Patricia S (Talk | contribs) |
Bec Schacht (Talk | contribs) |
||
(21 intermediate revisions by 4 users not shown) | |||
Line 1: | Line 1: | ||
{{Template:UNSW_Australia/Navbar}} | {{Template:UNSW_Australia/Navbar}} | ||
{{Template:UNSW_Australia/Header}} | {{Template:UNSW_Australia/Header}} | ||
− | {{Template:UNSW_Australia/ | + | {{Template:UNSW_Australia/Basics}} |
<html> | <html> | ||
− | <div id="parts-content"> | + | |
+ | <div class="header" id="parts-header"> | ||
+ | <div class="header-img-txt"> | ||
+ | <div class="top-icon-div"> | ||
+ | <img height="150px" width="150px" class="top-icon" src="https://static.igem.org/mediawiki/2018/c/c0/T--UNSW_Australia--Icon-parts.png"> | ||
+ | </div> | ||
+ | <div class="bottom-icon-div"> | ||
+ | <img height="150px" width="150px" class="bottom-icon" src="https://static.igem.org/mediawiki/2018/f/fe/T--UNSW_Australia--Icon-parts-bw.png"> | ||
+ | </div> | ||
+ | <h1 class="shadow-text main-heading">Parts</h1> | ||
+ | </div> | ||
+ | <div class="header-line"> | ||
+ | <div id="parts-shadow-line" class="header-line-shadow"></div> | ||
+ | </div> | ||
+ | </div> | ||
+ | |||
+ | <div id="parts-content" class="to-load"> | ||
+ | <br/> | ||
+ | <p>All BioBrick parts were constructed from plasmids which were created by Gibson assembly of DNA gBlocks® synthesised by IDT. The relevant inserts were designed to contain the iGEM protein coding prefix and suffix and cloned into pETDuet™-1 or pRSFDuet™-1 plasmids using Gibson Assembly.</p> | ||
+ | <p>These plasmids were digested and the inserts were ligated into linearised pSB1C3 plasmid backbone, to construct BioBrick parts using 3A assembly. All parts submitted to the registry were validated by sequence verification and agarose gel electrophoresis after digestion with EcoRI and PstI.</p> | ||
+ | <p>Parts were also cloned into the pET19B expression vector for experimental characterisation. The protein coding parts were expressed in <em>Escherichia coli</em> T7 Express cells (NEB) and purified from cell lysates with Immobilised Metal Affinity Chromatography (IMAC) columns. The self-assembling functionality of our parts was further characterised by Size Exclusion Chromatography (SEC) and SDS-PAGE. From these experiments we were able to confirm the valid functionality of our parts, as they were experimentally expressed and purified, and confirmed to self-assemble as designed.</p> | ||
+ | |||
<table class="parts-table" width="100%"> | <table class="parts-table" width="100%"> | ||
<tr> | <tr> | ||
− | <th> | + | <th>Special Part</th> |
<th>Part Number</th> | <th>Part Number</th> | ||
<th>Part Type</th> | <th>Part Type</th> | ||
Line 16: | Line 37: | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
− | <td></td> | + | <td><a href="https://2018.igem.org/Team:UNSW_Australia/Basic_Part">Basic Part</a></td> |
− | <td>BBa_K2710000</td> | + | <td><a href="http://parts.igem.org/Part:BBa_K2710000">BBa_K2710000</a></td> |
<td>Coding</td> | <td>Coding</td> | ||
− | <td> | + | <td>His-Alpha Prefoldin</td> |
<td>Brian Ee</td> | <td>Brian Ee</td> | ||
<td>456</td> | <td>456</td> | ||
Line 25: | Line 46: | ||
<tr> | <tr> | ||
<td></td> | <td></td> | ||
− | <td>BBa_K2710001</td> | + | <td><a href="http://parts.igem.org/Part:BBa_K2710001">BBa_K2710001</a></td> |
<td>Coding</td> | <td>Coding</td> | ||
− | <td> | + | <td>His-Beta Prefoldin</td> |
<td>Brian Ee</td> | <td>Brian Ee</td> | ||
<td>396</td> | <td>396</td> | ||
Line 33: | Line 54: | ||
<tr> | <tr> | ||
<td></td> | <td></td> | ||
− | <td>BBa_K2710002</td> | + | <td><a href="http://parts.igem.org/Part:BBa_K2710002">BBa_K2710002</a></td> |
<td>Coding</td> | <td>Coding</td> | ||
− | <td> | + | <td>His-Alpha Prefoldin with SpyCatcher</td> |
<td>Brian Ee</td> | <td>Brian Ee</td> | ||
<td>822</td> | <td>822</td> | ||
Line 41: | Line 62: | ||
<tr> | <tr> | ||
<td></td> | <td></td> | ||
− | <td>BBa_K2710003</td> | + | <td><a href="http://parts.igem.org/Part:BBa_K2710003">BBa_K2710003</a></td> |
<td>Coding</td> | <td>Coding</td> | ||
− | <td> | + | <td>His-Beta Prefoldin with SnoopCatcher</td> |
<td>Brian Ee</td> | <td>Brian Ee</td> | ||
<td>759</td> | <td>759</td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
− | <td></td> | + | <td><a href="https://2018.igem.org/Team:UNSW_Australia/Improve">Improved Part</a></td> |
− | <td> | + | <td><a href="http://parts.igem.org/Part:BBa_K2710005">BBa_K2710005</a></td> |
<td>Coding</td> | <td>Coding</td> | ||
− | <td> | + | <td>His-IaaH with SpyTag</td> |
<td>Brian Ee</td> | <td>Brian Ee</td> | ||
− | <td> | + | <td>1497</td> |
</tr> | </tr> | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
</table> | </table> | ||
</div> | </div> | ||
Line 81: | Line 85: | ||
#parts-content { | #parts-content { | ||
− | padding: | + | padding: 0px 10%; |
margin: 0; | margin: 0; | ||
+ | } | ||
+ | h2 { | ||
+ | text-transform: uppercase; | ||
+ | text-align: center; | ||
+ | font-size: 1.7rem !important; | ||
+ | margin: 5px !important; | ||
+ | word-spacing: 0.5rem; | ||
+ | letter-spacing: -2px !important; | ||
+ | } | ||
+ | table { | ||
+ | margin-top: 50px !important; | ||
} | } | ||
</style> | </style> | ||
</html> | </html> |
Latest revision as of 18:09, 17 October 2018
Parts
All BioBrick parts were constructed from plasmids which were created by Gibson assembly of DNA gBlocks® synthesised by IDT. The relevant inserts were designed to contain the iGEM protein coding prefix and suffix and cloned into pETDuet™-1 or pRSFDuet™-1 plasmids using Gibson Assembly.
These plasmids were digested and the inserts were ligated into linearised pSB1C3 plasmid backbone, to construct BioBrick parts using 3A assembly. All parts submitted to the registry were validated by sequence verification and agarose gel electrophoresis after digestion with EcoRI and PstI.
Parts were also cloned into the pET19B expression vector for experimental characterisation. The protein coding parts were expressed in Escherichia coli T7 Express cells (NEB) and purified from cell lysates with Immobilised Metal Affinity Chromatography (IMAC) columns. The self-assembling functionality of our parts was further characterised by Size Exclusion Chromatography (SEC) and SDS-PAGE. From these experiments we were able to confirm the valid functionality of our parts, as they were experimentally expressed and purified, and confirmed to self-assemble as designed.
Special Part | Part Number | Part Type | Description | Designer | Length |
---|---|---|---|---|---|
Basic Part | BBa_K2710000 | Coding | His-Alpha Prefoldin | Brian Ee | 456 |
BBa_K2710001 | Coding | His-Beta Prefoldin | Brian Ee | 396 | |
BBa_K2710002 | Coding | His-Alpha Prefoldin with SpyCatcher | Brian Ee | 822 | |
BBa_K2710003 | Coding | His-Beta Prefoldin with SnoopCatcher | Brian Ee | 759 | |
Improved Part | BBa_K2710005 | Coding | His-IaaH with SpyTag | Brian Ee | 1497 |