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<li>Make The Gel For Electrophoresis</li> | <li>Make The Gel For Electrophoresis</li> | ||
<li>Run Gel Electrophoresis To Check The Colony PCR Product</li> | <li>Run Gel Electrophoresis To Check The Colony PCR Product</li> | ||
+ | </ol> | ||
+ | |||
+ | <h3>Heavy Day</h3> | ||
+ | <p>The heavy day consists of:</p> | ||
+ | <ol> | ||
+ | <li>Previously grown plasmid extraction</li> | ||
+ | <li>Plasmid PCR</li> | ||
+ | <li>Gel extraction</li> | ||
+ | <li>Digestion</li> | ||
+ | <li>Ligation</li> | ||
+ | <li>Transformation | ||
+ | </li> | ||
+ | </ol> | ||
+ | |||
+ | <h3>Colony PCR (Thermo DreamTaq®)</h3> | ||
+ | <ol> | ||
+ | <li>Make the Colony PCR mix (we use Thermo' DreamTaq) with the mix amount slightly modified: | ||
+ | <table border="1"> | ||
+ | <tr> | ||
+ | <th scope="col">Item</th> | ||
+ | <th scope="col">uL</th> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td style="width:800;">Primer(Forward and reverse)</td> | ||
+ | <td style="width:200;">1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td style="width:800;">dNTP (10mM)</td> | ||
+ | <td style="width:200;">1</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td style="width:800;">10x DreamTaq buffer</td> | ||
+ | <td style="width:200;">5</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td style="width:800;">Taq Polymerase</td> | ||
+ | <td style="width:200;">0.2</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td style="width:800;">ddH20</td> | ||
+ | <td style="width:200;">42.8</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td style="width:800;">Total</td> | ||
+ | <td style="width:200;">50</td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | </li> | ||
+ | <li>Select a colony using a tip or toothpick.</li> | ||
+ | <li>Dip it in a PCR tube and swirl it around. | ||
+ | <p>PCR run protocol</p> | ||
+ | <table border="1"> | ||
+ | <tr> | ||
+ | <td style="width:400;">Temperature</td> | ||
+ | <td style="width:500;">Time</td> | ||
+ | <td style="width:400;"> </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td style="width:400;">94℃</td> | ||
+ | <td style="width:500;">60s</td> | ||
+ | <td style="width:400;"> </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td style="width:400;">94℃</td> | ||
+ | <td style="width:500;">15s</td> | ||
+ | <td style="width:400;"> </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td style="width:400;">55℃</td> | ||
+ | <td style="width:500;">20s</td> | ||
+ | <td style="width:400;">30-35 cycles</td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td style="width:400;">72℃</td> | ||
+ | <td style="width:500;">1kb/min + 5-10s</td> | ||
+ | <td style="width:400;"> </td> | ||
+ | </tr> | ||
+ | <tr> | ||
+ | <td style="width:400;">72℃</td> | ||
+ | <td style="width:500;">300s</td> | ||
+ | <td style="width:400;"> </td> | ||
+ | </tr> | ||
+ | </table> | ||
+ | </li> | ||
</ol> | </ol> | ||
</div> | </div> |
Revision as of 04:00, 1 October 2018
Protocols
E.coli Protocols
Two-day Efficient Cloning Cycle
We used an efficient two day cloning cycle split into a "Light" day and a "Heavy" day.
Light Day
The light day consists of Colony PCR and liquid culture of colonies transformed from a previous day.
-
The 3-in-1
First, count the number of colonies you want to check. Then, do the following 3 things sequentially:
- Liquid culture
- 2nd time plate
- Colony PCR
(Use the same tip to add the template to these three things)
- Make The Gel For Electrophoresis
- Run Gel Electrophoresis To Check The Colony PCR Product
Heavy Day
The heavy day consists of:
- Previously grown plasmid extraction
- Plasmid PCR
- Gel extraction
- Digestion
- Ligation
- Transformation
Colony PCR (Thermo DreamTaq®)
- Make the Colony PCR mix (we use Thermo' DreamTaq) with the mix amount slightly modified:
Item uL Primer(Forward and reverse) 1 dNTP (10mM) 1 10x DreamTaq buffer 5 Taq Polymerase 0.2 ddH20 42.8 Total 50 - Select a colony using a tip or toothpick.
- Dip it in a PCR tube and swirl it around.
PCR run protocol
Temperature Time 94℃ 60s 94℃ 15s 55℃ 20s 30-35 cycles 72℃ 1kb/min + 5-10s 72℃ 300s
Plasmid Extraction
ballalalla
Plasmid Extraction
ballalalla
Plasmid Extraction
ballalalla