Difference between revisions of "Team:NCKU Tainan/Hardware"

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{{NCKU_Tainan/header}} {{NCKU_Tainan/navbar}} {{NCKU_Tainan/style}}
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<html>
  
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<head>
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    <link rel="stylesheet" href="https://2018.igem.org/Template:NCKU_Tainan/css/hardware?action=raw&ctype=text/css">
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</head>
  
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<body data-spy="scroll" data-target=".navbar-example">
  
<div class="column full_size judges-will-not-evaluate">
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    <!--Page_Content-->
<h3>★  ALERT! </h3>
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    <div class="container content">
<p>This page is used by the judges to evaluate your team for the <a href="https://2018.igem.org/Judging/Medals">medal criterion</a> or <a href="https://2018.igem.org/Judging/Awards"> award listed below</a>. </p>
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        <div class="headstyle">
<p> Delete this box in order to be evaluated for this medal criterion and/or award. See more information at <a href="https://2018.igem.org/Judging/Pages_for_Awards"> Instructions for Pages for awards</a>.</p>
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            <h1 class="head">Hardware</h1>
</div>
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        </div>
 +
        <div class="righttitle">
 +
            <h6 class="subtitle"> The Mini CO<sub>2</sub> Catcher</h6>
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        </div>
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        <div class="navbar-example">
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            <div class="row">
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                <div class="col-2 side">
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                    <div id="sidelist" class="list-group">
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                        <a class="list-group-item list-group-item-action" href="#Accomplishment">Accomplishment</a>
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                        <a class="list-group-item list-group-item-action" href="#Introduction">Introduction</a>
 +
                        <a class="list-group-item list-group-item-action" href="#Device_design">Device design</a>
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                        <a class="list-group-item list-group-item-action" href="#Bioreactor">Bioreactor</a>
 +
                        <a class="list-group-item list-group-item-action" href="#Nutrient_tank">Nutrient tank</a>
 +
                        <a class="list-group-item list-group-item-action" href="#Electromagnetic valve">Electromagnetic valve</a>
 +
                        <a class="list-group-item list-group-item-action" href="#Materials_required">Materials required</a>
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                        <a class="list-group-item list-group-item-action" href="#"><i class="fa fa-arrow-up fa-1x"
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                                aria-hidden="true"></i></a>
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                    </div>
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                </div>
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                <div class="col-10">
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                    <div data-spy="scroll" data-target="#sidelist" data-offset="0" class="scrollspy-example">
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                        <div class="container">
  
  
<div class="clear"></div>
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                            <div id="Accomplishment">
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                                </br></br></br></br>
 +
                                <h3>Accomplishment</h3>
 +
                                <div class="achievementborder">
 +
                                    <ol>
 +
                                        <li class="bigli">Built and characterized a functional prototype for carbon utilization
 +
                                            system in
 +
                                            industry sector.</li>
 +
                                        <li class="bigli">Created an instructional video, a manual and lists of materials.</li>
 +
                                        <li class="bigli">Implemented Bio-safety to our device.</li>
 +
                                        <li class="bigli">Integrated with <a href="https://2018.igem.org/Team:NCKU_Tainan/Model" style="color:#006030;">modeling</a>.</li>
 +
                                        <li class="bigli">Installation of sensors: pH Meter, Thermometer, CO<sub>2</sub> Sensor
 +
                                            and Wi-Fi Sensor.</li>
 +
                                    </ol>
 +
                                </div>
 +
                            </div>
  
  
 +
                            <div id="Introduction">
 +
                                </br></br></br></br>
 +
                                <h3>Introduction</h3>
 +
                                <div id="pt">
 +
                                    <p class="hpcontent">Nearly 30% of CO<sub>2</sub> emissions are attributable to
 +
                                        industries.
 +
                                        The goal of our
 +
                                        project is to solve the CO<sub>2</sub> problem by using engineered <i>E. coli</i>
 +
                                        to fix CO<sub>2</sub> emitted from
 +
                                        industries and convert it into bio-product, pyruvate. To accomplish our goal,
 +
                                        we designed a device
 +
                                        that will upscale our project to be used on field and we aim to integrate the
 +
                                        device into
 +
                                        industrial IGCC system. And we used the Arduino to sense the <a href="https://2018.igem.org/Team:NCKU_Tainan/pH_meter"
 +
                                            style="color:#28ff28;">pH</a>,
 +
                                        <a href="https://2018.igem.org/Team:NCKU_Tainan/CO2" style="color:#28ff28;">CO<sub>2</sub>
 +
                                            concentration</a>
 +
                                        and <a href="https://2018.igem.org/Team:NCKU_Tainan/Temperature" style="color:#28ff28;">temperature</a>
 +
                                        then use the
 +
                                        <a href="https://2018.igem.org/Team:NCKU_Tainan/wi_fi" style="color:#28ff28;">Wi-Fi
 +
                                            sensor</a> to upload to the <a href="https://2018.igem.org/Team:NCKU_Tainan/Software#Database"
 +
                                            style="color:#28ff28;">database</a>. Last but not least, we can monitor the
 +
                                        condition of our device by showing data in our <a href="https://2018.igem.org/Team:NCKU_Tainan/Software#App" style="color:#28ff28;">App</a>.</p>
 +
                                </div>
 +
                                <img class="contentimg" src="https://static.igem.org/mediawiki/2018/e/ec/T--NCKU_Tainan--enterprise_hardware1.jpg">
 +
<p class="pcenter">Fig 1.Design of our device </p>
 +
                            </div>
  
<div class="column full_size">
 
  
<h1>Hardware</h1>
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                            <div id="Device_design">
 +
                                </br></br></br></br>
 +
                                <h3>Device design</h3>
  
</div>
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                                <img class="contentimg" src="https://static.igem.org/mediawiki/2018/f/fa/T--NCKU_Tainan--Deviceintro.png">
 +
<p class="pcenter">Fig 2.Perspective schematic view of our device </p>
  
<div class="column two_thirds_size">
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                                <div id="pt">
<h3>Best Hardware Special Prize</h3>
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                                    <p class="pcontent">Our device consists of 4 main parts : a bioreactor, a nutrient
<p>iGEM is about making teams of students making synthetic biology projects. We encourage teams to work with parts and build biological devices in the lab. But we are inclusive and want all teams to work on many other types of problems in synbio. Robotic assembly, microfluidics, low cost equipment and measurement hardware are all areas ripe for innovation in synbio. </p>
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                                        tank, a collection
 +
                                        tank and Arduino sensors. The flue gas from industrial contains high concentration of CO<sub>2</sub>  
 +
                                        which will
 +
                                        inhibit the growth
 +
                                        of <i>E.coli</i>. Thus, we will decrease CO<sub>2</sub> concentration level to less
 +
                                        than 5% at the inlet of bioreactor. With a flowmeter, we can measure the flow of gases
 +
                                        in
 +
                                        pipelines.</p>
 +
                                </div>
  
<p>
+
                                <img class="contentimg" src="https://static.igem.org/mediawiki/2018/f/f0/T--NCKU_Tainan--device.jpg">
Teams who are interested in working with hardware as a side project are encouraged to apply for the hardware award.  
+
<p class="pcenter">Fig 3.Circuit diagram</p>
 +
                                <div id="pt">
 +
                                    <p class="pcontent">For Arduino, we use thermometer (DS18B20)、pH meter and
 +
                                        CO<sub>2</sub> sensor (MG811) to
 +
                                        monitor our device. Besides, the LCD will print datum while the Wi-Fi
 +
                                        sensor (ESP8266 Nodemcu) will
 +
                                        upload our records to database. You can see more information about
 +
                                        arduino code in <a href="https://2018.igem.org/Team:NCKU_Tainan/Software" style="color:#28ff28;">software</a>.</p>
 +
                                </div>
 +
                            </div>
  
<br><br>
 
To compete for the <a href="https://2018.igem.org/Judging/Awards">Best Hardware prize</a>, please describe your work on this page and also fill out the description on the <a href="https://2018.igem.org/Judging/Judging_Form">judging form</a>.
 
<br><br>
 
You must also delete the message box on the top of this page to be eligible for this prize.
 
</p>
 
</p>
 
</div>
 
  
<div class="column third_size">
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                            <div id="Bioreactor">
<div class="highlight decoration_A_full">
+
                                </br></br></br></br>
<h3>Inspiration</h3>
+
                                <h3>Bioreactor</h3>
<p>You can look at what other teams did to get some inspiration! <br />
+
                                <div id="pt">
Here are a few examples:</p>
+
                                    <p class="pcontent">We developed a closed system on in our bioreactor design and implemented online
<ul>
+
                                      real time monitoring system
<li><a href="https://2016.igem.org/Team:Valencia_UPV">2016 Valencia UPV</a></li>
+
                                        which can determine the progress condition of bioreactor.</p>
<li><a href="https://2016.igem.org/Team:Aachen">2016 Aachen </a></li>
+
                                </div>
<li><a href="https://2015.igem.org/Team:TU_Delft">2015 TU Delft  </a></li>
+
<li><a href="https://2015.igem.org/Team:TU_Darmstadt">2015 TU Darmstadt</a></li>
+
</ul>
+
</div>
+
  
</div>
+
                                <div id="pt">
 +
                                    <p class="pcontent">The gas inlet port is located on the bioreactor’s lower part while
 +
                                        outlet port is
 +
                                        located on the bioreactor’s upper lid. As low concentration CO<sub>2</sub>
 +
                                        enters the
 +
                                        bioreactor, it flows
 +
                                        through the diffuser refiner and dissolves in the buffered medium to form acid.
 +
                                        A pH sensor and
 +
                                        a thermometer is installed to monitor the bioreactor tank for further
 +
                                        control implementation.
 +
                                        Besides, the CO<sub>2</sub> concentration level of exhaust gas is monitored by
 +
                                        a CO<sub>2</sub> 
 +
                                        sensor, which is
 +
                                        mounted on the upper lid. These sensor’s output is connected to an Arduino
 +
                                        analog input and sensor
 +
                                        readings are displayed on a serial LCD which is attached on the lid of
 +
                                        bioreactor. The data is then
 +
                                        uploaded in real time to a web server via WiFi by using Arduino WiFi Shield.</br></p>
 +
                                </div>
 +
                                </br>
 +
                                <h8>Stirrer</h8></br>
  
 +
                                <img class="contentimg" src="https://static.igem.org/mediawiki/2018/6/69/T--NCKU_Tainan--Capture.PNG">
 +
<p class="pcenter">Fig 4.Perspective schematic view of magnetic stir</p>
 +
                                <div id="pt">
 +
                                    <p class="pcontent">To prevent sedimentation of cells at the bottom of bioreactor,
 +
                                        we build our own
 +
                                        slow speed magnetic stirrer of 3D printed materials which permits gentle mixing of
 +
                                        microcarrier cell cultures.
 +
                                        The 3D printed magnet bed is designed specifically for two magnets and can be
 +
                                        fitted on the DC
 +
                                        motor. The stirrer works by using a DC motor to spin two magnets with opposite
 +
                                        polarity, which
 +
                                        could create a magnetic field in the bioreactor and cause the stir bar to spin
 +
                                        and mix the
 +
                                        contents. For controlling the speed of the DC motor, we use Arduino and L298N
 +
                                        to control the input
 +
                                        voltage to the motor by using PWM signal.</p>
 +
                                <img class="contentimg" src="https://static.igem.org/mediawiki/2018/8/8b/T--NCKU_Tainan--magntic_stir_real.PNG">
 +
<p class="pcenter">Fig 5.Design of our magnetic stir</p>
 +
                                </div>
 +
                            </div>
  
 +
   
 +
 +
</br></br>
 +
                            <div id="Nutrient_tank">
 +
                                </br></br></br></br>
 +
                                <h3>Nutrient tank</h3>
 +
                                <div id="pt">
 +
                                    <p class="pcontent">Besides, we also implemented fed-batch culture system in our
 +
                                        design. Nutrients are fed to the bioreactor during cultivation to prevent
 +
                                        nutrient depletion. The nutrients are pumped into the growth chamber at a rate
 +
                                        proportional to the growth factor of the culture, which is determined
 +
                                        experimentally through the doubling time of the particular bacterial strain.</p>
 +
                                </div>
 +
                            </div>
 +
          </br></br>
 +
<div id="Electromagnetic valve">
 +
                                </br></br></br></br>                   
 +
                                <h3>Electromagnetic valve</h3>
 +
                                <div id="pt">
 +
                                    <p class="pcontent">In order to simulate the situation of the industry, two electromagnetic valves are installed on the input and output of the collection tank and the medium tank, they can be controlled by the App.</p>
 +
                                </div>
 +
                            </div>
 +
 +
                            <div id="Materials_required">
 +
                                </br></br></br></br>
 +
                                <h3>Materials required</h3>
 +
                                <div id="pt">
 +
                                    <ul>
 +
                                        <li>Acrylic Sheet</li>
 +
                                        <li>Arduino UNO</li>
 +
                                        <li>Power Supply</li>
 +
                                        <li>Batteries</li>
 +
                                        <li>Rotameter</li>
 +
                                        <li>pH meter</li>
 +
                                        <li>Thermometer (DS18B20)</li>
 +
                                        <li>CO<sub>2</sub> sensor (MG811)</li>
 +
                                        <li>Wi-Fi sensor (ESP8266 NodeMcu)</li>
 +
                                        <li>Geared DC Motor</li>
 +
                                        <li>Tubes</li>
 +
                                        <li>Magnets</li>
 +
                                        <li>3D Printed Structure</li>
 +
                                        <li>Nuts and Screws</li>
 +
                                        <li>Wires</li>
 +
                                        <li>Pumps</li>
 +
                                    </ul>
 +
                                    </br></br></br></br>
 +
                                </div>
 +
                            </div>
 +
 +
                        </div>
 +
                    </div>
 +
                </div>
 +
            </div>
 +
        </div>
 +
    </div>
 +
 +
    <script>
 +
        $(document).ready(function () {
 +
            $(window).scroll(function () {
 +
                if ($(this).scrollTop() >= 500) {
 +
                    var position = $("#sidelist").position();
 +
                    if (position == undefined) {} else {
 +
                        $('#sidelist').css({
 +
                            "position": "fixed",
 +
                            "top": "145px",
 +
                            "margin-top": "0px"
 +
                        });
 +
                    }
 +
                } else {
 +
                    $('#sidelist').removeAttr('style');
 +
                }
 +
            });
 +
            $(function () {
 +
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Latest revision as of 21:42, 17 October 2018

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