Difference between revisions of "Team:Montpellier/Perspectives"

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<h1> Perspectives of the project </h1>
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<h1>Perspectives</h1>
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<p>Engineered microbes are on the way to be the next generation of therapeutics working in the human body. Synthetic biology researchers aim at developing tools to reach this goal in the future years. Our project is in the frame of such research and still at the beginning of what a bacteria-driven contraception could be. Hence, the need for more research about this subject that we will be discussing in this section.</p>
  
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<h2> Vulgarisation of the project </h2>
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<h2>Next experiments</h2><hr/>
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<p> We wanted to choose this project because, it is often dificult for women to talk freely about their contraception issues or issues related to the vaginal microbiota. Moreover a lot of personn do not the importance of the vaginal microbiota for a healthy vagina.
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<p>For our project we imagined and designed lot of experiments that we wanted to do. We were not able to conduct all of them because of lack of time, so we are presenting what would be the next steps of our project.</p>
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Throught this project we wanted to open the discussion around this issues through synthetic biology but also through art and education.  
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<h2> New applications in medecine </h2>
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<p>While a great deal of recent research has focused on the important of the gut microbiota there is a lack of knowledge and research about the specific requirements of its vaginal counterpart.</p>
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<h4>Antibodies</h4>
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<p>A better understanding of the vaginal microbiota could would help us to better understand many diseases and develop new tools and treatments for women.</p>
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<p>The produced antibodies could be purified to check if they are produced and secreted. Purification with the E-tag on the antibodies could give information about the quantity that bacteria produce and secrete. The experiment with he purified antibodies on sperm could tell which quantity is needed to fully inhibit sperm motility which is very important for the future of the project.</p>
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<p> For example, some of the peptides that we studied have great properties such as anti HIV action. </p>
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<p>Another important thing about the antibodies is that the exact mechanisms of their actions are not known yet. Understanding how the antibodies work and where they are fixed on the sperm could be interesting, and should be compared to the literature [1].</p>
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<h4>Peptides</h4>
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<p>The experiments detailed on the <a class="lien" href="https://2018.igem.org/Team:Montpellier/Demonstrate" target="_blank">sperm motility assay</a> could be applied to other peptides. We designed sequences for lacticin and subtilosin but other peptides could be studied such as nisin for example. The sequences could be designed and cloned, as we did for LL-37, and the products tested on sperm as we did for nisin. Those experiments could tell which ones are the easiest to produce and  the most efficient.</p>
 +
 
 +
<h2>Next steps of the project</h2><hr/>
 +
 
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<p>For our project a lot of additional steps are necessary before being able to create a contraception method. We present here some of the next steps that should be done to continue the project.</p>
 +
 
 +
<p>First, one important matter to keep in mind is that in our case we worked on mice sperm (the reasons are discussed <a class="lien" href="https://2018.igem.org/Team:Montpellier/Ethics" target="_blank">here</a>). But for contraception all products should be tested on human sperm. The peptides and antibodies that we designed and used are proven to be working for human spermatozoa.</p>
 +
 
 +
<p>The vector should, in the future, be integrated to the chromosome. This could limit horizontal gene transfers of the spermicidal coding sequence and also of the antibiotic resistance gene. Furthermore, in absence of antibiotic selection, there is an high probability that the bacteria gets rid of the plasmid and inserting the sequences in the chromosome could avoid this.</p>
 +
 
 +
<p>Another interesting experiment to do would be to test the efficiency of each protein regarding their concentration, like it has been done for nisin [2]. The results of the experiment could be compared with experiments showing which molecules is the easiest one to produce to find which protein is the best candidate for this kind of contraception method. Other experimental procedures that are important for choosing the right protein are to study the production over time, the interaction between the product and the flora, and also the potential interaction with the human immune system.</p>
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<p>Moreover, a major aspect of this project and the main concern of people is how to stop the contraceptive effect and make sure there will not be any dissemination. We worked on those aspects throughout <a class="lien" href="https://2018.igem.org/Team:Montpellier/Human_Practices" target="_blank">bibliography research</a>. They are a lot of switch mechanisms already existing and that are possible to use for this application [3][4][5]. In the future, the use of multiple switches would probably be the best answer to this problem. The next step would be to search which mechanisms are usable in Lactobacilli and test them in a vaginal like environment.
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<p>Finally, we think it is important to mention that the work on Lactobacillus jensenii should not be restricted to contraception application. Indeed, the work on the vaginal flora could lead to different kind of projects. Research about therapeutic applications of the microbiome engineering already exists and the possibilities can be disparate [6][7]. We hope the development of the toolbox for <i>L. jensenii</i> can help other laboratories to work with the strain for different applications.</p>
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<p>We believe that our work is a first stone to the study of the vaginal microbiota and the development of a new contraceptive method. We hope that this work will be pursued in Montpellier and by other laboratories to permit the further development of our project.</p>
  
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<h2> Modified bacteria in a human body ? </h2>
 
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<p>Our project is very ambitious, and we know that a project like this is not for today, and we have to continue the researchs about the modified bacterias in a human body.</p> 
 
 
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<section class="references" id="references">
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  <table class="references_table">
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      <th class="references_title" colspan="2">References</th>
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      <td class="references_left">[1]</td>
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      <td class="references_right">Samuel, A. S., & Naz, R. K. 2008. Isolation of human single chain variable fragment antibodies against specific sperm antigens for immunocontraceptive development. <i>Human reproduction</i>, 23(6), 1324-1337.</td>
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      <td class="references_left">[2]</td>
 +
      <td class="references_right">Aranha, C., Gupta, S., & Reddy, K. V. R. 2004. Contraceptive efficacy of antimicrobial peptide Nisin: in vitro and in vivo studies. <i>Contraception</i>, 69(4), 333-338.</td>
 +
    </tr>
 +
    <tr>
 +
      <td class="references_left">[3]</td>
 +
      <td class="references_right">Bojar, D., Scheller, L., Charpin-El Hamri, G., Xie, M., & Fussenegger, M. 2018. Caffeine-inducible gene switches controlling experimental diabetes. <i>Nature Communications</i>, 9(1), 2318.</td>
 +
    </tr>
 +
    <tr>
 +
      <td class="references_left">[4]</td>
 +
      <td class="references_right">Rovner, A. J., Haimovich, A. D., Katz, S. R., Li, Z., Grome, M. W., Gassaway, B. M., ... & Isaacs, F. J. 2015. Recoded organisms engineered to depend on synthetic amino acids. <i>Nature</i>, 518(7537), 89.</td>
 +
    </tr>
 +
    <tr>
 +
      <td class="references_left">[5]</td>
 +
      <td class="references_right">Mandell, D. J., Lajoie, M. J., Mee, M. T., Takeuchi, R., Kuznetsov, G., Norville, J. E., ... & Church, G. M. 2015. Biocontainment of genetically modified organisms by synthetic protein design. <i>Nature</i>, 518(7537), 55.</td>
 +
    </tr>
 +
    <tr>
 +
      <td class="references_left">[6]</td>
 +
      <td class="references_right">Marcobal, A., Liu, X., Zhang, W., Dimitrov, A. S., Jia, L., Lee, P. P., ... & Lagenaur, L. A. 2016. Expression of human immunodeficiency virus type 1 neutralizing antibody fragments using human vaginal <i>Lactobacillus</i>. <i>AIDS research and human retroviruses</i>, 32(10-11), 964-971.</td>
 +
    </tr>
 +
    <tr>
 +
      <td class="references_bottom_left">[7]</td>
 +
      <td class="references_bottom_right">Liu, X., Lagenaur, L. A., Simpson, D. A., Essenmacher, K. P., Frazier-Parker, C. L., Liu, Y., ... & Lee, P. P. 2006. Engineered vaginal lactobacillus strain for mucosal delivery of the human immunodeficiency virus inhibitor cyanovirin-N. <i>Antimicrobial agents and chemotherapy</i>, 50(10), 3250-3259.</td>
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    </tr>
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  </table>
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{{Montpellier/Footer}}
 
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Revision as of 21:23, 14 October 2018

Perspectives

Engineered microbes are on the way to be the next generation of therapeutics working in the human body. Synthetic biology researchers aim at developing tools to reach this goal in the future years. Our project is in the frame of such research and still at the beginning of what a bacteria-driven contraception could be. Hence, the need for more research about this subject that we will be discussing in this section.

Next experiments

For our project we imagined and designed lot of experiments that we wanted to do. We were not able to conduct all of them because of lack of time, so we are presenting what would be the next steps of our project.

Antibodies

The produced antibodies could be purified to check if they are produced and secreted. Purification with the E-tag on the antibodies could give information about the quantity that bacteria produce and secrete. The experiment with he purified antibodies on sperm could tell which quantity is needed to fully inhibit sperm motility which is very important for the future of the project.

Another important thing about the antibodies is that the exact mechanisms of their actions are not known yet. Understanding how the antibodies work and where they are fixed on the sperm could be interesting, and should be compared to the literature [1].

Peptides

The experiments detailed on the sperm motility assay could be applied to other peptides. We designed sequences for lacticin and subtilosin but other peptides could be studied such as nisin for example. The sequences could be designed and cloned, as we did for LL-37, and the products tested on sperm as we did for nisin. Those experiments could tell which ones are the easiest to produce and the most efficient.

Next steps of the project

For our project a lot of additional steps are necessary before being able to create a contraception method. We present here some of the next steps that should be done to continue the project.

First, one important matter to keep in mind is that in our case we worked on mice sperm (the reasons are discussed here). But for contraception all products should be tested on human sperm. The peptides and antibodies that we designed and used are proven to be working for human spermatozoa.

The vector should, in the future, be integrated to the chromosome. This could limit horizontal gene transfers of the spermicidal coding sequence and also of the antibiotic resistance gene. Furthermore, in absence of antibiotic selection, there is an high probability that the bacteria gets rid of the plasmid and inserting the sequences in the chromosome could avoid this.

Another interesting experiment to do would be to test the efficiency of each protein regarding their concentration, like it has been done for nisin [2]. The results of the experiment could be compared with experiments showing which molecules is the easiest one to produce to find which protein is the best candidate for this kind of contraception method. Other experimental procedures that are important for choosing the right protein are to study the production over time, the interaction between the product and the flora, and also the potential interaction with the human immune system.

Moreover, a major aspect of this project and the main concern of people is how to stop the contraceptive effect and make sure there will not be any dissemination. We worked on those aspects throughout bibliography research. They are a lot of switch mechanisms already existing and that are possible to use for this application [3][4][5]. In the future, the use of multiple switches would probably be the best answer to this problem. The next step would be to search which mechanisms are usable in Lactobacilli and test them in a vaginal like environment.

Finally, we think it is important to mention that the work on Lactobacillus jensenii should not be restricted to contraception application. Indeed, the work on the vaginal flora could lead to different kind of projects. Research about therapeutic applications of the microbiome engineering already exists and the possibilities can be disparate [6][7]. We hope the development of the toolbox for L. jensenii can help other laboratories to work with the strain for different applications.

We believe that our work is a first stone to the study of the vaginal microbiota and the development of a new contraceptive method. We hope that this work will be pursued in Montpellier and by other laboratories to permit the further development of our project.

References
[1] Samuel, A. S., & Naz, R. K. 2008. Isolation of human single chain variable fragment antibodies against specific sperm antigens for immunocontraceptive development. Human reproduction, 23(6), 1324-1337.
[2] Aranha, C., Gupta, S., & Reddy, K. V. R. 2004. Contraceptive efficacy of antimicrobial peptide Nisin: in vitro and in vivo studies. Contraception, 69(4), 333-338.
[3] Bojar, D., Scheller, L., Charpin-El Hamri, G., Xie, M., & Fussenegger, M. 2018. Caffeine-inducible gene switches controlling experimental diabetes. Nature Communications, 9(1), 2318.
[4] Rovner, A. J., Haimovich, A. D., Katz, S. R., Li, Z., Grome, M. W., Gassaway, B. M., ... & Isaacs, F. J. 2015. Recoded organisms engineered to depend on synthetic amino acids. Nature, 518(7537), 89.
[5] Mandell, D. J., Lajoie, M. J., Mee, M. T., Takeuchi, R., Kuznetsov, G., Norville, J. E., ... & Church, G. M. 2015. Biocontainment of genetically modified organisms by synthetic protein design. Nature, 518(7537), 55.
[6] Marcobal, A., Liu, X., Zhang, W., Dimitrov, A. S., Jia, L., Lee, P. P., ... & Lagenaur, L. A. 2016. Expression of human immunodeficiency virus type 1 neutralizing antibody fragments using human vaginal Lactobacillus. AIDS research and human retroviruses, 32(10-11), 964-971.
[7] Liu, X., Lagenaur, L. A., Simpson, D. A., Essenmacher, K. P., Frazier-Parker, C. L., Liu, Y., ... & Lee, P. P. 2006. Engineered vaginal lactobacillus strain for mucosal delivery of the human immunodeficiency virus inhibitor cyanovirin-N. Antimicrobial agents and chemotherapy, 50(10), 3250-3259.

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