Difference between revisions of "Team:Newcastle/Collaborations"

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    <!-- home
<h3>★  ALERT! </h3>
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<p>This page is used by the judges to evaluate your team for the <a href="https://2018.igem.org/Judging/Medals">medal criterion</a> or <a href="https://2018.igem.org/Judging/Awards"> award listed below</a>. </p>
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<p> Delete this box in order to be evaluated for this medal criterion and/or award. See more information at <a href="https://2018.igem.org/Judging/Pages_for_Awards"> Instructions for Pages for awards</a>.</p>
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                <h3></h3>
<h1>Collaborations</h1>
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                <h1>
Sharing and collaboration are core values of iGEM. We encourage you to reach out and work with other teams on difficult problems that you can more easily solve together.
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                    Collaborations <br>
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                    <br>
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<h3>Silver Medal Criterion #2</h3>
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                    <a href="#collaborations1" class="smoothscroll btn btn--stroke">
Complete this page if you intend to compete for the silver medal criterion #2 on collaboration. Please see the <a href="https://2018.igem.org/Judging/Medals">2018 Medals Page</a> for more information.
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                        Exeter
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                        Sorbonne
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                        Warwick
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                <h1 class="display-2" style="margin-bottom:0px" >University of Exeter</h1>
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                    <p><font size="3"><br><br>Perchlorate salts are found in the Martian regolith covering the surface of Mars at a concentration of up to 1 %. Perchlorate is a highly oxidising compound used in rocket fuels and munitions. It is dangerous and toxic to humans. Current disposal methods are via expensive bioreactors, or contained explosions. So, if humans are to colonise Mars, we will have to remove the perchlorates from the soil in order to have a chance of developing agriculture for our survival. The University of <a href="https://2018.igem.org/Team:Exeter/Collaborations" class="black">Exeter</a> 2018 iGEM Team are developing a bioreactor that will remove perchlorate salts from soil, and dispose of waste perchlorate in a cheap, safe manner, by using genetically engineered bacteria with (per)chlorate and chlorite reducing enzymes.</font></p>
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<p><font size="3">To assist their project, we have recorded the affects of perchlorate on the growth of our free-living nitrogen fixing, soil bacteria. This has helped show the importance of their project in aiding the development of agricultural methods on Mars, as well as disposing of perchlorate in a safe, contained way so as not to harm the environment and affect soil ecosystems. The results of our experiments are displayed in Figures 1 to 3.</font></a><br><br>
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<p><font size="2"><center>Figure 1. <i>Azorhizobium caulidolens</i> grown in LB broth containing NaCIO<sub>4</sub> at varying concentrations. Cells were grown in 96-well plate format in 200 µl volumes at 30 °C over 24 hours. (n=3 replicates, error bars are standard error of the mean).</center></font></p>
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<img src="https://static.igem.org/mediawiki/2018/1/17/T--Newcastle--exeterfig2.png" height="700" width="700"
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<p><font size="2"><center>Figure 2. <i>Azospirillum brasilense</i> grown in LB broth containing NaCIO<sub>4</sub> at varying concentrations. Cells were grown in 96-well plate format in 200 µl volumes at 30 °C over 24 hours. (n=3 replicates, error bars are standard error of the mean).</center></font></p>
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<img src="https://static.igem.org/mediawiki/2018/6/61/T--Newcastle--exeterfig3.png" height="1700" width="700">
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<p><font size="2"><center>Figure 3. <i>Herbosporillum seropedicae</i> grown in LB broth containing NaCIO<sub>4</sub> at varying concentrations. Cells were grown in 96-well plate format in 200 µl volumes at 30 °C over 24 hours. (n=3 replicates, error bars are standard error of the mean).</center></font></p>
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                <h1 class="display-2">Sorbonne Université Paris</h1>
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                    <p><font size="3"><br><br>One of our team members has a friend at <a href="https://2018.igem.org/Team:Sorbonne_U_Paris/Collaborations" class="black">Sorbonne</a>, who kindly put us in contact with their iGEM team. As they knew we have architecture students in the team they asked us to produce a visual for their human practices.
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They sent us over an initial sketch, once this was received we used our imaginations and attempted to visualise this part of their project for them. The image shows a semi-permeable membrane which would contain their genetically modified bacteria, anchored to the sea bed - but not so deep that they wouldn’t receive any light. This would prevent their bacteria from being released into the environment. <br>
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                <h1 class="display-2" style="margin-bottom:0px" >University of Warwick</h1>
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                    <p><font size="3"><br><br>To aid <a href="https://2018.igem.org/Team:Warwick/Collaborations" class="black">Warwick</a> in their project we collected a series of water samples from bodies of water in areas surrounding Newcastle.
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                <h1 class="display-2">References & Attributions</h1>
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<p class="about-para"><font size="2"><strong>Attributions: Frank Eardley, Sadiya Quazi, Chris Carty, Lewis Tomlinson and Will Tankard
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<br>
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</strong><font></p>
  
<h4> Which other teams can we work with? </h4>
 
<p>
 
You can work with any other team in the competition, including software, hardware, high school and other tracks. You can also work with non-iGEM research groups, but they do not count towards the iGEM team collaboration silver medal criterion.
 
</p>
 
  
<p>
 
In order to meet the silver medal criteria on helping another team, you must complete this page and detail the nature of your collaboration with another iGEM team.
 
</p>
 
  
</div>
 
  
  
  
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<p>
 
Here are some suggestions for projects you could work on with other teams:
 
</p>
 
  
<ul>
 
<li> Improve the function of another team's BioBrick Part or Device</li>
 
<li> Characterize another team's part </li>
 
<li> Debug a construct </li>
 
<li> Model or simulate another team's system </li>
 
<li> Test another team's software</li>
 
<li> Help build and test another team's hardware project</li>
 
<li> Mentor a high-school team</li>
 
</ul>
 
 
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Latest revision as of 02:15, 18 October 2018

Alternative Roots/Protocols

University of Exeter



Perchlorate salts are found in the Martian regolith covering the surface of Mars at a concentration of up to 1 %. Perchlorate is a highly oxidising compound used in rocket fuels and munitions. It is dangerous and toxic to humans. Current disposal methods are via expensive bioreactors, or contained explosions. So, if humans are to colonise Mars, we will have to remove the perchlorates from the soil in order to have a chance of developing agriculture for our survival. The University of Exeter 2018 iGEM Team are developing a bioreactor that will remove perchlorate salts from soil, and dispose of waste perchlorate in a cheap, safe manner, by using genetically engineered bacteria with (per)chlorate and chlorite reducing enzymes.

To assist their project, we have recorded the affects of perchlorate on the growth of our free-living nitrogen fixing, soil bacteria. This has helped show the importance of their project in aiding the development of agricultural methods on Mars, as well as disposing of perchlorate in a safe, contained way so as not to harm the environment and affect soil ecosystems. The results of our experiments are displayed in Figures 1 to 3.

Figure 1. Azorhizobium caulidolens grown in LB broth containing NaCIO4 at varying concentrations. Cells were grown in 96-well plate format in 200 µl volumes at 30 °C over 24 hours. (n=3 replicates, error bars are standard error of the mean).

Figure 2. Azospirillum brasilense grown in LB broth containing NaCIO4 at varying concentrations. Cells were grown in 96-well plate format in 200 µl volumes at 30 °C over 24 hours. (n=3 replicates, error bars are standard error of the mean).

Figure 3. Herbosporillum seropedicae grown in LB broth containing NaCIO4 at varying concentrations. Cells were grown in 96-well plate format in 200 µl volumes at 30 °C over 24 hours. (n=3 replicates, error bars are standard error of the mean).

Sorbonne Université Paris



One of our team members has a friend at Sorbonne, who kindly put us in contact with their iGEM team. As they knew we have architecture students in the team they asked us to produce a visual for their human practices. They sent us over an initial sketch, once this was received we used our imaginations and attempted to visualise this part of their project for them. The image shows a semi-permeable membrane which would contain their genetically modified bacteria, anchored to the sea bed - but not so deep that they wouldn’t receive any light. This would prevent their bacteria from being released into the environment.

University of Warwick




To aid Warwick in their project we collected a series of water samples from bodies of water in areas surrounding Newcastle.







References & Attributions

Attributions: Frank Eardley, Sadiya Quazi, Chris Carty, Lewis Tomlinson and Will Tankard