Difference between revisions of "Team:NCKU Tainan/Safety"

 
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            <div class="headstyle">
        <h1 class="head4">Biosafety</h1>
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                <h1 class="head">Biosafety</h1>
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            </div>
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            <div class="righttitle">
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                <h6 class="subtitle">Foresee Danger and Take Precautions</h6>
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                             </br></br></br></br>
 
                             </br></br></br></br>
                             <p class="pcontent">NCKU-iGEM team is concerned with biosafety and biosecurity in every
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                             <p class="pcontent">NCKU-iGEM team is concerned with biosafety and biosecurity in every aspect of our project. We realize one major responsibility of iGEMers is to show the public that engineering microorganisms will not do harm to the environment and the society. We worked hard to ensure the safety of our materials, lab, designed device, and every team member.
                                aspect of our project. We realize one major responsibility of iGEMers is to show
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</p></br>
                                the public that the project as well as synthetic will not do harm to the
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                                environment and the society. We make checks on every safety detail including
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                                materials, lab, designed device, and every team member.</p></br>
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                             <div id="Biosafety">
 
                             <div id="Biosafety">
                                 </br></br></br></br>
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                                 <h3>Biosafety</h3></br>
                                 <h3>1. Material and project safety? OF COURSE</h3>
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                                 <h8>1. Material and project safety? OF CO<sub>2</sub>URSE</h8>
 
                                 <div id="pt">
 
                                 <div id="pt">
 
                                     </br></br>
 
                                     </br></br>
 
                                     <h8>Chassis organism</h8></br>
 
                                     <h8>Chassis organism</h8></br>
                                     <p class="pcontent">We chose E. coli as our chassis organism. Three lab strains
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                                     <p class="pcontent">
                                         were selected: “DH5 alpha”, “BL21(DE3)”, “W3110”, and ”W3110 (L5T7)”. These lab
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                                        We chose <i>E. coli</i> as our chassis organism. Three lab strains
                                         strains are reported to be not pathogenic to human. We construct our design
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                                         were selected: “BL21(DE3)”, “W3110”, and ”W3110 (L5T7)”. These lab
                                        with these strains in authorized lab (biosafety level 1 lab) only.</p></br>
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                                         strains are reported to be not pathogenic to human. We worked these strains in authorized labs (biosafety level 1 lab and higher) only.
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                                    </p></br>
 
                                 </div>
 
                                 </div>
  
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                                     </br></br>
 
                                     </br></br>
 
                                     <h8>New parts construction</h8></br>
 
                                     <h8>New parts construction</h8></br>
                                     <p class="pcontent">We chose E. coli as our chassis organism. Three lab strains
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                                     <p class="pcontent">
                                        were selected: “DH5 alpha”, “BL21(DE3)”, “W3110”, and ”W3110 (L5T7)”. These lab
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                                    Three new basic parts with open reading frame were created in our project, which are Rubisco, prk, and CA. Three genes are derived from <i>Synechococcus elongatus</i> PCC 7002 and <i>Synechococcus elongatus</i> PCC 7942, which belong to biosafety  
                                        strains are reported to be not pathogenic to human. We construct our design
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level 1 nonpathogenic cyanobacteria.
                                        with these strains in authorized lab (biosafety level 1 lab) only.</p></br>
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                                    </p></br>
 
                                 </div>
 
                                 </div>
  
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                                 </br></br></br></br>
 
                                 </br></br></br></br>
                                 <h3>2. Establishment of the iGEM lab</h3>
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                                 <h8>2. Establishment of the iGEM lab</h8></br>
 
                                 <div id="pt">
 
                                 <div id="pt">
                                     <p class="pcontent">This is the third year since the establishment of iGEM
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                                     <p class="pcontent">
                                        NCKU-Tainan team. We have raised the awareness of synthetic biology in our
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                                        This is the third year since the establishment of iGEM NCKU Tainan team. We have raised the awareness of synthetic biology in our campus. NCKU President Dr. Jenny Su and Dean of College of Engineering promised to provide us with a headquarter, including a meeting room and a lab. To meet the lab standard of Taiwan CDC (Center for Disease Control), we contacted with Mrs. Liu Yee Fen, the contact person of Center for Occupational Safety and Health and Environmental Protection, which is the authorized unit in NCKU responsible for lab safety and security. With the assistance of our PI, Pror. Ng, we successfully certified our lab to BSL-1, safety level one. Mrs. Liu gave us some lab security instructions and advice. Each of our members should attend the biosafety lab training program.
                                        campus. Mrs. Jenny Su and the College of Engineering decided to give us a
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                                        headquarter which contains a meeting room and a lab. To meet the lab standard
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                                        of CDC (Center for Disease Control), we made contact with Mrs. Liu Yee Fen, the
+
                                        contact person of Center for Occupational safety and Health and Environmental
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                                        Protection, which is the authorized unit in our campus responsible for lab
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                                        safety and security. With the assistance of our instructor Dr. Ng, we
+
                                        successfully certify our lab to BSL1 saftey level one lab. Mrs. Liu gave us
+
                                        some lab security instructions and advice. She also suggested that each of our
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                                        members should attend the biosafety lab training program.
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                                     </p>
 
                                     </p>
 
                                 </div>
 
                                 </div>
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                                <img class="contentimg col-6" src="https://static.igem.org/mediawiki/2018/9/95/T--NCKU_Tainan--safety_biosafety.jpg">
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                                <img class="contentimg col-6" src="https://static.igem.org/mediawiki/2018/9/90/T--NCKU_Tainan--safety_biosafety2.jpg">
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<p class="pcenter"> Fig 1. Pictures of NCKU Tainan team headquarter  </p> 
  
 
                                 <div id="pt">
 
                                 <div id="pt">
                                     <p class="pcontent">Expect the lab in iGEM headquarter, wet team has constructed
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                                     <p class="pcontent">In addition to the lab in iGEM headquarter, the wet lab team also performed experiments in various labs whose supervisors are Prof. I-Son Ng, Prof. I-Hsiu Huang, Prof. Han-Ching Wang, and Prof. Hashimoto Masayuki. The labs mentioned have all been certified as biosafety level one or two.
                                        out design in various labs whose supervisors are Dr. I-Son Ng, Dr. I-Hsiu
+
</p></br>
                                        Huang, Dr. Han-Ching Wang, and Dr. Hashimoto Masayuki. The labs mentioned above
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                                        are all certified biosafety level one.</p></br>
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                                 </div>
 
                                 </div>
  
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                                 </br></br></br></br>
 
                                 </br></br></br></br>
                                 <h3>3. Safety training for every teammate</h3>
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                                 <h8>3. Safety training for every teammate</h8>
 
                                 <div id="pt">
 
                                 <div id="pt">
                                     <p class="pcontent">It is a must for anyone to pass the authorized training section
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                                     <p class="pcontent">It is a must for anyone to pass the authorized training session before conducting any experiments in the lab. Since our applied design must be tested with the constructed bacteria, all of our team members will be exposed to the lab. We, therefore, decided that the whole team should be certified to do the experiments in biosafety level one lab. Team members from biotechnology have already passed the training session, and the rest of team members have passed the training online course. We believe that learning safety and security knowledge could lower the risk when we conducted experiments inside a lab.</br></p>
                                        before conducting any experiments in lab. Since our applied design must be
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                                        tested with constructed bacteria, each of our team members will have chances to
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                                        approach the lab. We decided that whole team should be certified to do the
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                                        experiments in biosafety level one lab. Team members from biotechnology have
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                                        already passed the training session, and the rest of team members have passed
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                                        the training online course. We believe that learning safety and security
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                                        knowledge lower the risk when we conducted experiments inside biolab.</br></p>
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                                 </div>
 
                                 </div>
  
 
                                 </br></br>
 
                                 </br></br>
                                 <img class="contentimg" src="https://static.igem.org/mediawiki/2018/d/d8/T--NCKU_Tainan--home_safety.png">
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                                 <img class="contentimg sfp" src="https://static.igem.org/mediawiki/2018/d/d8/T--NCKU_Tainan--home_safety.png">
                            </div>
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          <p class="pcenter"> Fig 2. Certificate of online course</p>                 
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</div>
  
 
                             <div id="Safety_Design">
 
                             <div id="Safety_Design">
                                 </br></br></br></br>
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                                 <h3>Safety Design</h3>
                                <h1 class="head4">Safety Design</h1>
+
 
                                 <div id="pt"></br>
 
                                 <div id="pt"></br>
                                     <p class="pcontent">The goal of our project is to fix CO2 emitted from industries
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                                     <p class="pcontent">
                                        by
+
                                        The goal of our project is to utilize CO<sub>2</sub> emitted from industries by using modified <i>E. coli</i> , which has high potential to produce valuable byproducts. At the same time, we are aware of the safety concerns of introducing synthetic organisms into the environment. We designed a bioreactor that ensures the engineered <i>E. coli</i> in maintained in a closed system separated from the environment. Each inlet and outlet of the bioreactor is equipped with a filter to prevent the outflow of the engineered bacteria.
                                        using modified E.coli and produce high value compound. At the same time, we
+
                                    </p></br></br>
                                        aware
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                                        of the safety concerns of introducing synthetic organisms into the environment.
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                                        We
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                                        designed a bioreactor that ensures the engineered E.coli act as a closed system
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                                        and
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                                        separated from the environment. Each inlet and outlet of the bioreactor is
+
                                        equipped
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                                        with filter too. Furthermore, uv or heat(尚未完成)</p></br></br>
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                                 </div>
 
                                 </div>
 
                             </div>
 
                             </div>
  
 
                             <div id="Biosafety_Test">
 
                             <div id="Biosafety_Test">
                                 </br></br></br></br>
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                                 <h3>Biosafety Test</h3>
                                <h1 class="head4">Biosafety Test</h1>
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                                 <div id="pt"></br>
 
                                 <div id="pt"></br>
                                     <p class="pcontent">
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                                     <p class="pcontent">        
                                        The goal of our project is to fix CO2 emitted from industries by using modified
+
                                         We tested the safety of our device by incubating bacteria inside. We collected the waste sample from the filter and checked for bacterial growth. Comparing with the control group that does not pass the filter, we found out that the filter can effectively isolate the bacteria inside our device.
                                        E.coli and produce high value compound. At the same time, we aware of the
+
 
                                        safety
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                                        concerns of introducing synthetic organisms into the environment. We designed a
+
                                        bioreactor that ensures the engineered E.coli act as a closed system and
+
                                        separated
+
                                        from the environment. Each inlet and outlet of the bioreactor is equipped with
+
                                        filter too which prevents the outflow of the engineered bacteria.
+
                                         We tested the safety of our device by incubating bacteria inside. We collected
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                                        the
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                                        waste sample from the filter and apply it on to the agar plate. Comparing with
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                                        the
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                                        control group that does not passed the filter, we found out that the filter can
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                                        effectively isolate the bacteria inside our device.
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                                     </p></br></br>
 
                                     </p></br></br>
  
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                                     <img class="contentimg col-6" src="https://static.igem.org/mediawiki/2018/9/97/T--NCKU_Tainan--home_42885010_1830869360314589_164317661969252352_n.jpg">
 
                                     <img class="contentimg col-6" src="https://static.igem.org/mediawiki/2018/9/97/T--NCKU_Tainan--home_42885010_1830869360314589_164317661969252352_n.jpg">
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<p class="pcenter"> Fig 3. Result of biosafety tests with our bioreactor</p> 
  
 
                                     <p class="pcontent">
 
                                     <p class="pcontent">
                                         In our applied design, we planned to extract protein and bioproduct from E.
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                                         In our product design, we planned to extract protein and bioproduct from <i>E. coli</i>. The waste should be then collected and sterilized. We planned to combine the waste heat recovery system in the factory to sterilize the waste medium. One of the many goals of our product design; to turn waste into valuable resource, has been fulfilled by this biosafety design.  
                                        coli .
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                                        The waste should be then collected and stertilized. We planned to combine the
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                                        waste
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                                        heat recovery system in the factory to stertilize the waste medium . One of the
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                                        main goal of our applied design, to turn waste to valuable resource, is
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                                        fulfilled
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                                        in this biosafety design.
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                                     </p>
 
                                     </p>
 
                                     </br></br></br></br>
 
                                     </br></br></br></br>
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