Difference between revisions of "Team:CSU CHINA/Demonstrate"

 
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<h1>RESULTS</h1>
 
<h1>RESULTS</h1>
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<div class="block main-text main-text" >
  
 
<p>
 
<p>
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<img width="600" depth="600" src="https://static.igem.org/mediawiki/2018/b/bb/T--CSU_CHINA--result1.png" />
 
<img width="600" depth="600" src="https://static.igem.org/mediawiki/2018/b/bb/T--CSU_CHINA--result1.png" />
 
<p>
 
<p>
To assay every part, We use MTT method to test the relative activity of cells[1].
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To assay every part, we plan to use MTT method to test the relative activity of cells[1].
 
</p>
 
</p>
<h2>PROMOTERS</h2>
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<h class="highlight-title dark-blue"></br></br>PROMOTERS</h>
<img src="https://static.igem.org/mediawiki/2018/1/11/T--CSU_CHINA--result2.png"/>
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<p>
 
<p>
Without other components, <br/>
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To check the activation of three promoters CMV, AFP, hTERT, we transfected plasmid pGL4.22-AFP, pGL4.22-hTERT and pGL4.22-CMV into three cell lines (HepG2, Huh7 and Lo2). Through experiments, we conclude that promoters AFP and hTERT are active Huh7 and HepG2, for they belong to HCC, but do not work in human normal hepatocellular, and less effective than CMV. Therefore, we did the cotransfection between pGL4.22-hTERT-GAL4-VP16 and pGL4.35 in these three cell lines.
1. CMV can express in these three cell lines and strongly activate the expression of GAL80, capable of maintaining cell in a high relatively activity. <br/>
+
<br/><br/>
2. AFP and hTERT are active in hepatocellular carcinoma cell lines, HepG2 and Huh7. <br/>
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AFP is invalid in Huh7 cell line(p>0.05), while another two promoters can drive luciferase fluoresces binding with zymolyte
 +
 
 
</p>
 
</p>
<h2>GAL4-VP16</h2>
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<img src="https://static.igem.org/mediawiki/2018/b/bb/T--CSU_CHINA--result3.png"/>
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<center>
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<img src="https://static.igem.org/mediawiki/2018/thumb/c/c8/T--CSU_CHINA--res3.jpg/800px-T--CSU_CHINA--res3.jpg"/>
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<br/>
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<img src="https://static.igem.org/mediawiki/2018/thumb/3/3f/T--CSU_CHINA--res2.jpg/800px-T--CSU_CHINA--res2.jpg"/>
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</center>
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 +
 
 
<p>
 
<p>
After the preliminary try on promoters, we add GAL4-VP16 into the plasmid. We found that, these three promoters show the possibility to make our system effective.<br/>
+
After the preliminary try on promoters, we add GAL4-VP16 into the plasmid. We found that, these three promoters showed the possibility to make our system effective.<br/>
 
According to what we discussed above, we can draw some conclusions here.<br/>
 
According to what we discussed above, we can draw some conclusions here.<br/>
The good news is that CMV promoter and GAL4-VP16 system really have positive effect in those three cell lines while the negative part is that the specificity of our double-switch system with AFP and hTERT is not as high as we expected.<br/>
+
The good news is that CMV promoter and GAL4-VP16 system really have positive effect on those three cell lines while the negative part is that the specificity of our double-switch system with AFP and hTERT is not as high as we expected.<br/>
 
But where does the problem come from? We come up with several proposals:<br/>
 
But where does the problem come from? We come up with several proposals:<br/>
1. Promoter gene code. The Transfection efficiency is not good enough because of unsatisfying cell condition[2]. The culture of these cells is also a big challenge for us. We cloned the code of AFP and hTERT from ATG, maybe with the Upstream noncoding region can make sense.<br/>
+
1. Promoter gene code. The Transfection efficiency is not good enough because of unsatisfying cell condition[2]. The culture of these cells is also a big challenge for us. We cloned the code of AFP and hTERT from ATG, and maybe with the Upstream noncoding region can make sense.<br/>
2. GAL80. Though we are pretty confident in regarding the GAL80 as a good inhibitor to GAL4 protein,but the result is far away from our expectation. We suppose that there are some barriers in the process of expression of GAL80[3]. However, we will try to explore it later!<br/>
+
2. GAL80. Though we are pretty confident in regarding the GAL80 as a good inhibitor to GAL4 protein, but the result is far away from our expectation. We suppose that there are some barriers in the process of expression of GAL80[3]. However, we will try to explore it later!<br/>
  
 
Although we have repeated some steps of our experiments with several times of trial and error, the deficiency of time does not allow us to improve the system adequately.<br/>
 
Although we have repeated some steps of our experiments with several times of trial and error, the deficiency of time does not allow us to improve the system adequately.<br/>
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Apart from what we mentioned above, we also plan to do the following tests:<br/>
 
Apart from what we mentioned above, we also plan to do the following tests:<br/>
  
1. Clone AFP and hTERT code with extra<br/>
+
1. Clone AFP and hTERT code with extra 200bp of noncoding region before ATG.<br/>
200bp of noncoding region before ATG.<br/>
+
 
2. Adjust the transfer condition. For example, maybe in the condition of high cell density, cells will secrete more cytokines, and then hepatocellular carcinoma cells can promote the growth of the cells through paracrine pathways.<br/>
 
2. Adjust the transfer condition. For example, maybe in the condition of high cell density, cells will secrete more cytokines, and then hepatocellular carcinoma cells can promote the growth of the cells through paracrine pathways.<br/>
 
3. Use Tetracycline expression system to substitute GAL80[4].<br/>
 
3. Use Tetracycline expression system to substitute GAL80[4].<br/>
 
4. Do experiment on the remaining part: GAL4 Binding domain (BD) and herpes simlex virus-thymidine kinase (HSV-TK)<br/>
 
4. Do experiment on the remaining part: GAL4 Binding domain (BD) and herpes simlex virus-thymidine kinase (HSV-TK)<br/>
 
</p>
 
</p>
 
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<h class="highlight-title dark-blue"></br></br>CELL LINE</h>
<h2>CELL LINE</h2>
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<h class="bold-text"></br></br>HepG2 Cell Line Characteristics</h>
<h3>HepG2 Cell Line Characteristics</h3>
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<p>
 
<p>
HepG2 is an immortalized cell line consisting of human liver carcinoma cells, derived from the liver tissue of a 15-year-old Caucasian male who had a well-differentiated hepatocellular carcinoma. The morphology of HepG2 cells is epithelial and contains 55 chromosome pairs. HepG2 cells can be grown successfully at a large scale, and secrete many plasma proteins, such as transferrin, fibrinogen, plasminogen and albumin. They can be stimulated with human growth hormone. HepG2 cells are adherent, epithelial-like cells growing as monolayers and in small aggregates[5].
+
HepG2 is an immortalized cell line consisting of human liver carcinoma cells, derived from the liver tissue of a 15-year-old Caucasian male who had a well-differentiated hepatocellular carcinoma. The morphology of HepG2 cells is epithelial and contains 55 chromosome pairs. HepG2 cells can be raised successfully at a large scale, and secrete many plasma proteins, such as transferrin, fibrinogen, plasminogen and albumin. They can be stimulated with human growth hormone. HepG2 cells are adherent, epithelial-like cells growing as monolayers and in small aggregates[5].
 
</p>
 
</p>
<h3>HuH-7 </h3>
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<h class="bold-text">HuH-7</h>
 
<p>
 
<p>
 
HuH-7 is a well differentiated hepatocyte derived cellular carcinoma cell line that was originally taken from a liver tumor in a 57-year-old Japanese male in 1982. HuH-7 cell is HBV negative,and can produce some cytoplasmic proteins, such as albumin, a antitrypsin, AFP, etc[6].
 
HuH-7 is a well differentiated hepatocyte derived cellular carcinoma cell line that was originally taken from a liver tumor in a 57-year-old Japanese male in 1982. HuH-7 cell is HBV negative,and can produce some cytoplasmic proteins, such as albumin, a antitrypsin, AFP, etc[6].
 
</p>
 
</p>
 
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<h class="highlight-title dark-blue"></br></br>Enabling Future iGEM Teams</h>
<h2>Enabling Future iGEM Teams</h2>
+
 
<p>
 
<p>
 
Once we felt that we could understand and control GAL4-VP16, an unusually potent transcriptional activator, we would like to make our system more accessible to future iGEM teams. Although the part we submitted is inherently easy to clone and implement, as it with strong promoter CMV and GAL4-VP16, we would like to make it even more easier to implement. With this thought, we created a construction Bba_K2580666 (CMV-GAL4-VP16) and added them to the registry. This ready-to-clone parts should make it cheaper and easier for future teams to make an innovative synthetic biological tool.
 
Once we felt that we could understand and control GAL4-VP16, an unusually potent transcriptional activator, we would like to make our system more accessible to future iGEM teams. Although the part we submitted is inherently easy to clone and implement, as it with strong promoter CMV and GAL4-VP16, we would like to make it even more easier to implement. With this thought, we created a construction Bba_K2580666 (CMV-GAL4-VP16) and added them to the registry. This ready-to-clone parts should make it cheaper and easier for future teams to make an innovative synthetic biological tool.
 
</p>
 
</p>
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<center>
 
<img src="https://static.igem.org/mediawiki/2018/4/41/T--CSU_CHINA--Project_pri3.png"/>
 
<img src="https://static.igem.org/mediawiki/2018/4/41/T--CSU_CHINA--Project_pri3.png"/>
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</center>
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<h class="highlight-title dark-blue"></br></br>Reference</h>
 
<p>
 
<p>
<hr>
 
<h2>Reference</h2>
 
 
[1] Sladowski D, Steer S J, Clothier R H, et al. An improved MTT assay[J]. J.immunol.methods, 1993, 157(1-2):203.<br/>
 
[1] Sladowski D, Steer S J, Clothier R H, et al. An improved MTT assay[J]. J.immunol.methods, 1993, 157(1-2):203.<br/>
 
[2]Jiang M, Chen G. High Ca2+-phosphate transfection efficiency in low-density neuronal cultures[J]. Nature Protocols, 2006, 1(2):695.<br/>
 
[2]Jiang M, Chen G. High Ca2+-phosphate transfection efficiency in low-density neuronal cultures[J]. Nature Protocols, 2006, 1(2):695.<br/>
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[6]Shih C M, Lo S J, Miyamura T, et al. Suppression of hepatitis B virus expression and replication by hepatitis C virus core protein in HuH-7 cells.[J]. Journal of Virology, 1993, 67(10):5823-5832.<br/>
 
[6]Shih C M, Lo S J, Miyamura T, et al. Suppression of hepatitis B virus expression and replication by hepatitis C virus core protein in HuH-7 cells.[J]. Journal of Virology, 1993, 67(10):5823-5832.<br/>
 
</p>
 
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{{CSU_CHINA/Footer}}

Latest revision as of 03:52, 18 October 2018


RESULTS

First, we designed a sensitive system called hepashield to kill liver cancer cells.

To assay every part, we plan to use MTT method to test the relative activity of cells[1].



PROMOTERS

To check the activation of three promoters CMV, AFP, hTERT, we transfected plasmid pGL4.22-AFP, pGL4.22-hTERT and pGL4.22-CMV into three cell lines (HepG2, Huh7 and Lo2). Through experiments, we conclude that promoters AFP and hTERT are active Huh7 and HepG2, for they belong to HCC, but do not work in human normal hepatocellular, and less effective than CMV. Therefore, we did the cotransfection between pGL4.22-hTERT-GAL4-VP16 and pGL4.35 in these three cell lines.

AFP is invalid in Huh7 cell line(p>0.05), while another two promoters can drive luciferase fluoresces binding with zymolyte


After the preliminary try on promoters, we add GAL4-VP16 into the plasmid. We found that, these three promoters showed the possibility to make our system effective.
According to what we discussed above, we can draw some conclusions here.
The good news is that CMV promoter and GAL4-VP16 system really have positive effect on those three cell lines while the negative part is that the specificity of our double-switch system with AFP and hTERT is not as high as we expected.
But where does the problem come from? We come up with several proposals:
1. Promoter gene code. The Transfection efficiency is not good enough because of unsatisfying cell condition[2]. The culture of these cells is also a big challenge for us. We cloned the code of AFP and hTERT from ATG, and maybe with the Upstream noncoding region can make sense.
2. GAL80. Though we are pretty confident in regarding the GAL80 as a good inhibitor to GAL4 protein, but the result is far away from our expectation. We suppose that there are some barriers in the process of expression of GAL80[3]. However, we will try to explore it later!
Although we have repeated some steps of our experiments with several times of trial and error, the deficiency of time does not allow us to improve the system adequately.
Apart from what we mentioned above, we also plan to do the following tests:
1. Clone AFP and hTERT code with extra 200bp of noncoding region before ATG.
2. Adjust the transfer condition. For example, maybe in the condition of high cell density, cells will secrete more cytokines, and then hepatocellular carcinoma cells can promote the growth of the cells through paracrine pathways.
3. Use Tetracycline expression system to substitute GAL80[4].
4. Do experiment on the remaining part: GAL4 Binding domain (BD) and herpes simlex virus-thymidine kinase (HSV-TK)



CELL LINE


HepG2 Cell Line Characteristics

HepG2 is an immortalized cell line consisting of human liver carcinoma cells, derived from the liver tissue of a 15-year-old Caucasian male who had a well-differentiated hepatocellular carcinoma. The morphology of HepG2 cells is epithelial and contains 55 chromosome pairs. HepG2 cells can be raised successfully at a large scale, and secrete many plasma proteins, such as transferrin, fibrinogen, plasminogen and albumin. They can be stimulated with human growth hormone. HepG2 cells are adherent, epithelial-like cells growing as monolayers and in small aggregates[5].

HuH-7

HuH-7 is a well differentiated hepatocyte derived cellular carcinoma cell line that was originally taken from a liver tumor in a 57-year-old Japanese male in 1982. HuH-7 cell is HBV negative,and can produce some cytoplasmic proteins, such as albumin, a antitrypsin, AFP, etc[6].



Enabling Future iGEM Teams

Once we felt that we could understand and control GAL4-VP16, an unusually potent transcriptional activator, we would like to make our system more accessible to future iGEM teams. Although the part we submitted is inherently easy to clone and implement, as it with strong promoter CMV and GAL4-VP16, we would like to make it even more easier to implement. With this thought, we created a construction Bba_K2580666 (CMV-GAL4-VP16) and added them to the registry. This ready-to-clone parts should make it cheaper and easier for future teams to make an innovative synthetic biological tool.



Reference

[1] Sladowski D, Steer S J, Clothier R H, et al. An improved MTT assay[J]. J.immunol.methods, 1993, 157(1-2):203.
[2]Jiang M, Chen G. High Ca2+-phosphate transfection efficiency in low-density neuronal cultures[J]. Nature Protocols, 2006, 1(2):695.
[3]Leuther K K, Johnston S A. Nondissociation of GAL4 and GAL80 in vivo after galactose induction.[J]. Science, 1992, 256(5061):1333-1335.
[4]Frost H M. Tetracycline-based histological analysis of bone remodeling.[J]. Calcif Tissue Res, 1969, 3(1):211-237.
[5]Cederbaum A I, Wu D, Mari M, et al. CYP2E1-dependent toxicity and oxidative stress in HepG2 cells  ;  , 1, 2[J]. Free Radic Biol Med, 2001, 31(12):1539-1543.
[6]Shih C M, Lo S J, Miyamura T, et al. Suppression of hepatitis B virus expression and replication by hepatitis C virus core protein in HuH-7 cells.[J]. Journal of Virology, 1993, 67(10):5823-5832.