Difference between revisions of "Team:NCTU Formosa/Wet Lab/Safety"

 
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       <img class="cover" src="https://static.igem.org/mediawiki/2018/c/cf/T--NCTU_Formosa--Safety.png">
 
       <img class="cover" src="https://static.igem.org/mediawiki/2018/c/cf/T--NCTU_Formosa--Safety.png">
 
     </div>
 
     </div>
     <div class="sec1" style="background-color:#e5f1f7;">
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     <div class="sec1" style="background-color:#ffffff;">
 
       <div class="title"><p>Overview</p></div>
 
       <div class="title"><p>Overview</p></div>
 
       <div class="text">
 
       <div class="text">
         <p>No matter how great our products, the most important thing that we need to concern is the safety of the users, producers, and the environment. Bacteriocins are natural peptides and degrade quickly in the environment. However, we need to confirm that the modified <i>E.coli</i> won’t spray into the environment, thus, we cut into 3 aspects to ensure the safety of our product: the training of the experimenter, the level and the rule of the laboratory, and the safety of our final products used in the environment.</p>
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         <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Our system provides a nice bio-stimulator, bacterioicn, which shows the antimicrobial activity against specific strains. Since we plan to utilize our product into reality, we have to make sure that these peptides will not cause any safety problems and our modified bacteria will not be spread into the environment.</p>
 +
        <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Bacteriocins are natural peptides and degrade quickly in the environment. Therefore, the most important thing we need to confirm is the modified <i>E. coli</i>. Thus, we cut into different aspects to ensure the safety of our product: the training of the experimenter, the level and the rule of the laboratory, and the safety of our final products using in the environment.</p>
 
       </div>
 
       </div>
 
     </div>
 
     </div>
     <div class="sec2" style="background-color:#e5f1f7;">
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     <div class="sec2" style="background-color:#ffffff;">
 
       <div class="title"><p>Safety Training and Laboratory</p></div>
 
       <div class="title"><p>Safety Training and Laboratory</p></div>
 
       <div class="text">
 
       <div class="text">
         <p>Because the modified <i>E.coli</i> may be harmful when released to the environment, our experiments are done in the BSL2 laboratory. All of our team members receive several training courses and pass exams offered by Laboratory Management System before entering the laboratory. Each member must wear the lab coat, trousers, gloves, surgical masks, and shoes when carrying out experiments. Before and after the experiments, we have to use ethanol to clean the gloves and the experiment table. Everybody strictly follow the experimental procedure and never carry anything out of the lab.</p>
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         <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Because the modified <i>E. coli</i> may be harmful when released to the environment, our experiments are done in the BSL2 laboratory. All of our team members receive several training courses and pass exams offered by Laboratory Management System before entering the laboratory. Each member must wear the lab coat, trousers, gloves, surgical masks, and shoes when carrying out experiments. Before and after the experiments, we have to use ethanol to clean the gloves and the experiment table. Everybody strictly follow the experimental procedure and never carry anything out of the lab.</p>
 
       </div>
 
       </div>
 
     </div>
 
     </div>
     <div class="sec3" style="background-color:#e5f1f7;">
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     <div class="sec3" style="background-color:#ffffff;">
 
       <div class="title"><p>Confirm the Safety of Bio-stimulator</p></div>
 
       <div class="title"><p>Confirm the Safety of Bio-stimulator</p></div>
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      <div class="title_3"><p>High-temperature Sterilization Target on Modified <i>E. coli</i> BL21 Rosetta-gami</p></div>
 
       <div class="text">
 
       <div class="text">
         <p>In the future, we are going to spray our Bio-stimulator into the environment. To make sure whether the bacteria contain anti-microbial peptide will not exist in the final product, we design the processing standards in the laboratory.</p>
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         <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;In the future, we are going to spray our bio-stimulator into the environment. To make sure whether the bacteria contain anti-microbial peptide will not exist in the final product, we design the processing standards in the laboratory.</p>
 
       </div>
 
       </div>
    </div>
 
    <div class="sec4" style="background-color:#e5f1f7;">
 
      <div class="title_1"><p>High-temperature Sterilization<br>Target on Modified <i>E.coli</i> ER2566</p></div>
 
 
       <div class="text">
 
       <div class="text">
         <p>Because our bacteriocins are heat stable, we use high-temperature sterilization to make sure our bacteriocins would not contain any alive <i>E. coli</i>. In order to prove our theory is right. We boiled our bacteriocins for 15, 30, and 45 minutes, and put them on LB Agar plate and cultured it at 37℃ for 16 hours. Compared with the sample which is not boiled, the figure shows the result of the plate and we can see that the boiled samples have no alive bacteria exist.
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         <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Bacteriocins are usually heat stable, we use high-temperature sterilization to double make sure our peptide solution does not contain any living <i>E. coli</i>. However, peptides may degrades after long time sterilization. To find out the best fitted time for sterilization, we boiled our bacteriocins for 0, 15, 30, and 45 minutes, and put them on LB Agar plate and cultured it at 37℃ for 16 hours.</p>
However, we still need to check whether our protein is degraded after boiling. We do SDS-PAGE to test the above samples. The result shows that the peptide doesn’t degrade after boiling for such a long time. Thus, we can produce the efficient products while preserving the safety of them. </p>
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        <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;These are the results of the plates, we can easily observe that the bacteria exists only in the sample that is not boiled. After fifteen minutes of sterilization, there are no alive bacteria exist.</p>
 
       </div>
 
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       <img src="https://static.igem.org/mediawiki/2018/7/71/T--NCTU_Formosa--Safety_96_B.png" class="sds">
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       <img src="https://static.igem.org/mediawiki/2018/e/e6/T--NCTU_Formosa--96_safety_plate.png" class="sds_1">
       <div class="explanation">
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      <img src="https://static.igem.org/mediawiki/2018/9/9e/T--NCTU_Formosa--B_safety_plate.png" class="sds_2">
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       <div class="explanation"><p>
 
         <svg class="icon" aria-hidden="true" data-prefix="fas" data-icon="arrow-circle-up" class="svg-inline--fa fa-arrow-circle-up fa-w-16" role="img" xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512"><path fill="currentColor" d="M8 256C8 119 119 8 256 8s248 111 248 248-111 248-248 248S8 393 8 256zm143.6 28.9l72.4-75.5V392c0 13.3 10.7 24 24 24h16c13.3 0 24-10.7 24-24V209.4l72.4 75.5c9.3 9.7 24.8 9.9 34.3.4l10.9-11c9.4-9.4 9.4-24.6 0-33.9L273 107.7c-9.4-9.4-24.6-9.4-33.9 0L106.3 240.4c-9.4 9.4-9.4 24.6 0 33.9l10.9 11c9.6 9.5 25.1 9.3 34.4-.4z"></path></svg>
 
         <svg class="icon" aria-hidden="true" data-prefix="fas" data-icon="arrow-circle-up" class="svg-inline--fa fa-arrow-circle-up fa-w-16" role="img" xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512"><path fill="currentColor" d="M8 256C8 119 119 8 256 8s248 111 248 248-111 248-248 248S8 393 8 256zm143.6 28.9l72.4-75.5V392c0 13.3 10.7 24 24 24h16c13.3 0 24-10.7 24-24V209.4l72.4 75.5c9.3 9.7 24.8 9.9 34.3.4l10.9-11c9.4-9.4 9.4-24.6 0-33.9L273 107.7c-9.4-9.4-24.6-9.4-33.9 0L106.3 240.4c-9.4 9.4-9.4 24.6 0 33.9l10.9 11c9.6 9.5 25.1 9.3 34.4-.4z"></path></svg>
         Figure 1: SDS-PAGE gel and the concentrations of boiling test to bacteriocins.<p> (A) Enterocin 96+intein+CBD(35.9kDa) (B) Enteroicin B+intein+CBD(35.5kDa)</p>
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         Figure 1: Confirm <i>E. coli</i> BL21 Rosetta-gami doesn’t grow in LB Agar plate after high-temperature sterilization.<br>Samples are Enterocin 96 + intein + CBD(35.9 kDa) and Enteroicin B + intein + CBD(35.5 kDa)
 +
      </p>
 
       </div>
 
       </div>
       <img src="https://static.igem.org/mediawiki/2018/1/10/T--NCTU_Formosa--Safety_Bov_Dur.png" class="sds">
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       <img src="https://static.igem.org/mediawiki/2018/a/a2/T--NCTU_Formosa--Bov_safety_plate.png" class="sds_1">
       <div class="explanation">
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      <img src="https://static.igem.org/mediawiki/2018/3/33/T--NCTU_Formosa--Dur_safety_plate.png" class="sds_2">
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       <div class="explanation"><p>
 
         <svg class="icon" aria-hidden="true" data-prefix="fas" data-icon="arrow-circle-up" class="svg-inline--fa fa-arrow-circle-up fa-w-16" role="img" xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512"><path fill="currentColor" d="M8 256C8 119 119 8 256 8s248 111 248 248-111 248-248 248S8 393 8 256zm143.6 28.9l72.4-75.5V392c0 13.3 10.7 24 24 24h16c13.3 0 24-10.7 24-24V209.4l72.4 75.5c9.3 9.7 24.8 9.9 34.3.4l10.9-11c9.4-9.4 9.4-24.6 0-33.9L273 107.7c-9.4-9.4-24.6-9.4-33.9 0L106.3 240.4c-9.4 9.4-9.4 24.6 0 33.9l10.9 11c9.6 9.5 25.1 9.3 34.4-.4z"></path></svg>
 
         <svg class="icon" aria-hidden="true" data-prefix="fas" data-icon="arrow-circle-up" class="svg-inline--fa fa-arrow-circle-up fa-w-16" role="img" xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512"><path fill="currentColor" d="M8 256C8 119 119 8 256 8s248 111 248 248-111 248-248 248S8 393 8 256zm143.6 28.9l72.4-75.5V392c0 13.3 10.7 24 24 24h16c13.3 0 24-10.7 24-24V209.4l72.4 75.5c9.3 9.7 24.8 9.9 34.3.4l10.9-11c9.4-9.4 9.4-24.6 0-33.9L273 107.7c-9.4-9.4-24.6-9.4-33.9 0L106.3 240.4c-9.4 9.4-9.4 24.6 0 33.9l10.9 11c9.6 9.5 25.1 9.3 34.4-.4z"></path></svg>
         Figure 2: SDS-PAGE gel and the concentrations of boiling test to bacteriocins.<p>(C)Bovicin HJ50+intein +CBD(34.25kDa) (D) Durancin +intein+CBD(35.3kDa)</p>
+
         Figure 2: Confirm <i>E. coli</i>  BL21 Rosetta-gami doesn’t grow in LB Agar plate after high-temperature sterilization.<br>Samples are Bovicin HJ50 + intein + CBD(34.25 kDa) and Durancin + intein + CBD(35.3 kDa).
 +
      </p>
 
       </div>
 
       </div>
       <img src="https://static.igem.org/mediawiki/2018/4/42/T--NCTU_Formosa--Safety_Lac.png" class="sds">
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       <img src="https://static.igem.org/mediawiki/2018/1/12/T--NCTU_Formosa--Lac_safety_plate.png" class="sds_1">
       <div class="explanation">
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      <img src="https://static.igem.org/mediawiki/2018/e/e3/T--NCTU_Formosa--Lu_safety_plate.png" class="sds_2">
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       <div class="explanation"><p>
 
         <svg class="icon" aria-hidden="true" data-prefix="fas" data-icon="arrow-circle-up" class="svg-inline--fa fa-arrow-circle-up fa-w-16" role="img" xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512"><path fill="currentColor" d="M8 256C8 119 119 8 256 8s248 111 248 248-111 248-248 248S8 393 8 256zm143.6 28.9l72.4-75.5V392c0 13.3 10.7 24 24 24h16c13.3 0 24-10.7 24-24V209.4l72.4 75.5c9.3 9.7 24.8 9.9 34.3.4l10.9-11c9.4-9.4 9.4-24.6 0-33.9L273 107.7c-9.4-9.4-24.6-9.4-33.9 0L106.3 240.4c-9.4 9.4-9.4 24.6 0 33.9l10.9 11c9.6 9.5 25.1 9.3 34.4-.4z"></path></svg>
 
         <svg class="icon" aria-hidden="true" data-prefix="fas" data-icon="arrow-circle-up" class="svg-inline--fa fa-arrow-circle-up fa-w-16" role="img" xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512"><path fill="currentColor" d="M8 256C8 119 119 8 256 8s248 111 248 248-111 248-248 248S8 393 8 256zm143.6 28.9l72.4-75.5V392c0 13.3 10.7 24 24 24h16c13.3 0 24-10.7 24-24V209.4l72.4 75.5c9.3 9.7 24.8 9.9 34.3.4l10.9-11c9.4-9.4 9.4-24.6 0-33.9L273 107.7c-9.4-9.4-24.6-9.4-33.9 0L106.3 240.4c-9.4 9.4-9.4 24.6 0 33.9l10.9 11c9.6 9.5 25.1 9.3 34.4-.4z"></path></svg>
         Figure 3: SDS-PAGE gel and the concentrations of boiling test to bacteriocins.<p>(E) Lacticin+intein+CBD(33.9kDa)</p>
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         Figure 3: Confirm <i>E. coli</i> BL21 Rosetta-gami doesn’t grow in LB Agar plate after high-temperature sterilization.<br>Samples are Lacticin + intein + CBD(33.9 kDa) and Leucocyclicin Q + intein + CBD(34.4 kDa).
 +
      </p>
 
       </div>
 
       </div>
       <div class="explanation">
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       <div class="text">
         <svg class="icon" aria-hidden="true" data-prefix="fas" data-icon="arrow-circle-up" class="svg-inline--fa fa-arrow-circle-up fa-w-16" role="img" xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512"><path fill="currentColor" d="M8 256C8 119 119 8 256 8s248 111 248 248-111 248-248 248S8 393 8 256zm143.6 28.9l72.4-75.5V392c0 13.3 10.7 24 24 24h16c13.3 0 24-10.7 24-24V209.4l72.4 75.5c9.3 9.7 24.8 9.9 34.3.4l10.9-11c9.4-9.4 9.4-24.6 0-33.9L273 107.7c-9.4-9.4-24.6-9.4-33.9 0L106.3 240.4c-9.4 9.4-9.4 24.6 0 33.9l10.9 11c9.6 9.5 25.1 9.3 34.4-.4z"></path></svg>
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         <p>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;We also ran SDS-PAGE to check the degradation of bacteriocins. The result showed that the peptide didn’t degrade after boiling in 45 minutes. We chose Enterocin 96 and Enterocin B as the representatives. From this, we deduced similar results from the other bacteriocins.</p>
        Figure 4: SDS-PAGE gel and the concentrations of boiling test to bacteriocins.<p>(F) Leucocyclicin Q+intein+CBD(34.4kDa)</p>
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       </div>
 
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       <img src="https://static.igem.org/mediawiki/2018/e/e6/T--NCTU_Formosa--96_safety_plate.png" class="sds_1">
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       <img src="https://static.igem.org/mediawiki/2018/5/52/T--NCTU_Formosa--96_B_safetySDS.png" class="sds">
       <img src="https://static.igem.org/mediawiki/2018/9/9e/T--NCTU_Formosa--B_safety_plate.png" class="sds_1">
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       <div class="explanation"><p>
      <div class="explanation">
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         <svg class="icon" aria-hidden="true" data-prefix="fas" data-icon="arrow-circle-up" class="svg-inline--fa fa-arrow-circle-up fa-w-16" role="img" xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512"><path fill="currentColor" d="M8 256C8 119 119 8 256 8s248 111 248 248-111 248-248 248S8 393 8 256zm143.6 28.9l72.4-75.5V392c0 13.3 10.7 24 24 24h16c13.3 0 24-10.7 24-24V209.4l72.4 75.5c9.3 9.7 24.8 9.9 34.3.4l10.9-11c9.4-9.4 9.4-24.6 0-33.9L273 107.7c-9.4-9.4-24.6-9.4-33.9 0L106.3 240.4c-9.4 9.4-9.4 24.6 0 33.9l10.9 11c9.6 9.5 25.1 9.3 34.4-.4z"></path></svg>
 
         <svg class="icon" aria-hidden="true" data-prefix="fas" data-icon="arrow-circle-up" class="svg-inline--fa fa-arrow-circle-up fa-w-16" role="img" xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512"><path fill="currentColor" d="M8 256C8 119 119 8 256 8s248 111 248 248-111 248-248 248S8 393 8 256zm143.6 28.9l72.4-75.5V392c0 13.3 10.7 24 24 24h16c13.3 0 24-10.7 24-24V209.4l72.4 75.5c9.3 9.7 24.8 9.9 34.3.4l10.9-11c9.4-9.4 9.4-24.6 0-33.9L273 107.7c-9.4-9.4-24.6-9.4-33.9 0L106.3 240.4c-9.4 9.4-9.4 24.6 0 33.9l10.9 11c9.6 9.5 25.1 9.3 34.4-.4z"></path></svg>
         Figure 5: LB Agar plate of boiling test to Enterocin 96+intein+CBD(35.9kDa) and Enteroicin B+intein+CBD(35.5kDa)
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         Figure 4: Determine the stability of bacteriocins after high-temperature sterilization. The experimental samples are Enterocin 96+intein + CBD (35.9 kDa) and Enterocin B+ intein + CBD (35.5 kDa).<br>
      </div>
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         M: Protein Ladder 5–245 kDa; A: Sample without high-temperature sterilization; B: Sample sterilize at 100℃ for 15 mins; C: Sample sterilize at 100℃ for 30 mins; D: Sample sterilize at 100℃ for 45 mins.</p>
      <img src="https://static.igem.org/mediawiki/2018/a/a2/T--NCTU_Formosa--Bov_safety_plate.png" class="sds_1">
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      <img src="https://static.igem.org/mediawiki/2018/3/33/T--NCTU_Formosa--Dur_safety_plate.png" class="sds_1">
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      <div class="explanation">
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         <svg class="icon" aria-hidden="true" data-prefix="fas" data-icon="arrow-circle-up" class="svg-inline--fa fa-arrow-circle-up fa-w-16" role="img" xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512"><path fill="currentColor" d="M8 256C8 119 119 8 256 8s248 111 248 248-111 248-248 248S8 393 8 256zm143.6 28.9l72.4-75.5V392c0 13.3 10.7 24 24 24h16c13.3 0 24-10.7 24-24V209.4l72.4 75.5c9.3 9.7 24.8 9.9 34.3.4l10.9-11c9.4-9.4 9.4-24.6 0-33.9L273 107.7c-9.4-9.4-24.6-9.4-33.9 0L106.3 240.4c-9.4 9.4-9.4 24.6 0 33.9l10.9 11c9.6 9.5 25.1 9.3 34.4-.4z"></path></svg>
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        Figure 6: LB Agar plate of boiling test to Bovicin HJ50+intein +CBD(34.25kDa) and Durancin +intein+CBD(35.3kDa)
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      </div>
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      <img src="https://static.igem.org/mediawiki/2018/1/12/T--NCTU_Formosa--Lac_safety_plate.png" class="sds_1">
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      <img src="https://static.igem.org/mediawiki/2018/e/e3/T--NCTU_Formosa--Lu_safety_plate.png" class="sds_1">
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      <div class="explanation">
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        <svg class="icon" aria-hidden="true" data-prefix="fas" data-icon="arrow-circle-up" class="svg-inline--fa fa-arrow-circle-up fa-w-16" role="img" xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512"><path fill="currentColor" d="M8 256C8 119 119 8 256 8s248 111 248 248-111 248-248 248S8 393 8 256zm143.6 28.9l72.4-75.5V392c0 13.3 10.7 24 24 24h16c13.3 0 24-10.7 24-24V209.4l72.4 75.5c9.3 9.7 24.8 9.9 34.3.4l10.9-11c9.4-9.4 9.4-24.6 0-33.9L273 107.7c-9.4-9.4-24.6-9.4-33.9 0L106.3 240.4c-9.4 9.4-9.4 24.6 0 33.9l10.9 11c9.6 9.5 25.1 9.3 34.4-.4z"></path></svg>
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        Figure 7: LB Agar plate of boiling test to Lacticin+intein+CBD(33.9kDa) and Leucocyclicin Q
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Latest revision as of 15:38, 7 December 2018

Navigation Bar Safety

Overview

     Our system provides a nice bio-stimulator, bacterioicn, which shows the antimicrobial activity against specific strains. Since we plan to utilize our product into reality, we have to make sure that these peptides will not cause any safety problems and our modified bacteria will not be spread into the environment.

     Bacteriocins are natural peptides and degrade quickly in the environment. Therefore, the most important thing we need to confirm is the modified E. coli. Thus, we cut into different aspects to ensure the safety of our product: the training of the experimenter, the level and the rule of the laboratory, and the safety of our final products using in the environment.

Safety Training and Laboratory

     Because the modified E. coli may be harmful when released to the environment, our experiments are done in the BSL2 laboratory. All of our team members receive several training courses and pass exams offered by Laboratory Management System before entering the laboratory. Each member must wear the lab coat, trousers, gloves, surgical masks, and shoes when carrying out experiments. Before and after the experiments, we have to use ethanol to clean the gloves and the experiment table. Everybody strictly follow the experimental procedure and never carry anything out of the lab.

Confirm the Safety of Bio-stimulator

High-temperature Sterilization Target on Modified E. coli BL21 Rosetta-gami

     In the future, we are going to spray our bio-stimulator into the environment. To make sure whether the bacteria contain anti-microbial peptide will not exist in the final product, we design the processing standards in the laboratory.

     Bacteriocins are usually heat stable, we use high-temperature sterilization to double make sure our peptide solution does not contain any living E. coli. However, peptides may degrades after long time sterilization. To find out the best fitted time for sterilization, we boiled our bacteriocins for 0, 15, 30, and 45 minutes, and put them on LB Agar plate and cultured it at 37℃ for 16 hours.

     These are the results of the plates, we can easily observe that the bacteria exists only in the sample that is not boiled. After fifteen minutes of sterilization, there are no alive bacteria exist.

Figure 1: Confirm E. coli BL21 Rosetta-gami doesn’t grow in LB Agar plate after high-temperature sterilization.
Samples are Enterocin 96 + intein + CBD(35.9 kDa) and Enteroicin B + intein + CBD(35.5 kDa)

Figure 2: Confirm E. coli BL21 Rosetta-gami doesn’t grow in LB Agar plate after high-temperature sterilization.
Samples are Bovicin HJ50 + intein + CBD(34.25 kDa) and Durancin + intein + CBD(35.3 kDa).

Figure 3: Confirm E. coli BL21 Rosetta-gami doesn’t grow in LB Agar plate after high-temperature sterilization.
Samples are Lacticin + intein + CBD(33.9 kDa) and Leucocyclicin Q + intein + CBD(34.4 kDa).

     We also ran SDS-PAGE to check the degradation of bacteriocins. The result showed that the peptide didn’t degrade after boiling in 45 minutes. We chose Enterocin 96 and Enterocin B as the representatives. From this, we deduced similar results from the other bacteriocins.

Figure 4: Determine the stability of bacteriocins after high-temperature sterilization. The experimental samples are Enterocin 96+intein + CBD (35.9 kDa) and Enterocin B+ intein + CBD (35.5 kDa).
M: Protein Ladder 5–245 kDa; A: Sample without high-temperature sterilization; B: Sample sterilize at 100℃ for 15 mins; C: Sample sterilize at 100℃ for 30 mins; D: Sample sterilize at 100℃ for 45 mins.

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