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<html lang="en"> | <html lang="en"> | ||
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− | <meta charset="utf-8"> | + | <meta charset="utf-8" /> |
− | <title> | + | <title>Notebook-2018</title> |
+ | <meta name="viewport" content="width=device-width, initial-scale=1.0, maximum-scale=1.0, user-scalable=no" /> | ||
+ | |||
<link href="https://2018.igem.org/wiki/index.php?title=Template:NEFU_China/CSS-menu&action=raw&ctype=text/css" rel="stylesheet" type="text/css"> | <link href="https://2018.igem.org/wiki/index.php?title=Template:NEFU_China/CSS-menu&action=raw&ctype=text/css" rel="stylesheet" type="text/css"> | ||
+ | |||
+ | <link href="https://2018.igem.org/wiki/index.php?title=Template:NEFU_China/CSS-bootstrap-min&action=raw&ctype=text/css" rel="stylesheet" type="text/css"> | ||
+ | <link href="https://2018.igem.org/wiki/index.php?title=Template:NEFU_China/CSS-bootstrap-responsive-min&action=raw&ctype=text/css" rel="stylesheet" type="text/css"> | ||
+ | <link href="https://2018.igem.org/wiki/index.php?title=Template:NEFU_China/CSS-notebook-2018-05&action=raw&ctype=text/css" rel="stylesheet" type="text/css"> | ||
<style> | <style> | ||
− | + | .widget ol { | |
+ | margin-left: 30px!important; | ||
+ | } | ||
+ | .widget-content { | ||
+ | font-size: 26px!important; | ||
+ | } | ||
#top_title, #sideMenu{ | #top_title, #sideMenu{ | ||
display: none; | display: none; | ||
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margin-left: 0px; | margin-left: 0px; | ||
} | } | ||
− | + | #foot-title h3 { | |
+ | font-size:18px!important; | ||
+ | } | ||
+ | #menu li ul li:hover ul{ | ||
+ | background:rgba(0,0,0,0.75)!important; | ||
+ | } | ||
+ | li#mainlevel_01 a { | ||
+ | color: #FFE5B5!important; | ||
+ | |||
+ | } | ||
+ | li#mainlevel_01 a:hover { | ||
+ | font-size:30px!important; | ||
+ | text-shadow:0px 0px 8px #FFE5B5, | ||
+ | 0px 0px 42px #FFE5B5, | ||
+ | 0px 0px 72px #FFE5B5, | ||
+ | 0px 0px 150px #FFE5B5; | ||
+ | } | ||
+ | li#mainlevel_02 a { | ||
+ | color: #FFE5B5!important; | ||
+ | } | ||
+ | li#mainlevel_02 a:hover { | ||
+ | font-size:30px!important; | ||
+ | text-shadow:0px 0px 8px #FFE5B5, | ||
+ | 0px 0px 42px #FFE5B5, | ||
+ | 0px 0px 72px #FFE5B5, | ||
+ | 0px 0px 150px #FFE5B5; | ||
+ | } | ||
+ | li#mainlevel_03 a { | ||
+ | color: #FFE5B5!important; | ||
+ | } | ||
+ | li#mainlevel_03 a:hover { | ||
+ | font-size:30px!important; | ||
+ | text-shadow:0px 0px 8px #FFE5B5, | ||
+ | 0px 0px 42px #FFE5B5, | ||
+ | 0px 0px 72px #FFE5B5, | ||
+ | 0px 0px 150px #FFE5B5; | ||
+ | } | ||
+ | li#mainlevel_05 a { | ||
+ | color: #FFE5B5!important; | ||
+ | } | ||
+ | li#mainlevel_05 a:hover { | ||
+ | font-size:30px!important; | ||
+ | text-shadow:0px 0px 8px #FFE5B5, | ||
+ | 0px 0px 42px #FFE5B5, | ||
+ | 0px 0px 72px #FFE5B5, | ||
+ | 0px 0px 150px #FFE5B5; | ||
+ | } | ||
+ | li#mainlevel_06 a { | ||
+ | color: #FFE5B5!important; | ||
+ | } | ||
+ | li#mainlevel_06 a:hover { | ||
+ | font-size:30px!important; | ||
+ | text-shadow:0px 0px 8px #FFE5B5, | ||
+ | 0px 0px 42px #FFE5B5, | ||
+ | 0px 0px 72px #FFE5B5, | ||
+ | 0px 0px 150px #FFE5B5; | ||
+ | } | ||
+ | li#mainlevel_07 a { | ||
+ | color: #FFE5B5!important; | ||
+ | } | ||
+ | li#mainlevel_07 a:hover { | ||
+ | font-size:30px!important; | ||
+ | text-shadow:0px 0px 8px #FFE5B5, | ||
+ | 0px 0px 42px #FFE5B5, | ||
+ | 0px 0px 72px #FFE5B5, | ||
+ | 0px 0px 150px #FFE5B5; | ||
+ | } | ||
+ | li#mainlevel_08 a { | ||
+ | color: #FFE5B5!important; | ||
+ | } | ||
+ | li#mainlevel_08 a:hover { | ||
+ | font-size:30px!important; | ||
+ | text-shadow:0px 0px 8px #FFE5B5, | ||
+ | 0px 0px 42px #FFE5B5, | ||
+ | 0px 0px 72px #FFE5B5, | ||
+ | 0px 0px 150px #FFE5B5; | ||
+ | } | ||
+ | #menu li ul li ul li a:hover { | ||
+ | color: rgba(0,223,252,1); | ||
+ | border-top: dotted 1px rgba(255,255,255,0.91); | ||
+ | border-bottom: dotted 1px rgba(255,255,255,0.91); | ||
+ | background: rgba(0,223,252,.02); | ||
+ | } | ||
+ | #nav .mainlevel a { | ||
+ | color: black; | ||
+ | text-decoration:none; | ||
+ | line-height:32px; | ||
+ | display:block; | ||
+ | padding:0 5px; | ||
+ | font-size: 25px!important; | ||
+ | font-family: 'Segoe UI', Roboto, 'Helvetica Neue', Arial, sans-serif, 'Apple Color Emoji', 'Segoe UI Emoji', 'Segoe UI Symbol', 'Noto Color Emoji' !important; | ||
+ | } | ||
+ | .layer-bottom { | ||
+ | z-index: -2; | ||
+ | position: absolute; | ||
+ | margin-top: 0px!important; | ||
+ | } | ||
+ | #foot-title h3{ | ||
+ | font-size: 18px!important; | ||
+ | } | ||
+ | .widget li { | ||
+ | line-height:30px; | ||
+ | } | ||
</style> | </style> | ||
</head> | </head> | ||
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<body> | <body> | ||
<!--menu--> | <!--menu--> | ||
− | <div id="menu"> | + | |
− | <li id="nav">           | + | <div id="menu" style="background-color:rgba(0,0,0,0.6)!important"> |
− | + | <li id="nav" style="left: 8%!important; width: 100%!important;">           | |
+ | |||
<ul class="firstmenu" style="float: left"> | <ul class="firstmenu" style="float: left"> | ||
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<ul id="sub_02"> | <ul id="sub_02"> | ||
<li><a href="https://2018.igem.org/Team:NEFU_China/Background" target="_self">BACKGROUND</a></li> | <li><a href="https://2018.igem.org/Team:NEFU_China/Background" target="_self">BACKGROUND</a></li> | ||
− | <li><a href="https://2018.igem.org/Team:NEFU_China/Description" target="_self">DESCRIPTION | + | <li><a href="https://2018.igem.org/Team:NEFU_China/Description" target="_self">DESCRIPTION & DESIGN</a></li> |
− | + | <li><a href="https://2018.igem.org/Team:NEFU_China/Coding book" target="_self">CODE BOOK</a></li> | |
− | <li><a href="https://2018.igem.org/Team:NEFU_China/Coding book" target="_self"> | + | |
</ul> | </ul> | ||
</li> | </li> | ||
− | + | <li class="mainlevel" id="mainlevel_03"> | |
− | <a href="https://2018.igem.org/Team:NEFU_China/ | + | <a href="https://2018.igem.org/Team:NEFU_China/Demonstrate"><img id="parts" src="https://static.igem.org/mediawiki/2018/6/62/T--NEFU_China--_RESULTS.png">EXPERIMENTS</a> |
<ul id="sub_03"> | <ul id="sub_03"> | ||
− | <li><a href="https://2018.igem.org/Team:NEFU_China/ | + | <li><a href="https://2018.igem.org/Team:NEFU_China/Lock_Key" target="_self">LOCK & KEY</a></li> |
− | <li><a href="https://2018.igem.org/Team:NEFU_China/ | + | <li><a href="https://2018.igem.org/Team:NEFU_China/Suicide" target="_self">INFORMATION DESTRUCTION</a></li> |
+ | <li><a href="https://2018.igem.org/Team:NEFU_China/Splicing" target="_self">Pre-RNA SPLICING</a></li> | ||
+ | <li><a href="https://2018.igem.org/Team:NEFU_China/Demonstrate" target="_self">DEMONSTRATE</a></li> | ||
+ | <hr> | ||
+ | <li><a href="https://2018.igem.org/Team:NEFU_China/Basic_Part" target="_self">BASIC PARTS</a></li> | ||
+ | <li><a href="https://2018.igem.org/Team:NEFU_China/Composite_Part" target="_self">COMPOSITE PARTS</a></li> | ||
<li><a href="https://2018.igem.org/Team:NEFU_China/Improve" target="_self">IMPROVEMENT PARTS</a></li> | <li><a href="https://2018.igem.org/Team:NEFU_China/Improve" target="_self">IMPROVEMENT PARTS</a></li> | ||
− | <li><a href="https://2018.igem.org/Team:NEFU_China/ | + | <li><a href="https://2018.igem.org/Team:NEFU_China/Part_Collection" target="_self">PARTS COLLECTION</a></li> |
− | + | <hr> | |
− | + | <li><a href="https://2018.igem.org/Team:NEFU_China/Notebook" target="_self">NOTEBOOK</a></li> | |
− | + | <li><a href="https://2018.igem.org/Team:NEFU_China/Protocol" target="_self">PROTOCOL</a></li> | |
− | + | ||
− | + | ||
− | < | + | |
− | <li><a href="https://2018.igem.org/Team:NEFU_China/ | + | |
− | <li><a href="https://2018.igem.org/Team:NEFU_China/ | + | |
</ul> | </ul> | ||
</li> | </li> | ||
+ | |||
<li class="mainlevel" id="mainlevel_05"> | <li class="mainlevel" id="mainlevel_05"> | ||
<a href="https://2018.igem.org/Team:NEFU_China/Model"><img id="model" src="https://static.igem.org/mediawiki/2018/0/0c/T--NEFU_China--_MODEL.png">MODEL</a> | <a href="https://2018.igem.org/Team:NEFU_China/Model"><img id="model" src="https://static.igem.org/mediawiki/2018/0/0c/T--NEFU_China--_MODEL.png">MODEL</a> | ||
<ul id="sub_05"> | <ul id="sub_05"> | ||
<li><a href="https://2018.igem.org/Team:NEFU_China/Model" target="_self">OVERVIEW</a></li> | <li><a href="https://2018.igem.org/Team:NEFU_China/Model" target="_self">OVERVIEW</a></li> | ||
− | <li><a href="https://2018.igem.org/Team:NEFU_China/Model1" target="_self"> | + | <li><a href="https://2018.igem.org/Team:NEFU_China/Model1" target="_self">CORRESPONDING COEFFICIENT</a></li> |
− | <li><a href="https://2018.igem.org/Team:NEFU_China/Model2" target="_self"> | + | <li><a href="https://2018.igem.org/Team:NEFU_China/Model2" target="_self">KILLING MODEL</a></li> |
</ul> | </ul> | ||
</li> | </li> | ||
Line 69: | Line 183: | ||
<ul id="sub_06"> | <ul id="sub_06"> | ||
<li><a href="https://2018.igem.org/Team:NEFU_China/Software" target="_self">OVERVIEW</a></li> | <li><a href="https://2018.igem.org/Team:NEFU_China/Software" target="_self">OVERVIEW</a></li> | ||
− | <li><a href="https://2018.igem.org/Team:NEFU_China/Software1" target="_self"> | + | <li><a href="https://2018.igem.org/Team:NEFU_China/Software1" target="_self">CODING</a></li> |
− | <li><a href="https://2018.igem.org/Team:NEFU_China/Software2" target="_self"> | + | <li><a href="https://2018.igem.org/Team:NEFU_China/Software2" target="_self">MISLEADING</a></li> |
+ | <li><a href="https://2018.igem.org/Team:NEFU_China/Software3" target="_self">WORDSEGMENT</a></li> | ||
</ul> | </ul> | ||
</li> | </li> | ||
Line 78: | Line 193: | ||
<li><a href="https://2018.igem.org/Team:NEFU_China/Attributions" target="_self">ATTRIBUTIONS</a></li> | <li><a href="https://2018.igem.org/Team:NEFU_China/Attributions" target="_self">ATTRIBUTIONS</a></li> | ||
<li><a href="https://2018.igem.org/Team:NEFU_China/Members" target="_self">MEMBERS</a></li> | <li><a href="https://2018.igem.org/Team:NEFU_China/Members" target="_self">MEMBERS</a></li> | ||
− | |||
</ul> | </ul> | ||
</li> | </li> | ||
Line 84: | Line 198: | ||
<a href="https://2018.igem.org/Team:NEFU_China/Human_Practices"><img id="humanpractice" src="https://static.igem.org/mediawiki/2018/9/91/T--NEFU_China--_HUMANPRACTICE.png">HUMAN PRACTICE</a> | <a href="https://2018.igem.org/Team:NEFU_China/Human_Practices"><img id="humanpractice" src="https://static.igem.org/mediawiki/2018/9/91/T--NEFU_China--_HUMANPRACTICE.png">HUMAN PRACTICE</a> | ||
<ul id="sub_08"> | <ul id="sub_08"> | ||
+ | <li><a href="https://2018.igem.org/Team:NEFU_China/Human_Practices" target="_self">OVERVIEW</a></li> | ||
<li><a href="https://2018.igem.org/Team:NEFU_China/Gold_integrated" target="_self">GOLD INTEGRATED</a></li> | <li><a href="https://2018.igem.org/Team:NEFU_China/Gold_integrated" target="_self">GOLD INTEGRATED</a></li> | ||
<li><a href="https://2018.igem.org/Team:NEFU_China/Silver" target="_self">SILVER</a></li> | <li><a href="https://2018.igem.org/Team:NEFU_China/Silver" target="_self">SILVER</a></li> | ||
<li><a href="https://2018.igem.org/Team:NEFU_China/Collaborations" target="_self">COLLABORTION</a></li> | <li><a href="https://2018.igem.org/Team:NEFU_China/Collaborations" target="_self">COLLABORTION</a></li> | ||
<li><a href="https://2018.igem.org/Team:NEFU_China/Public_Engagement" target="_self">EDUCATION & PUBLIC ENGAGEMENT</a></li> | <li><a href="https://2018.igem.org/Team:NEFU_China/Public_Engagement" target="_self">EDUCATION & PUBLIC ENGAGEMENT</a></li> | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
</ul> | </ul> | ||
</li> | </li> | ||
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</li> | </li> | ||
</div> | </div> | ||
+ | <div> | ||
+ | <img alt="Protocol" src="https://static.igem.org/mediawiki/2018/0/09/T--NEFU_China--protocol.png" style="width:100%"> | ||
+ | </div> | ||
+ | <div id="content"> | ||
+ | <div class="container"> | ||
+ | <div class="row"> | ||
+ | |||
+ | <div class="span9" style="width:1250px;padding-left: 66px;padding-right: 150px;"> | ||
+ | <h1 class="page-title"> | ||
+ | Cultural Conditions | ||
+ | </h1> | ||
+ | <div class="widget"> | ||
+ | <div class="widget-content" style=" | ||
+ | font-size: 26px!important; | ||
+ | "> | ||
+ | |||
+ | <h1>KEY: <I>Saccharomyces cerevisiae</I> YPH499</h1><br> | ||
+ | <ol> | ||
+ | <li> | ||
+ | Transformation culture conditions: incubator of 30℃, plates with SD/-Leu-agar solid medium. | ||
+ | </li> | ||
+ | <li> | ||
+ | Inoculation culture conditions: a 30℃ constant temperature shaker with 220 rpm in SD/-Leu liquid medium. | ||
+ | </li> | ||
+ | </ol> | ||
+ | |||
+ | <br> | ||
+ | |||
+ | <h1>Lock and Information: <I>Saccharomyces cerevisiae</I> YPH499</h1><br> | ||
+ | <ol> | ||
+ | <li> | ||
+ | Transformation culture conditions: incubator of 30℃, plates with SD/-Ura-agar solid medium.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Inoculation culture conditions: a 30℃ constant temperature shaker with 220 rpm in SD/-Ura liquid medium.<br> | ||
+ | </li> | ||
+ | |||
+ | </ol> | ||
+ | |||
+ | <br> | ||
+ | <h1>pFig2c-Bax: <I>Saccharomyces cerevisiae</I> YPH499</h1><br> | ||
+ | <ol> | ||
+ | <li> | ||
+ | Transformation culture conditions: incubator of 30℃, plates with SD/-Ura-agar solid medium.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Inoculation culture conditions: a 30℃ constant temperature shaker with 220 rpm in SD/-Ura liquid medium.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Inducible expression conditions: a 30℃ constant temperation shaker with 220 rpm in SD/-Ura liquid medium contaning different concentrations of alpha factor.<br> | ||
+ | </li> | ||
+ | </ol> | ||
+ | </div> | ||
+ | </div> | ||
+ | </div> | ||
+ | <div class="span9" style="width:1250px;padding-left: 66px;padding-right: 150px;"> | ||
+ | <h1 class="page-title"> | ||
+ | Vector Construction | ||
+ | </h1> | ||
+ | <div class="widget"> | ||
+ | <div class="widget-content"> | ||
+ | |||
+ | <h1>Vector construction of Lock and Information:</h1><br> | ||
+ | <ol> | ||
+ | <li> | ||
+ | CYC promoter, CYC1 terminator were amplified from genomic DNA of <I>Saccharomyces cerevisiae</I> YPH499 with corresponding primers respectively. And the DNA of the lock and information fragment was synthesized by company with restriction enzyme cutting sites <i>Hind</i>III, <i>EcoR</i>I and <i>EcoR</i>I, <i>Nhe</i>I. | ||
+ | </li> | ||
+ | <li> | ||
+ | Modified CYC1 promoter and CYC1 terminator by adding the HA1 or HA2 by using PCR.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Four fragments of HA1-CYC promoter, Stem loop (the lock), Information and Cyc1 terminator-HA2 the were double-digested with <i>Sac</i>I-<i>Hind</i>III, <i>Hind</i>III-<i>EcoR</i>I, <i>EcoR</i>I-<i>Nhe</i>I, and <i>Nhe</i>I-<i>BamH</i>I, respectively.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Ligated them into an expression vector pesc-Ura by T4 ligase.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | To detemine whether the vector is constructed successfully, conoly PCR and sequencing were done.<br> | ||
+ | </li> | ||
+ | </ol> | ||
+ | |||
+ | <br> | ||
+ | |||
+ | <h1>Vector construction of Lock and EGFP:</h1><br> | ||
+ | <ol> | ||
+ | <li> | ||
+ | CYC promoter, CYC1 terminator were amplified from genomic DNA of <I>Saccharomyces cerevisiae</I> YPH499 with corresponding primers respectively. And the DNA of the lock was synthesized by company with restriction enzyme cutting sites <i>Hind</i>III, <i>EcoR</i>I. The EGFP gene was amplified from palsmid pEGFP-N2, and modified it by adding <i>EcoR</i>I and <i>Nhe</i>I respectively.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Modified CYC1 promoter and CYC1 terminator by adding the HA1 or HA2 by using PCR.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Four fragments of HA1-CYC promoter, Stem loop (the lock), EGFP and Cyc1 terminator-HA2 the were double-digested with <i>Sac</i>I-<i>Hind</i>III, <i>Hind</i>III-<i>EcoR</i>I, <i>EcoR</i>I-<i>Nhe</i>I, and <i>Nhe</i>I-<i>BamH</i>I, respectively.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Ligated them into an expression vector pesc-Ura by T4 ligase.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | To detemine whether the vector is constructed successfully, conoly PCR and sequencing were done.<br> | ||
+ | </li> | ||
+ | </ol> | ||
+ | |||
+ | <br> | ||
+ | |||
+ | <h1>Vector construction of Lock and Gluc:</h1><br> | ||
+ | <ol> | ||
+ | <li> | ||
+ | CYC promoter, CYC1 terminator were amplified from genomic DNA of <I>Saccharomyces cerevisiae</I> YPH499 with corresponding primers respectively. And the DNA of the lock was synthesized by company with restriction enzyme cutting sites <i>HindIII</i>, EcoRI</i>. The Gluc gene was amplified from palsmid pGluc-Basic2, and modified it by adding <i>EcoR</i>I and <i>Nhe</i>I respectively.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Modified CYC1 promoter and CYC1 terminator by adding the HA1 or HA2 by using PCR.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Four fragments of HA1-CYC promoter, Stem loop (the lock), Gluc and Cyc1 terminator-HA2 the were double-digested with <i>Sac</i>I-<i>Hind</i>III, <i>Hind</i>III-<i>EcoR</i>I, <i>EcoR</i>I-<i>Nhe</i>I, and <i>Nhe</i>I-<i>BamH</i>I, respectively.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Ligated them into an expression vector pesc-Ura by T4 ligase.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | To detemine whether the vector is constructed successfully, conoly PCR and sequencing were done.<br> | ||
+ | </li> | ||
+ | </ol> | ||
+ | |||
+ | <br> | ||
+ | |||
+ | <h1>Vector construction of Key:</h1><br> | ||
+ | <ol> | ||
+ | <li> | ||
+ | RPR1 promoter was amplified from plasmid named | ||
+ | pRPR1_gRNA_handle_RPR1t. <br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Modified RPR1 promoter by adding the Key sequence and <i>Spe</i>I, <i>Xho</i>I by using PCR.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | The fragment of pRPR1-Key was double-digested with <i>Spe</i>I and <i>Xho</i>I respectively.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Ligated it into an expression vector pRPR1_gRNA_handle_RPR1t by T4 ligase.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | To detemine whether the vector is constructed successfully, conoly PCR and sequencing were done.<br> | ||
+ | </li> | ||
+ | </ol> | ||
+ | |||
+ | <br> | ||
+ | |||
+ | <h1>Vector construction of suicide switch:</h1><br> | ||
+ | <ol> | ||
+ | <li> | ||
+ | Bax (alpha) Gene was amplified from genomic DNA of 293T cell with corresponding primers respectively.<br> Fig2C promoter fragment was from iGEM parts registry.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Modified Bax fragment by adding <i>Spe</i>I and <i>Hind</i>III by using PCR.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Two fragments of Fig2C promoter, Bax gene were double-digested with <i>EcoR</i>I-<i>Spe</i>I, and <i>Spe</i>I-<i>Hind</i>III, respectively.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Ligated the fragments into an expression vector pesc-Ura by T4 ligase.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | To detemine whether the vector is constructed successfully, conoly PCR and sequencing were done.<br> | ||
+ | </li> | ||
+ | </ol> | ||
+ | |||
+ | <br> | ||
+ | |||
+ | <h1>Vector construction of pFig2C-EGFP</h1><br> | ||
+ | <ol> | ||
+ | <li> | ||
+ | Fig2C promoter fragment was from iGEM parts registry. The EGFP gene was amplified from palsmid pEGFP-N2, and modified it by adding <i>Spe</i>I and <i>Hind</i>III respectively.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Two fragments of Fig2C promoter, EGFP gene were double-digested with <i>EcoR</i>I-</i>Spe</i>I, and <i>Spe</i>I-</i>Hind</i>III, respectively.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Ligated the fragments into an expression vector pesc-Ura by T4 ligase.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | To detemine whether the vector is constructed successfully, conoly PCR and sequencing were done.<br> | ||
+ | </li> | ||
+ | </ol> | ||
+ | |||
+ | <br> | ||
+ | </div> | ||
+ | </div> | ||
+ | |||
+ | </div> | ||
+ | <div class="span9" style="width:1250px;padding-left: 66px;padding-right: 150px;"> | ||
+ | <h1 class="page-title"> | ||
+ | Lock and key interaction verification | ||
+ | </h1> | ||
+ | <div class="widget"> | ||
+ | <div class="widget-content"> | ||
+ | |||
+ | <h1>Qualitative verification using EGFP</h1><br> | ||
+ | <ol> | ||
+ | <li> | ||
+ | Transform expression plasmid pRPR1-Key and pCYC-Lock-EGFP<br> | ||
+ | into YPH499. Plate on SD/-Leu-Ura selection plates and incubate at 30℃ for 36 hours.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Resupend a single colony in 10ml SD/-Ura liquid medium <br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Shake at 30℃ to OD600nm = 0.6<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | 500ul of the bacterial solution was taken out, a picture was prepared, and the expression of EGFP was observed with a fluorescence microscope.<br> | ||
+ | </li> | ||
+ | </ol> | ||
+ | |||
+ | <br> | ||
+ | |||
+ | <h1>Quantitative verification using Gluc</h1><br> | ||
+ | <ol> | ||
+ | <li> | ||
+ | Transform expression plasmid pRPR1-Key and pCYC-Lock-Gluc | ||
+ | into YPH499. Plate on SD/-Leu-Ura selection plates and incubate at 30℃ for 36 hours.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Resupend a single colony in 10ml SD/-Ura liquid medium<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Shake at 30℃ to OD600nm = 0.6<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | 500ul of bacterial solution was taken for ultrasonic cell disruption, and luciferase substrate Coelenterazine was added to detect the expression of luciferase Gluc.<br> | ||
+ | </li> | ||
+ | </ol> | ||
+ | <br> | ||
+ | </div> | ||
+ | </div> | ||
+ | </div> | ||
+ | <div class="span9" style="width:1250px;padding-left: 66px;padding-right: 150px;"> | ||
+ | <h1 class="page-title"> | ||
+ | Fig2C promoter verification of α-factor response | ||
+ | </h1> | ||
+ | <div class="widget"> | ||
+ | <div class="widget-content"> | ||
+ | |||
+ | <h1>Qualitative verification</h1><br> | ||
+ | <ol> | ||
+ | <li> | ||
+ | Transform expression plasmid pFig2C-EGFP into YPH499. Plate on SD/-Leu-Ura selection plates and incubate at 30℃ for 36 hours.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Resupend a single colony in 10ml SD/-Ura liquid medium <br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Shake at 30℃ to OD600nm = 0.6<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | 500ul of the bacterial solution was taken out, a picture was prepared, and the expression of EGFP was observed with a fluorescence microscope.<br> | ||
+ | </li> | ||
+ | </ol> | ||
+ | <br> | ||
+ | |||
+ | <h1>Quantitative verification by q-PCR</h1><br> | ||
+ | <ol> | ||
+ | <li> | ||
+ | Transform expression plasmid pFig2C-EGFP into YPH499. Plate on SD/-Leu-Ura selection plates and incubate at 30℃ for 36 hours.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Resupend a single colony in 10ml SD/-Ura liquid medium <br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Shake at 30℃ to OD600nm = 0.6<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Take 1ml of bacterial solution to extract RNA, perform reverse transcription.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Perform quantitative PCR using reverse transcription products as templates.<br> | ||
+ | </li> | ||
+ | </ol> | ||
+ | |||
+ | <br> | ||
+ | </div> | ||
+ | </div> | ||
+ | </div> | ||
+ | <div class="span9" style="width:1250px;padding-left: 66px;padding-right: 150px;"> | ||
+ | <h1 class="page-title"> | ||
+ | Verification of homologous recombination | ||
+ | </h1> | ||
+ | <div class="widget"> | ||
+ | <div class="widget-content"> | ||
+ | |||
+ | <h1>Qualitative verification using EGFP</h1><br> | ||
+ | <ol> | ||
+ | <li> | ||
+ | The constructed plasmid pCYC-Lock-EGFP was subjected to PCR to obtain a HA1-pCYC-Lock-EGFP-tCYC-HA2 fragment. 10ul of PCR product was taken, purified and transformed. Plate on SD/-Leu-Ura selection plates and incubate at 30℃ for 36 hours.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Resupend a single colony in 10ml SD/-Ura liquid medium <br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Shake at 30℃ to OD600nm = 0.6<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | 500ul of the bacterial solution was taken out, a picture was prepared, and the expression of EGFP was observed with a fluorescence microscope.<br> | ||
+ | </li> | ||
+ | </ol> | ||
+ | <br> | ||
+ | |||
+ | <h1>PCR verification</h1><br> | ||
+ | <ol> | ||
+ | <li> | ||
+ | The constructed plasmid pCYC-Lock-EGFP was subjected to PCR to obtain a HA1-pCYC-Lock-EGFP-tCYC-HA2 fragment. 10ul of PCR product was taken, purified and transformed. Plate on SD/-Leu-Ura selection plates and incubate at 30℃ for 36 hours.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Resupend a single colony in 10ml SD/-Ura liquid medium <br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Shake at 30℃ to OD600nm = 0.6<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | 1 ml of the bacterial solution was taken for DNA extraction.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | The obtained genomic DNA was subjected to PCR using a specific primer to verify whether the homologous recombination was successful.<br> | ||
+ | </li> | ||
+ | |||
+ | </ol> | ||
+ | |||
+ | |||
+ | </div> | ||
+ | </div> | ||
+ | </div> | ||
+ | <div class="span9" style="width:1250px;padding-left: 66px;padding-right: 150px;"> | ||
+ | <h1 class="page-title"> | ||
+ | Information expression verification | ||
+ | </h1> | ||
+ | <div class="widget"> | ||
+ | <div class="widget-content"> | ||
+ | <ol> | ||
+ | <li> | ||
+ | The constructed plasmid pCYC-Lock-EGFP was subjected to PCR to obtain a HA1-pCYC-Lock-EGFP-tCYC-HA2 fragment. 10ul of PCR product was taken, purified and transformed. Plate on SD/-Leu-Ura selection plates and incubate at 30℃ for 36 hours.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Resupend a single colony in 10ml SD/-Ura liquid medium <br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Shake at 30℃ to OD600nm = 0.6<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | 1 ml of the bacterial solution was taken for DNA extraction.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | The obtained genomic DNA was subjected to PCR using a specific primer to verify whether the homologous recombination was successful.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | Take 1ml of bacterial solution to extract RNA, perform reverse transcription to obtain the cDNA.<br> | ||
+ | </li> | ||
+ | <li> | ||
+ | The cDNA was subjected to PCR using specific primers, and the product was purified and submitted to the company for sequencing.<br> | ||
+ | </li> | ||
+ | </ol> | ||
+ | |||
+ | |||
+ | </div> | ||
+ | </div> | ||
+ | </div> | ||
+ | </div> | ||
+ | </div> | ||
+ | </div> | ||
+ | |||
+ | |||
+ | |||
</body> | </body> | ||
</html> | </html> |
Latest revision as of 22:23, 17 October 2018