Difference between revisions of "Team:Evry Paris-Saclay/Parts"
| Line 56: | Line 56: | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td><a href=" http://parts.igem.org/Part:BBa_K2675000 | + | <td><a href="http://parts.igem.org/Part:BBa_K2675000 " target=__blank">BBa_K2675000 </a></td> |
<td> AimR-Phi3T </td> | <td> AimR-Phi3T </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td><a href=" http://parts.igem.org/Part:BBa_K2675001 | + | <td><a href="http://parts.igem.org/Part:BBa_K2675001" target=__blank">BBa_K2675001 </a></td> |
<td> AimP-Phi3T </td> | <td> AimP-Phi3T </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td><a href=" http://parts.igem.org/Part:BBa_K2675002 | + | <td><a href="http://parts.igem.org/Part:BBa_K2675002 " target=__blank">BBa_K2675002 </a></td> |
<td> OmpA-SAIRGA </td> | <td> OmpA-SAIRGA </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td><a href=" http://parts.igem.org/Part:BBa_K2675003 | + | <td><a href="http://parts.igem.org/Part:BBa_K2675003 " target=__blank">BBa_K2675003 </a></td> |
<td> PelB-SAIRGA </td> | <td> PelB-SAIRGA </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td><a href=" http://parts.igem.org/Part:BBa_K2675004 | + | <td><a href="http://parts.igem.org/Part:BBa_K2675004 " target=__blank">BBa_K2675004 </a></td> |
<td> TAT-SAIRGA </td> | <td> TAT-SAIRGA </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td><a href=" http://parts.igem.org/Part:BBa_K2675005 | + | <td><a href="http://parts.igem.org/Part:BBa_K2675005 " target=__blank">BBa_K2675005 </a></td> |
<td> sfGFP </td> | <td> sfGFP </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td><a href=" http://parts.igem.org/Part:BBa_K2675006 | + | <td><a href="http://parts.igem.org/Part:BBa_K2675006 " target=__blank">BBa_K2675006 </a></td> |
<td> sfGFP-LVAtag </td> | <td> sfGFP-LVAtag </td> | ||
</tr> | </tr> | ||
| Line 93: | Line 93: | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td><a href=" http://parts.igem.org/Part:BBa_K2675010 | + | <td><a href="http://parts.igem.org/Part:BBa_K2675010 " target=__blank">BBa_K2675010 </a></td> |
<td> Synthetic RBS designed for AimR of Phi3T </td> | <td> Synthetic RBS designed for AimR of Phi3T </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td><a href=" http://parts.igem.org/Part:BBa_K2675011 | + | <td><a href="http://parts.igem.org/Part:BBa_K2675011 " target=__blank">BBa_K2675011 </a></td> |
<td> Synthetic RBS designed for AimP of Phi3T </td> | <td> Synthetic RBS designed for AimP of Phi3T </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td><a href=" http://parts.igem.org/Part:BBa_K2675012 | + | <td><a href="http://parts.igem.org/Part:BBa_K2675012 " target=__blank">BBa_K2675012 </a></td> |
<td> Synthetic RBS designed for OmpA-SAIRGA </td> | <td> Synthetic RBS designed for OmpA-SAIRGA </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td><a href=" http://parts.igem.org/Part:BBa_K2675013 | + | <td><a href="http://parts.igem.org/Part:BBa_K2675013 " target=__blank">BBa_K2675013 </a></td> |
<td> Synthetic RBS designed for PelB-SAIRGA </td> | <td> Synthetic RBS designed for PelB-SAIRGA </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td><a href=" http://parts.igem.org/Part:BBa_K2675014 | + | <td><a href="http://parts.igem.org/Part:BBa_K2675014 " target=__blank">BBa_K2675014 </a></td> |
<td> Synthetic RBS designed for TAT-SAIRGA </td> | <td> Synthetic RBS designed for TAT-SAIRGA </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td><a href=" http://parts.igem.org/Part:BBa_K2675015 | + | <td><a href="http://parts.igem.org/Part:BBa_K2675015 " target=__blank">BBa_K2675015 </a></td> |
<td> Synthetic RBS designed for sfGFP </td> | <td> Synthetic RBS designed for sfGFP </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td><a href=" http://parts.igem.org/Part:BBa_K2675016 | + | <td><a href="http://parts.igem.org/Part:BBa_K2675016 " target=__blank">BBa_K2675016 </a></td> |
<td> Synthetic RBS designed for sfGFP </td> | <td> Synthetic RBS designed for sfGFP </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td><a href=" http://parts.igem.org/Part:BBa_K2675017 | + | <td><a href="http://parts.igem.org/Part:BBa_K2675017 " target=__blank">BBa_K2675017 </a></td> |
<td> Synthetic RBS designed for sfGFP </td> | <td> Synthetic RBS designed for sfGFP </td> | ||
</tr> | </tr> | ||
| Line 133: | Line 133: | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td><a href=" http://parts.igem.org/Part:BBa_K2675020 | + | <td><a href="http://parts.igem.org/Part:BBa_K2675020 " target=__blank">BBa_K2675020 </a></td> |
<td> pAimX(full) promoter of phage phi3T </td> | <td> pAimX(full) promoter of phage phi3T </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td><a href=" http://parts.igem.org/Part:BBa_K2675021 | + | <td><a href="http://parts.igem.org/Part:BBa_K2675021 " target=__blank">BBa_K2675021 </a></td> |
<td> pAimX(short) promoter of phage phi3T </td> | <td> pAimX(short) promoter of phage phi3T </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td><a href=" http://parts.igem.org/Part:BBa_K2675022 | + | <td><a href="http://parts.igem.org/Part:BBa_K2675022 " target=__blank">BBa_K2675022 </a></td> |
<td> pAimX(short)-J23110 hybrid promoter </td> | <td> pAimX(short)-J23110 hybrid promoter </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td><a href=" http://parts.igem.org/Part:BBa_K2675023 | + | <td><a href="http://parts.igem.org/Part:BBa_K2675023 " target=__blank">BBa_K2675023 </a></td> |
<td> pAimX(full-1)-J23110 hybrid promoter </td> | <td> pAimX(full-1)-J23110 hybrid promoter </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td><a href=" http://parts.igem.org/Part:BBa_K2675024 | + | <td><a href="http://parts.igem.org/Part:BBa_K2675024 " target=__blank">BBa_K2675024 </a></td> |
<td> pAimX(full-2)-J23110 hybrid promoter </td> | <td> pAimX(full-2)-J23110 hybrid promoter </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td><a href=" http://parts.igem.org/Part:BBa_K2675025 | + | <td><a href="http://parts.igem.org/Part:BBa_K2675025 " target=__blank">BBa_K2675025 </a></td> |
<td> pAimX(full-3)-J23110 hybrid promoter </td> | <td> pAimX(full-3)-J23110 hybrid promoter </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td><a href=" http://parts.igem.org/Part:BBa_K2675026 | + | <td><a href="http://parts.igem.org/Part:BBa_K2675026 " target=__blank">BBa_K2675026 </a></td> |
<td> J23110 truncated promoter (-10 only) + cloning Scar </td> | <td> J23110 truncated promoter (-10 only) + cloning Scar </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td><a href=" http://parts.igem.org/Part:BBa_K2675090 | + | <td><a href="http://parts.igem.org/Part:BBa_K2675090 " target=__blank">BBa_K2675090 </a></td> |
<td> pAimX(full-noTerminator-v1) promoter of phage phi3T </td> | <td> pAimX(full-noTerminator-v1) promoter of phage phi3T </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td><a href=" http://parts.igem.org/Part:BBa_K2675091 | + | <td><a href="http://parts.igem.org/Part:BBa_K2675091 " target=__blank">BBa_K2675091 </a></td> |
<td> pAimX(full-noTerminator-v2) promoter of phage phi3T </td> | <td> pAimX(full-noTerminator-v2) promoter of phage phi3T </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td><a href=" http://parts.igem.org/Part:BBa_K2675092 | + | <td><a href="http://parts.igem.org/Part:BBa_K2675092 " target=__blank">BBa_K2675092 </a></td> |
<td> pAimX(full-noTerminator-v3) promoter of phage phi3T </td> | <td> pAimX(full-noTerminator-v3) promoter of phage phi3T </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td><a href=" http://parts.igem.org/Part:BBa_K2675093 | + | <td><a href="http://parts.igem.org/Part:BBa_K2675093 " target=__blank">BBa_K2675093 </a></td> |
<td> pAimX(full-noTerminator-v4) promoter of phage phi3T </td> | <td> pAimX(full-noTerminator-v4) promoter of phage phi3T </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td><a href=" http://parts.igem.org/Part:BBa_K2675094 | + | <td><a href="http://parts.igem.org/Part:BBa_K2675094 " target=__blank">BBa_K2675094 </a></td> |
<td> pAimX(full-noTerminator-v5) promoter of phage phi3T </td> | <td> pAimX(full-noTerminator-v5) promoter of phage phi3T </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td><a href=" http://parts.igem.org/Part:BBa_K2675095 | + | <td><a href="http://parts.igem.org/Part:BBa_K2675095 " target=__blank">BBa_K2675095 </a></td> |
<td> pAimX(full-noTerminator-v6) promoter of phage phi3T </td> | <td> pAimX(full-noTerminator-v6) promoter of phage phi3T </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td><a href=" http://parts.igem.org/Part:BBa_K2675096 | + | <td><a href="http://parts.igem.org/Part:BBa_K2675096 " target=__blank">BBa_K2675096 </a></td> |
<td> pAimX(full-noTerminator-v7) promoter of phage phi3T </td> | <td> pAimX(full-noTerminator-v7) promoter of phage phi3T </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td><a href=" http://parts.igem.org/Part:BBa_K2675097 | + | <td><a href="http://parts.igem.org/Part:BBa_K2675097 " target=__blank">BBa_K2675097 </a></td> |
<td> pAimX(full-noTerminator-v8) promoter of phage phi3T </td> | <td> pAimX(full-noTerminator-v8) promoter of phage phi3T </td> | ||
</tr> | </tr> | ||
| Line 203: | Line 203: | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td><a href=" http://parts.igem.org/Part:BBa_K2675030 | + | <td><a href="http://parts.igem.org/Part:BBa_K2675030 " target=__blank">BBa_K2675030 </a></td> |
<td> L3S2P56 Terminator </td> | <td> L3S2P56 Terminator </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td><a href=" http://parts.igem.org/Part:BBa_K2675031 | + | <td><a href="http://parts.igem.org/Part:BBa_K2675031 " target=__blank">BBa_K2675031 </a></td> |
<td> L3S2P21 Terminator </td> | <td> L3S2P21 Terminator </td> | ||
</tr> | </tr> | ||
| Line 219: | Line 219: | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
| − | <td><a href=" http://parts.igem.org/Part:BBa_K2675070 | + | <td><a href="http://parts.igem.org/Part:BBa_K2675070 " target=__blank">BBa_K2675070 |
<td> Golden Gate adapter </td> | <td> Golden Gate adapter </td> | ||
</tr> | </tr> | ||
Revision as of 10:29, 15 October 2018
PARTS
BASIC PARTS
During this project, our team designed the following basic parts:
Coding sequences
| Part Number | Part Name |
|---|---|
| BBa_K2675000 | AimR-Phi3T |
| BBa_K2675001 | AimP-Phi3T |
| BBa_K2675002 | OmpA-SAIRGA |
| BBa_K2675003 | PelB-SAIRGA |
| BBa_K2675004 | TAT-SAIRGA |
| BBa_K2675005 | sfGFP |
| BBa_K2675006 | sfGFP-LVAtag |
Ribosomal binding sites (RBS)
| Part Number | Part Name |
|---|---|
| BBa_K2675010 | Synthetic RBS designed for AimR of Phi3T |
| BBa_K2675011 | Synthetic RBS designed for AimP of Phi3T |
| BBa_K2675012 | Synthetic RBS designed for OmpA-SAIRGA |
| BBa_K2675013 | Synthetic RBS designed for PelB-SAIRGA |
| BBa_K2675014 | Synthetic RBS designed for TAT-SAIRGA |
| BBa_K2675015 | Synthetic RBS designed for sfGFP |
| BBa_K2675016 | Synthetic RBS designed for sfGFP |
| BBa_K2675017 | Synthetic RBS designed for sfGFP |
Promoters
| Part Number | Part Name |
|---|---|
| BBa_K2675020 | pAimX(full) promoter of phage phi3T |
| BBa_K2675021 | pAimX(short) promoter of phage phi3T |
| BBa_K2675022 | pAimX(short)-J23110 hybrid promoter |
| BBa_K2675023 | pAimX(full-1)-J23110 hybrid promoter |
| BBa_K2675024 | pAimX(full-2)-J23110 hybrid promoter |
| BBa_K2675025 | pAimX(full-3)-J23110 hybrid promoter |
| BBa_K2675026 | J23110 truncated promoter (-10 only) + cloning Scar |
| BBa_K2675090 | pAimX(full-noTerminator-v1) promoter of phage phi3T |
| BBa_K2675091 | pAimX(full-noTerminator-v2) promoter of phage phi3T |
| BBa_K2675092 | pAimX(full-noTerminator-v3) promoter of phage phi3T |
| BBa_K2675093 | pAimX(full-noTerminator-v4) promoter of phage phi3T |
| BBa_K2675094 | pAimX(full-noTerminator-v5) promoter of phage phi3T |
| BBa_K2675095 | pAimX(full-noTerminator-v6) promoter of phage phi3T |
| BBa_K2675096 | pAimX(full-noTerminator-v7) promoter of phage phi3T |
| BBa_K2675097 | pAimX(full-noTerminator-v8) promoter of phage phi3T |
Terminators
| Part Number | Part Name |
|---|---|
| BBa_K2675030 | L3S2P56 Terminator |
| BBa_K2675031 | L3S2P21 Terminator |
and a Golden Gate adapter
| Part Number | Part Name |
|---|---|
| BBa_K2675070 | Golden Gate adapter |
COMPOSITE PARTS
During this project, our team designed the following composite parts:
PART COLLECTION
In our project we tried to repurpose a peptide communication machinery from a phage of the Gram-positive Bacillus subtilis to the cells of Gram-negative Escherichia coli, and quickly discovered that crossing the inter-species barrier in bioengineering is a challenging task. This Part Collection consists of a series of promoter variants designed to debug the mechanism of transcriptional regulation in the aimX promoter that is key to the signalling system. The Collection helped us successfully identify an internal terminator, investigate a potential anti-termination mechanism, and build a hybrid promoter that converts the native transcriptional activator (AimR) into a transcriptional repressor. When placed upstream of a reporter gene, promoters from this Part Collection showed variable transcription strengths and degrees of regulation that provided valuable insights for our project and facilitated the porting of the peptide communication machinery from B. subtilis to E. coli (BBa_K2675050 to K2675065 & BBa_K2675190 to BBa_K2675197).
Part Table
Please include a table of all the parts your team has made during your project on this page. Remember part characterization and measurement data must go on your team part pages on the Registry.
<groupparts>iGEM18 Evry_Paris-Saclay</groupparts>