Difference between revisions of "Team:SZU-China"

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<h1>Results</h1>
<div class="view">
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<a href="https://2018.igem.org/Team:SZU-China/Description"><img class="card-img-top" src="https://static.igem.org/mediawiki/2018/d/df/T--SZU-China--home1.png" /> </a>
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<div class="indent">
  
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<p>
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This year, in our project, we constructed a new expression vector working effectively in the fungus and submitted our parts and transforred into <i>Metarhizium anisopliae</i> 128 to increase the adhesion, penetration and immune avoidance capacity of the modified <i>Metarhizium anisopliae</i>. Therefore, we performed experiment on three aspects and the experimental characterizations of our parts are shown as follow.
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</p>
  
<div class="card" style="position:relative">
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<div class="view">
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<div id="Adhesion" class="indent">
<a href="https://2018.igem.org/Team:SZU-China/Design">
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<img class="card-img-top" src="https://static.igem.org/mediawiki/2018/9/94/T--SZU-China--home2.png"> </a>
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<div class="video" style="position:absolute;top:15.98%;left:6.4%">
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<h2>Adhesion:HsbA</h2>
<video width="37.41%" height="62.37%" controls="">
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<p>
<source id="video" src="https://static.igem.org/mediawiki/2018/e/e4/T--SZU-China--description_min.mp4" type="video/mp4">
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In this part, a strong promoter, PgpdA allows the HsbA protein to be expressed without induction.
</video>
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</p>
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<p>The HsbA(
 +
<a href="http://parts.igem.org/Part:BBa_K2788000">BBa_K2788000</a> ) from <i>Beauveria bassiana</i> encodes a kind of membrane surface hydrophobic protein which helps our spores adhere to the wax on the cockroach body surface. Moreover, with the overexpression of HsbA, our spores can more effectively adhere to the cockroach. Then it will follow as spores’ germination, germinal tube, appressorium and the next penetrating process.
 +
</p>
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<p>This part was insert into the expression vector by restriction sites EcoRI and PstI (Fig.1), and the correct construction of this recombinant plasmid was confirmed by PCR identification and sequencing of the PCR products.
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</p>
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<div class="col-6 offset-3">
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<div class="card border-0">
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<img class="card-img-top" src="https://static.igem.org/mediawiki/2018/a/ad/T--SZU-China--Result_1.png" />
 
</div>
 
</div>
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<caption class="text-center"><b>Fig.1</b> Construction of expression vector HsbA-pBC. PgpdA and TtrpC come from parts of 2016_NYMU-Taipei:
 +
<a href="http://parts.igem.org/Part:BBa_K2040101">BBa_K2040101</a>
 +
and
 +
<a href="http://parts.igem.org/Part:BBa_K2040102">BBa_K2040102</a> , and HsbA comes from the <i><i>Beauveria bassiana</i></i> ARSEF 2860. The PgpdA-HsbA-TtrpC part is connected to the pBC plasmid through the BioBrick site.</caption>
  
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</div>
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<p></p>
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<p></p>
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<p>We transformed the expression vectors into <i>Metarhizium anisopliae</i> 128 by the method of Xiaoling Wang, and the positive clone was confirmed by G418 sulfate screening and nucleic acid electrophoresis.
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</p>
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<div class="col-3 offset-4">
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<div class="card border-0">
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<img class="card-img-top" src="https://static.igem.org/mediawiki/2018/f/f2/T--SZU-China--Result_2.jpg" />
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<div class="col-8 offset-2">
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<caption class="text-center"><b>Fig.2</b> 0.8%Agarose Gel Electrophoresis of DNA extracted from the positive clones and its validated by PCR. The product of plasmid digested showed two signal bands at 335 bp and 741bp respectively, which correspond to the length of M.a primer PCR product and HsbA primer PCR product. Lane 1: M.a primer PCR product; Lane 2: HsbA primer PCR product; Lane M: DL marker.
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</caption>
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</div>
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<p></p>
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<p></p>
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<p>The transformed strain <i>Metarhizium anisopliae</i> 128 was grown in 1/4 SDAY liquid medium, and obtain total protein by FastPrep and ultrasonic crushing. The lysate was then centrifuged and the supernate were electrophoresed on a sodium dodecyl sulfate(SDS)-12% (wt/vol) polyacrylamide gel, followed by Coomassie blue staining.(Fig.3)
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</p>
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<div class="col-3 offset-4">
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<div class="card border-0">
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<img class="card-img-top" src="https://static.igem.org/mediawiki/2018/d/da/T--SZU-China--Result_3.jpg" />
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</div>
  
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<div class="card">
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<div class="col-8 offset-2">
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<caption class="text-center"><b>Fig.3</b> SDS-PAGE analysis of membrane protein of wild-type <i>Metarhizium anisopliae</i> 128 and modified <i>Metarhizium anisopliae</i> 128. Lane M: Marker Ladder;Lane 1:<i>Metarhizium anisopliae</i> 128;Lane 2 and 3: recombinant strain <i>Metarhizium anisopliae</i> 128. Lane HsbA1 and HsbA2 showed the same band(in the red box) corresponded with the molecular weight of HsbA(24kDa). </caption>
  
<div class="view">
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</div>
<a href="https://2018.igem.org/Team:SZU-China/Model"><img class="card-img-top" src="https://static.igem.org/mediawiki/2018/b/ba/T--SZU-China--home3.png" /> </a>
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<p>
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Besides, by using the method of compared four areas of each wing in the scanning electron microscope before and after treatment which is ‘put the petri dishes on WD-9405B horizontal shaking table and opened the lowest rolling speed for 10min (to make the spores on the wings evenly impacted by the water flow)’ in the
 +
<b>HsbA macro verification protocol</b>, we can finally compared whether there was any change in the position and number of spores in the observing area. (illustrated with Fig.4 and Fig.5)
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</p>
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</div>
  
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<div class="col-8 offset-2">
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<img class="card-img-top" src="https://static.igem.org/mediawiki/2018/5/5f/T--SZU-China--Result_4.png" />
<div class="view">
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</div>
<a href="https://2018.igem.org/Team:SZU-China/Model"><img class="card-img-top" src="https://static.igem.org/mediawiki/2018/9/93/T--SZU-China--home4.png" /> </a>
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<caption class="text-center"><b>Fig.4</b> One of the wild-type <i>Metarhizium anisopliae</i> 128 groups: P1 is the picture before treated and P2 is the picture after treated. The spores quantity is 40 in P1 and 102 in P2. And there are only two left that have not been washed away and moved. The adherence rate is 2/40=5.0%
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<div class="view">
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<a href="https://2018.igem.org/Team:SZU-China/Human_Practices"><img class="card-img-top" src="https://static.igem.org/mediawiki/2018/4/4c/T--SZU-China--home5.png" /> </a>
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<div class="view">
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<a href="https://2018.igem.org/Team:SZU-China/Applet"><img class="card-img-top" src="https://static.igem.org/mediawiki/2018/0/02/T--SZU-China--home6.png" /> </a>
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</caption>
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<div class="card">
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<div class="view">
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<a href="#"><img class="card-img-top" src="https://static.igem.org/mediawiki/2018/7/76/T--SZU-China--home7.png" /> </a>
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<p></p>
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<p></p>
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<p>
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It’s obvious that it happens great change(circle in red)in the position and number of spores in the observing area of wild-type <i>Metarhizium anisopliae</i> 128 experimental groups.
  
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</p>
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<div class="col-8 offset-2">
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<div class="card border-0">
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<img class="card-img-top" src="https://static.igem.org/mediawiki/2018/2/23/T--SZU-China--Result_5.png" />
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</div>
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<caption class="text-center"><b>Fig.5</b> One of the <i>Metarhizium anisopliae</i> HsbA transformant groups: P3 is the picture before treated and P4 is the picture after treated. The spores quantity is 42 in P3 and 52 in P4. And there are 41 spores left that have not been washed away and moved. The adherence rate is 41/42=97.6%
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</caption>
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</div>
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<p></p>
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<p></p>
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<p>
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It’s obvious that it almost happens no change except the place circled in red in the position and number of spores in the observing area of <i>Metarhizium anisopliae</i> HsbA transformant experimental groups.
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</p>
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<p>
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Finally, the following chart (Fig.6) can be obtained by statistical data of four areas in all experimental groups.
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</p>
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<div class="col-6 offset-3">
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<div class="card">
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<img class="card-img-top" src="https://static.igem.org/mediawiki/2018/e/e3/T--SZU-China--Result_12.jpg" />
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</div>
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<caption class="text-center"><b>Fig.6</b> M.a128 is the wild-type <i>Metarhizium anisopliae</i> 128 groups, and the adherence rate in average is 26.7%. HsbA is the <i>Metarhizium anisopliae</i> 128 HsbA transformant groups, and the adherence rate in average is 97.7%.
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</caption>
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</div>
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<p></p>
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<p></p>
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<p>
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In conclusion, this result well confirmed that <i>Metarhizium anisopliae</i> HsbA transformant certainly enhanced the capacity of adhesion.
  
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</p>
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<div id="Penetration" class="indent">
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<h2>Penetration: Bbchit</h2>
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<p>In order to make <i>Metarhizium anisopliae</i> penetrate the corpus callosum more efficiently, we transferred Bbchit(
 +
<a href="http://parts.igem.org/Part:BBa_K2788001">BBa_K2788001</a> ), a chitinase gene from <i><i>Beauveria bassiana</i></i> ARSEF 2860, which encodes a chitinase that can be secreted extracellularly. The chitin of the body surface decomposes, thereby destroying the wall of the corpus callosum, so that the genus Metarhizium enters the sputum.(Fig.7)
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</p>
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<div class="col-6 offset-3">
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<div class="card border-0">
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<img class="card-img-top" src="https://static.igem.org/mediawiki/2018/e/e9/T--SZU-China--Result_6.png" />
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</div>
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<caption class="text-center"><b>Fig.7</b> Construction of expression vector Bbchit-pBC. PgpdA and TtrpC come from parts of 2016_NYMU-Taipei:
 +
<a href="http://parts.igem.org/Part:BBa_K2040101">BBa_K2040101</a> and
 +
<a href="http://parts.igem.org/Part:BBa_K2040102">BBa_K2040102</a>, and Bbchit comes from the <i>Beauveria bassiana</i> ARSEF 2860. The PgpdA-Bbchit-TtrpC part is connected to the pBC plasmid through the BioBrick site.
 +
</caption>
 +
</div>
 +
<p></p>
 +
<p></p>
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<p>We have a part encoding Chitinase, the Bbchit express and function intracellularly. We constructed a shuttle vector to transform this part and the positive clone was confirmed by G418 sulfate screening and nucleic acid electrophoresis.(Fig.8)
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</p>
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<div class="col-3 offset-4">
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<div class="card border-0">
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<img class="card-img-top" src="https://static.igem.org/mediawiki/2018/6/6d/T--SZU-China--Result_7.jpg" />
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</div>
  
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<caption class="text-center"><b>Fig.8</b> 0.8%Agarose Gel Electrophoresis of DNA extracted from the positive clones and its identification by restriction digestion. The product of plasmid digested showed two signal bands at 335bp and 1044bp respectively, which correspond to the length of M.a primer PCR product and Bbchit primer PCR product. Lane 1: M.a primer PCR product; Lane 2: Bbchit primer PCR product; Lane M: DL marker.
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<p>The crude enzyme solution was obtained by cell disruption using ultrasonic, followed by SDS-PAGE protein electrophoresis and Coomassie blue staining.(Fig.9)
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</p>
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<div class="col-3 offset-4">
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<div class="card border-0">
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<img class="card-img-top" src="https://static.igem.org/mediawiki/2018/6/61/T--SZU-China--Result_8.jpg" />
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</div>
  
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<caption class="text-center"><b>Fig.9</b> SDS-PAGE analysis of membrane protein of wild-type <i>Metarhizium anisopliae</i> 128 and modified <i>Metarhizium anisopliae</i> 128. Lane M: Marker Ladder;Lane 1:<i>Metarhizium anisopliae</i> 128;Lane 2: recombinant strain <i>Metarhizium anisopliae</i> 128. Lane 2 showed the band(in the red box) corresponded with the molecular weight of Bbchit(38kDa).</caption>
          <img src="https://static.igem.org/mediawiki/2017/0/08/2017SZUChina-sponsor1.jpg" class="img-fluid" alt="">
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To determine the activity of chitinase, we improved it according to the DNS colorimetric method of Kan Zhuo, Xiaozhen Shi. First, the standard curve was drawn with different concentration gradients of glucose solution, and 0.5 ml of the wild-type and transformed type 1, 3, 5, 7, 9 and 10 days of culture solution were respectively taken for enzyme activity test: the crude enzyme obtained after filtering the culture solution was used. The solution was mixed with 0.5 ml of 1% chitin colloid, reacted at 37 ° C for 60 min, and then added to a 0.5 ml DNS boiling water bath for 10 min. The absorbance of the obtained product was measured and the enzyme activity was calculated. There were three groups of wild-type and transformed type. Parallel, three parallel experiments were performed in each group, and the final data were averaged.
 +
</p>
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<p>We calculate activity based on the standard curve formula: U=(A540+0.03279)/2.202 (Fig.10), a summary of the data at different times is made into a line chart as follows.We can see that after 12 days the transformed type’s enzyme activity is still growing and the wild-type is falling.(Fig. 11)
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</p>
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<div class="row">
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<div class="col-5 offset-1">
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<div class="card h-100">
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<img class="card-img-top" src="https://static.igem.org/mediawiki/2018/e/ec/T--SZU-China--Result_9.jpg" />
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</div>
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<caption class="text-center"><b>Fig.10</b> Glucose standard curve</caption>
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<div class="col-5 offset-1">
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<div class="card h-100 ">
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<img class="card-img-top" src="https://static.igem.org/mediawiki/2018/c/c9/T--SZU-China--Result_10.png" />
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<caption class="text-center"><b>Fig.11</b> changes in chitinase activity over time.</caption>
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</div>
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<p>In order to verify the function of Bbchit from a macro level, we improved Kan Zhuo's chitin transparent circle method for verification. We stained the czapek solid medium without chitin colloids in red with 0.1% Congo red dye solution and then cultured wild-type and transformed Metarhizium. Compared with the size of the colony, the size of the transparent circle was compared to obtain the transformed type. The size of the transparent circle is the diameter of the chitin transparent ring (R2) and colonies. The ratio of the diameter (R1), expressed as R2/R1.The conclusion that the chitinase activity of <i>Metarhizium anisopliae</i> is enhanced.
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<img class="card-img-top" src="https://static.igem.org/mediawiki/2018/1/1d/T--SZU-China--Result_11.png" />
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<caption class="text-center">
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<b>Fig.12</b> A: wild-type <i>Metarhizium anisopliae</i> 128 produced transparent zone on Czapek chitin - induced medium; R1: 8mm, R2: 9mm; R2/R1=9/8 B: <i>Metarhizium anisopliae</i> HsbA transformant produced transparent zone on Czapek chitin - induced medium; R1’: 8mm, R2’: 12mm; R2’/R1’=12/8=3/2
  
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<p>Therefore, these results well confirmed that the chitinase activity of <i>Metarhizium anisopliae</i> Bbchit transformant is about 1.3 times that of wild-type <i>Metarhizium anisopliae</i> 128. Our modified fungus certainly enhanced the capacity of penetration.
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<h2>Immune avoidance: MCL1</h2>
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<a class="nav-link" href="#Adhesion">Adhesion: HsbA</a>
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<a class="nav-link" href="#Penetration">Penetration: Bbchit</a>
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<a class="nav-link" href="#Immune_avoidance">Immune avoidance: MCL1</a>
  
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Revision as of 00:56, 16 October 2018

Results

This year, in our project, we constructed a new expression vector working effectively in the fungus and submitted our parts and transforred into Metarhizium anisopliae 128 to increase the adhesion, penetration and immune avoidance capacity of the modified Metarhizium anisopliae. Therefore, we performed experiment on three aspects and the experimental characterizations of our parts are shown as follow.

Adhesion:HsbA

In this part, a strong promoter, PgpdA allows the HsbA protein to be expressed without induction.

The HsbA( BBa_K2788000 ) from Beauveria bassiana encodes a kind of membrane surface hydrophobic protein which helps our spores adhere to the wax on the cockroach body surface. Moreover, with the overexpression of HsbA, our spores can more effectively adhere to the cockroach. Then it will follow as spores’ germination, germinal tube, appressorium and the next penetrating process.

This part was insert into the expression vector by restriction sites EcoRI and PstI (Fig.1), and the correct construction of this recombinant plasmid was confirmed by PCR identification and sequencing of the PCR products.

Fig.1 Construction of expression vector HsbA-pBC. PgpdA and TtrpC come from parts of 2016_NYMU-Taipei: BBa_K2040101 and BBa_K2040102 , and HsbA comes from the Beauveria bassiana ARSEF 2860. The PgpdA-HsbA-TtrpC part is connected to the pBC plasmid through the BioBrick site.

We transformed the expression vectors into Metarhizium anisopliae 128 by the method of Xiaoling Wang, and the positive clone was confirmed by G418 sulfate screening and nucleic acid electrophoresis.

Fig.2 0.8%Agarose Gel Electrophoresis of DNA extracted from the positive clones and its validated by PCR. The product of plasmid digested showed two signal bands at 335 bp and 741bp respectively, which correspond to the length of M.a primer PCR product and HsbA primer PCR product. Lane 1: M.a primer PCR product; Lane 2: HsbA primer PCR product; Lane M: DL marker.

The transformed strain Metarhizium anisopliae 128 was grown in 1/4 SDAY liquid medium, and obtain total protein by FastPrep and ultrasonic crushing. The lysate was then centrifuged and the supernate were electrophoresed on a sodium dodecyl sulfate(SDS)-12% (wt/vol) polyacrylamide gel, followed by Coomassie blue staining.(Fig.3)

Fig.3 SDS-PAGE analysis of membrane protein of wild-type Metarhizium anisopliae 128 and modified Metarhizium anisopliae 128. Lane M: Marker Ladder;Lane 1:Metarhizium anisopliae 128;Lane 2 and 3: recombinant strain Metarhizium anisopliae 128. Lane HsbA1 and HsbA2 showed the same band(in the red box) corresponded with the molecular weight of HsbA(24kDa).

Besides, by using the method of compared four areas of each wing in the scanning electron microscope before and after treatment which is ‘put the petri dishes on WD-9405B horizontal shaking table and opened the lowest rolling speed for 10min (to make the spores on the wings evenly impacted by the water flow)’ in the HsbA macro verification protocol, we can finally compared whether there was any change in the position and number of spores in the observing area. (illustrated with Fig.4 and Fig.5)

Fig.4 One of the wild-type Metarhizium anisopliae 128 groups: P1 is the picture before treated and P2 is the picture after treated. The spores quantity is 40 in P1 and 102 in P2. And there are only two left that have not been washed away and moved. The adherence rate is 2/40=5.0%

It’s obvious that it happens great change(circle in red)in the position and number of spores in the observing area of wild-type Metarhizium anisopliae 128 experimental groups.

Fig.5 One of the Metarhizium anisopliae HsbA transformant groups: P3 is the picture before treated and P4 is the picture after treated. The spores quantity is 42 in P3 and 52 in P4. And there are 41 spores left that have not been washed away and moved. The adherence rate is 41/42=97.6%

It’s obvious that it almost happens no change except the place circled in red in the position and number of spores in the observing area of Metarhizium anisopliae HsbA transformant experimental groups.

Finally, the following chart (Fig.6) can be obtained by statistical data of four areas in all experimental groups.

Fig.6 M.a128 is the wild-type Metarhizium anisopliae 128 groups, and the adherence rate in average is 26.7%. HsbA is the Metarhizium anisopliae 128 HsbA transformant groups, and the adherence rate in average is 97.7%.

In conclusion, this result well confirmed that Metarhizium anisopliae HsbA transformant certainly enhanced the capacity of adhesion.

Penetration: Bbchit

In order to make Metarhizium anisopliae penetrate the corpus callosum more efficiently, we transferred Bbchit( BBa_K2788001 ), a chitinase gene from Beauveria bassiana ARSEF 2860, which encodes a chitinase that can be secreted extracellularly. The chitin of the body surface decomposes, thereby destroying the wall of the corpus callosum, so that the genus Metarhizium enters the sputum.(Fig.7)

Fig.7 Construction of expression vector Bbchit-pBC. PgpdA and TtrpC come from parts of 2016_NYMU-Taipei: BBa_K2040101 and BBa_K2040102, and Bbchit comes from the Beauveria bassiana ARSEF 2860. The PgpdA-Bbchit-TtrpC part is connected to the pBC plasmid through the BioBrick site.

We have a part encoding Chitinase, the Bbchit express and function intracellularly. We constructed a shuttle vector to transform this part and the positive clone was confirmed by G418 sulfate screening and nucleic acid electrophoresis.(Fig.8)

Fig.8 0.8%Agarose Gel Electrophoresis of DNA extracted from the positive clones and its identification by restriction digestion. The product of plasmid digested showed two signal bands at 335bp and 1044bp respectively, which correspond to the length of M.a primer PCR product and Bbchit primer PCR product. Lane 1: M.a primer PCR product; Lane 2: Bbchit primer PCR product; Lane M: DL marker.

The crude enzyme solution was obtained by cell disruption using ultrasonic, followed by SDS-PAGE protein electrophoresis and Coomassie blue staining.(Fig.9)

Fig.9 SDS-PAGE analysis of membrane protein of wild-type Metarhizium anisopliae 128 and modified Metarhizium anisopliae 128. Lane M: Marker Ladder;Lane 1:Metarhizium anisopliae 128;Lane 2: recombinant strain Metarhizium anisopliae 128. Lane 2 showed the band(in the red box) corresponded with the molecular weight of Bbchit(38kDa).

To determine the activity of chitinase, we improved it according to the DNS colorimetric method of Kan Zhuo, Xiaozhen Shi. First, the standard curve was drawn with different concentration gradients of glucose solution, and 0.5 ml of the wild-type and transformed type 1, 3, 5, 7, 9 and 10 days of culture solution were respectively taken for enzyme activity test: the crude enzyme obtained after filtering the culture solution was used. The solution was mixed with 0.5 ml of 1% chitin colloid, reacted at 37 ° C for 60 min, and then added to a 0.5 ml DNS boiling water bath for 10 min. The absorbance of the obtained product was measured and the enzyme activity was calculated. There were three groups of wild-type and transformed type. Parallel, three parallel experiments were performed in each group, and the final data were averaged.

We calculate activity based on the standard curve formula: U=(A540+0.03279)/2.202 (Fig.10), a summary of the data at different times is made into a line chart as follows.We can see that after 12 days the transformed type’s enzyme activity is still growing and the wild-type is falling.(Fig. 11)

Fig.10 Glucose standard curve
Fig.11 changes in chitinase activity over time.

In order to verify the function of Bbchit from a macro level, we improved Kan Zhuo's chitin transparent circle method for verification. We stained the czapek solid medium without chitin colloids in red with 0.1% Congo red dye solution and then cultured wild-type and transformed Metarhizium. Compared with the size of the colony, the size of the transparent circle was compared to obtain the transformed type. The size of the transparent circle is the diameter of the chitin transparent ring (R2) and colonies. The ratio of the diameter (R1), expressed as R2/R1.The conclusion that the chitinase activity of Metarhizium anisopliae is enhanced.

Fig.12 A: wild-type Metarhizium anisopliae 128 produced transparent zone on Czapek chitin - induced medium; R1: 8mm, R2: 9mm; R2/R1=9/8 B: Metarhizium anisopliae HsbA transformant produced transparent zone on Czapek chitin - induced medium; R1’: 8mm, R2’: 12mm; R2’/R1’=12/8=3/2

Therefore, these results well confirmed that the chitinase activity of Metarhizium anisopliae Bbchit transformant is about 1.3 times that of wild-type Metarhizium anisopliae 128. Our modified fungus certainly enhanced the capacity of penetration.

Immune avoidance: MCL1