Collaborations

Parallel to the development of our project we have made a series of collaborations with other teams in order to obtain mutual benefit.

Attendance to Meet Ups

The meets ups bring several advantages to the teams. It is one of the simplest ways to reach a greater number of people to whom you can explain your project. And therefore they allow you to know first-hand the projects of the rest of the teams so that you can consult and clarify doubts. These meetings also allow for more related and powerful collaborations thanks to knowing the rest of the teams in person. And last but not least, they allow you to practice exposing your project with a view to improving in the Giant Jamboree.

Our team attended two meet ups that took place in the month of August.

Marseille

Mediterranean Meet Up (Marseille)

This meet up took place between Thursday 9 and Friday 10 August in the city of Marseille and was organized by the team of this city, the Aix-Marseille. In it, all the teams from the Mediterranean area were summoned, so they ended up attending both France and Spain. Francisco, Gonzalo and Ivan attended this meet up on behalf of the team.

The event began with a reception in which all teams had their first informal contact. Subsequently, a 5 minutes presentation of each of the projects was organized, summarizing the concept on which the proyect was based, the work carried out and the plans to complete it. After the exhibition, each team answered the questions that could have the jury and the rest of the teams.

Later they invited us to a joint meal. In the afternoon it was organized a sightseeing tour of the city, but due to inclement weather it had to be suspended, although we could enjoy a pleasant evening of board games and conversations with the rest of the teams. At night a meeting was also organized in a pub to end a day where we had met many new people.

The second (and last day) had two interesting activities. The first was the meetings with different experts from the university, which privately asked each team about controversial issues. To see if these issues had been taken into account and the possible solutions and consequences were debated.

To close the event, a poster presentation session was held, which was very enriching to know how to present our project in Boston..

One of the things that were achieved in this meet up was the agreement with the UPF-CRG-Barcelona group to organize an activity in their meet up. Activity that is explained in the following session (and that gave rise to a greater collaboration).
Barcelona

Spanish Meet Up (Barcelona)

This meet up took place between Saturday 18 and Monday 20 August in the city of Barcelona and was organized by one of the two teams of this same city, the UPF-CRG-Barcelona. In it, all the teams from Spain were called, which all but the Valencia team attended. To this meet up they were representing the whole team: Laura, Iván and Francisco. The meet up took place in the Biomedical Research Park of Barcelona (PRBB), center where the host team operates and where they started with a welcome activity. This activity consisted of a game where each one of the assistants of each team presented themselves, so that the subsequent environment was much more relaxed.

The next activity was the one organized by our team. In this activity we proposed to carry out a collaborative guide in which each group would give the main ideas on how they have solved the main problems that have arisen in iGEM. The structure we proposed was followed. We collected these ideas and wrote a complete guide. We explain this collaboration in a later section of the collaborations. After this, some playful activities were carried out on the beach, including volleyball games.

During the morning of the second day, a more detailed presentation of each team's project was made. There was 30 minutes to expose each project in detail. This activity was very useful because the rest of the teams, besides getting to know the details of each project well, could intervene to give advice on how to make the presentations. Each team took a series of points in which they could be reinforced in the face of the presentation of the Giant Jamboree.

In the afternoon the time was taken to take a tour in the tourist center of the city and ended up having dinner with a picnic in the Parc Guell. A viewpoint that have views of the entire city at night.

During the morning of the last day, to close the meet up, we were able to attend to some enriching expert talks. They offered us their views on synthetic biology and they explained the works in which they are immersed today.

Back to Meet up Index

Organization of a Meet Up: Another European Meet Up

This initiative emerged in the meet up of Marseille with a view to carrying it out in the meet up of Barcelona. In it, we agreed with the team of UPF-CRG-Barcelona organize an activity in their meet up.

iGEM guide for new teams in Spain

This initiative emerged in the meet up of Marseille with a view to carrying it out in the meet up of Barcelona. In it, we agreed with the team of UPF-CRG-Barcelona organize an activity in their meet up.

Spain is a country with a low participation of teams in iGEM compared to other European countries. We have been the first team that has emerged in the city of Madrid. At the time of forming the team and carrying out all the activities of the contest, we usually find ourselves with a lack of knowledge. To promote the emergence of new teams in our country and facilitate the resolution of the problems they have at the beginning we decided to create a guide. In this guide, the main aspects of iGEM will be collected and explained and a series of tips will be given to face them. These tips would be a sharing of the way this year had each team to deal with them.

With this idea in mind, we presented the collaboration during the meet up to the rest of the teams and they were all happy to help. The participating teams in this collaboration besides ours are:

o UPF-CRG-Barcelona.
o BIO-IQS-Barcelona.
o Navarra BG (High School).

Initially we have an index of main points of iGEM and we made a brainstorming where each team could contribute their ways of solving these aspects or could suggest new sections. For this part of the activity a glass of the center where the meet up was made was used and each participant was free to put the ideas in the section he wanted, writing on the glass.

Collaboration with Tec-Monterrey Team

We met the Tec-Monterrey team thanks to the fact that they got in touch with us through social networks. As we share language with this team it has been easier for us to relate and thanks to it, 2 collaborations have come out:

Computational modeling of structures of interest

This has been the most important collaboration with this team. Our team has a member with knowledge of prediction and editing computation of biological molecule structures. They asked us if we could obtain the structure of 3 proteins of interest for their project and perform some animation in which the protein was observed from different points of view. To obtain all the structures of the proteins, the procedure explained in the Computational improvement section was followed:

Protein Structure Predicion

The 3 proteins were the following ones:

CAS1 and CAS2

These two proteins often form a complex and have been studied on numerous occasions. The animations are the following:
RT EC86

This protein is a retrotranscritasa. And yet it has not been so studied and its structure had to be predicted.

Mentoring in the wiki building

For the reason that in our team there is no one specialized in web design and wiki building, nobody had the necessary knowledge to start with the formation of the wiki. That's why we took advantage of the fact that we already had contact with this team to ask them to mentor us in some decisions when building the wiki. He was asked for help us in understanding how to upload the different files, about the operation of the templates and the scripts.

Mentoring of Valencia Team

With the Valencia team we made a minor collaboration. We also consulted this team some of the doubts that we had in the construction of the wiki. They gave us some tips for obtaining the necessary templates and where to get them.

Team:Madrid-OLM/Collaborations