i> + Ampicillin<br>
 +
                                      2. <i>Bacillus subtilis</i> + Production of the pTXB1 backbone induced by IPTG<br>
 +
                                      3. <i>Bacillus subtilis</i> + LB broth<br>
 +
                                      4. LB broth for background</li>
 +
                      <li class="list">Test:<br>
 +
                                      1. <i>Bacillus subtilis</i> + Production of the pTXB1 backbone containing Bovicin HJ50 gene induced by IPTG<br>
 +
                                      2. <i>Bacillus subtilis</i> + Production of the pTXB1 backbone containing Leucocyclicin Q gene induced by IPTG</li>
 +
                </ul>
 +
        </ul>
 +
    </article>
 +
   
 +
    <article id="October-11" class="note-item">
 +
        <h2>October 11</h2><hr>
 +
      <p class="note-title">None</p>
 
     </article>
 
     </article>
  
 
     <article id="October-12" class="note-item">
 
     <article id="October-12" class="note-item">
 
         <h2>October 12</h2><hr>
 
         <h2>October 12</h2><hr>
−
         <p class="note-title">None</p>
+
         <p class="note-title">Functional analysis test</p>
 +
        <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
              <li class="list">Test the function of bacteriocins (produced by <i>E. coli</i> Rosetta-gami) by elisa reader(Dose response assessment)</li>
 +
              <li class="list">Sample</li>
 +
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
                      <li class="list">Control:<br>
 +
                                      1. <i>Bacillus subtilis</i> + Ampicillin<br>
 +
                                      2. <i>Bacillus subtilis</i> + Production of the pTXB1 backbone induced by IPTG<br>
 +
                                      3. <i>Bacillus subtilis</i> + LB broth<br>
 +
                                      4. LB broth for background</li>
 +
                      <li class="list">Test:<br>
 +
                                      1. <i>Bacillus subtilis</i> + Production of the pTXB1 backbone containing Enterocin B gene induced by IPTG<br>
 +
                                      2. <i>Bacillus subtilis</i> + Production of the pTXB1 backbone containing Enterocin 96 gene induced by IPTG<br>
 +
                                      3. <i>Bacillus subtilis</i> + Production of the pTXB1 backbone containing Lacticin Z gene induced by IPTG<br>
 +
                                      4. <i>Bacillus subtilis</i> + Production of the pTXB1 backbone containing Durancin TW-49M gene induced by IPTG</li>
 +
                </ul>
 +
        </ul>
 
     </article>
 
     </article>
 +
   
 
     <article id="October-13" class="note-item">
 
     <article id="October-13" class="note-item">
 
         <h2>October 13</h2><hr>
 
         <h2>October 13</h2><hr>
 
         <p class="note-title">None</p>
 
         <p class="note-title">None</p>
 
     </article>
 
     </article>
 +
   
 
     <article id="October-14" class="note-item">
 
     <article id="October-14" class="note-item">
 
         <h2>October 14</h2><hr>
 
         <h2>October 14</h2><hr>
 
         <p class="note-title">None</p>
 
         <p class="note-title">None</p>
 
     </article>
 
     </article>
 +
   
 
     <article id="October-15" class="note-item">
 
     <article id="October-15" class="note-item">
 
         <h2>October 15</h2><hr>
 
         <h2>October 15</h2><hr>
−
         <p class="note-title">SDS-PAGE</p>
+
         <p class="note-title">Functional analysis test</p>
−
          <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
+
        <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
               <li class="list">Check the purification protein.</li>
+
               <li class="list">Test the function of bacteriocins (produced by <i>E. coli</i> Rosetta-gami) by elisa reader(Dose response assessment)</li>
 
               <li class="list">Sample</li>
 
               <li class="list">Sample</li>
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 
                 <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
−
                       <li class="list">Hv1a-his</li>
+
                       <li class="list">Control:<br>
−
                       <li class="list">Hv1a-lectin-his</li>
+
                                      1. <i>Bacillus subtilis</i> + Ampicillin<br>
−
                      <li class="list">Sf1a-his</li>
+
                                      2. <i>Bacillus subtilis</i> + Production of the pTXB1 backbone induced by IPTG<br>
−
                      <li class="list">Sf1a-lectin-his</li>
+
                                      3. <i>Bacillus subtilis</i> + LB broth<br>
−
                       <li class="list">OAIP-his</li>
+
                                      4. LB broth for background</li>
−
                       <li class="list">OAIP-lectin-his</li>
+
                       <li class="list">Test:<br>
 +
                                      1. <i>Bacillus subtilis</i> + Production of the pTXB1 backbone containing Bovicin HJ50 gene induced by IPTG<br>
 +
                                      2. <i>Bacillus subtilis</i> + Production of the pTXB1 backbone containing Leucocyclicin Q gene induced by IPTG</li>
 +
                </ul>
 +
        </ul>
 +
        <p class="note-title">Functional analysis test(inhibition zone)</p>
 +
        <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
              <li class="list">Test the function of Enterocin B (produced by <i>E. coli</i> Rosetta-gami) by LB Agar + Ampicillin plate</li>
 +
              <li class="list">Sample</li>
 +
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
                       <li class="list">The <i>Bacillus subtilis</i> on the plate</li>
 +
                       <li class="list">Control:<br>
 +
                                      1. Ampicillin<br>
 +
                                      2. Production of the pTXB1 backbone induced by IPTG<br>
 +
                      <li class="list">Test:<br>
 +
                                      1. Production of the pTXB1 backbone containing Enterocin B gene induced by IPTG<br>
 
                 </ul>
 
                 </ul>
 
         </ul>
 
         </ul>
Line 2,605: Line 1,866:
 
     <article id="October-16" class="note-item">
 
     <article id="October-16" class="note-item">
 
         <h2>October 16</h2><hr>
 
         <h2>October 16</h2><hr>
−
         <p class="note-title">None</p>
+
         <p class="note-title">Functional analysis test(inhibition zone)</p>
 +
        <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
              <li class="list">Test the function of bacteriocins (produced by <i>E. coli</i> Rosetta-gami) by LB Agar + Ampicillin plate</li>
 +
              <li class="list">Sample</li>
 +
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
                      <li class="list">The <i>Bacillus subtilis</i> on the plate</li>
 +
                      <li class="list">Control:<br>
 +
                                      1. Ampicillin<br>
 +
                                      2. Production of the pTXB1 backbone induced by IPTG<br>
 +
                      <li class="list">Test:<br>
 +
                                      1. Production of the pTXB1 backbone containing Bovicin HJ50 gene induced by IPTG<br>
 +
                                      2. Production of the pTXB1 backbone containing Lacticin Z gene induced by IPTG<br>
 +
                </ul>
 +
        </ul>
 
     </article>
 
     </article>
 +
   
 
     <article id="October-17" class="note-item">
 
     <article id="October-17" class="note-item">
 
         <h2>October 17</h2><hr>
 
         <h2>October 17</h2><hr>
−
         <p class="note-title">None</p>
+
         <p class="note-title">Functional analysis test</p>
 +
        <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
              <li class="list">Test the function of bacteriocins (produced by <i>E. coli</i> Rosetta-gami) by elisa reader(Dose response assessment)</li>
 +
              <li class="list">Sample</li>
 +
                <ul style="list-style-image:none;list-style-type: disc;padding-left:12px;">
 +
                      <li class="list">Control:<br>
 +
                                      1. <i>Bacillus subtilis</i> + Ampicillin<br>
 +
                                      2. <i>Bacillus subtilis</i> + Production of the pTXB1 backbone induced by IPTG<br>
 +
                                      3. <i>Bacillus subtilis</i> + LB broth<br>
 +
                      <li class="list">Test:<br>
 +
                                      1. <i>Bacillus subtilis</i> + Production of the pTXB1 backbone containing Durancin TW-49M gene induced by IPTG<br>
 +
                </ul>
 +
        </ul>  
 
     </article>
 
     </article>
 +
   
 
     <article id="October-18" class="note-item">
 
     <article id="October-18" class="note-item">
 
         <h2>October 18</h2><hr>
 
         <h2>October 18</h2><hr>
 
         <p class="note-title">None</p>
 
         <p class="note-title">None</p>
 
     </article>
 
     </article>
 +
   
 
     <article id="October-19" class="note-item">
 
     <article id="October-19" class="note-item">
 
         <h2>October 19</h2><hr>
 
         <h2>October 19</h2><hr>

Latest revision as of 19:43, 17 October 2018

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Wet Lab

July 1

Cloning

  • Received and resuspended of the IDT DNA fragments
  • Sample
    • GS linker+αS1-casein
    • Enterocin B
    • Enterocin 96
    • Bovicin HJ50
    • Durancin TW49M
    • Lacticin Z
    • Leucocyclicin Q

  • Received and resuspended of the IDT DNA fragments

July 2

None

July 3

Growth curve exp.

  • Observe the growth population of Bacillus subtilis in different temperature Condition: 37°C, 32°C, 27°C

July 4

Cloning gene of Curcumin bio-sensor

  • Doing the PCR and clean-up to amplify the DNA fragment. Digesting pET30a backbone and ligating it with αS1-casein+GS linker and T7 promoter.
  • Sample
    • pET30a backbone
    • DNA segment of αS1-casein+GS linker and T7 promoter.

July 5

Cloning gene of Curcumin bio-sensor Expression

  • Transforming the ligation product of the Curcumin bio-sensor into E. coli BL21 DE3 Cultivating the culture, preparing E. coli culture glycerol stocks, and doing the mini preparation.
  • Sample
    • fresh colony of E. coli BL21 DE3 carrying the backbone pET30a containing αS1-casein + GS linker and T7 promotor gene from an overnight plate

July 6

None

July 7

Expression of αS1-casein

  • Cultivating E. coli culture containing target protein αS1-casein from the E. coli glycerol stock and inducing it with IPTG to produce αS1-casein.
  • Purifying the protein by His-Tag.

July 8

Growth curve exp

  • Observe the growth population of Bacillus subtilis in different pH Condition: pH = 4, 5, 6, 7, 8

July 9

None

July 10

Chip Production

  • Preparing 18 chips for bio-sensor sensitivity pretest
    1. Dip the gold chips in 10mM Mua, RT for 4hrs.
    2. Wash the chips with 95% EtOH three times and dry.
    3. Add EDC+NHS mixture (100+100mM in DDW) on chips, RT for 1hrs.
    4. DDW rinse the chips and dry.
    5. Add αS1-casein on chips, RT for 1hrs.
    6. Wash with PBS three times and dry.
    6. Dip the chips in blocking solution, RT for 1.5hrs.
    7. Wash with PBS three times and dry.

July 11

Bio-sensor sensitivity pretest

  • Using DPV(Differential Pulse Voltammetry) to check whether our bio-sensor can detect curcumin.
    1. Add the diluted curcumin samples on our bio-sensor to react for 30min.
    2. Rinse with wash buffer and dry the chips.
    3. Wash the reference and counter electrodes with DDW, and dry them.
    4. Set up the three electrodes system within electrocheFunctional analysisal cell.
    5. Use the prototype of electrocheFunctional analysisal machine to measure the DPV method

July 12

Bio-sensor sensitivity assay –Determine Standard Curve and Create the Formula

  • Detecting the diluted standard curcumin samples by curcumin bio-sensor and made the standard curve and doing the polynomial curve fitting.

July 13

Bio-sensor sensitivity assay -Detecting the real Samples from Turmeric Root

  • Milling the turmeric root and dividing the powder into two groups. One of them was added with extraction buffer but not underwent the extraction protocol, and the other was added with extraction buffer but underwent the extraction process

July 14

None

July 15

Expression

  • Preparing competent cell E. coli ER2566

Growth curve exp

  • Observe the growth population of Bacillus subtilis in different salinity condition: 0.17M, 0.25M, 0.5M, 0.75M, 1.0M

July 16

Cloning

  • Amplify the insert gene (Pfu PCR)
  • Electrophoresis (To check PCR products)
  • Sample
    • Lacticin Z + pTXB1
    • Bovincin HJ50+ pTXB1

July 17

Cloning

  • Digestion of PCR products (Including insert and backbone pTXB1)
  • Ligation of digestion products (Ligase the DNA fragment into backbone pTXB1)
  • Sample
    • Lacticin Z + pTXB1
    • Bovincin HJ50+ pTXB1

July 18

Cloning

  • Transformation of ligation products (Transform into E. coli DH5α)
  • Taq PCR (PCR of ligation products to amplify insert gene)
  • Electrophoresis (To check PCR products)
  • Sample
    • Lacticin Z + pTXB1
    • Bovincin HJ50+ pTXB1

July 19

Cloning

  • Cultivation
  • Miniprep (Purify Plasmid)
  • Sample
    • Lacticin Z + pTXB1
    • Bovincin HJ50+ pTXB1

July 20

Cloning

  • Sequencing plasmid
  • Sample
    • Lacticin Z + pTXB1
    • Bovincin HJ50+ pTXB1

July 21

None

July 22

Cloning

  • Amplify the insert gene (Pfu PCR)
  • Electrophoresis (To check PCR products)
  • Digestion of PCR products (Including insert and backbone pTXB1)
  • Ligation of digestion products (Ligase the DNA fragment into backbone pTXB1)
  • Sample
    • Leucocyclicin Q + pTXB1

July 23

Cloning

  • Transformation of ligation products (Transform into E. coli DH5α)
  • Taq PCR (PCR of ligation products to amplify insert gene)
  • Electrophoresis (To check PCR products)
  • Sample
    • Leucocyclicin Q + pTXB1

July 24

Cloning

  • Cultivation
  • Miniprep (Purify Plasmid)
  • Sample
    • Leucocyclicin Q + pTXB1

July 25

Cloning

  • Sequencing plasmid
  • Sample
    • Leucocyclicin Q + pTXB1

July 26

None

July 27

None

July 28

None

July 29

Expression

  • Transformation (Transform correct plasmid into E. coli ER2566)
    • Leucocyclicin Q + pTXB1

July 30

None

July 31

None

August 1

None

August 2

None

August 3

None

August 4

None

August 5

Expression

  • Transformation (Transform correct plasmid into E. coli ER2566)
  • sample
    • Leucocyclicin Q + pTXB1

August 6

Expression

  • Cultivation (Cultivation of E. coli ER2566 colonies for IPTG induction)
  • IPTG Induction (To test the O.D. levels of E. coli ER2566 to induce)Condition: O.D. = 0.5, 1.3
  • sample
    • Leucocyclicin Q + pTXB1

August 7

Expression

  • SDS-PAGE (To check the protein production after induction)
  • sample
    • Leucocyclicin Q + pTXB1

August 8

None

August 9

None

August 10

None

August 11

Cloning

  • Amplify the insert gene (Pfu PCR)
  • Electrophoresis (To check PCR products)
  • sample
    • Enterocin B
    • Enterocin 96
    • Durancin TW49M

August 12

Cloning

  • Digestion of PCR products (Including insert and backbone pTXB1)
  • Ligation of digestion products (Ligase the DNA fragment into backbone pTXB1)
  • Transformation of ligation products (Transform into E. coli DH5α)
  • sample
    • Enterocin B + pTXB1
    • Enterocin 96 + pTXB1
    • Durancin TW-49M + pTXB1

Growth curve

  • Observe the growth of Bacillus subtilis in different temperature, pH, salinityCondition:
  • 1.Temp: 37°C , pH:7 , salinity: 0.17M
  • 2.Temp: 30°C , pH:9 , salinity: 0.5M
  • 3.Temp: 25°C , pH:5 , salinity: 0.25M

August 13

Cloning

  • Taq PCR (PCR of ligation products to amplify insert gene)
  • Electrophoresis (To check PCR products)
  • sample
    • Enterocin B + pTXB1
    • Enterocin 96 + pTXB1
    • Durancin TW-49M + pTXB1

August 14

Cloning

  • Cultivation
  • Miniprep (Purify Plasmid)
  • Sample
    • Enterocin B + pTXB1
    • Enterocin 96 + pTXB1
    • Durancin TW-49M + pTXB1

Expression

  • Transformation (Transform correct plasmid into E. coli ER2566)to test different cultivation temperature

August 15

Cloning

  • Sequencing plasmid
  • Sample
    • Enterocin B + pTXB1
    • Enterocin 96 + pTXB1
    • Durancin TW-49M + pTXB1

Expression

  • Cultivation (Cultivation of E. coli ER2566 colonies for IPTG induction)
  • IPTG Induction (To test the temperature of cultivation after induction)Condition: temp = 37, 30, 13.5°C

August 16

Expression

  • SDS-PAGE (To check the protein production after induction)Check different temperature
  • IPTG Induction (To test the concentration of IPTG)Condition: concentration = 200, 400, 600, 800, 1000μM

August 17

Expression

  • SDS-PAGE (To check the protein production after induction) -> Check different IPTG concentration

August 18

Transformation

  • Transforming backbone pTXB1 into E. coli ER2566 to produce protein as our negative control in verifying the function of our target peptide.
  • Transforming backbone pTXB1 containing bacteriocin gene into E. coli ER2566 to produce our target protein as a bio-stimulator.
  • Sample
    • backbone pTXB1 mini
    • backbone pTXB1 containing Enterocin B gene mini
    • backbone pTXB1 containing Enterocin 96 gene mini
    • backbone pTXB1 containing Leucocyclicin Q gene mini

    Cultivation

    • Cultivate the E. coli ER2566 at 37°C cultivating Bacillus subtilis ER2566 at 37°C carrying the backbone pTXB1 to produce protein as our negative control in verifying the function of our target peptide.
    • Cultivate the E. coli ER2566 at 37°C cultivating E. coli ER2566 at 37°C carrying the backbone pTXB1 containing bacteriocin gene to produce our target protein as a bio-stimulator.
    • Sample
      • Fresh colony of E. coli ER2566 carrying the backbone pTXB1 from an overnight plate
      • Fresh colony of E. coli ER2566 carrying the backbone pTXB1 containing Enterocin B gene from an overnight plate
      • Fresh colony of E. coli ER2566 carrying the backbone pTXB1 containing Enterocin 96 gene from an overnight plate
      • Fresh colony of E. coli ER2566 carrying the backbone pTXB1 containing Leucocyclicin Q gene from an overnight plate

      IPTG Induction

      • Inducting E. coli ER2566 carrying the backbone pTXB1 after cultivating at 37°C to produce protein as our negative control in verifying the function of our target peptide
      • Inducting E. coli ER2566 carrying the backbone pTXB1 containing bacteriocin gene after cultivating at 37°C to produce our target protein as a bio-stimulator.
      • Sample
        • Culture of E. coli ER2566 carrying the backbone pTXB1
        • Culture of E. coli ER2566 carrying the backbone pTXB1 containing Enterocin B gene
        • Culture of E. coli ER2566 carrying the backbone pTXB1 containing Enterocin 96 gene
        • Culture of E. coli ER2566 carrying the backbone pTXB1 containing Leucocyclicin Q gene

August 19

Cloning

  • Digestion of PCR products (Including insert and backbone pET30a)
  • Ligation of digestion products (Ligase the DNA fragment into backbone pET30a)
  • Sample(8/17)
    • Enterocin B + pET30a
    • Enterocin 96 + pET30a
    • Bovicin HJ50 + pET30a
    • Durancin TW-49M + pET30a
    • Lacticin Z + pET30a
    • Leucocyclicin Q + pET30a

Sonication

  • Breaking E. coli ER2566 carrying the backbone pTXB1 and pTXB1 containing bacteriocin gene after cultivating to harvest the protein by sonication.
  • Sample
    • Culture of E. coli ER2566 carrying the backbone pTXB1 induced by IPTG
    • Culture of E. coli ER2566 carrying the backbone pTXB1 containing Enterocin B gene induced by IPTG
    • Culture of E. coli ER2566 carrying the backbone pTXB1 containing Enterocin 96 gene induced by IPTG
    • Culture of E. coli ER2566 carrying the backbone pTXB1 containing Leucocyclicin Q gene induced by IPTG

Protein quantification & SDS-PAGE

  • Quantificating the protein expressing the backbone pTXB1 and pTXB1 containing bacteriocin gene by Bradford method and running SDS-PAGE to check the protein expression.
  • Sample
    • Protein expressing the backbone pTXB1 induced by IPTG
    • Protein expressing the backbone pTXB1 containing Enterocin B gene induced by IPTG
    • Protein expressing the backbone pTXB1 containing Enterocin 96 gene induced by IPTG
    • Protein expressing the backbone pTXB1 containing Leucocyclicin Q gene induced by IPTG

August 20

Cloning

  • Transformation of ligation products (Transform into E. coli DH5α)
  • Taq PCR (PCR of ligation products to amplify insert gene)
  • Electrophoresis (To check PCR products)
  • Sample
    • Enterocin B + pET30a
    • Enterocin 96 + pET30a
    • Bovicin HJ50 + pET30a
    • Durancin TW-49M + pET30a
    • Lacticin Z + pET30a
    • Leucocyclicin Q + pET30a

August 21

Cloning

  • Cultivation
  • Miniprep (Purify Plasmid)
  • Sample
    • Enterocin B + pET30a
    • Enterocin 96 + pET30a
    • Bovicin HJ50 + pET30a
    • Durancin TW-49M + pET30a
    • Lacticin Z + pET30a
    • Leucocyclicin Q + pET30a

August 22

Cloning

  • Sequencing plasmid
  • Sample
    • Enterocin B + pET30a
    • Enterocin 96 + pET30a
    • Bovicin HJ50 + pET30a
    • Durancin TW-49M + pET30a
    • Lacticin Z + pET30a
    • Leucocyclicin Q + pET30a

August 23

None

August 24

Transformation

  • Transforming backbone pTXB1 containing bacteriocin gene into E. coli ER2566 to produce our target protein as a bio-stimulator.
  • Sample
    • backbone pTXB1 containing Bovicin HJ50 gene mini
    • backbone pTXB1 containing Durancin TW-49M gene mini

Cultivation

  • Cultivate the E. coli ER2566 at 37°C cultivating E. coli ER2566 at 37°C carrying the backbone pTXB1 containing bacteriocin gene to produce our target protein as a bio-stimulator.
  • Sample
    • Fresh colony of E. coli ER2566 carrying the backbone pTXB1 containing Bovicin HJ50 gene from an overnight plate
    • Fresh colony of E. coli ER2566 carrying the backbone pTXB1 containing Durancin TW-49M gene from an overnight plate

IPTG Induction

  • Inducting E. coli ER2566 carrying the backbone pTXB1 containing bacteriocin gene after cultivating at 37°C to produce our target protein as a bio-stimulator.
  • Sample
    • Culture of E. coli ER2566 carrying the backbone pTXB1 containing Bovicin HJ50 gene
    • Culture of E. coli ER2566 carrying the backbone pTXB1 containing Durancin TW-49M gene

August 25

Sonication

  • Breaking E. coli ER2566 carrying the backbone pTXB1 containing bacteriocin gene after cultivating to harvest the protein by sonication.
  • Sample
    • Culture of E. coli ER2566 carrying the backbone pTXB1 containing Bovicin HJ50 gene induced by IPTG
    • Culture of E. coli ER2566 carrying the backbone pTXB1 containing Durancin TW-49M gene induced by IPTG

Protein quantification & SDS-PAGE

  • Quantificating the protein expressing the backbone pTXB1 containing bacteriocin gene by Bradford method and running SDS-PAGE to check the protein expression.
  • Sample
    • Protein expressing the backbone pTXB1 containing Bovicin HJ50 gene induced by IPTG
    • Protein expressing the backbone pTXB1 containing Durancin TW-49M gene induced by IPTG

August 26

None

August 27

None

August 28

None

August 29

None

August 30

None

August 31

None

September 1

None

September 2

None

September 3

None

September 4

None

September 5

None

September 6

Transformation

  • Transforming backbone pTXB1 containing Lacticin Z gene into E. coli ER2566 to produce our target protein as a bio-stimulator.
  • Sample
    • backbone pTXB1 containing Lacticin Z gene mini

Cultivation

  • Cultivate the E. coli ER2566 at 37°C cultivating Bacillus subtilis ER2566 at 37°C carrying the backbone pTXB1 containing Lacticin Z gene to produce our target protein as a bio-stimulator.
  • Sample
    • Fresh colony of E. coli ER2566 carrying the backbone pTXB1 containing Lacticin Z gene from an overnight plate

IPTG Induction

  • Inducting E. coli ER2566 carrying the backbone pTXB1 containing Lacticin Z gene after cultivating at 37°C to produce our target protein as a bio-stimulator.
  • Sample
    • Culture of E. coli ER2566 carrying the backbone pTXB1 containing Lacticin Z gene

September 7

Sonication

  • Breaking E. coli ER2566 carrying the backbone pTXB1 containing Lacticin Z gene after cultivating to harvest the protein by sonication.
  • Sample
    • Culture of E. coli ER2566 carrying the backbone pTXB1 containing Lacticin Z gene induced by IPTG

Protein quantification & SDS-PAGE

  • Quantificating the protein expressing the backbone pTXB1 containing Lacticin Z gene by Bradford method and running SDS-PAGE to check the protein expression.
  • Sample
    • Protein expressing the backbone pTXB1 containing Lacticin Z gene induced by IPTG

September 8

None

September 9

None

September 10

None

September 11

None

September 12

None

September 13

None

September 14

None

September 15

None

September 16

None

September 17

None

September 18

None

September 19

None

September 20

None

September 21

Functional analysis test

  • Test the function of Lacticin Z (produced by E. coli ER2566) by elisa reader(triplicate)
  • Sample
    • Control:
      1. Bacillus subtilis + Ampicillin
      2. Bacillus subtilis + Production of the pTXB1 backbone induced by IPTG
      3. Bacillus subtilis + LB broth
      4. LB broth for background
    • Test:
      1. Bacillus subtilis + Production of the pTXB1 backbone containing Lacticin Z gene induced by IPTG

September 22

None

September 23

None

September 24

None

September 25

None

September 26

None

September 27

None

September 28

None

September 29

None

September 30

None

October 1

None

October 2

None

October 3

None

October 4

None

October 5

Transformation

  • Transforming backbone pTXB1 into E. coli Rosetta-Gami to produce protein as our negative control in verifying the function of our target peptide.
  • Transforming backbone pTXB1 containing bacteriocin gene into E. coli Rosetta-Gami to produce our target protein as a bio-stimulator.
  • Sample
    • backbone pTXB1 mini
    • backbone pTXB1 containing Enterocin B gene mini
    • backbone pTXB1 containing Enterocin 96 gene mini
    • backbone pTXB1 containing Bovicin HJ50 gene mini
    • backbone pTXB1 containing Durancin TW-49M gene mini
    • backbone pTXB1 containing Lacticin Z gene mini
    • backbone pTXB1 containing Leucocyclicin Q gene mini

October 6

Cultivation

  • Cultivate the E. coli ER2566 at 37°C cultivating E. coli Rosetta-Gami at 37°C carrying the backbone pTXB1 to produce protein as our negative control in verifying the function of our target peptide.
  • Cultivate the E. coli ER2566 at 37°C cultivating E. coli Rosetta-Gami at 37°C carrying the backbone pTXB1 containing bacteriocin gene produce our target protein as a bio-stimulator.
  • Sample
    • Fresh colony of E. coli Rosetta-Gami carrying the backbone pTXB1 from an overnight plate
    • Fresh colony of E. coli Rosetta-Gami carrying the backbone pTXB1 containing Enterocin B gene from an overnight plate
    • Fresh colony of E. coli Rosetta-Gami carrying the backbone pTXB1 containing Enterocin 96 gene from an overnight plate
    • Fresh colony of E. coli Rosetta-Gami carrying the backbone pTXB1 containing Leucocyclicin Q gene from an overnight plate

IPTG Induction

  • Cultivate the E. coli ER2566 at 37°C cultivating E. coli Rosetta-Gami at 37°C carrying the backbone pTXB1 to produce protein as our negative control in verifying the function of our target peptide.
  • Inducting E. coli Rosetta-Gami carrying the backbone pTXB1 containing bacteriocin gene after cultivating at 37°C produce our target protein as a bio-stimulator.
  • Sample
    • Fresh colony of E. coli Rosetta-Gami carrying the backbone pTXB1 from an overnight plate
    • Culture of E. coli Rosetta-Gami carrying the backbone pTXB1 containing Enterocin B gene
    • Culture of E. coli Rosetta-Gami carrying the backbone pTXB1 containing Enterocin 96 gene
    • Culture of E. coli Rosetta-Gami carrying the backbone pTXB1 containing Leucocyclicin Q gene

October 7

Cultivation

  • Cultivate the E. coli ER2566 at 37°C cultivating E. coli Rosetta-Gami at 37°C carrying the backbone pTXB1 containing bacteriocin gene produce our target protein as a bio-stimulator.
  • Sample
    • Fresh colony of E. coli Rosetta-Gami carrying the backbone pTXB1 containing Bovicin HJ50 gene from an overnight plate
    • Fresh colony of E. coli Rosetta-Gami carrying the backbone pTXB1 containing Durancin TW-49M gene from an overnight plate
    • Fresh colony of E. coli Rosetta-Gami carrying the backbone pTXB1 containing Lacticin Z gene from an overnight plate

IPTG Induction

  • Inducting E. coli Rosetta-Gami carrying the backbone pTXB1 containing bacteriocin gene after cultivating at 37°C produce our target protein as a bio-stimulator.
  • Sample
    • Culture of E. coli Rosetta-Gami carrying the backbone pTXB1 containing Bovicin HJ50 gene
    • Culture of E. coli Rosetta-Gami carrying the backbone pTXB1 containing Durancin TW-49M gene
    • Culture of E. coli Rosetta-Gami carrying the backbone pTXB1 containing Lacticin Z gene

Sonication

  • Breaking E. coli Rosetta-Gami carrying the backbone pTXB1 and pTXB1 containing bacteriocin gene after cultivating to harvest the protein by sonication.
  • Sample
    • Culture of E. coli Rosetta-Gami carrying the backbone pTXB1 induced by IPTG
    • Culture of E. coli Rosetta-Gami carrying the backbone pTXB1 containing Enterocin B gene induced by IPTG
    • Culture of E. coli Rosetta-Gami carrying the backbone pTXB1 containing Enterocin 96 gene induced by IPTG
    • Culture of E. coli Rosetta-Gami carrying the backbone pTXB1 containing Leucocyclicin Q gene induced by IPTG

Protein quantification & SDS-PAGE

  • Quantificating the protein expressing the backbone pTXB1 and pTXB1 containing bacteriocin gene by Bradford method and running SDS-PAGE to check the protein expression.
  • Sample
    • Protein expressing the backbone pTXB1 induced by IPTG
    • Protein expressing the backbone pTXB1 containing Enterocin B gene induced by IPTG
    • Protein expressing the backbone pTXB1 containing Enterocin 96 gene induced by IPTG
    • Protein expressing the backbone pTXB1 containing Leucocyclicin Q gene induced by IPTG

October 8

Sonication

  • Breaking E. coli Rosetta-Gami carrying the backbone pTXB1 containing bacteriocin gene after cultivating to harvest the protein by sonication.
  • Sample
    • Culture of E. coli Rosetta-Gami carrying the backbone pTXB1 containing Bovicin HJ50 gene induced by IPTG
    • Culture of E. coli Rosetta-Gami carrying the backbone pTXB1 containing Durancin TW-49M gene induced by IPTG
    • Culture of E. coli Rosetta-Gami carrying the backbone pTXB1 containing Lacticin Z gene induced by IPTG
    • Culture of E. coli Rosetta-Gami carrying the backbone pTXB1 containing Leucocyclicin Q gene induced by IPTG

Protein quantification & SDS-PAGE

  • Quantificating the protein expressing the backbone pTXB1 containing bacteriocin gene by Bradford method and running SDS-PAGE to check the protein expression.
  • Sample
    • Protein expressing the backbone pTXB1 containing Bovicin HJ50 gene induced by IPTG
    • Protein expressing the backbone pTXB1 containing Durancin TW-49M gene induced by IPTG
    • Protein expressing the backbone pTXB1 containing Lacticin Z gene induced by IPTG
    • Protein expressing the backbone pTXB1 containing Leucocyclicin Q gene induced by IPTG

October 9

Functional analysis test

  • Test the function of bacteriocins (produced by E. coli Rosetta-gami) by elisa reader(triplicate)
  • Sample
    • Control:
      1. Bacillus subtilis + Ampicillin
      2. Bacillus subtilis + Production of the pTXB1 backbone induced by IPTG
      3. Bacillus subtilis + LB broth
      4. LB broth for background
    • Test:
      1. Bacillus subtilis + Production of the pTXB1 backbone containing Enterocin B gene induced by IPTG
      2. Bacillus subtilis + Production of the pTXB1 backbone containing Enterocin 96 gene induced by IPTG
      3. Bacillus subtilis + Production of the pTXB1 backbone containing Lacticin Z gene induced by IPTG
      4. Bacillus subtilis + Production of the pTXB1 backbone containing Durancin TW-49M gene induced by IPTG

October 10

Functional analysis test

  • Test the function of bacteriocins (produced by E. coli Rosetta-gami) by elisa reader(triplicate)
  • Sample
    • Control:
      1. Bacillus subtilis + Ampicillin
      2. Bacillus subtilis + Production of the pTXB1 backbone induced by IPTG
      3. Bacillus subtilis + LB broth
      4. LB broth for background
    • Test:
      1. Bacillus subtilis + Production of the pTXB1 backbone containing Bovicin HJ50 gene induced by IPTG
      2. Bacillus subtilis + Production of the pTXB1 backbone containing Leucocyclicin Q gene induced by IPTG

October 11

None

October 12

Functional analysis test

  • Test the function of bacteriocins (produced by E. coli Rosetta-gami) by elisa reader(Dose response assessment)
  • Sample
    • Control:
      1. Bacillus subtilis + Ampicillin
      2. Bacillus subtilis + Production of the pTXB1 backbone induced by IPTG
      3. Bacillus subtilis + LB broth
      4. LB broth for background
    • Test:
      1. Bacillus subtilis + Production of the pTXB1 backbone containing Enterocin B gene induced by IPTG
      2. Bacillus subtilis + Production of the pTXB1 backbone containing Enterocin 96 gene induced by IPTG
      3. Bacillus subtilis + Production of the pTXB1 backbone containing Lacticin Z gene induced by IPTG
      4. Bacillus subtilis + Production of the pTXB1 backbone containing Durancin TW-49M gene induced by IPTG

October 13

None

October 14

None

October 15

Functional analysis test

  • Test the function of bacteriocins (produced by E. coli Rosetta-gami) by elisa reader(Dose response assessment)
  • Sample
    • Control:
      1. Bacillus subtilis + Ampicillin
      2. Bacillus subtilis + Production of the pTXB1 backbone induced by IPTG
      3. Bacillus subtilis + LB broth
      4. LB broth for background
    • Test:
      1. Bacillus subtilis + Production of the pTXB1 backbone containing Bovicin HJ50 gene induced by IPTG
      2. Bacillus subtilis + Production of the pTXB1 backbone containing Leucocyclicin Q gene induced by IPTG

Functional analysis test(inhibition zone)

  • Test the function of Enterocin B (produced by E. coli Rosetta-gami) by LB Agar + Ampicillin plate
  • Sample
    • The Bacillus subtilis on the plate
    • Control:
      1. Ampicillin
      2. Production of the pTXB1 backbone induced by IPTG
    • Test:
      1. Production of the pTXB1 backbone containing Enterocin B gene induced by IPTG

October 16

Functional analysis test(inhibition zone)

  • Test the function of bacteriocins (produced by E. coli Rosetta-gami) by LB Agar + Ampicillin plate
  • Sample
    • The Bacillus subtilis on the plate
    • Control:
      1. Ampicillin
      2. Production of the pTXB1 backbone induced by IPTG
    • Test:
      1. Production of the pTXB1 backbone containing Bovicin HJ50 gene induced by IPTG
      2. Production of the pTXB1 backbone containing Lacticin Z gene induced by IPTG

October 17

Functional analysis test

  • Test the function of bacteriocins (produced by E. coli Rosetta-gami) by elisa reader(Dose response assessment)
  • Sample
    • Control:
      1. Bacillus subtilis + Ampicillin
      2. Bacillus subtilis + Production of the pTXB1 backbone induced by IPTG
      3. Bacillus subtilis + LB broth
    • Test:
      1. Bacillus subtilis + Production of the pTXB1 backbone containing Durancin TW-49M gene induced by IPTG

October 18

None

October 19

None