Team:UCopenhagen/Background
Bacteria
Bacteria containing and actively expressing the injectisome system are pathogenic, meaning that they can make you sick. The system allows all kinds of different bacteria to shuttle disease-triggering proteins through the surface of our body and into our cells, which obviously makes you ill. The illness can vary somewhat from bacteria to bacteria, but the species that donated the injectisome-part we used - enteropathogenic Escherichia coli (EPEC) - triggers diarrhea in humans, most prevalent in children (1).
The Injectisome
The injectisome (Type III secretion system) is a needle-like, protein structure used by some pathogenic bacteria (in our case E. coli) to inject effector proteins into other cells, for example in our gut, to make the environment more habitable for pathogenesis. For example, Injectisome-producing E. coli uses the injectisome to attach itself to the intestinal cells and inject these effector proteins into them to make them favorable for colonization (1).
The injectisome´s structure is quite complex but functionally can be easily understood. A good analogy would be to describe it as a syringe - a molecular syringe that is! The injectisome uses proteins which are called translocons which spontanously assemble in lipid membranes, here they form docking sites for the injectisome. When attaching at these docking sites the load of the syringe or the injectisome rather, is injected. The load being signal-tagged proteins (2).
Injectifacts: -The Injectisome translocates more than 25 effector proteins, which make the infected cell habitable -The EPEC injectisome in our strain is one of the biggest injectisome reaching up to 700 nm -The SIEC strain we used can have a diameter of 0.68-1.0µm, which is about 70 times smaller than the thickness of your hair (3)
Chaperones
We expressed the chaperones CesF and CesT in our bacteria E. coli K-12, which are proteins that facilitate effector protein secretion in E. coli type-III secretion system. The chaperones are essential for facilitating the unfolding of the target protein before it is secreted through the injectisome and across the membrane (2).
Signal sequence
In order for the naturally occurring pathogenic E.coli strain, to translocate proteins through the injectisome, a signal sequence peptide is needed. The signal ensures secretion of specific proteins. This signal we can highjack and fuse to our own proteins of interest, for a designed secretion.
A better version
As such, the effects of that bacteria are unpleasant to say the least, and it's very much a must to to ensure the bacteria used for our applications is non-pathogenic. For our applications we are hijacking these natural systems of the bacteria and use them for purposes desirable to us.
In order to ensure this, we acquired a bacterial strain with the help of Luis Ángel Fernández Herrero (PhD, Principal Investigator, National Center for Biotechnology (CNB) Madrid, Spain), that expressed the EPEC injectisome in the non-pathogenic E. coli K-12 chassis.
This means that the useful injectisome has been separated from the disease-causing parts of the bacteria and is now functional in a non-pathogenic bacteria instead. This new and improved - for our purposes at least - EPEC bacteria was dubbed Synthetic injector E. coli (SIEC) (2)
The new SIEC bacteria has the advantages of having the injectisome system, but is not capable of making the natural disease-causing effector-proteins alongside it. This strain is therefore way more suitable for our application of producing pure proteins which you read about here!
References:
(1) Ochoa, T. J., Barletta, F., Contreras, C., & Mercado, E. (2008). New insights into the epidemiology of enteropathogenic Escherichia coli infection. Transactions of the Royal Society of Tropical Medicine and Hygiene, 102(9), 852–856. https://doi.org/10.1016/j.trstmh.2008.03.017https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2575077/
(2) Ruano-Gallego, D., Álvarez, B., & Fernández, L. Á. (2015). Engineering the Controlled Assembly of Filamentous Injectisomes in E. coli K-12 for Protein Translocation into Mammalian Cells. ACS Synthetic Biology. https://doi.org/10.1021/acssynbio.5b00080
(3) Zaritsky A, Woldringh CL. Chromosome replication rate and cell shape in Escherichia coli: lack of coupling. J Bacteriol. 1978 Aug135(2):581-7PubMed ID355235