Difference between revisions of "Team:NYMU-Taipei/Improve"
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<h2 id="1" class="subtitle">Overview</h2> | <h2 id="1" class="subtitle">Overview</h2> | ||
| − | <p>Fluorescent proteins are widely used as reporters. Enhanced Green Fluorescent Protein (EGFP) is a fluorescent protein widely used | + | <p>Fluorescent proteins are widely used as reporters. Enhanced Green Fluorescent Protein (EGFP) is a fluorescent protein widely used for this purpose. In our project, we improved EGFP into monomer EGFP (mEGFP). Also, we added an albumin secretion peptide (ALB) to our fluorescent protein to enable more convenient observation of the fluorescent protein.</p> |
</div> | </div> | ||
</div> | </div> | ||
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<div class="paragraphs"> | <div class="paragraphs"> | ||
<h2 id="2" class="subtitle">mEGFP</h2> | <h2 id="2" class="subtitle">mEGFP</h2> | ||
| − | <p>EGFP has been documented by team Lambert in 2016. However, EGFP molecules have a tendency to noncovalently dimerize. As reporter fluorescent proteins are often fused to protein of interest, one of the main applications of fluorescent proteins include visualizing the localization and behaviors of target . However, dimerization of proteins can cause problems such as disturbing with the inert of target. Another common problem is showing false positive results when used for FRET. In order to minimize these issues that might interfere with our detection results | + | <p>EGFP has been documented by team Lambert in 2016. However, EGFP molecules have a tendency to noncovalently dimerize. As reporter fluorescent proteins are often fused to protein of interest, one of the main applications of fluorescent proteins include visualizing the localization and behaviors of target [1]. However, dimerization of proteins can cause problems such as disturbing with the inert of target. Another common problem is showing false positive results when used for FRET. In order to minimize these issues that might interfere with our detection results, we designed a monomer EGPF (mEGFP) that does not naturally dimerize. This is done by altering one amino acid in the original EGFP protein. The sequencing data is shown below. </p> |
| − | <img src=""> | + | <img src="https://static.igem.org/mediawiki/2018/8/87/T--NYMU-Taipei--parts-mEGFPsequencing.png" style="width:500px;"> |
<p>This difference in the sequence results in very different Van-Der-Waals forces between molecules, decreasing the tendency of EGFP molecules to dimerize. To verify our prediction, we used SWISS-MODEL, an online protein modeling system to check the predicted structure of our mEGFP. We modeled the structure of both EGFP and mEGFP. The predicted oligio-state of EGFP molecule is homo-dimer, while mEGFP is likely to be a monomer. The modeled structure is shown in Table below. </p> | <p>This difference in the sequence results in very different Van-Der-Waals forces between molecules, decreasing the tendency of EGFP molecules to dimerize. To verify our prediction, we used SWISS-MODEL, an online protein modeling system to check the predicted structure of our mEGFP. We modeled the structure of both EGFP and mEGFP. The predicted oligio-state of EGFP molecule is homo-dimer, while mEGFP is likely to be a monomer. The modeled structure is shown in Table below. </p> | ||
| − | <table> | + | <style> |
| + | table, th, td { | ||
| + | border: 1px solid black; | ||
| + | border-collapse: collapse; | ||
| + | } | ||
| + | </style> | ||
| + | |||
| + | <table style="width:70%"> | ||
| + | <tr> | ||
| + | <th></th> | ||
| + | <th>EGFP</th> | ||
| + | <th>mEGFP</th> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>Structure Model</td> | ||
| + | <td><img src="https://static.igem.org/mediawiki/parts/4/40/T--NYMU-Taipei--part-mEGFP3.jpg" style="width:200px;"></td> | ||
| + | <td><img src="https://static.igem.org/mediawiki/parts/c/c0/T--NYMU-Taipei--part-mEGFP4.jpg" style="width:200px;"></td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>Predicted Oligio-state </td> | ||
| + | <td>Homo-dimer</td> | ||
| + | <td>Monomer</td> | ||
| + | </tr> | ||
</table> | </table> | ||
| − | <p>We transfected a plasmid containing the mEGFP sequence into HEK 293T cell line, and green | + | <p>We transfected a plasmid containing the mEGFP sequence into HEK 293T cell line, and green fluorescence can be detected under confocal microscope (As shown below). This proves that our improvement of EGFP does not interfere with its ability to emit fluorescence, making mEGFP a better version of the reporter protein. </p> |
| − | <img src=""> | + | <img src="https://static.igem.org/mediawiki/2018/e/ee/T--NYMU-Taipei--improve-confocol.png" style="width:300px;"> |
</div> | </div> | ||
</div> | </div> | ||
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<div class="story section"> | <div class="story section"> | ||
| − | <div class="paragraphs"> | + | <div class="paragraphs" id="albmcherry"> |
| − | <h2 id="3" class="subtitle">ALB secretion peptide</h2> | + | <h2 id="3" class="subtitle" >ALB secretion peptide</h2> |
| − | <p>Albumin secretion peptide (ALB) has been proved to be able to help proteins fused to ALB secrete extracellularly . Traditionally, fluorescence has to be observed under fluorescent microscopes. However, with our ALB fused to the fluorescent protein, fluorescent protein is allowed to be secreted and detected extracellularly. We improved both EGFP and mCherry by fusing both fluorescent proteins to ALB to enable convenient detection of protein concentration via a plate reader. This helped with our project a lot this year, as the amount of fluorescent protein secreted under the control of both CMV and DKK1 promoters can be detected quickly and conveniently. </p> | + | <p>Albumin secretion peptide (ALB) has been proved to be able to help proteins fused to ALB secrete extracellularly [2]. Traditionally, fluorescence has to be observed under fluorescent microscopes. However, with our ALB fused to the fluorescent protein, fluorescent protein is allowed to be secreted and detected extracellularly. We improved both EGFP and mCherry by fusing both fluorescent proteins to ALB to enable convenient detection of protein concentration via a spectrophotometer plate reader. This helped with our project a lot this year, as the amount of fluorescent protein secreted under the control of both CMV and DKK1 promoters can be detected quickly and conveniently. </p> |
<p>To evaluate whether or not our improved part works, we transfected two 6cm plate of 293T cells: one with ALB-mCherry, and one with ALB-mEGFP. Cell supernatant was collected and RFU values were measured with corresponding wavelengths after 24 hours and 48 hours. Cultured cell control was collected from cells that have not been transfected with the plasmids. Figure 3 and Figure 4 show promising confirmation that ALB tagged fluorescence proteins have been secreted extracellularly. </p> | <p>To evaluate whether or not our improved part works, we transfected two 6cm plate of 293T cells: one with ALB-mCherry, and one with ALB-mEGFP. Cell supernatant was collected and RFU values were measured with corresponding wavelengths after 24 hours and 48 hours. Cultured cell control was collected from cells that have not been transfected with the plasmids. Figure 3 and Figure 4 show promising confirmation that ALB tagged fluorescence proteins have been secreted extracellularly. </p> | ||
| − | <img src=""> | + | <img src="https://static.igem.org/mediawiki/2018/7/7b/T--NYMU-Taipei--improve-figure3.png"> |
| − | <img src=""> | + | <img src="https://static.igem.org/mediawiki/2018/e/e2/T--NYMU-Taipei--improve-figure4.png"> |
</div> | </div> | ||
</div> | </div> | ||
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<h2 id="4" class="subtitle">Reference</h2> | <h2 id="4" class="subtitle">Reference</h2> | ||
<ol> | <ol> | ||
| − | <li> | + | <li>Blogger, G. When is a Monomer not a Monomer? The Top Three Ways Your Favorite Fluorescent Protein Oligomerizes in Cells. (Apr 19, 2016) From https://blog.addgene.org/when-is-a-monomer-not-a-monomer-the-top-three-ways-your-favorite-fluorescent-protein-oligomerizes-in-cells</li> |
| − | + | <li>Attallah, C., Etcheverrigaray, M., Kratje, R., & Oggero, M. A highly efficient modified human serum albumin signal peptide to secrete proteins in cells derived from different mammalian species. Protein Expression and Purification, 2017, 132, 27-33.</li> | |
| − | + | ||
| − | + | ||
| − | <li></li> | + | |
</ol> | </ol> | ||
</div> | </div> | ||
</div> | </div> | ||
Latest revision as of 01:43, 18 October 2018
Overview
Fluorescent proteins are widely used as reporters. Enhanced Green Fluorescent Protein (EGFP) is a fluorescent protein widely used for this purpose. In our project, we improved EGFP into monomer EGFP (mEGFP). Also, we added an albumin secretion peptide (ALB) to our fluorescent protein to enable more convenient observation of the fluorescent protein.
mEGFP
EGFP has been documented by team Lambert in 2016. However, EGFP molecules have a tendency to noncovalently dimerize. As reporter fluorescent proteins are often fused to protein of interest, one of the main applications of fluorescent proteins include visualizing the localization and behaviors of target [1]. However, dimerization of proteins can cause problems such as disturbing with the inert of target. Another common problem is showing false positive results when used for FRET. In order to minimize these issues that might interfere with our detection results, we designed a monomer EGPF (mEGFP) that does not naturally dimerize. This is done by altering one amino acid in the original EGFP protein. The sequencing data is shown below.
This difference in the sequence results in very different Van-Der-Waals forces between molecules, decreasing the tendency of EGFP molecules to dimerize. To verify our prediction, we used SWISS-MODEL, an online protein modeling system to check the predicted structure of our mEGFP. We modeled the structure of both EGFP and mEGFP. The predicted oligio-state of EGFP molecule is homo-dimer, while mEGFP is likely to be a monomer. The modeled structure is shown in Table below.
| EGFP | mEGFP | |
|---|---|---|
| Structure Model |  |
 |
| Predicted Oligio-state | Homo-dimer | Monomer |
We transfected a plasmid containing the mEGFP sequence into HEK 293T cell line, and green fluorescence can be detected under confocal microscope (As shown below). This proves that our improvement of EGFP does not interfere with its ability to emit fluorescence, making mEGFP a better version of the reporter protein.
ALB secretion peptide
Albumin secretion peptide (ALB) has been proved to be able to help proteins fused to ALB secrete extracellularly [2]. Traditionally, fluorescence has to be observed under fluorescent microscopes. However, with our ALB fused to the fluorescent protein, fluorescent protein is allowed to be secreted and detected extracellularly. We improved both EGFP and mCherry by fusing both fluorescent proteins to ALB to enable convenient detection of protein concentration via a spectrophotometer plate reader. This helped with our project a lot this year, as the amount of fluorescent protein secreted under the control of both CMV and DKK1 promoters can be detected quickly and conveniently.
To evaluate whether or not our improved part works, we transfected two 6cm plate of 293T cells: one with ALB-mCherry, and one with ALB-mEGFP. Cell supernatant was collected and RFU values were measured with corresponding wavelengths after 24 hours and 48 hours. Cultured cell control was collected from cells that have not been transfected with the plasmids. Figure 3 and Figure 4 show promising confirmation that ALB tagged fluorescence proteins have been secreted extracellularly.
Reference
- Blogger, G. When is a Monomer not a Monomer? The Top Three Ways Your Favorite Fluorescent Protein Oligomerizes in Cells. (Apr 19, 2016) From https://blog.addgene.org/when-is-a-monomer-not-a-monomer-the-top-three-ways-your-favorite-fluorescent-protein-oligomerizes-in-cells
- Attallah, C., Etcheverrigaray, M., Kratje, R., & Oggero, M. A highly efficient modified human serum albumin signal peptide to secrete proteins in cells derived from different mammalian species. Protein Expression and Purification, 2017, 132, 27-33.