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{{:Team:Jilin_China/CSS}} | {{:Team:Jilin_China/CSS}} | ||
− | |||
{{:Team:Jilin_China/Navbar}} | {{:Team:Jilin_China/Navbar}} | ||
{{:Team:Jilin_China/Js}} | {{:Team:Jilin_China/Js}} | ||
− | <html>< | + | {{:Team:Jilin_China/Home_CSS}} |
+ | {{:Team:Jilin_China/Footer_CSS}} | ||
+ | <html> | ||
+ | <style> | ||
− | < | + | |
− | <h1 | + | </style> |
+ | </html> | ||
+ | |||
+ | <html> | ||
+ | <div class="s1" style="display:none;height:99999%;"></div> | ||
+ | <section class="ss1 home_banner"> | ||
+ | <div class="banner_logo"></div> | ||
+ | <h1><span>The Collection of</span><br><span>SynRT</span><br><span>with Different Sensing Temperatures</span></h1> | ||
+ | <div class="bg-giraffe"> | ||
+ | <div> | ||
+ | <div></div> | ||
+ | <div></div> | ||
+ | <div></div> | ||
+ | <div></div> | ||
+ | </div> | ||
+ | </div> | ||
+ | </section> | ||
+ | <section class="ss2 normal abstract"> | ||
+ | <div> | ||
+ | <h1>ABSTRACT</h1> | ||
+ | <p>Many strategies could be used to regulate the gene expression responding to temperature changes in bacterial cells. A well-known class of biological thermoregulatory elements includes RNA-based thermosensors (RTs), which are located in the 5'- | ||
+ | untranslated region in mRNA. RTs could sense temperature shift and influence the mRNA stability or ribosome accessibility, thereby controlling translation efficiency.</p> | ||
+ | <p>However, natural RNA-based thermosensors have complex structure and narrow sensing temperature range, which become the biggest limitation in their application. To address this issue, we have created a synthetic RNA-based thermosensor (SynRT) toolkit with different sensing temperatures. Additionally, we built a matched search engine for users. | ||
+ | <p>The SynRT toolkit version has been updated from 1.0 to 3.0, and the latest version is composed of four types of SynRTs:</p> | ||
+ | </div> | ||
+ | </section> | ||
+ | <section class="ss3 normal home_design"> | ||
+ | <div class="bacteria"> | ||
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+ | |||
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+ | <center><p><b>Cold-inducible RNA-based Thermosensor</b></p></center> | ||
+ | |||
+ | |||
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+ | } | ||
+ | |||
+ | .cold-repressive .g { | ||
+ | fill: #fff794; | ||
+ | stroke: #fbb03b; | ||
+ | stroke-width: 7px; | ||
+ | } | ||
+ | .cold-repressive .j { | ||
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+ | stroke-miterlimit: 10; | ||
+ | stroke-width: 7.63px; | ||
+ | stroke-dasharray: 4 16; | ||
+ | stroke-linecap:round; | ||
+ | fill:none; | ||
+ | opacity:1; | ||
+ | transition: all 0.3s ease-out 3s; | ||
+ | } | ||
+ | |||
+ | .cold-repressive .i { | ||
+ | opacity:0.35; | ||
+ | fill: #ed1c24; | ||
+ | stroke: #ed1c24; | ||
+ | stroke-width: 4.39px; | ||
+ | transition: all 0.3s ease-out 3s; | ||
+ | } | ||
+ | .cold-repressive.svg_checked .hydrogen-bond{ | ||
+ | opacity:0; | ||
+ | transition: all 0.3s linear 0s; | ||
+ | } | ||
+ | .cold-repressive.svg_checked .i{ | ||
+ | opacity:0; | ||
+ | transition: all 0.3s ease-out 0s; | ||
+ | } | ||
+ | .cold-repressive.svg_checked .j{ | ||
+ | opacity:0; | ||
+ | transition: all 0.3s ease-out 0s; | ||
+ | } | ||
+ | .cold-repressive.svg_checked #RNAse_3{ | ||
+ | transform: translateX(60px); | ||
+ | opacity:0; | ||
+ | transition: all 0.5s ease-out 0s; | ||
+ | } | ||
+ | .cold-repressive.svg_checked #ribosome_text{ | ||
+ | opacity:0; | ||
+ | transition: all 0.5s linear 0s; | ||
+ | } | ||
+ | .cold-repressive.svg_checked #loop{ | ||
+ | transform: translateY(130px); | ||
+ | } | ||
+ | .cold-repressive #left,#right{ | ||
+ | stroke-dasharray:130,500; | ||
+ | transition: all 2s ease-out; | ||
+ | } | ||
+ | .cold-repressive.svg_checked #left{ | ||
+ | stroke-dashoffset:-135; | ||
+ | |||
+ | } | ||
+ | .cold-repressive.svg_checked #right{ | ||
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+ | |||
+ | } | ||
+ | .cold-repressive.svg_checked #left_s,#right_s{ | ||
+ | stroke-dasharray:60,500; | ||
+ | color:black; | ||
+ | |||
+ | } | ||
+ | .cold-repressive.svg_checked #left_s{ | ||
+ | stroke-dashoffset:-265; | ||
+ | } | ||
+ | .cold-repressive.svg_checked #right_s{ | ||
+ | stroke-dashoffset:-82; | ||
+ | } | ||
+ | |||
+ | .cold-repressive .hydrogen-bond{ | ||
+ | opacity:0.3; | ||
+ | transition: all 0.3s linear 1s; | ||
+ | } | ||
+ | .cold-repressive #RNAse_3{ | ||
+ | transform: translateX(0px); | ||
+ | opacity:1; | ||
+ | transition: all 1s ease-out 2s; | ||
+ | } | ||
+ | .cold-repressive #ribosome_text{ | ||
+ | opacity:0; | ||
+ | transition: all 0.5s ease-out 0s; | ||
+ | } | ||
+ | .cold-repressive #loop{ | ||
+ | transform: translateY(0px); | ||
+ | transition: all 2s ease-out; | ||
+ | } | ||
+ | .cold-repressive #left{ | ||
+ | stroke-dashoffset:0; | ||
+ | stroke:red; | ||
+ | } | ||
+ | .cold-repressive #right{ | ||
+ | stroke-dashoffset:-277; | ||
+ | stroke:red; | ||
+ | } | ||
+ | .cold-repressive #left_s,#right_s{ | ||
+ | stroke-dasharray:60,500; | ||
+ | transition: all 2s ease-out; | ||
+ | } | ||
+ | .cold-repressive #left_s{ | ||
+ | stroke-dashoffset:-130; | ||
+ | } | ||
+ | .cold-repressive #right_s{ | ||
+ | stroke-dashoffset:-217; | ||
+ | } | ||
+ | |||
+ | </style> | ||
+ | </defs> | ||
+ | <title>Stroke Version_1</title> | ||
+ | <g> | ||
+ | <g class="hydrogen-bond"> | ||
+ | <line class="a" x1="284.86" y1="144.21" x2="320.72" y2="144.21"/> | ||
+ | <line class="b" x1="284.86" y1="125.32" x2="320.72" y2="125.32"/> | ||
+ | <line class="c" x1="284.86" y1="163.09" x2="320.72" y2="163.09"/> | ||
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+ | <line class="b" x1="284.86" y1="200.87" x2="320.72" y2="200.87"/> | ||
+ | <line class="c" x1="284.86" y1="219.75" x2="320.72" y2="219.75"/> | ||
+ | </g> | ||
+ | <g id="text"> | ||
+ | <text class="d" transform="translate(429.01 185.45)"></text> | ||
+ | <text class="e" transform="translate(123.8 185.45)">RC</text> | ||
+ | |||
+ | </g> | ||
+ | |||
+ | <text id="ribosome_text" class="h" transform="translate(429.01 165.45)">RNAse III</text> | ||
+ | |||
+ | <path id="loop" class="f" d="M327,101.42c0-21.25,19.2-20.39,19.2-52.51,0-24-16.62-43.41-43.42-43.41s-43.41,19.44-43.41,43.41c0,28.79,19.19,29.92,19.19,52.51"/> | ||
+ | <g> | ||
+ | <path id="right_s" class="f" d="M594.25,247.5l-252.2.21a15,15,0,0,1-15-15V101.42"/> | ||
+ | <path id="left_s" class="f" d="M278.57,101.42V232.67a15,15,0,0,1-15.05,15H5.5"/> | ||
+ | </g> | ||
+ | <g> | ||
+ | <path id="right" class="f" d="M594.25,247.5l-252.2.21a15,15,0,0,1-15-15V101.42"/> | ||
+ | <path id="left" class="f" d="M278.57,101.42V232.67a15,15,0,0,1-15.05,15H5.5"/> | ||
+ | </g> | ||
+ | <g id="RNAse_3"> | ||
+ | <path class="g" d="M405.71,98.59h-51a12,12,0,0,0-12,12V176.7L381.85,188l-39.14,11.29v16.31a12,12,0,0,0,12,12h51a12,12,0,0,0,12-12v-105A12,12,0,0,0,405.71,98.59Z"/> | ||
+ | <circle class="g" cx="362.29" cy="134.87" r="1"/> | ||
+ | </g> | ||
+ | <polyline class="j" points="342.65 178.9 301.01 178.9 301.01 227.5 247.66 227.5"/> | ||
+ | <path class="i" d="M362.41,134.87,236.66,163.09c-11-15.57-13-33.39,0-54.92l125.75,26.7"/> | ||
+ | </g> | ||
+ | </svg> | ||
+ | <center><p><b>Cold-repressible RNA-based Thermosensor</b></p></center> | ||
+ | |||
+ | |||
+ | <script type="text/javascript"> | ||
+ | $(document).ready(function(){ | ||
+ | $("#checked_4").click(function(){ | ||
+ | if($(this).is(':checked')){ | ||
+ | $(".cold-repressive").addClass("svg_checked"); | ||
+ | }else{ | ||
+ | $(".cold-repressive").removeClass("svg_checked"); | ||
+ | } | ||
+ | }); | ||
+ | }); | ||
+ | </script> | ||
+ | </div> | ||
+ | <center><a href="https://2018.igem.org/Team:Jilin_China/Design">Learn More ></a></center> | ||
+ | </div> | ||
+ | <div style="clear:both"></div> | ||
+ | </section> | ||
+ | <section class="ss3 normal hp"> | ||
+ | <h1>Human Practices</h1> | ||
+ | <div> | ||
+ | <p>Several Exploration Improved</p> | ||
+ | <p>OUR TOOLKITs</p> | ||
+ | <p>Meanwhile Inspiring Us to Make</p> | ||
+ | <p>A DECADE <br>WORKFLOW</p> | ||
+ | </div> | ||
+ | <img src="https://static.igem.org/mediawiki/2018/e/e1/T--Jilin_China--Home--HP--1.svg" /> | ||
+ | <a href="https://2018.igem.org/Team:Jilin_China/Human_Practices">Hear Our Stories</a> | ||
+ | <br clear="all"/> | ||
+ | <div> | ||
+ | <p>Several Innovative Kits</p> | ||
+ | <p>Promoting Us to</p> | ||
+ | <p>SPREAD and DISCUSS</p> | ||
+ | <p>Synthetic Biology</p> | ||
+ | </div> | ||
+ | <img src="https://static.igem.org/mediawiki/2018/b/bc/T--Jilin_China--Home--HP--2.svg"/> | ||
+ | <a href="https://2018.igem.org/Team:Jilin_China/Public_Engagement">Hear Our Stories</a> | ||
+ | <br clear="all"/> | ||
+ | </section> | ||
+ | <section class="ss4 normal model"> | ||
+ | <h1>Model</h1><img src="https://static.igem.org/mediawiki/2018/b/b2/T--Jilin_China--Home_Model-curve.png" width="100%"></img> | ||
+ | <a href="https://2018.igem.org/Team:Jilin_China/Model">Learn More > </a> | ||
+ | </section> | ||
+ | <section class="ss5 normal"> | ||
+ | <h1>More</h1> | ||
+ | <div> | ||
+ | <div> | ||
+ | <div class="ss5_background"> | ||
+ | <a href="https://2018.igem.org/Team:Jilin_China/Background"><h3>Background</h3></a> | ||
+ | </div> | ||
+ | <div class="ss5_project"> | ||
+ | <a href="https://2018.igem.org/Team:Jilin_China/Project/Overview"><h3>Project</h3></a> | ||
+ | </div> | ||
+ | </div> | ||
+ | <div> | ||
+ | <div class="ss5_result"> | ||
+ | <a href="https://2018.igem.org/Team:Jilin_China/Result/Version_1"><h3>Results</h3></a> | ||
+ | </div> | ||
+ | <div class="ss5_engine"> | ||
+ | <a href="https://2018.igem.org/Team:Jilin_China/Part/Search_Engine"><h3>Explorer</h3></a> | ||
+ | </div> | ||
+ | </div> | ||
+ | <div> | ||
+ | <div class="ss5_part"> | ||
+ | <a href="https://2018.igem.org/Team:Jilin_China/Parts"><h3>Parts</h3></a> | ||
+ | </div> | ||
+ | <div class="ss5_team"> | ||
+ | <a href="https://2018.igem.org/Team:Jilin_China/Team"><h3>Team</h3></a> | ||
+ | </div> | ||
+ | </div> | ||
+ | </div> | ||
+ | </section> | ||
+ | <style> | ||
+ | .ss5_background{ | ||
+ | background:url(https://static.igem.org/mediawiki/2018/a/a4/T--Jilin_China--Background--Banner.jpeg) no-repeat center; | ||
+ | background-size:cover; | ||
+ | } | ||
+ | .ss5_project{ | ||
+ | background:url(https://static.igem.org/mediawiki/2018/5/55/T--Jilin_China--Project--Overview--Banner.jpeg) no-repeat center; | ||
+ | background-size:cover; | ||
+ | } | ||
+ | |||
+ | .ss5_result{ | ||
+ | background:url(https://static.igem.org/mediawiki/2018/3/3b/T--Jilin_China--Banner--Results.jpeg) no-repeat center; | ||
+ | background-size:cover; | ||
+ | } | ||
+ | .ss5_engine{ | ||
+ | background:url(https://static.igem.org/mediawiki/2018/8/8f/T--Jilin_China--Achievement--Banner.jpeg) no-repeat center; | ||
+ | background-size:cover; | ||
+ | } | ||
+ | |||
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+ | background:url(https://static.igem.org/mediawiki/2018/f/f7/T--Jilin_China--Parts--Banner.jpeg) no-repeat center; | ||
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+ | background:url(https://static.igem.org/mediawiki/2018/6/64/T--Jilin_China--Team--Banner.jpeg) no-repeat center; | ||
+ | background-size:cover; | ||
+ | } | ||
+ | </style> | ||
</html> | </html> | ||
+ | {{:Team:Jilin_China/Footer}} | ||
+ | {{:Team:Jilin_China/Home_Js}} |
Latest revision as of 03:54, 18 October 2018
ABSTRACT
Many strategies could be used to regulate the gene expression responding to temperature changes in bacterial cells. A well-known class of biological thermoregulatory elements includes RNA-based thermosensors (RTs), which are located in the 5'- untranslated region in mRNA. RTs could sense temperature shift and influence the mRNA stability or ribosome accessibility, thereby controlling translation efficiency.
However, natural RNA-based thermosensors have complex structure and narrow sensing temperature range, which become the biggest limitation in their application. To address this issue, we have created a synthetic RNA-based thermosensor (SynRT) toolkit with different sensing temperatures. Additionally, we built a matched search engine for users.
The SynRT toolkit version has been updated from 1.0 to 3.0, and the latest version is composed of four types of SynRTs:
Heat-inducible RNA-based Thermosensor
Heat-repressible RNA-based Thermosensor
Cold-inducible RNA-based Thermosensor
Cold-repressible RNA-based Thermosensor
Human Practices
Several Exploration Improved
OUR TOOLKITs
Meanwhile Inspiring Us to Make
A DECADE
WORKFLOW
Several Innovative Kits
Promoting Us to
SPREAD and DISCUSS
Synthetic Biology
Model
Learn More >More