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− | {{NCKU_Tainan}} | + | {{NCKU_Tainan/header}} {{NCKU_Tainan/navbar}} {{NCKU_Tainan/style}} |
<html> | <html> | ||
+ | <head> | ||
+ | <link rel="stylesheet" href="https://2018.igem.org/Template:NCKU_Tainan/css/model?action=raw&ctype=text/css"> | ||
+ | </head> | ||
+ | <body data-spy="scroll" data-target=".navbar-example"> | ||
+ | <div class="container content"> | ||
+ | <h1 class="head">Model</h1> | ||
+ | <div class="navbar-example"> | ||
+ | <div class="row"> | ||
+ | <div class="col-2 side"> | ||
+ | <div id="sidelist" class="list-group"> | ||
+ | <a class="list-group-item list-group-item-action" href="#achievement">Achievement</a> | ||
+ | <a class="list-group-item list-group-item-action" href="#purpose">Purpose</a> | ||
+ | <a class="list-group-item list-group-item-action" href="#CO2_uptake">CO<sub>2</sub> uptake</a> | ||
+ | <a class="list-group-item list-group-item-action" href="#CO2_metabolism">CO<sub>2</sub> metabolism</a> | ||
+ | <a class="list-group-item list-group-item-action" href="#CO2_vs_xylose">Analysis</a> | ||
+ | <a class="list-group-item list-group-item-action" href="#reference">Reference</a> | ||
+ | <a class="list-group-item list-group-item-action" href="#"><i class="fa fa-arrow-up fa-1x" aria-hidden="true"></i></a> | ||
+ | </div> | ||
+ | </div> | ||
+ | <div class="col-10"> | ||
+ | <div data-spy="scroll" data-target="#sidelist" data-offset="0" class="scrollspy-example"> | ||
+ | <div class="container"> | ||
+ | <div id="achievement"> | ||
+ | <h3>Achievement</h3> | ||
+ | <p></p> | ||
+ | </div> | ||
+ | <div id="purpose"> | ||
+ | <h3>Purpose</h3> | ||
+ | <p></p> | ||
+ | </div> | ||
+ | <div id="CO2_uptake"> | ||
+ | <h3>CO<sub>2</sub> uptake</h3> | ||
+ | <p></p> | ||
+ | <img class="col-md-12 smallimg" src="uptake.png"> | ||
+ | <div> | ||
+ | <a class="btn col-md-12" data-toggle="collapse" href="#co2_uptake" role="button" aria-expanded="false" aria-controls="multiCollapseExample1"> | ||
+ | CO<sub>2</sub> uptake | ||
+ | <i class="fa fa-arrow-down fa-10" aria-hidden="true"></i> | ||
+ | </a> | ||
+ | <div class="collapse multi-collapse" id="co2_uptake"> | ||
+ | <div class="card card-body"> | ||
+ | <table width="100%"> | ||
+ | <tr> | ||
+ | <th colspan="4">CO<sub>2</sub> uptake</th> | ||
+ | <th colspan="2">Kf</th> | ||
+ | <th colspan="2">Kr</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="1">R1</td> | ||
+ | <td colspan="3">$${[CO_2]_{air} \rightarrow [CO_2]_uptake}$$</td> | ||
+ | <td colspan="2">9.23E-04</td> | ||
+ | <td colspan="2">4.78E-04</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="1">R2</td> | ||
+ | <td colspan="3">$${[CO_2]_{uptake} + [H_2O] \rightarrow [H_2CO_3]}$$</td> | ||
+ | <td colspan="2">0.062</td> | ||
+ | <td colspan="2">23.7</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="1">R3</td> | ||
+ | <td colspan="3">$${[H_2CO_3] \rightarrow [H^+] + [HCO_3^-]}$$</td> | ||
+ | <td colspan="2">8000000</td> | ||
+ | <td colspan="2">4.7E10</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="1">R4</td> | ||
+ | <td colspan="3">$${[HCO_3^-] \rightarrow [H^+] + [CO_3^{2-}]}$$</td> | ||
+ | <td colspan="2">3</td> | ||
+ | <td colspan="2">5E10</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="1" rowspan="2">R5</td> | ||
+ | <td colspan="3" rowspan="2">$${[H^+] + [HCO_3^-] \longleftrightarrow [H_2O] + [CO_2]_{uptake}}$$</td> | ||
+ | <td colspan="2">Vmax</td> | ||
+ | <td colspan="2">Km</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="2">0.47333</td> | ||
+ | <td colspan="2">0.0062</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | </div> | ||
+ | </div> | ||
+ | </div> | ||
+ | |||
+ | <div id="CO2_metabolism"> | ||
+ | <h3>CO<sub>2</sub> Metabolism</h3> | ||
+ | <div> | ||
+ | <div class="table"> | ||
+ | <a class="btn col-md-12" data-toggle="collapse" href="#species" role="button" aria-expanded="false" aria-controls="multiCollapseExample1"> | ||
+ | Species | ||
+ | <i class="fa fa-arrow-down fa-10" aria-hidden="true"></i> | ||
+ | </a> | ||
+ | <div class="collapse multi-collapse" id="species"> | ||
+ | <div class="card card-body"> | ||
+ | <table width="100%" class="bbg"> | ||
+ | <tr> | ||
+ | <td>E4P</td> | ||
+ | <td>erythrose-4-phosphate</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>F6P</td> | ||
+ | <td>fructose-6-phosphate</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>FBP</td> | ||
+ | <td>fructose-1,6-bisphosphate</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>G6P</td> | ||
+ | <td>glucose-6-phosphate</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>GAP</td> | ||
+ | <td>glyceraldehyde-3-phosphate</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>PEP</td> | ||
+ | <td>phosphoenol pyruvate</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>PYR</td> | ||
+ | <td>pyruvate</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>R5P</td> | ||
+ | <td>ribose-5-phosphate</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Ru5P</td> | ||
+ | <td>ribulose-5-phosphate</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>S7P</td> | ||
+ | <td>sedoheptulose-7-phosphate</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>X5P</td> | ||
+ | <td>xylulose-5-phosphate</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>6PG</td> | ||
+ | <td>6-phosphogluconate</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>DHAP</td> | ||
+ | <td>Dihydroxyacetone phosphate</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>3PG</td> | ||
+ | <td>3-Phosphoglyceric acid</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>RuBP</td> | ||
+ | <td>ribulose-1,5-bisphosphate</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>PRK</td> | ||
+ | <td>Phosphoribulokinase</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>Rubisco</td> | ||
+ | <td>Ribulose-1,5-bisphosphate carboxylase/ oxygenase</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>AcCoA</td> | ||
+ | <td>Acetyl-CoA</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>CIT</td> | ||
+ | <td>Citrate</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>ICIT</td> | ||
+ | <td>Isocitrate</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>AKG</td> | ||
+ | <td>Alpha-ketoglutarate</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>SUCCoA</td> | ||
+ | <td>Succinyl-CoA</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>SUCC</td> | ||
+ | <td>Succinate</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>FUM</td> | ||
+ | <td>Fumarate</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>MAL</td> | ||
+ | <td>Malate </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>OAA</td> | ||
+ | <td>Oxaloacetic acid</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td>GOX</td> | ||
+ | <td>Glyoxylate</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | </div> | ||
+ | </div> | ||
+ | </div> | ||
+ | <h3>Pathway</h3> | ||
+ | <div> | ||
+ | <img class="col-md-6 smallimg contentimg" src="easy_pathway.png"> | ||
+ | <img class="col-md-6 contentimg" src="model_pathway.png"> | ||
+ | </div> | ||
+ | <div class="table"> | ||
+ | <a class="btn col-md-12" data-toggle="collapse" href="#co2_bypass" role="button" aria-expanded="false" aria-controls="multiCollapseExample1"> | ||
+ | Parameters of CO<sub>2</sub> bypass pathway | ||
+ | <i class="fa fa-arrow-down fa-10" aria-hidden="true"></i> | ||
+ | </a> | ||
+ | <div class="collapse multi-collapse" id="co2_bypass"> | ||
+ | <div class="card card-body"> | ||
+ | <table width="100%"> | ||
+ | <tr> | ||
+ | <th colspan="8">CO<sub>2</sub> bypass pathway</th> | ||
+ | <th colspan="3">Vmax (1/S)</th> | ||
+ | <th colspan="3">KM (mM)</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="2">A1</td> | ||
+ | <td colspan="6">$${Xylose \rightarrow Xylulose}$$ | ||
+ | $${Xylulose + ATP \rightarrow X5P}$$ | ||
+ | </td> | ||
+ | <td colspan="3">0.02456</td> | ||
+ | <td colspan="3">124.55879</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="2">A2</td> | ||
+ | <td colspan="6">$${X5P \rightarrow Ru5P}$$</td> | ||
+ | <td colspan="3">0.08</td> | ||
+ | <td colspan="3">12.5</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="2">A3</td> | ||
+ | <td colspan="6">$${Ru5P \xrightarrow{PRK} RuBP}$$</td> | ||
+ | <td colspan="3">225.81858</td> | ||
+ | <td colspan="3">0.27</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td rowspan="2" colspan="2">A4</td> | ||
+ | <td rowspan="2" colspan="6">$${RuBP + CO_2 \xrightarrow{RuBisCO} 3PG}$$</td> | ||
+ | <td colspan="2">Vmax</td> | ||
+ | <td colspan="2">Krubp</td> | ||
+ | <td colspan="2">KCO<sub>2</sub></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="2">333.33</td> | ||
+ | <td colspan="2">53</td> | ||
+ | <td colspan="2">2.7</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | </div> | ||
+ | </div> | ||
+ | <div class="table"> | ||
+ | <a class="btn col-md-12" data-toggle="collapse" href="#ppp" role="button" aria-expanded="false" aria-controls="multiCollapseExample1"> | ||
+ | Parameters of PPP pathway | ||
+ | <i class="fa fa-arrow-down fa-10" aria-hidden="true"></i> | ||
+ | </a> | ||
+ | <div class="collapse multi-collapse" id="ppp"> | ||
+ | <div class="card card-body"> | ||
+ | <table width="100%"> | ||
+ | <tr> | ||
+ | <th colspan="13">Pentose Phosphate Pathway</th> | ||
+ | <th colspan="6">Vmax (1/S)</th> | ||
+ | <th colspan="6">KM (mM)</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="1">B1</td> | ||
+ | <td colspan="12">$${Ru5P \rightarrow R5P}$$</td> | ||
+ | <td colspan="6">0.13672</td> | ||
+ | <td colspan="6">12.5</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td rowspan="5" colspan="1">B2</td> | ||
+ | <td colspan="24">$${X5P + R5P \rightarrow S7P + GAP}$$</td> </tr> | ||
+ | <tr> | ||
+ | <td colspan="12">$${X5P \rightarrow S7P}$$</td> | ||
+ | <td colspan="6">58.27</td> | ||
+ | <td colspan="6">4.96E-09</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="12">$${X5P \rightarrow GAP}$$</td> | ||
+ | <td colspan="6">58.27</td> | ||
+ | <td colspan="6">48</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="12">$${R5P \rightarrow S7P}$$</td> | ||
+ | <td colspan="6">58.27</td> | ||
+ | <td colspan="6">0.008</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="12">$${R5P \rightarrow GAP}$$</td> | ||
+ | <td colspan="6">58.27</td> | ||
+ | <td colspan="6">3.05E-07</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td rowspan="5" colspan="1">B3</td> | ||
+ | <td colspan="24">$${S7P + GAP \rightarrow F6P + E4P}$$</td> </tr> | ||
+ | <tr> | ||
+ | <td colspan="12">$${S7P \rightarrow E4P}$$</td> | ||
+ | <td colspan="6">58.27</td> | ||
+ | <td colspan="6">2.524</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="12">$${S7P \rightarrow F6P}$$</td> | ||
+ | <td colspan="6">58.27</td> | ||
+ | <td colspan="6">6.10E-09</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="12">$${GAP \rightarrow E4P}$$</td> | ||
+ | <td colspan="6">58.27</td> | ||
+ | <td colspan="6">1.73E-07</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="12">$${GAP \rightarrow F6P}$$</td> | ||
+ | <td colspan="6">58.27</td> | ||
+ | <td colspan="6">8.23E-09</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td rowspan="5" colspan="1">B4</td> | ||
+ | <td colspan="24">$${E4P + X5P \rightarrow F6P + GAP}$$</td> </tr> | ||
+ | <tr> | ||
+ | <td colspan="12">$${E4P \rightarrow F6P}$$</td> | ||
+ | <td colspan="6">1</td> | ||
+ | <td colspan="6">1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="12">$${E4P \rightarrow GAP}$$</td> | ||
+ | <td colspan="6">5.827E-4</td> | ||
+ | <td colspan="6">1.733E-7</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="12">$${X5P \rightarrow F6P}$$</td> | ||
+ | <td colspan="6">0.05827</td> | ||
+ | <td colspan="6">1.733E-7</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="12">$${X5P \rightarrow GAP}$$</td> | ||
+ | <td colspan="6">0.005827</td> | ||
+ | <td colspan="6">48.8</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="1">B5</td> | ||
+ | <td colspan="12">$${FBP \rightarrow GAP}$$</td> | ||
+ | <td colspan="6">135.425</td> | ||
+ | <td colspan="6">4</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td rowspan="2" colspan="1">B6</td> | ||
+ | <td rowspan="2" colspan="12">$${DHAP \longleftrightarrow GAP}$$</td> | ||
+ | <td colspan="3">Vmf</td> | ||
+ | <td colspan="3">Vmr</td> | ||
+ | <td colspan="3">Km<sub>DHAP</sub></td> | ||
+ | <td colspan="3">Km<sub>GAP</sub></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="3">0.2394</td> | ||
+ | <td colspan="3">0.24</td> | ||
+ | <td colspan="3">0.812</td> | ||
+ | <td colspan="3">0.245</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="1">B7</td> | ||
+ | <td colspan="12">$${FBP \rightarrow DHAP}$$</td> | ||
+ | <td colspan="6">0.0001247</td> | ||
+ | <td colspan="6">0.04</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="1">B8</td> | ||
+ | <td colspan="12">$${F6P + ATP \rightarrow FBP + ADP}$$</td> | ||
+ | <td colspan="6">88.2533</td> | ||
+ | <td colspan="6">0.017</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="1">B9</td> | ||
+ | <td colspan="12">$${F6P \rightarrow G6P}$$</td> | ||
+ | <td colspan="6">88.2353</td> | ||
+ | <td colspan="6">0.017</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td rowspan="2" colspan="1">B10</td> | ||
+ | <td rowspan="2" colspan="12">$${G6P + NADP^+ \rightarrow 6PG + NADPH}$$</td> | ||
+ | <td colspan="4">Vmax</td> | ||
+ | <td colspan="4">Km<sub>G6P</sub></td> | ||
+ | <td colspan="4">Km<sub>NADP</sub></td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="4">11.736</td> | ||
+ | <td colspan="4">0.12</td> | ||
+ | <td colspan="4">0.0123</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="1">B11</td> | ||
+ | <td colspan="12">$${6PG + NADP^+ \rightarrow Ru5P + NADPH}$$</td> | ||
+ | <td colspan="6">1.0</td> | ||
+ | <td colspan="6">0.044</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="1">B12</td> | ||
+ | <td colspan="12">$${GAP + NADP^+ + ADP \rightarrow 3PGA + NADPH + ATP}$$</td> | ||
+ | <td colspan="6">0.4</td> | ||
+ | <td colspan="6">0.013</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="1">B13</td> | ||
+ | <td colspan="12">$${3PGA \rightarrow PEP}$$</td> | ||
+ | <td colspan="6">0.43478</td> | ||
+ | <td colspan="6">0.23</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="1">B14</td> | ||
+ | <td colspan="12">$${PEP \rightarrow PYR}$$</td> | ||
+ | <td colspan="6">0.23148</td> | ||
+ | <td colspan="6">0.45</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | </div> | ||
+ | </div> | ||
+ | <div class="table"> | ||
+ | <a class="btn col-md-12" data-toggle="collapse" href="#tca" role="button" aria-expanded="false" aria-controls="multiCollapseExample1"> | ||
+ | Parameters of TCA cycle | ||
+ | <i class="fa fa-arrow-down fa-10" aria-hidden="true"></i> | ||
+ | </a> | ||
+ | <div class="collapse multi-collapse" id="tca"> | ||
+ | <div class="card card-body"> | ||
+ | <table width="100%"> | ||
+ | <tr> | ||
+ | <th colspan="13">TCA cycle</th> | ||
+ | <th colspan="3">Vmf (mM/min)</th> | ||
+ | <th colspan="3">Vmr (mM/min)</th> | ||
+ | <th colspan="3">Ks (mM)</th> | ||
+ | <th colspan="3">Kp (mM)</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="1">C1</td> | ||
+ | <td colspan="12">$${PEP + HCO_3^- + NAD^+ \rightarrow OAA + NADH}$$</td> | ||
+ | <td colspan="3">1</td> | ||
+ | <td colspan="3">1</td> | ||
+ | <td colspan="3">1</td> | ||
+ | <td colspan="3">1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="1">C2</td> | ||
+ | <td colspan="12">$${AcCoA \rightarrow CIT}$$</td> | ||
+ | <td colspan="3">64.8</td> | ||
+ | <td colspan="3">0.648</td> | ||
+ | <td colspan="3">0.05</td> | ||
+ | <td colspan="3">0.12</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="1">C3</td> | ||
+ | <td colspan="12">$${CIT \rightarrow ICIT}$$</td> | ||
+ | <td colspan="3">31.2</td> | ||
+ | <td colspan="3">0.312</td> | ||
+ | <td colspan="3">1.7</td> | ||
+ | <td colspan="3">0.7</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="1">C4</td> | ||
+ | <td colspan="12">$${ICIT + NADP^+ \rightarrow AKG + NADPH + CO_2}$$</td> | ||
+ | <td colspan="3">10.2</td> | ||
+ | <td colspan="3">0.102</td> | ||
+ | <td colspan="3">0.03</td> | ||
+ | <td colspan="3">0.3</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="1">C5</td> | ||
+ | <td colspan="12">$${AKG + NAD^+ \rightarrow AKG + NADPH + CO_2}$$</td> | ||
+ | <td colspan="3">57.344</td> | ||
+ | <td colspan="3">0.57344</td> | ||
+ | <td colspan="3">0.1</td> | ||
+ | <td colspan="3">1.0</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="1">C6</td> | ||
+ | <td colspan="12">$${SUCCoA + ADP \rightarrow SUCC + ATP}$$</td> | ||
+ | <td colspan="3">6.54</td> | ||
+ | <td colspan="3">0.0651</td> | ||
+ | <td colspan="3">0.015</td> | ||
+ | <td colspan="3">0.15</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="1">C7</td> | ||
+ | <td colspan="12">$${SUCC + FAD \rightarrow FUM + FADH_2}$$</td> | ||
+ | <td colspan="3">1.02</td> | ||
+ | <td colspan="3">1.02</td> | ||
+ | <td colspan="3">0.12</td> | ||
+ | <td colspan="3">0.15</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="1">C8</td> | ||
+ | <td colspan="12">$${FUM \rightarrow MAL}$$</td> | ||
+ | <td colspan="3">887.7</td> | ||
+ | <td colspan="3">87.7</td> | ||
+ | <td colspan="3">0.25</td> | ||
+ | <td colspan="3">2.38</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="1">C9</td> | ||
+ | <td colspan="12">$${MAL + NAD^+ \rightarrow OAA + NADH}$$</td> | ||
+ | <td colspan="3">184</td> | ||
+ | <td colspan="3">184</td> | ||
+ | <td colspan="3">0.833</td> | ||
+ | <td colspan="3">0.0443</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="1">C10</td> | ||
+ | <td colspan="12">$${OAA \rightarrow CIT}$$</td> | ||
+ | <td colspan="3">64.8</td> | ||
+ | <td colspan="3">0.648</td> | ||
+ | <td colspan="3">0.012</td> | ||
+ | <td colspan="3">0.12</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td rowspan="2" colspan="1">C11</td> | ||
+ | <td rowspan="2" colspan="12">$${PYR \rightarrow NADH + AcCoA + CO_2}$$</td> | ||
+ | <td colspan="6">Vmax (1/s)</td> | ||
+ | <td colspan="6">KM (mM)</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="6">0.00518</td> | ||
+ | <td colspan="6">1.5</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="1">C12</td> | ||
+ | <td colspan="12">$${ICIT \rightarrow GOX}$$</td> | ||
+ | <td colspan="3">1.172</td> | ||
+ | <td colspan="3">0.01172</td> | ||
+ | <td colspan="3">0.145</td> | ||
+ | <td colspan="3">0.13</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="1">C13</td> | ||
+ | <td colspan="12">$${GOX \rightarrow MAL}$$</td> | ||
+ | <td colspan="3">20</td> | ||
+ | <td colspan="3">0.2</td> | ||
+ | <td colspan="3">0.057</td> | ||
+ | <td colspan="3">1.0</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td rowspan="2" colspan="1">C14</td> | ||
+ | <td rowspan="2" colspan="12">$${ICIT \rightarrow SUCC + GOX}$$</td> | ||
+ | <td colspan="3">Vmf (mM/min)</td> | ||
+ | <td colspan="3">Vmr (mM/min)</td> | ||
+ | <td colspan="2">Kicit (mM)</td> | ||
+ | <td colspan="2">Ksucc (mM)</td> | ||
+ | <td colspan="2">Kgox (mM)</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td colspan="3">1.172</td> | ||
+ | <td colspan="3">0.012</td> | ||
+ | <td colspan="2">0.145</td> | ||
+ | <td colspan="2">0.59</td> | ||
+ | <td colspan="2">0.13</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | </div> | ||
+ | </div> | ||
+ | </div> | ||
− | <div | + | <div id="CO2_vs_xylose"> |
− | <h3> | + | <h3>CO<sub>2</sub> v.s. Xylose</h3> |
− | < | + | </div> |
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− | </ | + | |
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− | + | ||
− | </div> | + | |
+ | <div id="reference"> | ||
+ | <h3>Reference</h3> | ||
+ | </div> | ||
+ | </div> | ||
+ | </div> | ||
+ | </div> | ||
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+ | </div> | ||
+ | </div> | ||
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Revision as of 14:57, 20 September 2018