Difference between revisions of "Team:NCKU Tainan/Notebook"

 
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    <h1 class="head">Notebook</h1>
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            <h1 class="head">Notebook</h1>
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        </div>
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        <div class="righttitle">
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            <h6 class="subtitle">Of Blood, Sweat and Tears</h6>
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        </div>
 
         <div class="navbar-example">
 
         <div class="navbar-example">
 
             <div class="row">
 
             <div class="row">
 
                 <div class="col-2 side">
 
                 <div class="col-2 side">
 
                     <div id="sidelist" class="list-group">
 
                     <div id="sidelist" class="list-group">
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                         <a class="list-group-item list-group-item-action" href="#Pasr_and_Pgada">P<sub>asr</sub> and PgadA</a>
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                         <a class="list-group-item list-group-item-action" href="#Pasr_and_Pgada">P<sub>asr</sub> and P<sub>gadA</sub></a>
 
                         <a class="list-group-item list-group-item-action" href="#pH_sensor_test">pH Sensor Test</a>
 
                         <a class="list-group-item list-group-item-action" href="#pH_sensor_test">pH Sensor Test</a>
 
                         <a class="list-group-item list-group-item-action" href="#CA">CA</a>
 
                         <a class="list-group-item list-group-item-action" href="#CA">CA</a>
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                     <div data-spy="scroll" data-target="#sidelist" data-offset="0" class="scrollspy-example">
 
                         <div id="Pasr_and_Pgada">
 
                         <div id="Pasr_and_Pgada">
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                            </br></br></br></br>
 
 
                             <h3>Construction of P<sub>asr</sub> and P<sub>gadA</sub></h3></br>
 
                             <h3>Construction of P<sub>asr</sub> and P<sub>gadA</sub></h3></br>
  
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                             <p class="pcontent">4/28</br> </p>
 
                             <p class="pcontent">4/28</br> </p>
 
                             <ul>
 
                             <ul>
−
                                 <li>Digested the pSB1C3-sfGFP plasmid. Ligase the plasmid with P<sub>asr</sub> / P<sub>gadA</sub> and
+
                                 <li>Digested the pSB1C3-GFP plasmid. Ligase the plasmid with P<sub>asr</sub> / P<sub>gadA</sub> and
 
                                     RiboJ by PCR. Confirmed by DNA gel electrophoresis. Transformed the gene in DH5
 
                                     RiboJ by PCR. Confirmed by DNA gel electrophoresis. Transformed the gene in DH5
 
                                     alpha and spread the bacteria on LB plates.</li>
 
                                     alpha and spread the bacteria on LB plates.</li>
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                         <div id="pH_sensor_test">
 
                         <div id="pH_sensor_test">
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                            </br></br></br></br>
 
 
                             <h3>The pH sensor test</h3></br>
 
                             <h3>The pH sensor test</h3></br>
  
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                         <div id="CA">
 
                         <div id="CA">
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                            </br></br></br></br>
 
 
                             <h3>Construction of CA</h3></br>
 
                             <h3>Construction of CA</h3></br>
  
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                         <div id="RbcL">
 
                         <div id="RbcL">
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                            </br></br></br></br>
 
 
                             <h3>Construction of RbcL</h3></br>
 
                             <h3>Construction of RbcL</h3></br>
  
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                             <p class="pcontent">8/1</br> </p>
 
                             <p class="pcontent">8/1</br> </p>
 
                             <ul>
 
                             <ul>
−
                                 <li>Ligate the RbcL with PlacI.</li>
+
                                 <li>Ligate the RbcL with P<sub>LacI</sub>.</li>
−
                                 <li>Transformed the pSB1C3-P<sub>T7</sub>-RbcL and pSB1C3-PlacI-RbcL into DH5 alpha.</li>
+
                                 <li>Transformed the pSB1C3-P<sub>T7</sub>-RbcL and pSB1C3-P<sub>LacI</sub>-RbcL into DH5 alpha.</li>
 
                             </ul></br>
 
                             </ul></br>
  
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                         <div id="RbcXS">
 
                         <div id="RbcXS">
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                            </br></br></br></br>
 
 
                             <h3>Construction of RbcXS</h3></br>
 
                             <h3>Construction of RbcXS</h3></br>
  
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                         <div id="PRK">
 
                         <div id="PRK">
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                            </br></br></br></br>
 
 
                             <h3>Construction of PRK</h3></br>
 
                             <h3>Construction of PRK</h3></br>
  
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                             <p class="pcontent">8/1</br> </p>
 
                             <p class="pcontent">8/1</br> </p>
 
                             <ul>
 
                             <ul>
−
                                 <li>Ligated PRK with PlacI and PT7.</li>
+
                                 <li>Ligated PRK with P<sub>LacI</sub> and P<sub>T7</sub>.</li>
 
                                 <li>Transformed into DH5 alpha.
 
                                 <li>Transformed into DH5 alpha.
  
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                         <div id="Whole_Construction">
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                            </br></br></br></br>
 
 
                             <h3>Whole construction</h3></br>
 
                             <h3>Whole construction</h3></br>
  
 
                             <p class="pcontent">8/8</br> </p>
 
                             <p class="pcontent">8/8</br> </p>
 
                             <ul>
 
                             <ul>
−
                                 <li>Ligated PT7-CA with PLacI-PRK on pSB1C3</li>
+
                                 <li>Ligated P<sub>T7</sub>-CA with P<sub>LacI</sub>-PRK on pSB1C3</li>
 
                             </ul></br>
 
                             </ul></br>
  
 
                             <p class="pcontent">8/9</br> </p>
 
                             <p class="pcontent">8/9</br> </p>
 
                             <ul>
 
                             <ul>
−
                                 <li>Ligated PT7-RbcL with PT7-RbcXS on pSB1C3</li>
+
                                 <li>Ligated P<sub>T7</sub>-RbcL with P<sub>T7</sub>-RbcXS on pSB1C3</li>
 
                             </ul></br>
 
                             </ul></br>
  
 
                             <p class="pcontent">8/28</br> </p>
 
                             <p class="pcontent">8/28</br> </p>
 
                             <ul>
 
                             <ul>
−
                                 <li>Inserted PT7-CA with PLacI-PRK into pSB3K3</li>
+
                                 <li>Inserted P<sub>T7</sub>-CA with P<sub>LacI</sub>-PRK into pSB3K3</li>
 
                             </ul></br>
 
                             </ul></br>
 
                         </div>
 
                         </div>
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                         <div id="Total_Solution">
 
                         <div id="Total_Solution">
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                            </br></br></br></br>
 
 
                             <h3>SDS PAGE, Functional test and Total solution</h3></br>
 
                             <h3>SDS PAGE, Functional test and Total solution</h3></br>
  
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                             <p class="pcontent">9/2</br> </p>
 
                             <p class="pcontent">9/2</br> </p>
 
                             <ul>
 
                             <ul>
−
                                 <li> Ran SDS-PAGE of pSB1C3-PT7-RbcL-PT7-RbcXS and pSB3K3-Plac-PRK-PT7-CA</li>
+
                                 <li> Ran SDS-PAGE of pSB1C3-P<sub>T7</sub>-RbcL-P<sub>T7</sub>-RbcXS and pSB3K3-P<sub>LacI</sub>-PRK-P<sub>T7</sub>-CA</li>
 
                             </ul></br>
 
                             </ul></br>
  
 
                             <p class="pcontent">9/3</br> </p>
 
                             <p class="pcontent">9/3</br> </p>
 
                             <ul>
 
                             <ul>
−
                                 <li> Transformed pSB1C3-PT7-RbcL-PT7-RbcXS and pSB3K3-Plac-PRK-PT7-CA into W3110</li>
+
                                 <li> Transformed pSB1C3-P<sub>T7</sub>-RbcL-P<sub>T7</sub>-RbcXS and pSB3K3-P<sub>LacI</sub>-PRK-P<sub>T7</sub>-CA into W3110</li>
 
                             </ul></br>
 
                             </ul></br>
  
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Latest revision as of 20:13, 17 October 2018

Notebook

Of Blood, Sweat and Tears

Construction of Pasr and PgadA


4/26~4/27

  • PCR Pasr and PgadA from E. coli MG1655 chromosome. Confirmed and extracted products by DNA gel.

4/28

  • Digested the pSB1C3-GFP plasmid. Ligase the plasmid with Pasr / PgadA and RiboJ by PCR. Confirmed by DNA gel electrophoresis. Transformed the gene in DH5 alpha and spread the bacteria on LB plates.

4/30~5/1

  • Confirmed the transformation by colony PCR ,enzyme digestion and DNA gel electrophoresis. Selected the correct colonies for sequencing and cultured them on LB plates.

5/9

  • Store the correct colonies in glycerol in -80°C.

6/1

  • Transformed each plasmid into BL21(DE3)

The pH sensor test


5/9

  • Prepared the M9 medium in different pH value.

5/11

  • Pre-cultured the DH5 alpha-pSB1C3 -Pasr-sfGFP strain.

5/12

  • Cultured the DH5 alpha-pSB1C3 -Pasr-sfGFP strain in M9 medium in different pH value. Measured the O.D. 600 value and fluorescence every hour.

5/18

  • Pre-cultured DH5 alpha-pSB1C3 –PgadA-RiboJ-sfGFP strain.
  • Prepared the M9 medium in different pH value.

5/19

  • Cultured the DH5 alpha-pSB1C3 –PgadA-RiboJ-sfGFP strain in M9 medium in different pH value. Measured the O.D. 600 value and fluorescence every hour.

6/2~6/3

  • Repeated the experiment on 5/11~5/12

7/29

  • Pre-culture the BL21(DE3)-pSB1C3 –Pasr-sfGFP strain

7/30

  • Cultured the BL21(DE3)-pSB1C3 –Pasr -sfGFP strain on 96 well plate in different pH value. Measure the fluorescence every 5 minutes in 30 minutes.

9/4

  • Pre-culture the BL21(DE3)-pSB1C3 –PgadA-RiboJ-sfGFP strain

9/5

  • Cultured the BL21(DE3)-pSB1C3 –PgadA-RiboJ-sfGFP strain strain on 96 well plate in different pH value. Measure the fluorescence every 5 minutes in 30 minutes.

Construction of CA


7/2

  • PCR IDT products (RbcL, RbcXS, PRK, CA). Confirmed by DNA gel electrophoresis. Extracted the gene from DNA gel.

7/5

  • PCR the CA. Confirmed by DNA gel electrophoresis and extracted the gene from DNA gel.

7/6

  • Digested and ligase the pSB1C3 plasmid and CA gene.

7/10~7/11

  • Repeated the PCR of CA, digestion, ligation.

7/12

  • Transformed the pSB1C3-PT7-CA into DH5 alpha.

7/19

  • Send the plasmid to sequencing

Construction of RbcL


7/2

  • PCR IDT products (RbcL, RbcXS, PRK, CA). Confirmed by DNA gel electrophoresis.
  • Extracted the gene from DNA gel.

7/11

  • PCR the RbcL with new primer.

7/20

  • PCR the RbcL with old and new primer.

7/21~24

  • Repeated the PCR of RbcL

8/1

  • Ligate the RbcL with PLacI.
  • Transformed the pSB1C3-PT7-RbcL and pSB1C3-PLacI-RbcL into DH5 alpha.

8/3

  • Confirmed the pSB1C3-PT7-RbcL construct by colony PCR.
  • Sent the gene to sequencing

Construction of RbcXS


7/2

  • Prepared the M9 medium in different pH value.

7/3~7/21

  • PCR IDT products (RbcL, RbcXS, PRK, CA). Confirmed by DNA gel electrophoresis.
  • Extracted the gene from DNA gel.

7/23

  • PCR normal/mutant RbcXS with old and new primer.

7/24

  • Confirmed by DNA gel.

Construction of PRK


7/2

  • PCR IDT products (RbcL, RbcXS, PRK, CA). Confirmed by DNA gel electrophoresis.
  • Extracted the gene from DNA gel.

7/3~8/2

  • PCR PRK.

8/1

  • Ligated PRK with PLacI and PT7.
  • Transformed into DH5 alpha.

8/2

  • Confirmed by colony PCR. Selected the colony with correct length and sent to sequencing.

Whole construction


8/8

  • Ligated PT7-CA with PLacI-PRK on pSB1C3

8/9

  • Ligated PT7-RbcL with PT7-RbcXS on pSB1C3

8/28

  • Inserted PT7-CA with PLacI-PRK into pSB3K3

SDS PAGE, Functional test and Total solution


7/25~7/30, 8/4~8/5, 8/11~8/12

  • Ran SDS-PAGE of CA, normal-RbcXS

8/7, 8/9, 8/10

  • Ran SDS-PAGE of RbcL and PRK

8/16

  • Ran the SDS-PAGE of RbcL, RbcXS and PRK

8/18~8/19

  • Activity test of CA

9/2

  • Ran SDS-PAGE of pSB1C3-PT7-RbcL-PT7-RbcXS and pSB3K3-PLacI-PRK-PT7-CA

9/3

  • Transformed pSB1C3-PT7-RbcL-PT7-RbcXS and pSB3K3-PLacI-PRK-PT7-CA into W3110

9/5~9/17

  • Total solution.

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