Difference between revisions of "Team:CCU Taiwan/Composite Part"
Allen850413 (Talk | contribs) |
|||
| (5 intermediate revisions by one other user not shown) | |||
| Line 92: | Line 92: | ||
<a href="https://2018.igem.org/Team:CCU_Taiwan/Medal"><li class="list" id="home3">Medals</li></a> | <a href="https://2018.igem.org/Team:CCU_Taiwan/Medal"><li class="list" id="home3">Medals</li></a> | ||
<a href="https://2018.igem.org/Team:CCU_Taiwan/Judge"><li class="list" id="home4">For Judges</li></a> | <a href="https://2018.igem.org/Team:CCU_Taiwan/Judge"><li class="list" id="home4">For Judges</li></a> | ||
| + | <a href="https://2018.igem.org/Team:CCU_Taiwan/Achievements"><li class="list" id="home5">Achievements</li></a> | ||
</ul> | </ul> | ||
</li> | </li> | ||
| Line 130: | Line 131: | ||
<a href="https://2018.igem.org/Team:CCU_Taiwan/Entrepreneurship"><li class="list" id="human_practice3">Entrepreneurship</li></a> | <a href="https://2018.igem.org/Team:CCU_Taiwan/Entrepreneurship"><li class="list" id="human_practice3">Entrepreneurship</li></a> | ||
<a href="https://2018.igem.org/Team:CCU_Taiwan/engaging_experts"><li class="list" id="human_practice4">Engaging Experts</li></a> | <a href="https://2018.igem.org/Team:CCU_Taiwan/engaging_experts"><li class="list" id="human_practice4">Engaging Experts</li></a> | ||
| − | <a href="https://2018.igem.org/Team:CCU_Taiwan/ | + | <a href="https://2018.igem.org/Team:CCU_Taiwan/Integrate"><li class="list" id="human_practice5">Integrated HP</li></a> |
</ul> | </ul> | ||
</li> | </li> | ||
| Line 147: | Line 148: | ||
</header> | </header> | ||
| + | <div class="indicator"> | ||
| + | <div class="pointerProject" id="2"><a href="#ca1">laccase 1</a></div> | ||
| + | <div class="pointerProject" id="3"><a href="#ca2">peroxidase 18</a></div> | ||
| + | <div class="pointerProject" id="4"><a href="#ca3">peroxidase 16</a></div> | ||
| + | </div> | ||
<div class="backgroundParts"> | <div class="backgroundParts"> | ||
<div class="photoComposite"><h1 class="bigtitle">COMPOSITE PART<h1></div> | <div class="photoComposite"><h1 class="bigtitle">COMPOSITE PART<h1></div> | ||
<div class="content"> | <div class="content"> | ||
| − | <p class="second">BBa_K2809011<br> | + | <p class="second" id="ca1"><a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2809011">BBa_K2809011</a><br> |
laccase 1 | laccase 1 | ||
</p> | </p> | ||
| − | <p class="description">We use pGAPZ A vector from invitrogen and insert this part to construct our vector. We constructed this part by combining BBa_K2809001, BBa_K2809002 and BBa_K2809010.<br> | + | <p class="description">  We use pGAPZ A vector from invitrogen and insert this part to construct our vector. We constructed this part by combining BBa_K2809001, BBa_K2809002 and BBa_K2809010.<br> |
| − | This part contain a Kozak sequence for initiating and enhancing translation, Prepro-alpha-factor as a signal peptide for secretion, codon-optimized version of laccase gene sequence, HA tag for Western Blot protein detection and 6xHis-tag for protein purification. | + |   This part contain a Kozak sequence for initiating and enhancing translation, Prepro-alpha-factor as a signal peptide for secretion, codon-optimized version of laccase gene sequence, HA tag for Western Blot protein detection and 6xHis-tag for protein purification. |
| − | </p> | + | </p><br> |
<div id="Composite1" class="polaroid"> | <div id="Composite1" class="polaroid"> | ||
| Line 163: | Line 169: | ||
<div class="container"> | <div class="container"> | ||
<p>Figure 1: The schematic structure of gene design- Lac1.</p> | <p>Figure 1: The schematic structure of gene design- Lac1.</p> | ||
| + | </div> | ||
| + | </div><br><br> | ||
| + | <p class="description">  It will produce the mature laccase 1 without Prepro-alpha-factor, and the molecular weight of enzyme will be 63.65 kilodaltons. | ||
| + | </p><br> | ||
| + | <div id="Composite1-2" class="polaroid"> | ||
| + | <img src="https://static.igem.org/mediawiki/parts/2/2f/T--CCU_Taiwan--_lac1_western_blot.jpeg" style="width:100%"> | ||
| + | <div class="container"> | ||
| + | <p>Figure 2: The result of western blot— laccase 1.</p> | ||
</div> | </div> | ||
</div> | </div> | ||
| + | <br><br><br> | ||
| − | + | <p class="second" id="ca2"><a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2809021">BBa_K2809021</a><br> | |
| − | + | ||
| − | <p class="second">BBa_K2809021<br> | + | |
peroxidase 18 | peroxidase 18 | ||
</p> | </p> | ||
| − | <p class="description"> | + | <p class="description">  We use pGAPZ A vector from invitrogen and insert this part to construct our vector. We constructed this part by combining BBa_K2809001, BBa_K2809002 and BBa_K2809020.<br> |
This part contain a Kozak sequence for initiating and enhancing translation, Prepro-alpha-factor as a signal peptide for secretion, codon-optimized version of peroxidase 18 gene sequence, V5-tag for Western Blot protein detection and 6xHis-tag for protein purification. | This part contain a Kozak sequence for initiating and enhancing translation, Prepro-alpha-factor as a signal peptide for secretion, codon-optimized version of peroxidase 18 gene sequence, V5-tag for Western Blot protein detection and 6xHis-tag for protein purification. | ||
| − | </p> | + | </p><br><br> |
<div id="Composite2" class="polaroid"> | <div id="Composite2" class="polaroid"> | ||
<img src="https://static.igem.org/mediawiki/parts/9/9e/T--CCU_Taiwan--114.png" style="width:100%"> | <img src="https://static.igem.org/mediawiki/parts/9/9e/T--CCU_Taiwan--114.png" style="width:100%"> | ||
<div class="container"> | <div class="container"> | ||
| − | <p>Figure | + | <p>Figure 3: The schematic structure of gene design- Px18.</p> |
</div> | </div> | ||
</div><br><br> | </div><br><br> | ||
| − | + | <p class="description">  It will produce the mature peroxidase 16 without Prepro-alpha-factor, and the molecular weight of enzyme should be 35.29 kilodaltons. However, because of protein N-linked glycosylation, the molecular weight of enzyme will be about 37~45 kilodaltons according to the Western blot result. | |
| − | + | </p><br> | |
| + | <div id="Composite2-2" class="polaroid"> | ||
| + | <img src="https://static.igem.org/mediawiki/parts/6/62/T--CCU_Taiwan--_px16_western_blot-p.png" style="width:100%"> | ||
| + | <div class="container"> | ||
| + | <p>Figure 4: The result of Western blot— peroxidase 16.</p> | ||
| + | </div> | ||
| + | </div><br><br | ||
<br> | <br> | ||
| − | <p class="second">BBa_K2809031<br> | + | <p class="second" id="ca3"><a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K2809031">BBa_K2809031</a><br> |
peroxidase 16 | peroxidase 16 | ||
</p> | </p> | ||
| − | <p class="description"> | + | <p class="description">  We use pGAPZ A vector from invitrogen and insert this part to construct our vector. We constructed this part by combining BBa_K2809001, BBa_K2809002 and BBa_K2809030.<br> |
This part contain a Kozak sequence for initiating and enhancing translation, Prepro-alpha-factor as a signal peptide for secretion, codon-optimized version of peroxidase 16 gene sequence, FLAG-tag for Western Blot protein detection and 6xHis-tag for protein purification. | This part contain a Kozak sequence for initiating and enhancing translation, Prepro-alpha-factor as a signal peptide for secretion, codon-optimized version of peroxidase 16 gene sequence, FLAG-tag for Western Blot protein detection and 6xHis-tag for protein purification. | ||
| − | </p><br> <div id="Composite3" class="polaroid"> | + | </p><br><br> <div id="Composite3" class="polaroid"> |
<img src="https://static.igem.org/mediawiki/parts/1/1e/T--CCU_Taiwan--117.png" style="width:100%"> | <img src="https://static.igem.org/mediawiki/parts/1/1e/T--CCU_Taiwan--117.png" style="width:100%"> | ||
<div class="container"> | <div class="container"> | ||
| − | <p>Figure | + | <p>Figure 5: The schematic structure of gene design- Px16.</p> |
</div> | </div> | ||
</div><br><br> | </div><br><br> | ||
| + | <p class="description">  We use pGAPZ A vector from invitrogen and insert this part to construct our vector. We constructed this part by combining BBa_K2809001, BBa_K2809002 and BBa_K2809030.<br> | ||
| + | This part contain a Kozak sequence for initiating and enhancing translation, Prepro-alpha-factor as a signal peptide for secretion, codon-optimized version of peroxidase 16 gene sequence, FLAG-tag for Western Blot protein detection and 6xHis-tag for protein purification. | ||
| + | |||
| + | </p><br><br> | ||
| + | <div id="Composite3-2" class="polaroid"> | ||
| + | <img src="https://static.igem.org/mediawiki/parts/4/4b/T--CCU_Taiwan--_px18_western_blot-s.png" style="width:100%"> | ||
| + | <div class="container"> | ||
| + | <p>Figure 6: The result of Western blot— peroxidase 18(soup).</p> | ||
| + | </div> | ||
| + | </div> | ||
| + | <br> | ||
| + | <br> | ||
| + | <div id="Composite3-3" class="polaroid"> | ||
| + | <img src="https://static.igem.org/mediawiki/parts/3/37/T--CCU_Taiwan--_px18_western_blot-p.png" style="width:100%"> | ||
| + | <div class="container"> | ||
| + | <p>Figure 7: The result of Western blot— peroxidase 18(protein extraction from pellet).</p> | ||
| + | </div> | ||
| + | </div> | ||
| + | |||
| + | |||
| + | |||
| + | |||
| + | <br><br><br> | ||
<p class="second">Part construction in pGAPZ A:</p><br> | <p class="second">Part construction in pGAPZ A:</p><br> | ||
<div class="row"> | <div class="row"> | ||
Latest revision as of 08:47, 1 December 2018
COMPOSITE PART
BBa_K2809011
laccase 1
We use pGAPZ A vector from invitrogen and insert this part to construct our vector. We constructed this part by combining BBa_K2809001, BBa_K2809002 and BBa_K2809010.
This part contain a Kozak sequence for initiating and enhancing translation, Prepro-alpha-factor as a signal peptide for secretion, codon-optimized version of laccase gene sequence, HA tag for Western Blot protein detection and 6xHis-tag for protein purification.
Figure 1: The schematic structure of gene design- Lac1.
It will produce the mature laccase 1 without Prepro-alpha-factor, and the molecular weight of enzyme will be 63.65 kilodaltons.
Figure 2: The result of western blot— laccase 1.
BBa_K2809021
peroxidase 18
We use pGAPZ A vector from invitrogen and insert this part to construct our vector. We constructed this part by combining BBa_K2809001, BBa_K2809002 and BBa_K2809020.
This part contain a Kozak sequence for initiating and enhancing translation, Prepro-alpha-factor as a signal peptide for secretion, codon-optimized version of peroxidase 18 gene sequence, V5-tag for Western Blot protein detection and 6xHis-tag for protein purification.
Figure 3: The schematic structure of gene design- Px18.
It will produce the mature peroxidase 16 without Prepro-alpha-factor, and the molecular weight of enzyme should be 35.29 kilodaltons. However, because of protein N-linked glycosylation, the molecular weight of enzyme will be about 37~45 kilodaltons according to the Western blot result.
Figure 4: The result of Western blot— peroxidase 16.
BBa_K2809031
peroxidase 16
We use pGAPZ A vector from invitrogen and insert this part to construct our vector. We constructed this part by combining BBa_K2809001, BBa_K2809002 and BBa_K2809030.
This part contain a Kozak sequence for initiating and enhancing translation, Prepro-alpha-factor as a signal peptide for secretion, codon-optimized version of peroxidase 16 gene sequence, FLAG-tag for Western Blot protein detection and 6xHis-tag for protein purification.
Figure 5: The schematic structure of gene design- Px16.
We use pGAPZ A vector from invitrogen and insert this part to construct our vector. We constructed this part by combining BBa_K2809001, BBa_K2809002 and BBa_K2809030.
This part contain a Kozak sequence for initiating and enhancing translation, Prepro-alpha-factor as a signal peptide for secretion, codon-optimized version of peroxidase 16 gene sequence, FLAG-tag for Western Blot protein detection and 6xHis-tag for protein purification.
Figure 6: The result of Western blot— peroxidase 18(soup).
Figure 7: The result of Western blot— peroxidase 18(protein extraction from pellet).
Part construction in pGAPZ A:
Figure 4: PCR result.
Well1: Marker/ Well2, 3, 4: Lac1 Colony 1, 2, 3/ Well5, 6, 7: Px16 Colony 1, 2, 3/ Well8, 9, 10: Px18 Colony 1, 2, 3/ Well11: pGAPZ A Colony
Insert long after PCR — pGAPZ A_Px16 :1377 bp/ pGAPZ A_Px18 :1359 bp/ pGAPZ A_Lac1 :2124bp
Figure 5: Miniprep plasmid digest by EcoRI, PstI.
Well 1: Marker/ Well2, 3, 4: Plasmid of Lac1 colony1, 2, 3 after EcoRI, AgeI digest/ Well5, 6, 7: Plasmid of Px16 colony1, 2, 3 after EcoRI, AgeI digest/ Well8, 9, 10: Plasmid of Px18 colony1, 2, 3 after EcoRI, AgeI digest
Vector long after digest — pGAPZ A: 2884bp
Insert long after digest — Px16: 1295bp/ Px18: 1277bp/ Lac1: 2042bp