Difference between revisions of "Team:NTHU Formosa/Nanobody"

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     <br>
     <h2 class="w3-center" style="font-size:60px;"><b>Nanobody</b></h2>
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        <h2 class="w3-center" style="font-size:45px;font-family:Quicksand;"><b>Nanobody</b></h2><br>
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  Nanobodies are single variable domain antibody fragments (VHH) derived from heavy-chain only antibodies discovered and identified in at least two types of organisms, camelidae (e.g., camel and llama) and cartilaginous fish (e.g., nurse shark and Wobbegong).<br><br>
  
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      <br>TEV proteases are the 27kDa catalytic domains of the NIa (Nuclear Inclusion a) protein encoded by Tobacco Etch Virus (TEV), where TEV proteases cut polyproteins into single proteins during biogenesis. TEV proteases recognize a linear epitope of the general form E-Xaa-Xaa-Y-Xaa-Q-(G/S) and cut the linkage between Q and G/S (Xaa can be freely substituted because variability in these positions was found in the natural cleavage sites of TEV’s polyprotein). Comparison of cleavage efficiency of different substract sequences demonstrated that “ENLYFQS” is the most efficient substrate sequence. The high-specificity of TEV’s cleavage makes it a popular tool for direct expression in living cells and protein purification.</p><br><br>
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  The molecular size of nanobody is about 3 nm (15kDa), 1/10000 of hair diameter. Such property earned it the name, nanobody. They are more hydrophilic than conventional antibodies. They withstand big pH variation. Their small size gives them the ability to penetrate the tissue faster and to reach deeper into the binding pockets of enzymes. Being able to refold after heat denaturation keeps nanobodies functional and active at 70°C or 2-hour 90°C heat shock.<br><br>
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  Nanobodies retain full antigen binding capacity and are considerably stable. Conventional antibodies are composed with variable domains along with heavy chains and light chains. When binding with proteins, all three parts of them are necessarily involved. Hence, nanobodies’ comparably simple structure greatly increases their antigen binding affinity. What’s even better is that it’s less costly to make nanobodies than antibodies. According to the information from iCAN database (<a href="http://ican.ils.seu.edu.cn">Institute collection and Analysis of Nanobody</a>),
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        over two thousand nanobodies are available for recognizing different antigens including molecular-bound molecules and soluble molecules.<br><br>
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  Compared with antibodies, the unique features that nanobodies possess make them ideal for therapeutic and bioengineering tools. As a result, nanobodies are applied in our mechanism.</p><br><br>
 
      
 
      
   
 
   
 
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          <th><font face="Quicksand"size="3px">Name</font></th>
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          <th><font face="Quicksand"size="3px">Conventional antibody</font></th>
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          <th><font face="Quicksand"size="3px">Nanobody</font></th>
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          <td><font face="Quicksand"size="3px">Size</font></td>
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          <td><font face="Quicksand"size="3px">150–160 kDa</font></td>
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          <td><font face="Quicksand"size="3px">12-15 kDa</font></td>
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          <td><font face="Quicksand"size="3px">Composition</font></td>
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          <td><font face="Quicksand"size="3px">Variable domains + Heavy chains + Light chains</font></td>
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          <td><font face="Quicksand"size="3px">Variable domain fragments</font></td>
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        </tr>
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          <td><font face="Quicksand"size="3px">Structure (incomparison)</font></td>
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          <td><font face="Quicksand"size="3px">Complex</font></td>
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          <td><font face="Quicksand"size="3px">Simple</font></td>
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          <td><font face="Quicksand"size="3px">Antigen binding affinity</font></td>
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          <td><font face="Quicksand"size="3px">High</font></td>
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          <td><font face="Quicksand"size="3px">Even better (nano-to-picomolar affinities)</font></td>
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          <td><font face="Quicksand"size="3px">Thermal Stability</font></td>
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          <td><font face="Quicksand"size="3px">65°C for 20 mins diminishes the activities of almost all antibodies</font></td>
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          <td><font face="Quicksand"size="3px">Highly heat-resistant <br>(functional and active at 70°C or even at 2-hour 90°C heat shock)</font></td>
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        </tr>
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          <td><font face="Quicksand"size="3px">Price</font></td>
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          <td><font face="Quicksand"size="3px">Varies with the products</font></td>
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          <td><font face="Quicksand"size="3px">Less expensive than antibodies</font></td>
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Latest revision as of 02:12, 18 October 2018




Nanobody


  Nanobodies are single variable domain antibody fragments (VHH) derived from heavy-chain only antibodies discovered and identified in at least two types of organisms, camelidae (e.g., camel and llama) and cartilaginous fish (e.g., nurse shark and Wobbegong).

  The molecular size of nanobody is about 3 nm (15kDa), 1/10000 of hair diameter. Such property earned it the name, nanobody. They are more hydrophilic than conventional antibodies. They withstand big pH variation. Their small size gives them the ability to penetrate the tissue faster and to reach deeper into the binding pockets of enzymes. Being able to refold after heat denaturation keeps nanobodies functional and active at 70°C or 2-hour 90°C heat shock.

  Nanobodies retain full antigen binding capacity and are considerably stable. Conventional antibodies are composed with variable domains along with heavy chains and light chains. When binding with proteins, all three parts of them are necessarily involved. Hence, nanobodies’ comparably simple structure greatly increases their antigen binding affinity. What’s even better is that it’s less costly to make nanobodies than antibodies. According to the information from iCAN database (Institute collection and Analysis of Nanobody), over two thousand nanobodies are available for recognizing different antigens including molecular-bound molecules and soluble molecules.

  Compared with antibodies, the unique features that nanobodies possess make them ideal for therapeutic and bioengineering tools. As a result, nanobodies are applied in our mechanism.



Name Conventional antibody Nanobody
Size 150–160 kDa 12-15 kDa
Composition Variable domains + Heavy chains + Light chains Variable domain fragments
Structure (incomparison) Complex Simple
Antigen binding affinity High Even better (nano-to-picomolar affinities)
Thermal Stability 65°C for 20 mins diminishes the activities of almost all antibodies Highly heat-resistant
(functional and active at 70°C or even at 2-hour 90°C heat shock)
Price Varies with the products Less expensive than antibodies