Difference between revisions of "Team:NEFU China/Composite Part"

 
(8 intermediate revisions by 4 users not shown)
Line 5: Line 5:
 
<title>Composite Parts</title>
 
<title>Composite Parts</title>
 
<link href="https://2018.igem.org/wiki/index.php?title=Template:NEFU_China/CSS-menu&action=raw&ctype=text/css"  rel="stylesheet" type="text/css">
 
<link href="https://2018.igem.org/wiki/index.php?title=Template:NEFU_China/CSS-menu&action=raw&ctype=text/css"  rel="stylesheet" type="text/css">
<link href="https://2018.igem.org/wiki/index.php?title=Template:NEFU_China/CSS-style-basicparts&action=raw&ctype=text/css"  rel="stylesheet" type="text/css">
+
<link href="https://2018.igem.org/wiki/index.php?title=Template:NEFU_China/CSS-style-compositeparts&action=raw&ctype=text/css"  rel="stylesheet" type="text/css">
  
 
<style>
 
<style>
Line 185: Line 185:
 
<div id="menu" style="background-color:rgba(0,0,0,0.6)!important">
 
<div id="menu" style="background-color:rgba(0,0,0,0.6)!important">
 
<li id="nav" style="left: 8%!important; width: 100%!important;">&#160;&#160;&#160;&#160;&#160;&#160;&#160;&#160;&#160;&#160;
 
<li id="nav" style="left: 8%!important; width: 100%!important;">&#160;&#160;&#160;&#160;&#160;&#160;&#160;&#160;&#160;&#160;
<!--<a class="menu1" href="#" style="text-align: right;">☰</a>-->
+
 
<ul class="firstmenu" style="float: left">
 
<ul class="firstmenu" style="float: left">
 
 
Line 196: Line 196:
 
<ul id="sub_02">
 
<ul id="sub_02">
 
<li><a href="https://2018.igem.org/Team:NEFU_China/Background" target="_self">BACKGROUND</a></li>
 
<li><a href="https://2018.igem.org/Team:NEFU_China/Background" target="_self">BACKGROUND</a></li>
<li><a href="https://2018.igem.org/Team:NEFU_China/Description" target="_self">DESCRIPTION</a></li>
+
<li><a href="https://2018.igem.org/Team:NEFU_China/Description" target="_self">DESCRIPTION &amp; DESIGN</a></li>
<li><a href="https://2018.igem.org/Team:NEFU_China/Design" target="_self">DESIGN</a></li>
+
<li><a href="https://2018.igem.org/Team:NEFU_China/Coding book" target="_self">CODE BOOK</a></li>
<li><a href="https://2018.igem.org/Team:NEFU_China/Coding book" target="_self">CODING BOOK</a></li>
+
 
  </ul>
 
  </ul>
 
  </li>
 
  </li>
 
 
 
<li class="mainlevel" id="mainlevel_03">
 
<li class="mainlevel" id="mainlevel_03">
  <a href="https://2018.igem.org/Team:NEFU_China/Experiment"><img id="parts" src="https://static.igem.org/mediawiki/2018/6/62/T--NEFU_China--_RESULTS.png">EXPERIMENT</a>
+
  <a href="https://2018.igem.org/Team:NEFU_China/Demonstrate"><img id="parts" src="https://static.igem.org/mediawiki/2018/6/62/T--NEFU_China--_RESULTS.png">EXPERIMENTS</a>
 
  <ul id="sub_03">
 
  <ul id="sub_03">
 
  <li><a href="https://2018.igem.org/Team:NEFU_China/Lock_Key" target="_self">LOCK &amp; KEY</a></li>
 
  <li><a href="https://2018.igem.org/Team:NEFU_China/Lock_Key" target="_self">LOCK &amp; KEY</a></li>
  <li><a href="https://2018.igem.org/Team:NEFU_China/Suicide" target="_self">SUICIDE</a></li>
+
  <li><a href="https://2018.igem.org/Team:NEFU_China/Suicide" target="_self">INFORMATION DESTRUCTION</a></li>
  <li><a href="https://2018.igem.org/Team:NEFU_China/Splicing" target="_self">SPLICING</a></li>
+
  <li><a href="https://2018.igem.org/Team:NEFU_China/Splicing" target="_self">Pre-RNA SPLICING</a></li>
 
  <li><a href="https://2018.igem.org/Team:NEFU_China/Demonstrate" target="_self">DEMONSTRATE</a></li>
 
  <li><a href="https://2018.igem.org/Team:NEFU_China/Demonstrate" target="_self">DEMONSTRATE</a></li>
 
  <hr>
 
  <hr>
Line 225: Line 222:
 
  <ul id="sub_05">
 
  <ul id="sub_05">
 
  <li><a href="https://2018.igem.org/Team:NEFU_China/Model" target="_self">OVERVIEW</a></li>
 
  <li><a href="https://2018.igem.org/Team:NEFU_China/Model" target="_self">OVERVIEW</a></li>
  <li><a href="https://2018.igem.org/Team:NEFU_China/Model1" target="_self">MODEL1</a></li>
+
  <li><a href="https://2018.igem.org/Team:NEFU_China/Model1" target="_self">CORRESPONDING COEFFICIENT</a></li>
  <li><a href="https://2018.igem.org/Team:NEFU_China/Model2" target="_self">MODEL2</a></li>
+
  <li><a href="https://2018.igem.org/Team:NEFU_China/Model2" target="_self">KILLING MODEL</a></li>
 
  </ul>
 
  </ul>
 
  </li>
 
  </li>
Line 243: Line 240:
 
  <li><a href="https://2018.igem.org/Team:NEFU_China/Attributions" target="_self">ATTRIBUTIONS</a></li>
 
  <li><a href="https://2018.igem.org/Team:NEFU_China/Attributions" target="_self">ATTRIBUTIONS</a></li>
 
  <li><a href="https://2018.igem.org/Team:NEFU_China/Members" target="_self">MEMBERS</a></li>
 
  <li><a href="https://2018.igem.org/Team:NEFU_China/Members" target="_self">MEMBERS</a></li>
 
  <li><a href="https://2018.igem.org/Team:NEFU_China/Sponsoring" target="_self">SPONSORING</a></li>
 
 
  </ul>
 
  </ul>
 
  </li>
 
  </li>
Line 250: Line 245:
 
  <a href="https://2018.igem.org/Team:NEFU_China/Human_Practices"><img id="humanpractice" src="https://static.igem.org/mediawiki/2018/9/91/T--NEFU_China--_HUMANPRACTICE.png">HUMAN PRACTICE</a>
 
  <a href="https://2018.igem.org/Team:NEFU_China/Human_Practices"><img id="humanpractice" src="https://static.igem.org/mediawiki/2018/9/91/T--NEFU_China--_HUMANPRACTICE.png">HUMAN PRACTICE</a>
 
  <ul id="sub_08">
 
  <ul id="sub_08">
 +
  <li><a href="https://2018.igem.org/Team:NEFU_China/Human_Practices" target="_self">OVERVIEW</a></li>
 
  <li><a href="https://2018.igem.org/Team:NEFU_China/Gold_integrated" target="_self">GOLD INTEGRATED</a></li>
 
  <li><a href="https://2018.igem.org/Team:NEFU_China/Gold_integrated" target="_self">GOLD INTEGRATED</a></li>
 
  <li><a href="https://2018.igem.org/Team:NEFU_China/Silver" target="_self">SILVER</a></li>
 
  <li><a href="https://2018.igem.org/Team:NEFU_China/Silver" target="_self">SILVER</a></li>
Line 336: Line 332:
 
     <div class="row banner">
 
     <div class="row banner">
 
         <div class="banner-text">
 
         <div class="banner-text">
            <h1 class="responsive-headline" style="color: yellow;font-size: 80px;">Composite parts</h1>
+
       
 
              
 
              
 
         </div>
 
         </div>
Line 342: Line 338:
 
</header>  
 
</header>  
 
<div class="basicpart-content">
 
<div class="basicpart-content">
<h1 style="font-size: 65px;color: yellow;height: 84px;">Composite parts</h1>
+
<h1 style="font-size: 65px;color: orange;height: 84px;">Composite parts</h1>
<table class="table">
+
<table class="table" style="
 +
    margin-top: 35px!important;
 +
    font-size: 26px!important;
 +
">
 
    <thead>
 
    <thead>
 
<tr>
 
<tr>
Line 352: Line 351:
 
    </thead>
 
    </thead>
 
    <tbody>
 
    <tbody>
 +
 +
<tr>
 +
<td>        <a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2542011" style="color:orange;"> BBa_K2542011</a></td>
 +
<td><a href="" style="color: yellow">pRPR1-Antisense-tRPR1</a></td>
 +
 +
<td>
 +
<p style="
 +
    font-size: 26px!important;
 +
">
 +
This part serves as a key structure in our scheme. This plasmid expresses a small RNA that can specifically bind to the secondary structure of the corresponding stem loop and resolve its structure, which allows the DNA sequence downstream the stem loop to be transcribed. </p></td>
 +
</tr>
 +
 
<tr>
 
<tr>
<td>[1]</td>
+
<td>       <a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2542012" style="color:orange;"> BBa_K2542012</a></td>
 
<td><a href="#" style="color: yellow">HA1-pCYC-Stemloop1-EGFP-tCYC1-HA2</a></td>
 
<td><a href="#" style="color: yellow">HA1-pCYC-Stemloop1-EGFP-tCYC1-HA2</a></td>
 
 
<td><p>
+
<td style="
 +
    font-size: 26px!important;
 +
"><p style="
 +
    font-size: 26px!important;
 +
">
 
This part serves as a lock structure in our scheme, in which EGFP is used as a substitute for our encrypted information, and can be used to verify the function of our lock part. Thus, only when a specific small RNA binds to the stem loop and changes the stem loop secondary structure, EGFP transcription can be initiated and EGFP expression can be achieved. This unit contains six parts: the CYC promoter, STEMLOOP, EGFP coding sequence, the CYC terminator and homology arms HA1 and HA2. HA1 and HA2 act as homology arms to achieve homologous recombination, which can insert the DNA with the lock structure sequence into the yeast genome. The stemloop acts as a lock to protect our encrypted information to be transmitted.</p></td>
 
This part serves as a lock structure in our scheme, in which EGFP is used as a substitute for our encrypted information, and can be used to verify the function of our lock part. Thus, only when a specific small RNA binds to the stem loop and changes the stem loop secondary structure, EGFP transcription can be initiated and EGFP expression can be achieved. This unit contains six parts: the CYC promoter, STEMLOOP, EGFP coding sequence, the CYC terminator and homology arms HA1 and HA2. HA1 and HA2 act as homology arms to achieve homologous recombination, which can insert the DNA with the lock structure sequence into the yeast genome. The stemloop acts as a lock to protect our encrypted information to be transmitted.</p></td>
 
</tr>  
 
</tr>  
 
 
 
<tr>
 
<tr>
<td>[2]</td>
+
<td>       <a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2542013" style="color:orange;"> BBa_K2542013</a></td>
<td><a href="" style="color: yellow">pRPR1-antisense-tRPR1</a></td>
+
+
<td>
+
<p>
+
This part serves as a key structure in our scheme. This plasmid expresses a small RNA that can specifically bind to the secondary structure of the corresponding stem loop and resolve its structure, which allows the DNA sequence downstream the stem loop to be transcribed. </p></td>
+
</tr>
+
<tr>
+
<td>[3]</td>
+
 
<td><a href="" style="color: yellow">pFig2c-hBax-tCYC1</a></td>
 
<td><a href="" style="color: yellow">pFig2c-hBax-tCYC1</a></td>
 
 
 
<td>
 
<td>
<p>
+
<p style="
This plasmid allows a-type yeast to sense the pheromone α factor secreted by α-type yeast. The a-type S. cerevisiae expresses Bax protein, which can arrest cell cycle and reduce cell density. Therefore, upon induction by α factor the a-type yeast cells carrying this plasmid undergo a decrease in cell density, which can be used to protect our encrypted information. </p></td>
+
    font-size: 26px!important;
 +
">
 +
This plasmid allows a-type yeast to sense the pheromone α factor secreted by α-type yeast. The a-type <i>Saccharomyces cerevisiae</i> expresses Bax protein, which can arrest cell cycle and reduce cell density. Therefore, upon induction by α factor the a-type yeast cells carrying this plasmid undergo a decrease in cell density, which can be used to protect our encrypted information. </p></td>
 
</tr>  
 
</tr>  
 
 
Line 380: Line 389:
 
</table>
 
</table>
  
</div>
 
 
<div id="background-reference">
 
<h1 style="font-size: 65px;color: yellow!important;height: 70px;">Reference</h1>
 
<p> <a href="#"> [1] Pu, Jinyue and Zinkus-Boltz, Julia and Dickinson, Bryan C. (2017) Evolution of a split RNA polymerase as a versatile biosensor platform. <em><em>Nat Chem Biol 13</em></em> , 432-438 </a>
 
<br>
 
<a href="#"> [2] Pu, Jinyue and Zinkus-Boltz, Julia and Dickinson, Bryan C. (2017) Evolution of a split RNA polymerase as a versatile biosensor platform. <em><em>Nat Chem Biol 13</em></em> , 432-438 </a>
 
<br>
 
<a href="#"> [3] Pu, Jinyue and Zinkus-Boltz, Julia and Dickinson, Bryan C. (2017) Evolution of a split RNA polymerase as a versatile biosensor platform. <em><em>Nat Chem Biol 13</em></em> , 432-438 </a>
 
<br>
 
<a href="#"> [4] Pu, Jinyue and Zinkus-Boltz, Julia and Dickinson, Bryan C. (2017) Evolution of a split RNA polymerase as a versatile biosensor platform. <em><em>Nat Chem Biol 13</em></em> , 432-438 </a>
 
<br>
 
<a href="#"> [5] Pu, Jinyue and Zinkus-Boltz, Julia and Dickinson, Bryan C. (2017) Evolution of a split RNA polymerase as a versatile biosensor platform. <em><em>Nat Chem Biol 13</em></em> , 432-438 </a>
 
<br>
 
<a href="#"> [6] Pu, Jinyue and Zinkus-Boltz, Julia and Dickinson, Bryan C. (2017) Evolution of a split RNA polymerase as a versatile biosensor platform. <em><em>Nat Chem Biol 13</em></em> , 432-438 </a>s
 
</p>
 
<br><br><br>
 
 
</div>
 
</div>
  

Latest revision as of 22:35, 17 October 2018

Composite Parts

Composite parts

Number Name Description
BBa_K2542011 pRPR1-Antisense-tRPR1

This part serves as a key structure in our scheme. This plasmid expresses a small RNA that can specifically bind to the secondary structure of the corresponding stem loop and resolve its structure, which allows the DNA sequence downstream the stem loop to be transcribed.

BBa_K2542012 HA1-pCYC-Stemloop1-EGFP-tCYC1-HA2

This part serves as a lock structure in our scheme, in which EGFP is used as a substitute for our encrypted information, and can be used to verify the function of our lock part. Thus, only when a specific small RNA binds to the stem loop and changes the stem loop secondary structure, EGFP transcription can be initiated and EGFP expression can be achieved. This unit contains six parts: the CYC promoter, STEMLOOP, EGFP coding sequence, the CYC terminator and homology arms HA1 and HA2. HA1 and HA2 act as homology arms to achieve homologous recombination, which can insert the DNA with the lock structure sequence into the yeast genome. The stemloop acts as a lock to protect our encrypted information to be transmitted.

BBa_K2542013 pFig2c-hBax-tCYC1

This plasmid allows a-type yeast to sense the pheromone α factor secreted by α-type yeast. The a-type Saccharomyces cerevisiae expresses Bax protein, which can arrest cell cycle and reduce cell density. Therefore, upon induction by α factor the a-type yeast cells carrying this plasmid undergo a decrease in cell density, which can be used to protect our encrypted information.