Line 244: | Line 244: | ||
<h1>Vector construction of Lock and Information:</h1><br> | <h1>Vector construction of Lock and Information:</h1><br> | ||
− | 1 | + | 1. CYC promoter, CYC1 terminator were amplified from genomic DNA of <I>Saccharomyces cerevisiae</I> YPH499 with corresponding primers respectively. And the DNA of the lock and information fragment was synthesized by company with restriction enzyme cutting sites HindIII, EcoRI and EcoRI, NheI.<br> |
− | 2 Modified CYC1 promoter and CYC1 terminator by adding the HA1 or HA2 by using PCR.<br> | + | 2. Modified CYC1 promoter and CYC1 terminator by adding the HA1 or HA2 by using PCR.<br> |
− | 3 Four fragments of HA1-CYC promoter, Stem loop(the lock), Information and Cyc1 terminator-HA2 the were double-digested with SacI-HindIII, HindIII-EcoRI, EcoRI-NheI, and NheI-BamHI, respectively.<br> | + | 3. Four fragments of HA1-CYC promoter, Stem loop(the lock), Information and Cyc1 terminator-HA2 the were double-digested with SacI-HindIII, HindIII-EcoRI, EcoRI-NheI, and NheI-BamHI, respectively.<br> |
− | 4 Ligated them into an expression vector pesc-Ura by T4 ligase.<br> | + | 4. Ligated them into an expression vector pesc-Ura by T4 ligase.<br> |
− | 5 To detemine whether the vector is constructed successfully, conoly PCR and sequencing were done.<br><br> | + | 5. To detemine whether the vector is constructed successfully, conoly PCR and sequencing were done.<br><br> |
<h1>Vector construction of Lock and EGFP:</h1><br> | <h1>Vector construction of Lock and EGFP:</h1><br> | ||
− | 1 | + | 1. CYC promoter, CYC1 terminator were amplified from genomic DNA of <I>Saccharomyces cerevisiae</I> YPH499 with corresponding primers respectively. And the DNA of the lock was synthesized by company with restriction enzyme cutting sites HindIII, EcoRI . The EGFP gene was amplified from palsmid pEGFP-N2, and modified it by adding EcoRI and NheI respectively.<br> |
− | 2 Modified CYC1 promoter and CYC1 terminator by adding the HA1 or HA2 by using PCR.<br> | + | 2. Modified CYC1 promoter and CYC1 terminator by adding the HA1 or HA2 by using PCR.<br> |
− | 3 Four fragments of HA1-CYC promoter, Stem loop(the lock), EGFP and Cyc1 terminator-HA2 the were double-digested with SacI-HindIII, HindIII-EcoRI, EcoRI-NheI, and NheI-BamHI, respectively.<br> | + | 3. Four fragments of HA1-CYC promoter, Stem loop(the lock), EGFP and Cyc1 terminator-HA2 the were double-digested with SacI-HindIII, HindIII-EcoRI, EcoRI-NheI, and NheI-BamHI, respectively.<br> |
− | 4 Ligated them into an expression vector pesc-Ura by T4 ligase.<br> | + | 4. Ligated them into an expression vector pesc-Ura by T4 ligase.<br> |
− | 5 To detemine whether the vector is constructed successfully, conoly PCR and sequencing were done.<br><br> | + | 5. To detemine whether the vector is constructed successfully, conoly PCR and sequencing were done.<br><br> |
<h1>Vector construction of Lock and Gluc:</h1><br> | <h1>Vector construction of Lock and Gluc:</h1><br> | ||
− | 1 | + | 1. CYC promoter, CYC1 terminator were amplified from genomic DNA of <I>Saccharomyces cerevisiae</I> YPH499 with corresponding primers respectively. And the DNA of the lock was synthesized by company with restriction enzyme cutting sites HindIII, EcoRI . The Gluc gene was amplified from palsmid pGluc-Basic2, and modified it by adding EcoRI and NheI respectively.<br> |
− | 2 Modified CYC1 promoter and CYC1 terminator by adding the HA1 or HA2 by using PCR.<br> | + | 2. Modified CYC1 promoter and CYC1 terminator by adding the HA1 or HA2 by using PCR.<br> |
− | 3 Four fragments of HA1-CYC promoter, Stem loop(the lock), Gluc and Cyc1 terminator-HA2 the were double-digested with SacI-HindIII, HindIII-EcoRI, EcoRI-NheI, and NheI-BamHI, respectively.<br> | + | 3. Four fragments of HA1-CYC promoter, Stem loop(the lock), Gluc and Cyc1 terminator-HA2 the were double-digested with SacI-HindIII, HindIII-EcoRI, EcoRI-NheI, and NheI-BamHI, respectively.<br> |
− | 4 Ligated them into an expression vector pesc-Ura by T4 ligase.<br> | + | 4. Ligated them into an expression vector pesc-Ura by T4 ligase.<br> |
− | 5 To detemine whether the vector is constructed successfully, conoly PCR and sequencing were done.<br><br> | + | 5. To detemine whether the vector is constructed successfully, conoly PCR and sequencing were done.<br><br> |
<h1>Vector construction of Key:</h1><br> | <h1>Vector construction of Key:</h1><br> | ||
− | 1 | + | 1. RPR1 promoter was amplified from plasmid named |
pRPR1_gRNA_handle_RPR1t. <br> | pRPR1_gRNA_handle_RPR1t. <br> | ||
− | 2 | + | 2. Modified RPR1 promoter by adding the Key sequence and SpeI, XhoI by using PCR.<br> |
− | 3 | + | 3. The fragment of pRPR1-Key was double-digested with SpeI and XhoI respectively.<br> |
− | 4 Ligated it into an expression vector pRPR1_gRNA_handle_RPR1t by T4 ligase.<br> | + | 4. Ligated it into an expression vector pRPR1_gRNA_handle_RPR1t by T4 ligase.<br> |
− | 5 To detemine whether the vector is constructed successfully, conoly PCR and sequencing were done.<br><br> | + | 5. To detemine whether the vector is constructed successfully, conoly PCR and sequencing were done.<br><br> |
<h1>Vector construction of suicide switch:</h1><br> | <h1>Vector construction of suicide switch:</h1><br> | ||
− | 1 Bax(alpha) Gene was amplified from genomic DNA of 293T cell with corresponding primers respectively.<br> Fig2C promoter fragment was from iGEM parts registry.<br> | + | 1. Bax(alpha) Gene was amplified from genomic DNA of 293T cell with corresponding primers respectively.<br> Fig2C promoter fragment was from iGEM parts registry.<br> |
− | 2 Modified Bax fragment by adding SpeI and HindIII by using PCR.<br> | + | 2. Modified Bax fragment by adding SpeI and HindIII by using PCR.<br> |
− | 3 Two fragments of Fig2C promoter, Bax gene were double-digested with EcoRI-SpeI, and SpeI-HindIII, respectively.<br> | + | 3. Two fragments of Fig2C promoter, Bax gene were double-digested with EcoRI-SpeI, and SpeI-HindIII, respectively.<br> |
− | 4 Ligated the fragments into an expression vector pesc-Ura by T4 ligase.<br> | + | 4. Ligated the fragments into an expression vector pesc-Ura by T4 ligase.<br> |
− | 5 To detemine whether the vector is constructed successfully, conoly PCR and sequencing were done.<br><br> | + | 5. To detemine whether the vector is constructed successfully, conoly PCR and sequencing were done.<br><br> |
<h1>Vector construction of pFig2C-EGFP</h1><br> | <h1>Vector construction of pFig2C-EGFP</h1><br> | ||
− | 1 | + | 1. Fig2C promoter fragment was from iGEM parts registry. The EGFP gene was amplified from palsmid pEGFP-N2, and modified it by adding SpeI and HindIII respectively.<br> |
− | 2 Two fragments of Fig2C promoter, EGFP gene were double-digested with EcoRI-SpeI, and SpeI-HindIII, respectively.<br> | + | 2. Two fragments of Fig2C promoter, EGFP gene were double-digested with EcoRI-SpeI, and SpeI-HindIII, respectively.<br> |
− | 3 Ligated the fragments into an expression vector pesc-Ura by T4 ligase.<br> | + | 3. Ligated the fragments into an expression vector pesc-Ura by T4 ligase.<br> |
− | 4 To detemine whether the vector is constructed successfully, conoly PCR and sequencing were done.<br><br> | + | 4. To detemine whether the vector is constructed successfully, conoly PCR and sequencing were done.<br><br> |
</div> | </div> | ||
</div> | </div> | ||
Line 293: | Line 293: | ||
<h1>Qualitative verification using EGFP</h1><br> | <h1>Qualitative verification using EGFP</h1><br> | ||
− | 1.Transform expression plasmid pRPR1-Key and pCYC-Lock-EGFP<br> | + | 1. Transform expression plasmid pRPR1-Key and pCYC-Lock-EGFP<br> |
into YPH499. Plate on SD/-Leu-Ura selection plates and incubate at 30 ° C for 36 hours.<br> | into YPH499. Plate on SD/-Leu-Ura selection plates and incubate at 30 ° C for 36 hours.<br> | ||
− | 2.Resupend a single colony in 10ml SD/-Ura liquid medium <br> | + | 2. Resupend a single colony in 10ml SD/-Ura liquid medium <br> |
− | 3.Shake at 30 ° C to OD600 = 0.6<br> | + | 3. Shake at 30 ° C to OD600 = 0.6<br> |
− | 4.500 ul of the bacterial solution was taken out, a picture was prepared, and the expression of EGFP was observed with a fluorescence microscope.<br><br> | + | 4. 500 ul of the bacterial solution was taken out, a picture was prepared, and the expression of EGFP was observed with a fluorescence microscope.<br><br> |
<h1>Quantitative verification using Gluc</h1><br> | <h1>Quantitative verification using Gluc</h1><br> | ||
− | 1.Transform expression plasmid pRPR1-Key and pCYC-Lock-Gluc<br> | + | 1. Transform expression plasmid pRPR1-Key and pCYC-Lock-Gluc<br> |
into YPH499. Plate on SD/-Leu-Ura selection plates and incubate at 30 ° C for 36 hours.<br> | into YPH499. Plate on SD/-Leu-Ura selection plates and incubate at 30 ° C for 36 hours.<br> | ||
− | 2.Resupend a single colony in 10ml SD/-Ura liquid medium<br> | + | 2. Resupend a single colony in 10ml SD/-Ura liquid medium<br> |
− | 3.Shake at 30 ° C to OD600 = 0.6<br> | + | 3. Shake at 30 ° C to OD600 = 0.6<br> |
− | 4.500 ul of bacterial solution was taken for ultrasonic cell disruption, and luciferase substrate | + | 4. 500 ul of bacterial solution was taken for ultrasonic cell disruption, and luciferase substrate Coelenterazine was added to detect the expression of luciferase Gluc.<br><br> |
</div> | </div> | ||
</div> | </div> | ||
Line 317: | Line 317: | ||
<h1>Qualitative verification</h1><br> | <h1>Qualitative verification</h1><br> | ||
− | 1.Transform expression plasmid pFig2C-EGFP into YPH499. Plate on SD/-Leu-Ura selection plates and incubate at 30 ° C for 36 hours.<br> | + | 1. Transform expression plasmid pFig2C-EGFP into YPH499. Plate on SD/-Leu-Ura selection plates and incubate at 30 ° C for 36 hours.<br> |
− | 2.Resupend a single colony in 10ml SD/-Ura liquid medium <br> | + | 2. Resupend a single colony in 10ml SD/-Ura liquid medium <br> |
− | 3.Shake at 30 ° C to OD600 = 0.6<br> | + | 3. Shake at 30 ° C to OD600 = 0.6<br> |
− | 4. | + | 4. 500ul of the bacterial solution was taken out, a picture was prepared, and the expression of EGFP was observed with a fluorescence microscope.<br><br> |
<h1>Quantitative verification by q-PCR</h1><br> | <h1>Quantitative verification by q-PCR</h1><br> | ||
− | 1.Transform expression plasmid pFig2C-EGFP into YPH499. Plate on SD/-Leu-Ura selection plates and incubate at 30 ° C for 36 hours.<br> | + | 1. Transform expression plasmid pFig2C-EGFP into YPH499. Plate on SD/-Leu-Ura selection plates and incubate at 30 ° C for 36 hours.<br> |
− | 2.Resupend a single colony in 10ml SD/-Ura liquid medium <br> | + | 2. Resupend a single colony in 10ml SD/-Ura liquid medium <br> |
− | 3.Shake at 30 ° C to OD600 = 0.6<br> | + | 3. Shake at 30 ° C to OD600 = 0.6<br> |
− | 4.Take 1ml of bacterial solution to extract RNA, perform reverse transcription.<br> | + | 4. Take 1ml of bacterial solution to extract RNA, perform reverse transcription.<br> |
− | 5.Perform quantitative PCR using reverse transcription products as templates.<br><br> | + | 5. Perform quantitative PCR using reverse transcription products as templates.<br><br> |
</div> | </div> | ||
</div> | </div> | ||
Line 340: | Line 340: | ||
<h1>Qualitative verification using EGFP</h1><br> | <h1>Qualitative verification using EGFP</h1><br> | ||
− | 1.The constructed plasmid pCYC-Lock-EGFP was subjected to PCR to obtain a HA1-pCYC-Lock-EGFP-tCYC-HA2 fragment. 10 ul of PCR product was taken, purified and transformed. Plate on SD/-Leu-Ura selection plates and incubate at 30 ° C for 36 hours.<br> | + | 1. The constructed plasmid pCYC-Lock-EGFP was subjected to PCR to obtain a HA1-pCYC-Lock-EGFP-tCYC-HA2 fragment. 10 ul of PCR product was taken, purified and transformed. Plate on SD/-Leu-Ura selection plates and incubate at 30 ° C for 36 hours.<br> |
− | 2.Resupend a single colony in 10ml SD/-Ura liquid medium <br> | + | 2. Resupend a single colony in 10ml SD/-Ura liquid medium <br> |
− | 3.Shake at 30 ° C to OD600 = 0.6<br> | + | 3. Shake at 30 ° C to OD600 = 0.6<br> |
− | 4.500 ul of the bacterial solution was taken out, a picture was prepared, and the expression of EGFP was observed with a fluorescence microscope.<br><br> | + | 4. 500 ul of the bacterial solution was taken out, a picture was prepared, and the expression of EGFP was observed with a fluorescence microscope.<br><br> |
<h1>PCR verification</h1><br> | <h1>PCR verification</h1><br> | ||
− | 1.The constructed plasmid pCYC-Lock-EGFP was subjected to PCR to obtain a HA1-pCYC-Lock-EGFP-tCYC-HA2 fragment. 10 ul of PCR product was taken, purified and transformed. Plate on SD/-Leu-Ura selection plates and incubate at 30 ° C for 36 hours.<br> | + | 1. The constructed plasmid pCYC-Lock-EGFP was subjected to PCR to obtain a HA1-pCYC-Lock-EGFP-tCYC-HA2 fragment. 10 ul of PCR product was taken, purified and transformed. Plate on SD/-Leu-Ura selection plates and incubate at 30 ° C for 36 hours.<br> |
− | 2.Resupend a single colony in 10ml SD/-Ura liquid medium <br> | + | 2. Resupend a single colony in 10ml SD/-Ura liquid medium <br> |
− | 3.Shake at 30 ° C to OD600 = 0.6<br> | + | 3. Shake at 30 ° C to OD600 = 0.6<br> |
− | 4.1 ml of the bacterial solution was taken for DNA extraction.<br> | + | 4. 1 ml of the bacterial solution was taken for DNA extraction.<br> |
− | 5.The obtained genomic DNA was subjected to PCR using a specific primer to verify whether the homologous recombination was successful.<br><br> | + | 5. The obtained genomic DNA was subjected to PCR using a specific primer to verify whether the homologous recombination was successful.<br><br> |
</div> | </div> | ||
Line 362: | Line 362: | ||
<div class="widget"> | <div class="widget"> | ||
<div class="widget-content"> | <div class="widget-content"> | ||
− | 1.The constructed plasmid pCYC-Lock-EGFP was subjected to PCR to obtain a HA1-pCYC-Lock-EGFP-tCYC-HA2 fragment. 10 ul of PCR product was taken, purified and transformed. Plate on SD/-Leu-Ura selection plates and incubate at 30 ° C for 36 hours.<br> | + | 1. The constructed plasmid pCYC-Lock-EGFP was subjected to PCR to obtain a HA1-pCYC-Lock-EGFP-tCYC-HA2 fragment. 10 ul of PCR product was taken, purified and transformed. Plate on SD/-Leu-Ura selection plates and incubate at 30 ° C for 36 hours.<br> |
− | 2.Resupend a single colony in 10ml SD/-Ura liquid medium <br> | + | 2. Resupend a single colony in 10ml SD/-Ura liquid medium <br> |
− | 3.Shake at 30 ° C to OD600 = 0.6<br> | + | 3. Shake at 30 ° C to OD600 = 0.6<br> |
− | 4.1 ml of the bacterial solution was taken for DNA extraction.<br> | + | 4. 1 ml of the bacterial solution was taken for DNA extraction.<br> |
− | 5.The obtained genomic DNA was subjected to PCR using a specific primer to verify whether the homologous recombination was successful.<br> | + | 5. The obtained genomic DNA was subjected to PCR using a specific primer to verify whether the homologous recombination was successful.<br> |
− | 6.Take 1ml of bacterial solution to extract RNA, perform reverse transcription to obtain the cDNA.<br> | + | 6. Take 1ml of bacterial solution to extract RNA, perform reverse transcription to obtain the cDNA.<br> |
− | 7.The cDNA was subjected to PCR using specific primers, and the product was purified and submitted to the company for sequencing.<br> | + | 7. The cDNA was subjected to PCR using specific primers, and the product was purified and submitted to the company for sequencing.<br> |
</div> | </div> |
Revision as of 11:47, 17 October 2018