Difference between revisions of "Team:XMU-China/Parts"

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{{XMU-China}}
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<h1>Parts</h1>
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<p>Each team will make new parts during iGEM and will submit them to the Registry of Standard Biological Parts. The iGEM software provides an easy way to present the parts your team has created. The <code>&lt;groupparts&gt;</code> tag (see below) will generate a table with all of the parts that your team adds to your team sandbox.</p>
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<p>Remember that the goal of proper part documentation is to describe and define a part, so that it can be used without needing to refer to the primary literature. Registry users in future years should be able to read your documentation and be able to use the part successfully. Also, you should provide proper references to acknowledge previous authors and to provide for users who wish to know more.</p>
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<h3>Note</h3>
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<p>Note that parts must be documented on the <a href="http://parts.igem.org/Main_Page"> Registry</a>. This page serves to <i>showcase</i> the parts you have made. Future teams and other users and are much more likely to find parts by looking in the Registry than by looking at your team wiki.</p>
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<h3>Adding parts to the registry</h3>
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<p>You can add parts to the Registry at our <a href="http://parts.igem.org/Add_a_Part_to_the_Registry">Add a Part to the Registry</a> link.</p>
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<p>We encourage teams to start completing documentation for their parts on the Registry as soon as you have it available. The sooner you put up your parts, the better you will remember all the details about your parts. Remember, you don't need to send us the DNA sample before you create an entry for a part on the Registry. (However, you <b>do</b> need to send us the DNA sample before the Jamboree. If you don't send us a DNA sample of a part, that part will not be eligible for awards and medal criteria.)</p>
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<div class="button_link">
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<a href="http://parts.igem.org/Add_a_Part_to_the_Registry">
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ADD PARTS
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<h3>Inspiration</h3>
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<p>We have a created  a <a href="http://parts.igem.org/Well_Documented_Parts">collection of well documented parts</a> that can help you get started.</p>
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<p> You can also take a look at how other teams have documented their parts in their wiki:</p>
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<ul>
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<li><a href="https://2014.igem.org/Team:MIT/Parts"> 2014 MIT </a></li>
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<li><a href="https://2014.igem.org/Team:Heidelberg/Parts"> 2014 Heidelberg</a></li>
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<li><a href="https://2014.igem.org/Team:Tokyo_Tech/Parts">2014 Tokyo Tech</a></li>
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<h3>What information do I need to start putting my parts on the Registry?</h3>
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<p>The information needed to initially create a part on the Registry is:</p>
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<ul>
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<li>Part Name</li>
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<li>Part type</li>
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<li>Creator</li>
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<li>Sequence</li>
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<li>Short Description (60 characters on what the DNA does)</li>
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<li>Long Description (Longer description of what the DNA does)</li>
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<li>Design considerations</li>
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</ul>
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<p>
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We encourage you to put up <em>much more</em> information as you gather it over the summer. If you have images, plots, characterization data and other information, please also put it up on the part page. </p>
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<h3>Part Table </h3>
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<p>Please include a table of all the parts your team has made during your project on this page. Remember part characterization and measurement data must go on your team part pages on the Registry. </p>
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</html>
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<groupparts>iGEM18 XMU-China</groupparts>
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                            <ul>
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                                <li><a href="https://2018.igem.org/Team:XMU-China/Description">Description</a></li>
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                                <li><a href="https://2018.igem.org/Team:XMU-China/Design">Design</a></li>
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                                <li><a href="https://2018.igem.org/Team:XMU-China/Demonstrate">Demonstrate</a></li>
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                                <li><a href="https://2018.igem.org/Team:XMU-China/Results">Results</a></li>
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                            <a href="#">Hardware</a>
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                            <ul>
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                                <li><a href="https://2018.igem.org/Team:XMU-China/Hardware">Overview</a></li>
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                                <li><a href="https://2018.igem.org/Team:XMU-China/Hardware/Microfluidic_Chips">Microfluidic chips</a></li>
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                                <li><a href="https://2018.igem.org/Team:XMU-China/Hardware/Fluorescenc_Detection">Fluorescence Detection</a></li>
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                                <li><a href="https://2018.igem.org/Team:XMU-China/Hardware/Straberry_Pi">Straberry Pi</a></li>
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                                <li><a href="https://2018.igem.org/Team:XMU-China/Applied_Design">Applied Design</a></li>
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                                <li><a href="https://2018.igem.org/Team:XMU-China/Software">APP</a></li>
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                            <a href="#">Model</a>
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                                <li><a href="https://2018.igem.org/Team:XMU-China/Model">Overview</a></li>
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                                am:XMU-China/Human_Practices">Overview</a></li>
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                                <li><a href="https://2018.igem.org/Team:XMU-China/HP/Silver">Silver</a></li>
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                                <li><a href="https://2018.igem.org/Team:XMU-China/HP/Gold_Integrated">Gold</a></li>
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                                <li><a href="https://2018.igem.org/Team:XMU-China/Entrepreneurship">Entrepreneurship</a></li>
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                            <a href="#">Other Works</a>
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                            <ul>
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                                <li><a href="https://2018.igem.org/Team:XMU-China/InterLab">InterLab</a></li>
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                                <li><a href="https://2018.igem.org/Team:XMU-China/Improve">Improve</a></li>
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                                <li><a href="https://2018.igem.org/Team:XMU-China/Safety">Safety</a></li>
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                                <li><a href="https://2018.igem.org/Team:XMU-China/Measurement">Measurement</a></li>
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                                <li><a href="https://2018.igem.org/Team:XMU-China/Experiments">Experiments</a></li>
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                                <li><a href="https://2018.igem.org/Team:XMU-China/Attributions">Attributions</a></li>
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                                <li><a href="https://2018.igem.org/Team:XMU-China/Judging">Judging</a></li>
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                        <li><a href="https://2018.igem.org/Team:XMU-China/Judging">Judging</a></li>
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                    </ul>
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                    <ul>
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                        <li><a href="https://2018.igem.org/Team:XMU-China/Notebook">Notebook</a></li>
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                        <li><a href="https://2018.igem.org/Team:XMU-China/Experiments">Experiments</a></li>
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                        <li><a href="https://2018.igem.org/Team:XMU-China/Engineering">Engineering</a></li>
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                    </ul>
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                </div>
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                <div id="Other_Works">
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                    <div class="nav-word">Other Works</div>
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                    <ul>
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                        <li><a href="https://2018.igem.org/Team:XMU-China/InterLab">InterLab</a></li>
 +
                        <li><a href="https://2018.igem.org/Team:XMU-China/Improve">Improve</a></li>
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                        <li><a href="https://2018.igem.org/Team:XMU-China/Safety">Safety</a></li>
 +
                        <li><a href="https://2018.igem.org/Team:XMU-China/Measurement">Measurement</a></li>
 +
                    </ul>
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                </div>
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                <div id="Human_Practice">
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                    <div class="nav-word">Human Practice</div>
 +
                    <ul>
 +
                        <li><a href="https://2018.igem.org/Team:XMU-China/Human_Practices">Overview</a></li>
 +
                        <li><a href="https://2018.igem.org/Team:XMU-China/HP/Silver">Silver</a></li>
 +
                        <li><a href="https://2018.igem.org/Team:XMU-China/HP/Gold_Integrated">Gold</a></li>
 +
                        <li><a href="https://2018.igem.org/Team:XMU-China/Public_Engagement">Engagement</a></li>
 +
                        <li><a href="https://2018.igem.org/Team:XMU-China/Collaborations">Collaborations</a></li>
 +
                        <li><a href="https://2018.igem.org/Team:XMU-China/Entrepreneurship">Entrepreneurship</a></li>
 +
                    </ul>
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                </div>
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                <div id="Model">
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                    <div class="nav-word">Model</div>
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                    <ul>
 +
                        <li><a href="https://2018.igem.org/Team:XMU-China/Model">Overview</a></li>
 +
                    </ul>
 +
                </div>
 +
                <div id="Hardwork">
 +
                    <div class="nav-word">Hardwork</div>
 +
                    <ul>
 +
                        <li><a href="https://2018.igem.org/Team:XMU-China/Hardware">Overview</a></li>
 +
                        <li><a href="https://2018.igem.org/Team:XMU-China/Hardware/Microfluidic_Chips">Microfluidic chips</a></li>
 +
                        <li><a href="https://2018.igem.org/Team:XMU-China/Hardware/Fluorescenc_Detection">Fluorescence Detection</a></li>
 +
                        <li><a href="https://2018.igem.org/Team:XMU-China/Hardware/Straberry_Pi">Straberry Pi</a></li>
 +
                        <li><a href="https://2018.igem.org/Team:XMU-China/Applied_Design">Applied Design</a></li>
 +
                        <li><a href="https://2018.igem.org/Team:XMU-China/Software">APP</a></li>
 +
                    </ul>
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                </div>
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                <div id="Project">
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                    <div class="nav-word">Project</div>
 +
                    <ul>
 +
                        <li><a href="https://2018.igem.org/Team:XMU-China/Description">Description</a></li>
 +
                        <li><a href="https://2018.igem.org/Team:XMU-China/Design">Design</a></li>
 +
                        <li><a href="https://2018.igem.org/Team:XMU-China/Demonstrate">Demonstrate</a></li>
 +
                        <li><a href="https://2018.igem.org/Team:XMU-China/Results">Results</a></li>
 +
                        <li><a href="https://2018.igem.org/Team:XMU-China/Parts">Parts</a></li>
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                    </ul>
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            <div class="word">Parts</div>
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 +
        <nav class="Quick-navigation">
 +
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                    <a href="#Cell_Measurement"id="Quick_A">Cell Measurement</a></a>
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                    <a href="#Colony_Forming_Units" id="Quick_B">Colony Forming Units</a></a>
 +
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                    <img id="turn_img" src="https://static.igem.org/mediawiki/2018/d/d0/T--XMU-China--right53.png">
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                    <a href="#Experience_and_Discussion" id="Quick_C">Experience and Discussion</a></a>
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                <a href="#Provenance" class="Quick-navigation-item">
 +
                    <img id="turn_img" src="https://static.igem.org/mediawiki/2018/1/11/T--XMU-China--right54.png">
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                    <a href="#Provenance"id="Quick_D">Provenance</a></a>
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                <a href="#Reference" class="Quick-navigation-item">
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                    <img id="turn_img" src="https://static.igem.org/mediawiki/2018/b/ba/T--XMU-China--right55.png">
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                    <a href="#Reference"id="Quick_F">Reference</a></a>
 +
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 +
        </nav>
 +
        <div class="main">
 +
            <section id="Cell_Measurement" class="js-scroll-step">
 +
                <div class="headline">
 +
                    Parts
 +
                </div>
 +
                <p class="indent">This year we have designed more than 20 parts, half are basic parts, the other are composite ones. The parts are all designed by ourselves and most of them have been tested to insure their reliability. To see their specific function, you can click <span><a  class="click_here" href="https://2018.igem.org/Team:XMU-China/Design">here</a></span> to learn about our project, or browse the specific page on <span><a class="click_here" href="http://parts.igem.org/Main_Page">parts.igem.org</a></span> by clicking on the part numbers.</p>
 +
                <h1>Basic Parts</h1>
 +
                <p class="indent">This year we have designed eleven basic parts mostly from the Kai ABC systems. <a href="http://parts.igem.org/Part:BBa_K2623003">BBa_K2623003</a> is our favorite basic part, which is the core part of the Kai circuit, acting as a hexamer. This part can be both auto phosphorylated and dephosphorylated, and it can achieve about 24 hours of phosphorylation-dephosphorylation oscillation under the regulation of KaiA and KaiB.
 +
                </p>
 +
                <table class="table">
 +
                    <tr>
 +
                        <th>Favorite</th>
 +
                        <th>Register Name</th>
 +
                        <th>Code used in Lab</th>
 +
                        <th>Description</th>
 +
                        <th>Types</th>
 +
                        <th>Lenth</th>
 +
                        <th>Designer</th>
 +
                    </tr>
 +
                    <tr>
 +
                        <td>R</td>
 +
                        <td><a href="http://parts.igem.org/Part:BBa_K2623003">BBa_K2623003</a></td>
 +
                        <td>KaiC</td>
 +
                        <td>KaiC coding region</td>
 +
                        <td>Coding</td>
 +
                        <td>1560 bp</td>
 +
                        <td>Xinyi Ren</td>
 +
                    </tr>
 +
                    <tr>
 +
                        <td></td>
 +
                        <td><a href="http://parts.igem.org/Part:BBa_K2623001">BBa_K2623001</a></td>
 +
                        <td>KaiA</td>
 +
                        <td>KaiA coding region</td>
 +
                        <td>Coding</td>
 +
                        <td>852 bp</td>
 +
                        <td>Yi Lin</td>
 +
                    </tr>
 +
                    <tr>
 +
                        <td></td>
 +
                        <td><a href="http://parts.igem.org/Part:BBa_K2623002">BBa_K2623002</a></td>
 +
                        <td>KaiB</td>
 +
                        <td>KaiB coding region</td>
 +
                        <td>Coding</td>
 +
                        <td>309 bp</td>
 +
                        <td>Yuhan Qin</td>
 +
                    </tr>
 +
                    <tr>
 +
                        <td></td>
 +
                        <td><a href="http://parts.igem.org/Part:BBa_K2623004">BBa_K2623004</a></td>
 +
                        <td>SasA</td>
 +
                        <td>SasA coding region</td>
 +
                        <td>Coding</td>
 +
                        <td>1167 bp</td>
 +
                        <td>Yi Lin</td>
 +
                    </tr>
 +
                    <tr>
 +
                        <td></td>
 +
                        <td><a href="http://parts.igem.org/Part:BBa_K2623005">BBa_K2623005</a></td>
 +
                        <td>CikA</td>
 +
                        <td>CikA coding region</td>
 +
                        <td>Coding</td>
 +
                        <td>2265 bp</td>
 +
                        <td>Yuhan Qin</td>
 +
                    </tr>
 +
                    <tr>
 +
                        <td></td>
 +
                        <td><a href="http://parts.igem.org/Part:BBa_K2623006">BBa_K2623006</a></td>
 +
                        <td>paA</td>
 +
                        <td>paA coding region</td>
 +
                        <td>Coding</td>
 +
                        <td>753 bp</td>
 +
                        <td>Xinyi Ren</td>
 +
                    </tr>
 +
                    <tr>
 +
                        <td></td>
 +
                        <td><a href="http://parts.igem.org/Part:BBa_K2623007">BBa_K2623007</a></td>
 +
                        <td>SAHS</td>
 +
                        <td>SAHS coding region</td>
 +
                        <td>Coding</td>
 +
                        <td>510 bp</td>
 +
                        <td>Yingming Zhu</td>
 +
                    </tr>
 +
                    <tr>
 +
                        <td></td>
 +
                        <td><a href="http://parts.igem.org/Part:BBa_K2623008">BBa_K2623008</a></td>
 +
                        <td>CAHS</td>
 +
                        <td>CAHS coding region</td>
 +
                        <td>Coding</td>
 +
                        <td>714 bp</td>
 +
                        <td>Weizhao Li</td>
 +
                    </tr>
 +
                    <tr>
 +
                        <td></td>
 +
                        <td><a href="http://parts.igem.org/Part:BBa_K2623009">BBa_K2623009</a></td>
 +
                        <td>pKaiBC</td>
 +
                        <td>pKaiBC promoter</td>
 +
                        <td>egulatory</td>
 +
                        <td>89 bp</td>
 +
                        <td>Gezhi Xiao</td>
 +
                    </tr>
 +
                    <tr>
 +
                        <td></td>
 +
                        <td><a href="http://parts.igem.org/Part:BBa_K2623040">BBa_K2623040</a></td>
 +
                        <td>OmpA leader</td>
 +
                        <td>OmpA leader sequence </td>
 +
                        <td>Coding</td>
 +
                        <td>72 bp</td>
 +
                        <td>Niangui Cai</td>
 +
                    </tr>
 +
                    <tr>
 +
                        <td></td>
 +
                        <td><a href="http://parts.igem.org/Part:BBa_K2623027">BBa_K2623027</a></td>
 +
                        <td>NG7</td>
 +
                        <td>siRNA with C/Dbox RNA structure to bind with L7Ae (BBa_K2623026)</td>
 +
                        <td>Composite</td>
 +
                        <td>1447 bp</td>
 +
                        <td>Yunyun Hu</td>
 +
                    </tr>
 +
                </table>
 +
                <h1>Composite Parts</h1>
 +
                <p class="indent">We have designed a series of composite parts this year, and most of them could be useful tools for constructing other OMVs and KaiABC systems. And our favorite composite part is <a href="http://parts.igem.org/Part:BBa_K2623028">BBa_K2623028</a>, which links <a href="http://parts.igem.org/Part:BBa_K2623022">BBa_K2623022</a> and <a href="http://parts.igem.org/Part:BBa_K2623025">BBa_K2623025</a>, coding SpyTag-OmpA and SpyCatcher-L7Ae-RFP to be encapsulated into OMVs through the isopeptide bond formed between SpyTag/SpyCatche.</p>
 +
                <table class="table">
 +
                    <tr>
 +
                        <th>Favorite</th>
 +
                        <th>Register Name</th>
 +
                        <th>Code used in Lab</th>
 +
                        <th>Description</th>
 +
                        <th>Types</th>
 +
                        <th>Lenth</th>
 +
                        <th>Designer</th>
 +
                    </tr>
 +
                    <tr>
 +
                        <td>R</td>
 +
                        <td><a href="http://parts.igem.org/Part:BBa_K2623028">BBa_K2623028</a></td>
 +
                        <td>NG8-1</td>
 +
                        <td>A composite part linked by BBa_K2623022 and BBa_K2623025</td>
 +
                        <td>Composite</td>
 +
                        <td>3410 bp</td>
 +
                        <td>Niangui Cai</td>
 +
                    </tr>
 +
                    <tr>
 +
                        <td></td>
 +
                        <td><a href="http://parts.igem.org/Part:BBa_K2623011">BBa_K2623011</a></td>
 +
                        <td>Kai 2</td>
 +
                        <td>Phosphorylation pathsway builder of Kai</td>
 +
                        <td>Composite</td>
 +
                        <td>4444 bp</td>
 +
                        <td>Gezhi Xiao</td>
 +
                    </tr>
 +
                    <tr>
 +
                        <td></td>
 +
                        <td><a href="http://parts.igem.org/Part:BBa_K2623013">BBa_K2623013</a></td>
 +
                        <td>Kai 1 3</td>
 +
                        <td>Kai's phosphorylation core oscllator builder and SfYFP reportor for pKaiBC</td>
 +
                        <td>Composite</td>
 +
                        <td>3978 bp</td>
 +
                        <td>Hongling Liu</td>
 +
                    </tr>
 +
                    <tr>
 +
                        <td></td>
 +
                        <td><a href="http://parts.igem.org/Part:BBa_K2623014">BBa_K2623014</a></td>
 +
                        <td>CAHS 1</td>
 +
                        <td>Cytosolic-abundant heat soluble protein "CAHS " (promoter, RBS, RFP, lacI and double terminator)</td>
 +
                        <td>Composite</td>
 +
                        <td>2891 bp</td>
 +
                        <td>Hongling Liu</td>
 +
                    </tr>
 +
                    <tr>
 +
                        <td></td>
 +
                        <td><a href="http://parts.igem.org/Part:BBa_K2623015">BBa_K2623015</a></td>
 +
                        <td>SAHS 1</td>
 +
                        <td>Secretory-abundant heat soluble protein "SAHS " (promoter, RBS, RFP and double terminator)</td>
 +
                        <td>Composite</td>
 +
                        <td>1425 bp</td>
 +
                        <td>Jun Dai</td>
 +
                    </tr>
 +
                    <tr>
 +
                        <td></td>
 +
                        <td><a href="http://parts.igem.org/Part:BBa_K2623016">BBa_K2623016</a></td>
 +
                        <td>SAHS 2</td>
 +
                        <td>Secretory-abundant heat soluble protein "SAHS " (promoter, RBS, amilCP and double terminator)</td>
 +
                        <td>Composite</td>
 +
                        <td>1431 bp</td>
 +
                        <td>Yuanjun Shang</td>
 +
                    </tr>
 +
                    <tr>
 +
                        <td></td>
 +
                        <td><a href="http://parts.igem.org/Part:BBa_K2623021">BBa_K2623021</a></td>
 +
                        <td>NG1</td>
 +
                        <td>BBa_K2623022 with GFP at its N-termini.</td>
 +
                        <td>Reporter</td>
 +
                        <td>1657 bp</td>
 +
                        <td>Niangui Cai</td>
 +
                    </tr>
 +
                    <tr>
 +
                        <td></td>
 +
                        <td><a href="http://parts.igem.org/Part:BBa_K2623022">BBa_K2623022</a></td>
 +
                        <td>NG2</td>
 +
                        <td>Bacterial outer membrane protein A (OmpA) fused with SpyTag at its C-termini</td>
 +
                        <td>Composite</td>
 +
                        <td>910 bp</td>
 +
                        <td>Qiupeng Wang</td>
 +
                    </tr>
 +
                    <tr>
 +
                        <td></td>
 +
                        <td><a href="http://parts.igem.org/Part:BBa_K2623023">BBa_K2623023</a></td>
 +
                        <td>NG3</td>
 +
                        <td>Bacterial outer membrane protein A (OmpA) fused with SpyTag and GFP at its N-termini. </td>
 +
                        <td>Reporter</td>
 +
                        <td>1645 bp</td>
 +
                        <td>Junhong Chen</td>
 +
                    </tr>
 +
                    <tr>
 +
                        <td></td>
 +
                        <td><a href="http://parts.igem.org/Part:BBa_K2623024">BBa_K2623024</a></td>
 +
                        <td>NG4</td>
 +
                        <td>A non-GFP form of the BBa_K2623023</td>
 +
                        <td>Composite</td>
 +
                        <td>898 bp</td>
 +
                        <td>Jiyang Zheng</td>
 +
                    </tr>
 +
                    <tr>
 +
                        <td></td>
 +
                        <td><a href="http://parts.igem.org/Part:BBa_K2623025">BBa_K2623025</a></td>
 +
                        <td>NG5</td>
 +
                        <td>Archaeal ribosomal protein protein L7Ae fused with SpyCatcher and mRFP1.</td>
 +
                        <td>Reporter</td>
 +
                        <td>2613 bp</td>
 +
                        <td>Ruofan Yang</td>
 +
                    </tr>
 +
                    <tr>
 +
                        <td></td>
 +
                        <td><a href="http://parts.igem.org/Part:BBa_K2623026">BBa_K2623026</a></td>
 +
                        <td>NG6</td>
 +
                        <td>Archaeal ribosomal protein protein L7Ae fused with SpyCatcher.</td>
 +
                        <td>Composite</td>
 +
                        <td>2317 bp</td>
 +
                        <td>Yunyun Hu</td>
 +
                    </tr>
 +
                    <tr>
 +
                        <td></td>
 +
                        <td><a href="http://parts.igem.org/Part:BBa_K2623029">BBa_K2623029</a></td>
 +
                        <td>NG8-2</td>
 +
                        <td>A composite part linked by BBa_K2623022 and BBa_K2623026.</td>
 +
                        <td>Composite</td>
 +
                        <td>2698 bp</td>
 +
                        <td>Ye Qiang</td>
 +
                    </tr>
 +
                    <tr>
 +
                        <td></td>
 +
                        <td><a href="http://parts.igem.org/Part:BBa_K2623030">BBa_K2623030</a></td>
 +
                        <td>NG9-1</td>
 +
                        <td>A composite part linked by BBa_K2623024 and BBa_K2623025.</td>
 +
                        <td>Composite</td>
 +
                        <td>3410 bp</td>
 +
                        <td>Yang Liang</td>
 +
                    </tr>
 +
                    <tr>
 +
                        <td></td>
 +
                        <td><a href="http://parts.igem.org/Part:BBa_K2623031">BBa_K2623031</a></td>
 +
                        <td>NG9-2</td>
 +
                        <td>A composite part linked by BBa_K2623024 and BBa_K2623026</td>
 +
                        <td>Composite</td>
 +
                        <td>2698 bp</td>
 +
                        <td>Junhong Chen</td>
 +
                    </tr>
 +
                    <tr>
 +
                        <td></td>
 +
                        <td><a href="http://parts.igem.org/Part:BBa_K2623032">BBa_K2623032</a></td>
 +
                        <td>NG10</td>
 +
                        <td>A composite part linked by BBa_K2623024, BBa_K2623026 and BBa_K2623027</td>
 +
                        <td>Composite</td>
 +
                        <td>4153 bp</td>
 +
                        <td>Niangui Cai</td>
 +
                    </tr>
 +
                   
 +
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 +
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Revision as of 12:46, 11 October 2018

Team:XMU-China/Parts - 2018.igem.org

Parts
Parts

This year we have designed more than 20 parts, half are basic parts, the other are composite ones. The parts are all designed by ourselves and most of them have been tested to insure their reliability. To see their specific function, you can click here to learn about our project, or browse the specific page on parts.igem.org by clicking on the part numbers.

Basic Parts

This year we have designed eleven basic parts mostly from the Kai ABC systems. BBa_K2623003 is our favorite basic part, which is the core part of the Kai circuit, acting as a hexamer. This part can be both auto phosphorylated and dephosphorylated, and it can achieve about 24 hours of phosphorylation-dephosphorylation oscillation under the regulation of KaiA and KaiB.

Favorite Register Name Code used in Lab Description Types Lenth Designer
R BBa_K2623003 KaiC KaiC coding region Coding 1560 bp Xinyi Ren
BBa_K2623001 KaiA KaiA coding region Coding 852 bp Yi Lin
BBa_K2623002 KaiB KaiB coding region Coding 309 bp Yuhan Qin
BBa_K2623004 SasA SasA coding region Coding 1167 bp Yi Lin
BBa_K2623005 CikA CikA coding region Coding 2265 bp Yuhan Qin
BBa_K2623006 paA paA coding region Coding 753 bp Xinyi Ren
BBa_K2623007 SAHS SAHS coding region Coding 510 bp Yingming Zhu
BBa_K2623008 CAHS CAHS coding region Coding 714 bp Weizhao Li
BBa_K2623009 pKaiBC pKaiBC promoter egulatory 89 bp Gezhi Xiao
BBa_K2623040 OmpA leader OmpA leader sequence Coding 72 bp Niangui Cai
BBa_K2623027 NG7 siRNA with C/Dbox RNA structure to bind with L7Ae (BBa_K2623026) Composite 1447 bp Yunyun Hu

Composite Parts

We have designed a series of composite parts this year, and most of them could be useful tools for constructing other OMVs and KaiABC systems. And our favorite composite part is BBa_K2623028, which links BBa_K2623022 and BBa_K2623025, coding SpyTag-OmpA and SpyCatcher-L7Ae-RFP to be encapsulated into OMVs through the isopeptide bond formed between SpyTag/SpyCatche.

Favorite Register Name Code used in Lab Description Types Lenth Designer
R BBa_K2623028 NG8-1 A composite part linked by BBa_K2623022 and BBa_K2623025 Composite 3410 bp Niangui Cai
BBa_K2623011 Kai 2 Phosphorylation pathsway builder of Kai Composite 4444 bp Gezhi Xiao
BBa_K2623013 Kai 1 3 Kai's phosphorylation core oscllator builder and SfYFP reportor for pKaiBC Composite 3978 bp Hongling Liu
BBa_K2623014 CAHS 1 Cytosolic-abundant heat soluble protein "CAHS " (promoter, RBS, RFP, lacI and double terminator) Composite 2891 bp Hongling Liu
BBa_K2623015 SAHS 1 Secretory-abundant heat soluble protein "SAHS " (promoter, RBS, RFP and double terminator) Composite 1425 bp Jun Dai
BBa_K2623016 SAHS 2 Secretory-abundant heat soluble protein "SAHS " (promoter, RBS, amilCP and double terminator) Composite 1431 bp Yuanjun Shang
BBa_K2623021 NG1 BBa_K2623022 with GFP at its N-termini. Reporter 1657 bp Niangui Cai
BBa_K2623022 NG2 Bacterial outer membrane protein A (OmpA) fused with SpyTag at its C-termini Composite 910 bp Qiupeng Wang
BBa_K2623023 NG3 Bacterial outer membrane protein A (OmpA) fused with SpyTag and GFP at its N-termini. Reporter 1645 bp Junhong Chen
BBa_K2623024 NG4 A non-GFP form of the BBa_K2623023 Composite 898 bp Jiyang Zheng
BBa_K2623025 NG5 Archaeal ribosomal protein protein L7Ae fused with SpyCatcher and mRFP1. Reporter 2613 bp Ruofan Yang
BBa_K2623026 NG6 Archaeal ribosomal protein protein L7Ae fused with SpyCatcher. Composite 2317 bp Yunyun Hu
BBa_K2623029 NG8-2 A composite part linked by BBa_K2623022 and BBa_K2623026. Composite 2698 bp Ye Qiang
BBa_K2623030 NG9-1 A composite part linked by BBa_K2623024 and BBa_K2623025. Composite 3410 bp Yang Liang
BBa_K2623031 NG9-2 A composite part linked by BBa_K2623024 and BBa_K2623026 Composite 2698 bp Junhong Chen
BBa_K2623032 NG10 A composite part linked by BBa_K2623024, BBa_K2623026 and BBa_K2623027 Composite 4153 bp Niangui Cai