Difference between revisions of "Team:Edinburgh OG/Improve"

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         <td>The phasin autoregulation system </td>
 
         <td>The phasin autoregulation system </td>
 
         <td>552bp</td>
 
         <td>552bp</td>
−
         <td> Source of sequence :<a href="http://mic.microbiologyresearch.org/content/journal/micro/10.1099/00221287-148-8-2413#tab2">Regulation of phasin expression and polyhydroxyalkanoate (PHA) granule formation in Ralstonia eutropha H16.</a> and NCBI (No further indication). No codon optimisation for <em>E.coli</em>.</td>  
+
         <td> Source of sequence :<a href="http://mic.microbiologyresearch.org/content/journal/micro/10.1099/00221287-148-8-2413#tab2">Regulation of phasin expression and polyhydroxyalkanoate (PHA) granule formation in Ralstonia eutropha H16 (2002)</a> and NCBI (No further indication). No codon optimisation for <em>E.coli</em>.</td>  
 
       </tr>
 
       </tr>
 
     </tbody>
 
     </tbody>
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         <td>The native promoter and RBS of phasin autoregulation system </td>
 
         <td>The native promoter and RBS of phasin autoregulation system </td>
 
         <td>234bp</td>
 
         <td>234bp</td>
−
         <td> Source of sequence :<a href="http://mic.microbiologyresearch.org/content/journal/micro/10.1099/00221287-148-8-2413#tab2">Regulation of phasin expression and polyhydroxyalkanoate (PHA) granule formation in Ralstonia eutropha H16.</a> and NCBI (No further indication). No codon optimisation for <em>E.coli</em>.</td>  
+
         <td> Source of sequence :<a href="http://mic.microbiologyresearch.org/content/journal/micro/10.1099/00221287-148-8-2413#tab2">Regulation of phasin expression and polyhydroxyalkanoate (PHA) granule formation in Ralstonia eutropha H16 (2002)</a> and NCBI (No further indication). No codon optimisation for <em>E.coli</em>.</td>  
 
       </tr>
 
       </tr>
 
     </tbody>
 
     </tbody>
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<blockquote>
 
<blockquote>
 
 
−
<p style="text-align: justify;">The function part of the promoter is more properly selected and The coding sequence of PhaR is codon optimised to E.coli</p>
+
<p style="text-align: justify;">The sequence of PhaR promoter is more properly selected in comparison with the previous parts. Previous publication: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3570403/">Monitoring and kinetic analysis of the molecular interactions by which a repressor protein, PhaR, binds to target DNAs and poly[(R)-3-hydroxybutyrate] (2013) </a> is served as reference guideline and the selected functional promoter sequence is 134 shorter than the previous part. The coding sequence of PhaR is codon optimised to E.coli via IDT</p>
 
 
 
</blockquote>
 
</blockquote>

Revision as of 21:59, 16 October 2018

PhagED: a molecular toolkit to re-sensitise ESKAPE pathogens

 

 

 

 

 

Our Best Improved Part ! ! !
Registry Number Brief Description Key Details Length Sequence information
BBa_K2739000 ProR-PhaR The phasin autoregulation system with native promoter 658bp Original Sequence obtained from: NCBI(AM260479.1). Sequence is codon optimised for E.coli.
Previous Parts
BBa_K108015 PhaR (From previous team) The phasin autoregulation system 552bp Source of sequence :Regulation of phasin expression and polyhydroxyalkanoate (PHA) granule formation in Ralstonia eutropha H16 (2002) and NCBI (No further indication). No codon optimisation for E.coli.
BBa_K108014 ProP (From previous team) The native promoter and RBS of phasin autoregulation system 234bp Source of sequence :Regulation of phasin expression and polyhydroxyalkanoate (PHA) granule formation in Ralstonia eutropha H16 (2002) and NCBI (No further indication). No codon optimisation for E.coli.

The sequence of PhaR promoter is more properly selected in comparison with the previous parts. Previous publication: Monitoring and kinetic analysis of the molecular interactions by which a repressor protein, PhaR, binds to target DNAs and poly[(R)-3-hydroxybutyrate] (2013) is served as reference guideline and the selected functional promoter sequence is 134 shorter than the previous part. The coding sequence of PhaR is codon optimised to E.coli via IDT

This composite part has allow us to investigate A) its relation in PHA production through PHA operon B) its function on PHA production with Phasin C) Assess the secretion function of Phasin-HlyA is compatible with phaR and if the improvement of phaR of PHA production is remained in this parts composition.