Line 237: | Line 237: | ||
<ol> | <ol> | ||
<li> | <li> | ||
− | Transformation culture conditions: incubator of 30℃, plates with SD/-Ura-agar solid medium. | + | Transformation culture conditions: incubator of 30℃, plates with SD/-Ura-agar solid medium.<br> |
</li> | </li> | ||
<li> | <li> | ||
+ | Inoculation culture conditions: a 30℃ constant temperature shaker with 220 rpm in SD/-Ura liquid medium.<br> | ||
</li> | </li> | ||
− | + | ||
</ol> | </ol> | ||
<h1>pFig2c-Bax: <I>Saccharomyces cerevisiae</I> YPH499</h1><br> | <h1>pFig2c-Bax: <I>Saccharomyces cerevisiae</I> YPH499</h1><br> | ||
− | + | <ol> | |
− | + | <li> | |
− | + | Transformation culture conditions: incubator of 30℃, plates with SD/-Ura-agar solid medium.<br> | |
− | + | </li> | |
+ | <li> | ||
+ | Inoculation culture conditions: a 30℃ constant temperature shaker with 220 rpm in SD/-Ura liquid medium.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Inducible expression conditions: a 30℃ constant temperation shaker with 220 rpm in SD/-Ura liquid medium.<br> | ||
+ | contaning different concentrations of alpha factor.<br> | ||
+ | </li> | ||
+ | </ol> | ||
</div> | </div> | ||
</div> | </div> | ||
Line 261: | Line 270: | ||
<h1>Vector construction of Lock and Information:</h1><br> | <h1>Vector construction of Lock and Information:</h1><br> | ||
− | + | <ol> | |
− | + | <li> | |
− | + | CYC promoter, CYC1 terminator were amplified from genomic DNA of <I>Saccharomyces cerevisiae</I> YPH499 with corresponding primers respectively. And the DNA of the lock and information fragment was synthesized by company with restriction enzyme cutting sites HindIII, EcoRI and EcoRI, NheI. | |
− | + | </li> | |
− | + | <li> | |
+ | Modified CYC1 promoter and CYC1 terminator by adding the HA1 or HA2 by using PCR.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Four fragments of HA1-CYC promoter, Stem loop (the lock), Information and Cyc1 terminator-HA2 the were double-digested with SacI-HindIII, HindIII-EcoRI, EcoRI-NheI, and NheI-BamHI, respectively.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Ligated them into an expression vector pesc-Ura by T4 ligase.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | To detemine whether the vector is constructed successfully, conoly PCR and sequencing were done.<br> | ||
+ | </li> | ||
+ | </ol> | ||
+ | |||
+ | <br> | ||
+ | |||
<h1>Vector construction of Lock and EGFP:</h1><br> | <h1>Vector construction of Lock and EGFP:</h1><br> | ||
− | + | <ol> | |
− | + | <li> | |
− | + | CYC promoter, CYC1 terminator were amplified from genomic DNA of <I>Saccharomyces cerevisiae</I> YPH499 with corresponding primers respectively. And the DNA of the lock was synthesized by company with restriction enzyme cutting sites HindIII, EcoRI. The EGFP gene was amplified from palsmid pEGFP-N2, and modified it by adding EcoRI and NheI respectively.<br> | |
− | + | </li> | |
− | + | <li> | |
+ | Modified CYC1 promoter and CYC1 terminator by adding the HA1 or HA2 by using PCR.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Four fragments of HA1-CYC promoter, Stem loop (the lock), EGFP and Cyc1 terminator-HA2 the were double-digested with SacI-HindIII, HindIII-EcoRI, EcoRI-NheI, and NheI-BamHI, respectively.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Ligated them into an expression vector pesc-Ura by T4 ligase.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | To detemine whether the vector is constructed successfully, conoly PCR and sequencing were done.<br> | ||
+ | </li> | ||
+ | </ol> | ||
+ | |||
+ | <br> | ||
+ | |||
<h1>Vector construction of Lock and Gluc:</h1><br> | <h1>Vector construction of Lock and Gluc:</h1><br> | ||
− | + | <ol> | |
− | + | <li> | |
− | + | CYC promoter, CYC1 terminator were amplified from genomic DNA of <I>Saccharomyces cerevisiae</I> YPH499 with corresponding primers respectively. And the DNA of the lock was synthesized by company with restriction enzyme cutting sites HindIII, EcoRI. The Gluc gene was amplified from palsmid pGluc-Basic2, and modified it by adding EcoRI and NheI respectively.<br> | |
− | + | </li> | |
− | + | <li> | |
+ | Modified CYC1 promoter and CYC1 terminator by adding the HA1 or HA2 by using PCR.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Four fragments of HA1-CYC promoter, Stem loop (the lock), Gluc and Cyc1 terminator-HA2 the were double-digested with SacI-HindIII, HindIII-EcoRI, EcoRI-NheI, and NheI-BamHI, respectively.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Ligated them into an expression vector pesc-Ura by T4 ligase.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | To detemine whether the vector is constructed successfully, conoly PCR and sequencing were done.<br> | ||
+ | </li> | ||
+ | </ol> | ||
+ | |||
+ | <br> | ||
+ | |||
<h1>Vector construction of Key:</h1><br> | <h1>Vector construction of Key:</h1><br> | ||
− | + | <ol> | |
+ | <li> | ||
+ | RPR1 promoter was amplified from plasmid named | ||
pRPR1_gRNA_handle_RPR1t. <br> | pRPR1_gRNA_handle_RPR1t. <br> | ||
− | + | </li> | |
− | + | <li> | |
− | + | Modified RPR1 promoter by adding the Key sequence and SpeI, XhoI by using PCR.<br> | |
− | + | </li> | |
+ | <li> | ||
+ | The fragment of pRPR1-Key was double-digested with SpeI and XhoI respectively.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Ligated it into an expression vector pRPR1_gRNA_handle_RPR1t by T4 ligase.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | To detemine whether the vector is constructed successfully, conoly PCR and sequencing were done.<br> | ||
+ | </li> | ||
+ | </ol> | ||
+ | |||
+ | <br> | ||
<h1>Vector construction of suicide switch:</h1><br> | <h1>Vector construction of suicide switch:</h1><br> | ||
− | + | <ol> | |
− | + | <li> | |
− | + | Bax (alpha) Gene was amplified from genomic DNA of 293T cell with corresponding primers respectively.<br> Fig2C promoter fragment was from iGEM parts registry.<br> | |
− | + | </li> | |
− | + | <li> | |
+ | Modified Bax fragment by adding SpeI and HindIII by using PCR.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Two fragments of Fig2C promoter, Bax gene were double-digested with EcoRI-SpeI, and SpeI-HindIII, respectively.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Ligated the fragments into an expression vector pesc-Ura by T4 ligase.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | To detemine whether the vector is constructed successfully, conoly PCR and sequencing were done.<br> | ||
+ | </li> | ||
+ | </ol> | ||
+ | |||
+ | <br> | ||
<h1>Vector construction of pFig2C-EGFP</h1><br> | <h1>Vector construction of pFig2C-EGFP</h1><br> | ||
− | + | <ol> | |
− | + | <li> | |
− | + | Fig2C promoter fragment was from iGEM parts registry. The EGFP gene was amplified from palsmid pEGFP-N2, and modified it by adding SpeI and HindIII respectively.<br> | |
− | + | </li> | |
+ | <li> | ||
+ | Two fragments of Fig2C promoter, EGFP gene were double-digested with EcoRI-SpeI, and SpeI-HindIII, respectively.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Ligated the fragments into an expression vector pesc-Ura by T4 ligase.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | To detemine whether the vector is constructed successfully, conoly PCR and sequencing were done.<br> | ||
+ | </li> | ||
+ | </ol> | ||
+ | |||
+ | <br> | ||
</div> | </div> | ||
</div> | </div> | ||
Line 310: | Line 404: | ||
<h1>Qualitative verification using EGFP</h1><br> | <h1>Qualitative verification using EGFP</h1><br> | ||
− | + | <ol> | |
+ | <li> | ||
+ | Transform expression plasmid pRPR1-Key and pCYC-Lock-EGFP<br> | ||
into YPH499. Plate on SD/-Leu-Ura selection plates and incubate at 30℃ for 36 hours.<br> | into YPH499. Plate on SD/-Leu-Ura selection plates and incubate at 30℃ for 36 hours.<br> | ||
− | + | </li> | |
− | + | <li> | |
− | + | Resupend a single colony in 10ml SD/-Ura liquid medium <br> | |
− | + | </li> | |
+ | <li> | ||
+ | Shake at 30℃ to OD600nm = 0.6<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | 500ul of the bacterial solution was taken out, a picture was prepared, and the expression of EGFP was observed with a fluorescence microscope.<br> | ||
+ | </li> | ||
+ | </ol> | ||
+ | |||
+ | <br> | ||
+ | |||
<h1>Quantitative verification using Gluc</h1><br> | <h1>Quantitative verification using Gluc</h1><br> | ||
− | + | <ol> | |
− | + | <li> | |
− | + | Transform expression plasmid pRPR1-Key and pCYC-Lock-Gluc | |
− | + | into YPH499. Plate on SD/-Leu-Ura selection plates and incubate at 30℃ for 36 hours.<br> | |
− | + | </li> | |
+ | <li> | ||
+ | Resupend a single colony in 10ml SD/-Ura liquid medium<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Shake at 30℃ to OD600nm = 0.6<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | 500ul of bacterial solution was taken for ultrasonic cell disruption, and luciferase substrate Coelenterazine was added to detect the expression of luciferase Gluc.<br> | ||
+ | </li> | ||
+ | </ol> | ||
+ | <br> | ||
</div> | </div> | ||
</div> | </div> | ||
Line 333: | Line 450: | ||
<h1>Qualitative verification</h1><br> | <h1>Qualitative verification</h1><br> | ||
− | + | <ol> | |
− | + | <li> | |
− | + | Transform expression plasmid pFig2C-EGFP into YPH499. Plate on SD/-Leu-Ura selection plates and incubate at 30℃ for 36 hours.<br> | |
− | + | </li> | |
− | + | <li> | |
+ | Resupend a single colony in 10ml SD/-Ura liquid medium <br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Shake at 30℃ to OD600nm = 0.6<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | 500ul of the bacterial solution was taken out, a picture was prepared, and the expression of EGFP was observed with a fluorescence microscope.<br> | ||
+ | </li> | ||
+ | </ol> | ||
+ | <br> | ||
<h1>Quantitative verification by q-PCR</h1><br> | <h1>Quantitative verification by q-PCR</h1><br> | ||
− | + | <ol> | |
− | + | <li> | |
− | + | Transform expression plasmid pFig2C-EGFP into YPH499. Plate on SD/-Leu-Ura selection plates and incubate at 30℃ for 36 hours.<br> | |
− | + | </li> | |
− | + | <li> | |
− | + | Resupend a single colony in 10ml SD/-Ura liquid medium <br> | |
+ | </li> | ||
+ | <li> | ||
+ | Shake at 30℃ to OD600nm = 0.6<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Take 1ml of bacterial solution to extract RNA, perform reverse transcription.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Perform quantitative PCR using reverse transcription products as templates.<br> | ||
+ | </li> | ||
+ | </ol> | ||
+ | |||
+ | <br> | ||
</div> | </div> | ||
</div> | </div> | ||
Line 357: | Line 497: | ||
<h1>Qualitative verification using EGFP</h1><br> | <h1>Qualitative verification using EGFP</h1><br> | ||
− | + | <ol> | |
− | + | <li> | |
− | + | The constructed plasmid pCYC-Lock-EGFP was subjected to PCR to obtain a HA1-pCYC-Lock-EGFP-tCYC-HA2 fragment. 10ul of PCR product was taken, purified and transformed. Plate on SD/-Leu-Ura selection plates and incubate at 30℃ for 36 hours.<br> | |
− | + | </li> | |
+ | <li> | ||
+ | Resupend a single colony in 10ml SD/-Ura liquid medium <br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Shake at 30℃ to OD600nm = 0.6<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | 500ul of the bacterial solution was taken out, a picture was prepared, and the expression of EGFP was observed with a fluorescence microscope.<br> | ||
+ | </li> | ||
+ | </ol> | ||
+ | <br> | ||
<h1>PCR verification</h1><br> | <h1>PCR verification</h1><br> | ||
− | + | <ol> | |
− | + | <li> | |
− | + | The constructed plasmid pCYC-Lock-EGFP was subjected to PCR to obtain a HA1-pCYC-Lock-EGFP-tCYC-HA2 fragment. 10ul of PCR product was taken, purified and transformed. Plate on SD/-Leu-Ura selection plates and incubate at 30℃ for 36 hours.<br> | |
− | + | </li> | |
− | + | <li> | |
− | + | Resupend a single colony in 10ml SD/-Ura liquid medium <br> | |
+ | </li> | ||
+ | <li> | ||
+ | Shake at 30℃ to OD600nm = 0.6<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | 1 ml of the bacterial solution was taken for DNA extraction.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | </li> | ||
+ | The obtained genomic DNA was subjected to PCR using a specific primer to verify whether the homologous recombination was successful.<br> | ||
+ | </ol> | ||
+ | <br> | ||
</div> | </div> | ||
Line 378: | Line 541: | ||
</h1> | </h1> | ||
<div class="widget"> | <div class="widget"> | ||
− | <div class="widget-content"> | + | <div class="widget-content"> |
− | + | <ol> | |
− | + | <li> | |
− | + | The constructed plasmid pCYC-Lock-EGFP was subjected to PCR to obtain a HA1-pCYC-Lock-EGFP-tCYC-HA2 fragment. 10ul of PCR product was taken, purified and transformed. Plate on SD/-Leu-Ura selection plates and incubate at 30℃ for 36 hours.<br> | |
− | + | </li> | |
− | + | <li> | |
− | + | Resupend a single colony in 10ml SD/-Ura liquid medium <br> | |
− | + | </li> | |
+ | <li> | ||
+ | Shake at 30℃ to OD600nm = 0.6<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | 1 ml of the bacterial solution was taken for DNA extraction.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | The obtained genomic DNA was subjected to PCR using a specific primer to verify whether the homologous recombination was successful.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Take 1ml of bacterial solution to extract RNA, perform reverse transcription to obtain the cDNA.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | The cDNA was subjected to PCR using specific primers, and the product was purified and submitted to the company for sequencing.<br> | ||
+ | </li> | ||
+ | </ol> | ||
+ | <br> | ||
</div> | </div> |
Revision as of 20:09, 17 October 2018