Difference between revisions of "Team:DLUT China/Safety"

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<article id="A1"><span style="font-size:30px;font-family: 'Cinzel', serif;">Safety of chassis:</span><br><br><div style="font-size:20px;text-align:justify;width:800px;font-family: 'Oxygen', sans-serif;">We use Escherichia coli as our chassis,the names of all strains are:Escherichia coli strain Nissle, BL21 Competent E. coli, DH5-Alpha Escherichia coli strain.Our chassis organisms are all widely-used E.coli strains.So they're all very safe, and even if they get out of the lab, the risk can be effectively controlled. </div></article>
 
<article id="A1"><span style="font-size:30px;font-family: 'Cinzel', serif;">Safety of chassis:</span><br><br><div style="font-size:20px;text-align:justify;width:800px;font-family: 'Oxygen', sans-serif;">We use Escherichia coli as our chassis,the names of all strains are:Escherichia coli strain Nissle, BL21 Competent E. coli, DH5-Alpha Escherichia coli strain.Our chassis organisms are all widely-used E.coli strains.So they're all very safe, and even if they get out of the lab, the risk can be effectively controlled. </div></article>
 
<article id="A2"><span style="font-size:30px;font-family: 'Cinzel', serif;">Safety of parts:</span><br><br>
 
<article id="A2"><span style="font-size:30px;font-family: 'Cinzel', serif;">Safety of parts:</span><br><br>
<div style="font-size:20px;text-align:justify;width:800px;font-family: 'Oxygen', sans-serif;">Fluorescence is widely used as a representative of promoter activity. Although this is an indirect measurement, fluorescent proteins such as green fluorescent protein (GFP) provide useful insights into expression levels and can be continuously monitored without destroying the cells.<br><br>
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We add lethal sequences to our plasmids, and there are two ways to do that.<br>
  
First, measure three calibration protocols: use LUDOX CL-X (45% colloidal silica suspension) as a single point reference to obtain conversion factor to convert absorbance (Abs600) to OD 600, use silica gel beads - microsphere suspension Obtain a particle standard curve,the fluorescein standard curve was measured with fluorescein at an excitation wavelength of 495 nm and an emission wavelength of this filter of 525 nm.
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SRNA in plasmid 1 is an inhibitory element of lysis2 in plasmid 2, which inhibits lysis2 expression. SRNA in plasmid 2 is an inhibiting element of lysis1 in plasmid 1, which inhibits lysis1 expression. When one of the plasmids is lost, the lytic protein of the other plasmids will not be inhibited, that is, the bacteria will express the lytic protein and cause the bacteria to lyse, thus killing the bacteria that lose the plasmids, so as to prevent the loss of plasmids.<br>
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After making the standard curve, we successfully transformed the eight plasmids provided by the measurement committee and performed cell assays according to the protocol.
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Due to the high concentration of uric acid in the intestines of hyperuricemia patients, we use uric acid as the response signal of the lethal system. When the uric acid concentration exceeds the threshold, HucR is inhibited by uric acid, and Phuco is in the open state. Subsequent genes can be transcribed and translated normally, but since lysis1 is inhibited by sRNA, the bacteria will not be cracked. When the uric acid concentration was lower than the threshold value, HucR inhibited Phuco, and Phuco was turned off. Subsequent genes could not be transcribed and translated, so that sRNA inhibiting lysis2 could not be expressed, while lysis2 could be normally expressed, resulting in death of bacteria. Due to the high concentration of uric acid in the intestinal tract of uric acid patients, the death rate of bacteria in the patient is not high. However, when the bacteria are lost to the external environment, the uric acid concentration in the external environment is lower than the threshold value, which activates the lethal system of the bacteria, leading to the death of bacteria cracking and reaching the purpose and effect of in vitro death.<br>
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Death in vitro was controlled by pCold to lysis3. PCold is cold shock plasmid in vitro in 16 ℃ under the condition of using IPTG induction of 3 h can activate lysis3, killed bacteria cracking, achieve the purpose of in vitro to death and effect. PCold came from the IGEM team of Northeastern University, and our two teams had a friendly interlab exchange.<br>
 
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<article id="A3"><span style="font-size:30px;font-family: 'Cinzel', serif;">Safety of lab:</span><br><br>
 
<article id="A3"><span style="font-size:30px;font-family: 'Cinzel', serif;">Safety of lab:</span><br><br>

Revision as of 01:22, 5 October 2018

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Safety

Safety of chassis:

We use Escherichia coli as our chassis,the names of all strains are:Escherichia coli strain Nissle, BL21 Competent E. coli, DH5-Alpha Escherichia coli strain.Our chassis organisms are all widely-used E.coli strains.So they're all very safe, and even if they get out of the lab, the risk can be effectively controlled.
Safety of parts:

We add lethal sequences to our plasmids, and there are two ways to do that.
SRNA in plasmid 1 is an inhibitory element of lysis2 in plasmid 2, which inhibits lysis2 expression. SRNA in plasmid 2 is an inhibiting element of lysis1 in plasmid 1, which inhibits lysis1 expression. When one of the plasmids is lost, the lytic protein of the other plasmids will not be inhibited, that is, the bacteria will express the lytic protein and cause the bacteria to lyse, thus killing the bacteria that lose the plasmids, so as to prevent the loss of plasmids.
Due to the high concentration of uric acid in the intestines of hyperuricemia patients, we use uric acid as the response signal of the lethal system. When the uric acid concentration exceeds the threshold, HucR is inhibited by uric acid, and Phuco is in the open state. Subsequent genes can be transcribed and translated normally, but since lysis1 is inhibited by sRNA, the bacteria will not be cracked. When the uric acid concentration was lower than the threshold value, HucR inhibited Phuco, and Phuco was turned off. Subsequent genes could not be transcribed and translated, so that sRNA inhibiting lysis2 could not be expressed, while lysis2 could be normally expressed, resulting in death of bacteria. Due to the high concentration of uric acid in the intestinal tract of uric acid patients, the death rate of bacteria in the patient is not high. However, when the bacteria are lost to the external environment, the uric acid concentration in the external environment is lower than the threshold value, which activates the lethal system of the bacteria, leading to the death of bacteria cracking and reaching the purpose and effect of in vitro death.
Death in vitro was controlled by pCold to lysis3. PCold is cold shock plasmid in vitro in 16 ℃ under the condition of using IPTG induction of 3 h can activate lysis3, killed bacteria cracking, achieve the purpose of in vitro to death and effect. PCold came from the IGEM team of Northeastern University, and our two teams had a friendly interlab exchange.
Safety of lab:

We wear plastic gloves, white coats and goggles when performing the experiment. In addition, the experimental team of our team conducted safety training and had a clear understanding and deep understanding of how to ensure safety during the experiment. During the experiment, we will use the knowledge we received during safety training to ensure safety.
At the same time, we always guarantee the clean and orderly laboratory.

Discussion:

1. According to the Abs results at each time point 0 hours and 6 hours, the cell concentration of Device 1 is significantly lower than that of other devices.
2. According to the fluorescence raw readings, the fluorescence of Device 3 is weakest, the fluorescence of Device 4 is strongest. And the fluorescence of each group increased from 0h to 6 h, abnormally, the fluorescence of the two bacteria of Device 5 was different.
3. There is significant difference in plasmid conversion rate between negative control (device 1) and positive control (device 2).