Difference between revisions of "Team:UI Indonesia/Safety"

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  <link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/4.7.0/css/font-awesome.min.css">
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</head>
  
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<h1> Safety </h1>
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<style>
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<p>Please visit the <a href="https://2018.igem.org/Safety">Safety Hub</a> to find this year's safety requirements & deadlines, and to learn about safe & responsible research in iGEM.</p>
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  body,h1,h2,h3,h4,h5,h6 {font-family: "Lato", sans-serif;}
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  body, html {
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      height: 100%;
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      line-height: 1.5;
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<p>On this page of your wiki, you should write about how you are addressing any safety issues in your project. The wiki is a place where you can <strong>go beyond the questions on the safety forms</strong>, and write about whatever safety topics are most interesting in your project. (You do not need to copy your safety forms onto this wiki page.)</p>
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  img {
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    display: block;
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    margin-left: auto;
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  .bgimg-1, .bgimg-2, .bgimg-3, .bgimg-4, .bgimg-5 {
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      background-attachment: fixed;
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      background-position: center;
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      background-repeat: no-repeat;
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      background-size: cover;
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  }
  
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<div class="column two_thirds_size">
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  .bgimg-1 {
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<h3>Safe Project Design</h3>
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      background-image: url("https://static.igem.org/mediawiki/2018/0/07/T--UI_Indonesia--bacteria.jpg");
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      min-height: 400px;
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  }
  
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<p>Does your project include any safety features? Have you made certain decisions about the design to reduce risks? Write about them here! For example:</p>
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  .bgimg-2 {
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      background-image: url("https://static.igem.org/mediawiki/2018/0/07/T--UI_Indonesia--bacteria.jpg");
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      min-height: 400px;
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  }
  
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<ul>
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  .bgimg-3 {
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<li>Choosing a non-pathogenic chassis</li>
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      background-image: url("https://static.igem.org/mediawiki/2018/0/07/T--UI_Indonesia--bacteria.jpg");
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<li>Choosing parts that will not harm humans / animals / plants</li>
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      min-height: 400px;
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<li>Substituting safer materials for dangerous materials in a proof-of-concept experiment</li>
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  }
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<li>Including an "induced lethality" or "kill-switch" device</li>
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</ul>
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</div>
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  .bgimg-4 {
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      background-image: url("https://static.igem.org/mediawiki/2018/0/07/T--UI_Indonesia--bacteria.jpg");
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      min-height: 400px;
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  }
  
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<div class="column third_size">
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  .bgimg-5 {
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<h3>Safe Lab Work</h3>
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      background-image: url("https://static.igem.org/mediawiki/2018/0/07/T--UI_Indonesia--bacteria.jpg");
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      min-height: 400px;
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  }
  
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<p>What safety procedures do you use every day in the lab? Did you perform any unusual experiments, or face any unusual safety issues? Write about them here!</p>
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  @media only screen and (max-device-width: 1024px) {
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      .bgimg-3, .bgimg-4, .bgimg-5 {
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          background-attachment: scroll;
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      }
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  .navbar {
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    background-color: #4CAF50;
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    position: fixed;
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    top: 10px ;
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    width: 100%;
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    z-index:50;
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  }
  
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<h3>Safe Shipment</h3>
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  .navbar a {
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    float: left;
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    color: white;
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    text-align: center;
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    padding-top: 20px;
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    padding-bottom: 10px;
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    padding-right: 10px;
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    padding-left: 10px;
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    text-decoration: none;
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    font-size: 16px;
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  }
  
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<p>Did you face any safety problems in sending your DNA parts to the Registry? How did you solve those problems?</p>
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  .dropdown {
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    float: left;
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    overflow: hidden;
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  .dropdown .dropbtn {
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    font-size: 8px;   
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    border: none;
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    outline: none;
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    color: #f9c89b;
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    padding: 15px 10px;
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    background-color: inherit;
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  }
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  .navbar a:hover, .dropdown:hover .dropbtn {
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    background-color: #8bc34a;
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  .dropdown-content {
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    display: none;
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    position: absolute;
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    background-color: #ddffdd;
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    min-width: 160px;
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    box-shadow: 0px 8px 16px 0px rgba(0,0,0,0.2);
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    z-index: 100;
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    top: 60px;
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    font-size: 8 px;
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  }
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  .dropdown-content a {
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    float: none;
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    color: black;
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    padding: 12px 18px;
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    text-decoration: none;
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    display: block;
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    text-align: left;
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  .dropdown-content a:hover {
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    background-color: #8bc34a;
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    display: block;
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    position: fixed;
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  .container {
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    position: relative;
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    display: block;
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    margin-left: auto;
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    margin-right: auto;
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  }
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  .image {
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    display: block;
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    width: 40%;
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    height: auto;
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    position: absolute;
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    top: 0;
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    bottom: 0;
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    width: 40%;
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    transition: .5s ease;
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    opacity: 0.8;
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    color: white;
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    font-size: 20px;
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    position: absolute;
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    top: 50%;
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    -webkit-transform: translate(-50%, -50%);
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    text-align: center;
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  }
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</style>
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<body>
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<!-- Navbar -->
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<div class="navbar">
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    <span class="w3-center w3-padding-large w3-black w3-xlarge w3-wide w3-animate-opacity">INTRODUCTION</span>
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  <div align="center"> <h4>Safety and security aspects</h4> </div>
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 +
  <br><br>
 +
 
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  In accordance to the iGEM safety rules, our team used a cellular
 +
  organism classified in the <i>Risk Group</i> 1. For the purpose of cloning and
 +
  expression, <i>Escherichia coli</i> K-12-strain derivates were primarily
 +
  applied in the lab as the main experimental subjects. Standard plasmids
 +
  with standard antibiotic resistance markers were designed to enhance
 +
  functions of recombinants selection. To ensure the safety of ourselves and
 +
  the project, we worked in a BSL-1 (<i>Biosafety type 1</i>) laboratory,
 +
  following standard safety protocols (e.g. masks, gloves, googles, and
 +
  protective clothing). The lab also includes the “clean-to-dirty” workflow
 +
  area, which means that lab staffs do not return to a “clean” area after
 +
  working in a “dirty” area. For instance, entering PCR room is forbidden
 +
  after working with DNA isolation or bacterial cultures in DNA room.
 +
 
 +
  <br><br>
 +
 
 +
  One of our project’s part which raised concern about biosecurity is the
 +
  synthetic hand-made <i>Affitoxin</i> (i.e. the binding domain of AB diphtheria
 +
  exotoxin) design. The details regarding this part would be discussed in
 +
  <b>this page</b> (<i>http://parts.igem.org/Part:BBa_K2607000)</i>. The fact
 +
  that this part originates from the modification of diphtheria toxin raises
 +
  concern about safety and security, including the possibilities of dual-use
 +
  research. Regarding safety issues, the main purpose of the creation of this
 +
  part is to eliminate the toxic domain of the exotoxin, leaving only the binding
 +
  domain to be used to test our chimeric HB-EGF/Tar receptor. However, this
 +
  condition still leaves a security issue regarding dual-use possibilities.
 +
  Additionally, the creation of this part, if successful, means that we have
 +
  only isolated the necessary domains needed for binding assays. The full
 +
  sequence could be used to construct another chimeric protein in which the
 +
  <i>Affitoxin</i> is linked to a more harmful toxin or material and used to
 +
  deliver that harmful part into the cytoplasm of human cells containing
 +
  HB-EGF surface receptor. To handle this, our team are required to comply
 +
  with rules of iGEM safety committee to be allowed to not publish the full
 +
  sequence in the iGEM UI 2018 Wiki pages.

Revision as of 12:09, 8 October 2018

Home
Project▾
Overview Our Project Results and Discussions
Parts
InterLab▾
Introduction Materials and Equipment Methods Results and Discussions Conclusions
Model
Human Practices▾
Campus Campaign Social Work Biosafety & Biosecurity Training Human Practice Catalogue
Improve▾
Introduction Methods Results and Discussions Conclusions
Team Collaborations
Attributions
INTRODUCTION

Safety and security aspects



In accordance to the iGEM safety rules, our team used a cellular organism classified in the Risk Group 1. For the purpose of cloning and expression, Escherichia coli K-12-strain derivates were primarily applied in the lab as the main experimental subjects. Standard plasmids with standard antibiotic resistance markers were designed to enhance functions of recombinants selection. To ensure the safety of ourselves and the project, we worked in a BSL-1 (Biosafety type 1) laboratory, following standard safety protocols (e.g. masks, gloves, googles, and protective clothing). The lab also includes the “clean-to-dirty” workflow area, which means that lab staffs do not return to a “clean” area after working in a “dirty” area. For instance, entering PCR room is forbidden after working with DNA isolation or bacterial cultures in DNA room.

One of our project’s part which raised concern about biosecurity is the synthetic hand-made Affitoxin (i.e. the binding domain of AB diphtheria exotoxin) design. The details regarding this part would be discussed in this page (http://parts.igem.org/Part:BBa_K2607000). The fact that this part originates from the modification of diphtheria toxin raises concern about safety and security, including the possibilities of dual-use research. Regarding safety issues, the main purpose of the creation of this part is to eliminate the toxic domain of the exotoxin, leaving only the binding domain to be used to test our chimeric HB-EGF/Tar receptor. However, this condition still leaves a security issue regarding dual-use possibilities. Additionally, the creation of this part, if successful, means that we have only isolated the necessary domains needed for binding assays. The full sequence could be used to construct another chimeric protein in which the Affitoxin is linked to a more harmful toxin or material and used to deliver that harmful part into the cytoplasm of human cells containing HB-EGF surface receptor. To handle this, our team are required to comply with rules of iGEM safety committee to be allowed to not publish the full sequence in the iGEM UI 2018 Wiki pages.