Difference between revisions of "Team:Calgary/InterLab"
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| − | <h3 class="infosubtitle">What is | + | <h3 class="infosubtitle">What is the InterLab Study?</h3> |
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| − | <p style="text-indent: 0px"> | + | <p style="text-indent: 0px">The InterLab study is an international collaborative lab study administered by the iGEM Measurement Committee and was established several years ago to help create reliable and repeatable measurements in synthetic biology. Ultimately, the goal is to develop a robust measurement procedure for green fluorescent protein (GFP), which is one of the most commonly used markers in synthetic biology. </p> |
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| − | <p style="text-indent: 0px"> | + | <p style="text-indent: 0px">This year, the purpose of the study was to investigate if the lab-to-lab variability of GFP fluorescence measurements could be reduced by normalizing to absolute cell counts or colony-forming units (CFUs).</p> |
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| − | + | <h3 class="infosubtitle">Methods</h3> | |
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| − | < | + | <p style="text-indent: 0px">The parts listed below are from the 2018 iGEM Distribution Kit and were transformed into chemically competent <i>E. coli</i> DH5-alpha cells and were used for all cell measurements.</p> |
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| − | <p style="text-indent: 0px"> | + | <h5 class="infosubtitle">Normalizing fluorescence measurements to absolute cell counts:</h5> |
| − | + | <p style="text-indent: 0px">E. coli cell concentrations were approximated by comparing the cell absorbance measurements to silica bead absorbance measurements. These silica beads are the same shape and size as an <i>E. coli</i> cell, therefore they scatter and absorb light in a similar way. Given that the bead concentrations were known, each cell absorbance measurement could be converted to a standard "equivalent concentration of beads".</p> | |
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| − | <p style="text-indent: 0px"> | + | <h5 class="infosubtitle">Normalizing to colony-forming units (CFUs):</h5> |
| − | + | <p style="text-indent: 0px">The number of CFUs grown after liquid media is poured onto a plate is an indication of the number of live cells that were in that media. Using this method with E. coli cells, a conversion factor from absorbance to CFU was computed. | |
| − | + | </p> | |
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| − | + | <p style="text-indent: 0px">The methods and protocols used for this study were distributed by the iGEM Measurement Committee and can be found <a href="https://2018.igem.org/Measurement/InterLab/Plate_Reader">here</a>.</p> | |
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| − | + | <h3 class="infosubtitle">Results</h3> | |
| − | + | <br> | |
| − | + | <h5 class="infosubtitle">Calibration</h5> | |
| − | </ | + | |
| + | <h5 class="infosubtitle">Cell Measurements</h5> | ||
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</div> | </div> | ||
</div> | </div> | ||
Revision as of 08:29, 15 October 2018
INTERLAB
What is the InterLab Study?
The InterLab study is an international collaborative lab study administered by the iGEM Measurement Committee and was established several years ago to help create reliable and repeatable measurements in synthetic biology. Ultimately, the goal is to develop a robust measurement procedure for green fluorescent protein (GFP), which is one of the most commonly used markers in synthetic biology.
This year, the purpose of the study was to investigate if the lab-to-lab variability of GFP fluorescence measurements could be reduced by normalizing to absolute cell counts or colony-forming units (CFUs).
Methods
The parts listed below are from the 2018 iGEM Distribution Kit and were transformed into chemically competent E. coli DH5-alpha cells and were used for all cell measurements.
Normalizing fluorescence measurements to absolute cell counts:
E. coli cell concentrations were approximated by comparing the cell absorbance measurements to silica bead absorbance measurements. These silica beads are the same shape and size as an E. coli cell, therefore they scatter and absorb light in a similar way. Given that the bead concentrations were known, each cell absorbance measurement could be converted to a standard "equivalent concentration of beads".
Normalizing to colony-forming units (CFUs):
The number of CFUs grown after liquid media is poured onto a plate is an indication of the number of live cells that were in that media. Using this method with E. coli cells, a conversion factor from absorbance to CFU was computed.
The methods and protocols used for this study were distributed by the iGEM Measurement Committee and can be found here.