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− | <!--<a class="menu1" href="#" style="text-align: right;">☰</a>--> | + | |
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| <ul id="sub_02"> | | <ul id="sub_02"> |
| <li><a href="https://2018.igem.org/Team:NEFU_China/Background" target="_self">BACKGROUND</a></li> | | <li><a href="https://2018.igem.org/Team:NEFU_China/Background" target="_self">BACKGROUND</a></li> |
− | <li><a href="https://2018.igem.org/Team:NEFU_China/Description" target="_self">DESCRIPTION</a></li> | + | <li><a href="https://2018.igem.org/Team:NEFU_China/Description" target="_self">DESCRIPTION & DESIGN</a></li> |
− | <li><a href="https://2018.igem.org/Team:NEFU_China/Design" target="_self">DESIGN</a></li>
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| <li><a href="https://2018.igem.org/Team:NEFU_China/Coding book" target="_self">CODE BOOK</a></li> | | <li><a href="https://2018.igem.org/Team:NEFU_China/Coding book" target="_self">CODE BOOK</a></li> |
| </ul> | | </ul> |
| </li> | | </li> |
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| <li class="mainlevel" id="mainlevel_03"> | | <li class="mainlevel" id="mainlevel_03"> |
− | <a href="https://2018.igem.org/Team:NEFU_China/Experiment"><img id="parts" src="https://static.igem.org/mediawiki/2018/6/62/T--NEFU_China--_RESULTS.png">EXPERIMENT</a> | + | <a href="https://2018.igem.org/Team:NEFU_China/Demonstrate"><img id="parts" src="https://static.igem.org/mediawiki/2018/6/62/T--NEFU_China--_RESULTS.png">EXPERIMENTS</a> |
| <ul id="sub_03"> | | <ul id="sub_03"> |
| <li><a href="https://2018.igem.org/Team:NEFU_China/Lock_Key" target="_self">LOCK & KEY</a></li> | | <li><a href="https://2018.igem.org/Team:NEFU_China/Lock_Key" target="_self">LOCK & KEY</a></li> |
− | <li><a href="https://2018.igem.org/Team:NEFU_China/Suicide" target="_self">INFORMATION DESTROYED</a></li> | + | <li><a href="https://2018.igem.org/Team:NEFU_China/Suicide" target="_self">INFORMATION DESTRUCTION</a></li> |
− | <li><a href="https://2018.igem.org/Team:NEFU_China/Splicing" target="_self">Pre-mRNA SPLICING</a></li> | + | <li><a href="https://2018.igem.org/Team:NEFU_China/Splicing" target="_self">Pre-RNA SPLICING</a></li> |
| <li><a href="https://2018.igem.org/Team:NEFU_China/Demonstrate" target="_self">DEMONSTRATE</a></li> | | <li><a href="https://2018.igem.org/Team:NEFU_China/Demonstrate" target="_self">DEMONSTRATE</a></li> |
| <hr> | | <hr> |
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| <ul id="sub_05"> | | <ul id="sub_05"> |
| <li><a href="https://2018.igem.org/Team:NEFU_China/Model" target="_self">OVERVIEW</a></li> | | <li><a href="https://2018.igem.org/Team:NEFU_China/Model" target="_self">OVERVIEW</a></li> |
− | <li><a href="https://2018.igem.org/Team:NEFU_China/Model1" target="_self">MODEL1</a></li> | + | <li><a href="https://2018.igem.org/Team:NEFU_China/Model1" target="_self">CORRESPONDING COEFFICIENT</a></li> |
− | <li><a href="https://2018.igem.org/Team:NEFU_China/Model2" target="_self">MODEL2</a></li> | + | <li><a href="https://2018.igem.org/Team:NEFU_China/Model2" target="_self">KILLING MODEL</a></li> |
| </ul> | | </ul> |
| </li> | | </li> |
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| <li><a href="https://2018.igem.org/Team:NEFU_China/Attributions" target="_self">ATTRIBUTIONS</a></li> | | <li><a href="https://2018.igem.org/Team:NEFU_China/Attributions" target="_self">ATTRIBUTIONS</a></li> |
| <li><a href="https://2018.igem.org/Team:NEFU_China/Members" target="_self">MEMBERS</a></li> | | <li><a href="https://2018.igem.org/Team:NEFU_China/Members" target="_self">MEMBERS</a></li> |
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− | <li><a href="https://2018.igem.org/Team:NEFU_China/Sponsoring" target="_self">SPONSORING</a></li>
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| </ul> | | </ul> |
| </li> | | </li> |
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| <a href="https://2018.igem.org/Team:NEFU_China/Human_Practices"><img id="humanpractice" src="https://static.igem.org/mediawiki/2018/9/91/T--NEFU_China--_HUMANPRACTICE.png">HUMAN PRACTICE</a> | | <a href="https://2018.igem.org/Team:NEFU_China/Human_Practices"><img id="humanpractice" src="https://static.igem.org/mediawiki/2018/9/91/T--NEFU_China--_HUMANPRACTICE.png">HUMAN PRACTICE</a> |
| <ul id="sub_08"> | | <ul id="sub_08"> |
| + | <li><a href="https://2018.igem.org/Team:NEFU_China/Human_Practices" target="_self">OVERVIEW</a></li> |
| <li><a href="https://2018.igem.org/Team:NEFU_China/Gold_integrated" target="_self">GOLD INTEGRATED</a></li> | | <li><a href="https://2018.igem.org/Team:NEFU_China/Gold_integrated" target="_self">GOLD INTEGRATED</a></li> |
| <li><a href="https://2018.igem.org/Team:NEFU_China/Silver" target="_self">SILVER</a></li> | | <li><a href="https://2018.igem.org/Team:NEFU_China/Silver" target="_self">SILVER</a></li> |
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| <div class="row banner"> | | <div class="row banner"> |
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− | <h1 class="responsive-headline" style="color: yellow;font-size: 80px;">Basic parts</h1> | + | |
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| </div> | | </div> |
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− | </header> | + | </header> |
| <div class="basicpart-content"> | | <div class="basicpart-content"> |
− | <h1 style="font-size: 65px;color: yellow;height: 84px;">Basic parts</h1> | + | <h1 style="font-size: 65px;color: orange;height: 84px;">Basic parts</h1> |
− | <table class="table"> | + | <table class="table" style=" |
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− | <td>[1]</td> | + | <td><a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1154001" style="color:orange;">BBa_K1154001</a></td> |
| <td><a href="#" style="color: yellow">pFUS1</a></td> | | <td><a href="#" style="color: yellow">pFUS1</a></td> |
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| <td><p> | | <td><p> |
− | Our team were aimed at adjusting the expression level of any existing promoter. Thus, we modified the Kozak sequence of the promoter in the plasmid BBa_K775004, a part from the University of the TU-Delft 2012 iGEM team. Our goal is to reduce the expression efficacy of this vector, and make it suitable to express a suicide gene for information destruction. To reduce the expression efficiency of this part in yeast, we modified the Kozak sequence by mutating the sequence “AAAAAA” to “GCCACC”. After that, our information destruction system was built and kill the information host yeast in a desired period of time. See more details in the basic part BBa_K2542014. We used the enhanced green fluorescent protein (EGFP) to test the effect of this modification. The generated plasmid allows a type yeast to sense the α factor secreted by α-type yeast and express EGFP. Thus, when the promoter was activated by factor secreted by α-type yeast, the EGFP would be expressed. Thus, the EGFP expression would be the standard to tell the strength of our improved promoter.</p></td> | + | Our team were aimed at adjusting the expression level of any existing promoter. Thus, we modified the Kozak sequence of the promoter in the plasmid <a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K775004" style="color:orange;">BBa_K775004</a>, a part from the University of the TU-Delft 2012 iGEM team. Our goal is to reduce the expression efficacy of this vector, and make it suitable to express a suicide gene for information destruction. To reduce the expression efficiency of this part in yeast, we modified the Kozak sequence by mutating the sequence “AAAAAA” to “GCCACC”. After that, our information destruction system was built and kill the information host yeast in a desired period of time. See more details in the basic part <a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2542014" style="color:orange;">BBa_K2542014</a>. We used the enhanced green fluorescent protein (EGFP) to test the effect of this modification. The generated plasmid allows a type yeast to sense the α factor secreted by α-type yeast and express EGFP. Thus, when the promoter was activated by factor secreted by α-type yeast, the EGFP would be expressed. Thus, the EGFP expression would be the standard to tell the strength of our improved promoter.</p></td> |
| </tr> | | </tr> |
| | | |
| <tr> | | <tr> |
− | <td>[2]</td> | + | <td> <a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1829002" style="color:orange;"> BBa_K1829002</a></td> |
| <td><a href="" style="color: yellow">pFig2c</a></td> | | <td><a href="" style="color: yellow">pFig2c</a></td> |
| | | |
| <td> | | <td> |
| <p> | | <p> |
− | Our team attempted to verify the strengthen of a promoter called Fig2c in a part of BBa_K1829002 from the iGEM 2015 UCSF team. For this purpose, we inserted the pFig2c promoter and EGFP coding sequence into the pesc-ura plasmid, and transferred it into a-type <i>Saccharomyces cerevisiae</i>. The expression of the Fig2c promoter was induced by adding a mating factor. When the Fig2c promoter is induced, EGFP is expressed. In this way, we can detect the strengthen of the Fig2c promoter using EGFP as a reporter. </p></td> | + | Our team attempted to verify the strengthen of a promoter called Fig2c in a part of <a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K1829002" style="color:orange;">BBa_K1829002</a> from the iGEM 2015 UCSF team. For this purpose, we inserted the pFig2c promoter and EGFP coding sequence into the pesc-ura plasmid, and transferred it into a-type <i>Saccharomyces cerevisiae</i>. The expression of the Fig2c promoter was induced by adding α mating factor. When the Fig2c promoter is induced, EGFP is expressed. In this way, we can detect the strengthen of the Fig2c promoter using EGFP as a reporter. </p></td> |
| </tr> | | </tr> |
| | | |
| + | <tr> |
| + | <td> <a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2542000" style="color:orange;"> BBa_K2542000</a></td> |
| + | <td><a href="#" style="color: yellow">Riboswitch1</a></td> |
| + | |
| + | <td><p> |
| + | A type of riboswitch, onstitutive promoter derived from the yeast, and it can initiate medium-intensity gene expression. We use it to control the transcription of our information.</p></td> |
| + | </tr> |
| + | |
| + | <tr> |
| + | <td> <a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2542001" style="color:orange;"> BBa_K2542001</a></td> |
| + | <td><a href="#" style="color: yellow">Riboswitch2</a></td> |
| + | |
| + | <td><p> |
| + | A type of riboswitch, onstitutive promoter derived from the yeast, and it can initiate medium-intensity gene expression. We use it to control the transcription of our information.</p></td> |
| + | </tr> |
| + | <tr> |
| + | <td> <a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2542002" style="color:orange;"> BBa_K2542002</a></td> |
| + | <td><a href="#" style="color: yellow">Riboswitch3</a></td> |
| + | |
| + | <td><p> |
| + | A type of riboswitch, onstitutive promoter derived from the yeast, and it can initiate medium-intensity gene expression. We use it to control the transcription of our information.</p></td> |
| + | </tr> |
| + | <tr> |
| + | <td> <a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2542003" style="color:orange;"> BBa_K2542003</a></td> |
| + | <td><a href="#" style="color: yellow">Key1</a></td> |
| + | |
| + | <td><p> |
| + | A Small RNA which can change the secondary structure of the riboswitch (<a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2542000" style="color:orange;">BBa_K2542000</a>). It can transcribe a small RNA that adapts to the riboswitch (<a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2542000" style="color:orange;">BBa_K2542000</a>) and alters its secondary structure so that transcription is not blocked by the riboswitch.</p></td> |
| + | </tr> |
| + | <tr> |
| + | <td> <a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2542004" style="color:orange;"> BBa_K2542004</a></td> |
| + | <td><a href="#" style="color: yellow">Key2</a></td> |
| + | |
| + | <td><p> |
| + | A Small RNA which can change the secondary structure of the riboswitch (<a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2542001" style="color:orange;">BBa_K2542001</a>). It can transcribe a small RNA that adapts to the riboswitch (<a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2542001" style="color:orange;">BBa_K2542001</a>) and alters its secondary structure so that transcription is not blocked by the riboswitch.</p></td> |
| + | </tr> |
| + | <tr> |
| + | <td> <a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2542005" style="color:orange;"> BBa_K2542005</a></td> |
| + | <td><a href="#" style="color: yellow">Key3</a></td> |
| + | |
| + | <td><p> |
| + | A Small RNA which can change the secondary structure of the riboswitch (<a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2542002" style="color:orange;">BBa_K2542002</a>). It can transcribe a small RNA that adapts to the riboswitch (<a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2542002" style="color:orange;">BBa_K2542002</a>) and alters its secondary structure so that transcription is not blocked by the riboswitch.</p></td> |
| + | </tr> |
| + | <tr> |
| + | <td> <a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2542006" style="color:orange;"> BBa_K2542006</a></td> |
| + | <td><a href="#" style="color: yellow">pUra</a></td> |
| + | |
| + | <td><p> |
| + | This is a constitutive promoter that initiates gene expression in yeast.</p></td> |
| + | </tr> |
| + | <tr> |
| + | <td> <a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2542007" style="color:orange;"> BBa_K2542007</a></td> |
| + | <td><a href="#" style="color: yellow">Homologous arm1</a></td> |
| + | |
| + | <td><p> |
| + | It' a part of the transposable element of Saccharomyces cerevisiae, which can be used to perform homologous recombination of DNA to insert the sequence of interest into the genome of Saccharomyces cerevisiae. The other is <a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2542008" style="color:orange;">BBa_K2542008</a>.</p></td> |
| + | </tr> |
| + | <tr> |
| + | <td> <a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2542008" style="color:orange;"> BBa_K2542008</a></td> |
| + | <td><a href="#" style="color: yellow">Homologous arm2</a></td> |
| + | |
| + | <td><p> |
| + | It' a part of the transposable element of Saccharomyces cerevisiae, which can be used to perform homologous recombination of DNA to insert the sequence of interest into the genome of Saccharomyces cerevisiae. The other is <a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2542007" style="color:orange;">BBa_K2542007</a>.</p></td> |
| + | </tr> |
| + | <tr> |
| + | <td> <a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2542009" style="color:orange;"> BBa_K2542009</a></td> |
| + | <td><a href="#" style="color: yellow">pRPR1</a></td> |
| + | |
| + | <td><p> |
| + | It' a promoter capable of being recognized by RNA polymerase III, and the RNA driven by it does not add 5' cap and 3' poly A tail. This is a promoter and is usually used with the RPR1 terminator (<a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2542010" style="color:orange;">BBa_K2542010</a>).</p></td> |
| + | </tr> |
| + | <tr> |
| + | <td> <a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2542010" style="color:orange;"> BBa_K2542010</a></td> |
| + | <td><a href="#" style="color: yellow">tRPR1</a></td> |
| + | |
| + | <td><p> |
| + | This is a terminator and is usually used with the RPR1 promoter (<a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2542009" style="color:orange;">BBa_K2542009</a>).</p></td> |
| + | </tr> |
| </tbody> | | </tbody> |
| </table> | | </table> |
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− | <div id="background-reference">
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− | <h1 style="font-size: 65px;color: yellow!important;height: 70px;">Reference</h1>
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− | <p> <a href="#"> [1] Pu, Jinyue and Zinkus-Boltz, Julia and Dickinson, Bryan C. (2017) Evolution of a split RNA polymerase as a versatile biosensor platform. <em><em>Nat Chem Biol 13</em></em> , 432-438 </a>
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− | <br>
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− | <a href="#"> [2] Pu, Jinyue and Zinkus-Boltz, Julia and Dickinson, Bryan C. (2017) Evolution of a split RNA polymerase as a versatile biosensor platform. <em><em>Nat Chem Biol 13</em></em> , 432-438 </a>
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− | <br>
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− | <a href="#"> [3] Pu, Jinyue and Zinkus-Boltz, Julia and Dickinson, Bryan C. (2017) Evolution of a split RNA polymerase as a versatile biosensor platform. <em><em>Nat Chem Biol 13</em></em> , 432-438 </a>
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− | <br>
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− | <a href="#"> [4] Pu, Jinyue and Zinkus-Boltz, Julia and Dickinson, Bryan C. (2017) Evolution of a split RNA polymerase as a versatile biosensor platform. <em><em>Nat Chem Biol 13</em></em> , 432-438 </a>
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− | <br>
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− | <a href="#"> [5] Pu, Jinyue and Zinkus-Boltz, Julia and Dickinson, Bryan C. (2017) Evolution of a split RNA polymerase as a versatile biosensor platform. <em><em>Nat Chem Biol 13</em></em> , 432-438 </a>
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− | <br>
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− | <a href="#"> [6] Pu, Jinyue and Zinkus-Boltz, Julia and Dickinson, Bryan C. (2017) Evolution of a split RNA polymerase as a versatile biosensor platform. <em><em>Nat Chem Biol 13</em></em> , 432-438 </a>s
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− | </p>
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