Difference between revisions of "Team:Lambert GA/Attributions"

 
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<p>This page is used by the judges to evaluate your team for the <a href="https://2018.igem.org/Judging/Medals">medal criterion</a> or <a href="https://2018.igem.org/Judging/Awards"> award listed below</a>. </p>
 
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              A T T R I B U T I O N S
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<br><br><br>
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<h1>Attributions</h1>
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<br><br><br>
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<p>This page is your opportunity to explain what parts of your project you did and what was done by technicians, advisers, etc. This requirement is not about literature references - these can and should be displayed throughout your wiki.
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<h3> Bronze Medal Criterion #3</h3>
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<p> All of the work done in your project must be attributed correctly on this page. You must clearly state the work that was done by the students on your team and note any work that was done by people outside of your team, including the host labs, advisors, instructors, and individuals not on the team roster.  
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      <div id="sidebar">
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                      <div id="link">
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                            <b><a style="color:black; text-decoration: none; line-height:1.1;" href="#target1">RESEARCHERS</a></b>
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<br><br>
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                            <b><a style="color:black; text-decoration: none; line-height:1.1;" href="#target2">PROJECT FOUNDATION</a></b>
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                            <b><a style="color:black; text-decoration: none; line-height:1.1;" href="#target3">SUPPORT</a></b>
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                      </div>
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<br><br>
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                      <div id="link">
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                            <b><a style="color:black; text-decoration: none; line-height:1.1;" href="#target4">REFERENCES</a></b>
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                      </div>
 
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Please see the <a href="https://2018.igem.org/Judging/Medals">Medals requirements page</a> for more details.</p>
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<b>Researchers</b>
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<br><br>
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<div id="content2">
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<center>
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<table>
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<tr>
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<th>Abby Bell <br> <i>Wet Lab</i></th>
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<th>Annie Pei<br> <i>Human Practices</i></th>
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<th>Ashtyn Cauffman <br> <i>Human Practices</i></th>
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<th>Christina Lee<br> <i>Human Practices</i></th>
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</tr>
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<tr>
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<th>Courtney Taing<br> <i>Human Practices</i></th>
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<th>Ellie Kim<br> <i>Wet Lab</i></th>
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<th>Gaurav Byagathvalli<br> <i>ElectroPen</i></th>
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<th>Katie Barr<br> <i>Wet Lab</i></th>
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</tr>
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<th>Kevin Li<br> <i>Wiki</i></th>
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<th>Krishi Kishore<br> <i>Software</i></th>
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<th>Megan Hong<br> <i>Wet Lab</i></th>
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<th>Michelle Wu<br> <i>Human Practices</i></th>
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</tr>
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<tr>
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<th>Nithik Balachandran<br> <i>Wiki</i></th>
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<th>Rohil Badkundri<br> <i>CALM Lead</i></th>
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<th>Sahil Jain<br> <i>Software</i></th>
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<th>Sai Mettupalli<br> <i>Hardware</i></th>
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</tr>
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<tr>
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<th>Shanthi Hegde<br> <i>Graphic Design</i></th>
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<th>Srikusumanjali Pinnamareddy<br> <i>CALM</i></th>
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<th>Tapasya Katta<br> <i>Human Practices</i></th>
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<th>Victor Valbuena<br> <i>CALM</i></th>
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</tr>
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</table>
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</center>
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<b>Project Foundation</b>
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</div>
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<br><br>
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<div id="content2">
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This year's project toehold switch circuit design was a result of collaborative discussions with Dr. Styczysnki, Ms. Zhang and Ms. McNerney from Georgia Institute of Technology. Lambert iGEM worked extensively with third parties for this year's project, and we would like to offer our most sincere thanks for their help. Attributions are listed below by subproject.
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</div>
  
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<div class="column third_size">
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<br><br>
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<h3> What should this page contain?</h3>
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<div id="target3"></div>
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<div id="subheading1"><b>Support</b></div>
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<br><br>
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<div id="content2">
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<b style="font-size:20px;">Scientific</b>
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<br>
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<ul>
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<li>Dr. Mark Styczynski from Georgia Institute of Technology</li>
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<li>Dr. Saad Bhamla from Georgia Institute of Technology</li>
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<li>Ms. Yan Zhang from Georgia Institute of Technology</li>
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<li>Ms. Monica McNerney from Georgia Institute of Technology</li>
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</ul>
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<br>
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Dr. Styczynski, Dr. Bhamla, Ms. Zhang and Ms. McNerney have assisted Lambert iGEM throughout their project by acting as mentors. They have helped the team troubleshoot and revise its project, constantly providing advice to improve it. In addition, they have generously provided materials that a high school team would not have access to. We would like to thank them for helping us complete our project.
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<br><br>
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<b style="font-size:20px;">Parts</b>
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<br>
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<ul>
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<li>Sequences and initial DNA from Styczynski Lab at Georgia Tech</li>
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<li>Snapgene- software for sequence analysis</li>
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<li>IDT-Generous DNA synthesis</li>
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</ul>
  
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<br><br>
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<b style="font-size:20px;">CALM Model</b>
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<br>
 
<ul>
 
<ul>
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<li>Clearly state what the team accomplished</li>
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<li>The AI Day One Challenge, coordinated by Mr. Scott Henderson through Sandbox ATL, also allowing Lambert iGEM to meet with the following:</li>
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<li>General Support</li>
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<li>Dr. Eric Mintz</li>
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<li>Project support and advice</li>
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<li>Mr. Chris Waites</li>
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<li>Fundraising help and advice</li>
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<li>Mr. Luigi Ray-Montanez</li>
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<li>Lab support</li>
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<li>Mr. Jackson Morgan</li>
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<li>Difficult technique support</li>
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<li>Mr. TJ Muehlemen</li>
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<li>Project advisor support</li>
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<li>Mr. Shane Matthews</li>
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<li>Wiki support</li>
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<li>Mr. Michael Koohang</li>
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<li>Presentation coaching</li>
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<li>Mrs. Alexa Morse</li>
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<li>Human Practices support</li>
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<li>Mr. Greg Torre</li>
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<li> Thanks and acknowledgements for all other people involved in helping make a successful iGEM team</li>
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<li>Mr. Daniel Youmans</li>
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<li>Ms. Winne Luo</li>
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<li>Tanishk Sinha (a student at Lambert High School)
 
</ul>
 
</ul>
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</div>
 
  
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<div class="column third_size">
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<br><br>
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<p>Tell us if your institution teaches an iGEM or synthetic biology class and when you started your project:</p>
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<b style="font-size:20px;">ElectroPen</b>
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<br>
 
<ul>
 
<ul>
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<li>Does your institution teach an iGEM or synthetic biology course?</li>
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<li>The ElectroPen project would not have been possible without our collaboration with the Bhamla Lab at the Georgia Institute of Technology:</li>
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<li>When did you start this course?</li>
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<li>Dr. Saad Bhamla</li>
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<li>Are the syllabus and course materials freely available online?</li>
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<li>Soham Sinha</li>
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<li>When did you start your brainstorming?</li>
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<li>When did you start in the lab?</li>
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<li>When did you start working on  your project?</li>
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</ul>
 
</ul>
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</div>
 
  
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<br><br>
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<b style="font-size:20px;">Advisor</b>
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<br>
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<ul>
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<li>Mrs. Standeven</li>
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<li>Dr. Cantrell</li>
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</ul>
  
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<div class="column third_size">
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<br><br>
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<div class="highlight decoration_A_full">
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<b style="font-size:20px;">Outreach</b>
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<br>
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<ul>
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<li>Dr. Rainyer- Dominican Republic</li>
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<li>Girl Scout Troops</li>
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<li>Riverwatch and South Forsyth Middle Schools</li>
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<li>Atlanta Science Festival</li>
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<li>University of Georgia (UGA) iGEM Team</li>
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<li>Georgia State University (GSU) iGEM </li>
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<li>Emory University iGEM </li>
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<li>TASTaipei iGEM </li>
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</ul>
  
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<h3>Inspiration</h3>
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<br><br>
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<p>Take a look at what other teams have done:</p>
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<b style="font-size:20px;">Community</b>
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<br>
 
<ul>
 
<ul>
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<li><a href="https://2011.igem.org/Team:Imperial_College_London/Team">2011 Imperial College London</a> (scroll to the bottom)</li>
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<li>Open House- family members, local business owners and professionals</li>
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<li><a href="https://2014.igem.org/Team:Exeter/Attributions">2014 Exeter </a></li>
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<li>Lambert Administrators and teachers</li>
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<li><a href="https://2014.igem.org/Team:Melbourne/Attributions">2014 Melbourne </a></li>
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<li>Dr. Christian Epe, Dr. Sammy Bell,  Dr. Marcus Terneus, Dr. Dave Lowery, Dr. Tong and Boeheim Ingelheim Animal Health R&D</li>
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<li><a href="https://2014.igem.org/Team:Valencia_Biocampus/Attributions">2014 Valencia Biocampus</a></li>
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</ul>
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<br><br>
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<b style="font-size:20px;">Fundraising and Financial Support</b>
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<br>
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<ul>
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<li>National Science Foundation Grant #1254382</li>
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<li>Johns Creek Chipotle</li>
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<li>Teen Arnold</li>
 +
<li>Gibson Software</li>
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</ul>
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<br><br>
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<b style="font-size:20px;">Presentation</b>
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<br>
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<ul>
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<li>Dr. Christian Epe, Dr. Sammy Bell,  Dr. Marcus Terneus, Dr. Dave Lowery, and Dr. Tong from Boeheim Ingelheim</li>
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<li>Mike Gibson from Gibson Software</li>
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<li>Mark Styzinski, Yan Zhang, and Saad Bhamla from Georgia Tech</li>
 +
<li>Paul Standeven from Philips Healthcare North America</li>
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<li>Dr. Dana Boyd Barr, Dr. P. Barry Ryan, Dr. Christine L Moe, and Dr. Parinya Panuwet from Emory Healthcare</li>
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<li>Dr. Davison, Principal Lambert High School</li>
 
</ul>
 
</ul>
 
</div>
 
</div>
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<br><br>
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<div id="target4"></div>
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<div id="subheading2"><b>References</b></div>
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<br><br>
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<div id="content2">
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[1] Wholey, W. Y., & Jakob, U. (2012, March). Hsp33 confers bleach resistance by protecting elongation factor Tu against oxidative degradation in Vibrio cholerae. Retrieved October 8, 2018, from https://www.ncbi.nlm.nih.gov/pubmed/22296329
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<br>
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[2] Cholera - Vibrio cholerae infection. (2018, July 20). Retrieved October 8, 2018, from https://www.cdc.gov/cholera/diagnosis.html
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<br>
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[3] Nelson, E. J., Harris, J. B., Morris, J. G., Calderwood, S. B., & Camilli, A. (2009, October). Cholera transmission: The host, pathogen and bacteriophage dynamic. Retrieved October 8, 2018, from https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3842031/
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<br>
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[4] Kaye N. Ballantyne, Renato Salemi, Fabio Guarino, James R. Pearson, Dale Garlepp, Stephen Fowler & Roland A.H. van Oorschot (2015) DNA contamination minimisation – finding an effective cleaning method, Australian Journal of Forensic Sciences, 47:4, 428-439, DOI: <u>10.1080/00450618.2015.1004195</u>
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<br>
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[5] 10.3 - Sensitivity, Specificity, Positive Predictive Value, and Negative Predictive Value. (2018). Retrieved October 8, 2018, from https://onlinecourses.science.psu.edu/stat507/node/71/
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<br>
 +
[6] Cholera - Vibrio cholerae infection. (2018, July 20). Retrieved from https://www.cdc.gov/cholera/diagnosis.html
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<br>
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[7] Nelson, E. J., Harris, J. B., Morris, J. G., Calderwood, S. B., & Camilli, A. (2009, October). Cholera transmission: The host, pathogen and bacteriophage dynamic. Retrieved October 8, 2018, from https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3842031/
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<br>
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[8] Bjerketorp, J., Håkansson, S., Belkin, S., & Jansson, J. K. (2006, February). Advances in preservation methods: Keeping biosensor microorganisms alive and active. Retrieved October 8, 2018, from https://www.ncbi.nlm.nih.gov/pubmed/16368231
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<br>
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[9] <i>EXAMINATION OF FOOD AND ENVIRONMENTAL SAMPLES</i> [PDF]. (n.d.). Centers for Disease Control.London School of Hygiene & Tropical Medicine. (2018, May 03). Upcoming rainy season likely to trigger renewed cholera outbreak in Yemen. Retrieved from https://www.lshtm.ac.uk/newsevents/news/2018/upcoming-rainy-season-likely-trigger-renewed-cholera-outbreak-yemen
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<br>
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[10] Drinking-water. (2018, February 7). Retrieved from http://www.who.int/news-room/fact- sheets/detail/drinking-water
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(n.d.). Retrieved from http://www.who.int/water_sanitation_health/takingcharge.html
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<br>
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[11] Berman, J. (2009, October 29). WHO: Waterborne Disease is World's Leading Killer. Retrieved from https://www.voanews.com/a/a-13-2005-03-17-voa34-67381152/274768.html
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<br>
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[12] Learn How to Use the Crystal VC Dipstick Test to Detect Vibrio Cholera in Our New Video | DOVE: Stop Cholera. (n.d.). Retrieved from https://www.stopcholera.org/blog/learn-how-use-crystal-vc-dipstick-test-detect-vibrio-cholera-our-new-video
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<br>
 +
[13] Cholera - Vibrio cholerae infection. (2018, May 14). Retrieved from https://www.cdc.gov/cholera/diagnosis.html
 +
<br>
 +
[14]The Burden of Soil-transmitted Helminths (STH). (2011, June 06). Retrieved from https://www.cdc.gov/globalhealth/ntd/diseases/sth_burden.html
 +
<br>
 +
[15] Water. (2016, April 22). Retrieved from https://www.cdc.gov/parasites/water.html
 +
<br>
 +
[16] Collender, P. A., Kirby, A. E., Addiss, D. G., Freeman, M. C., & Remais, J. V. (2015, December). Retrieved from https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4679500/
 +
<br>
 +
[17] Action Against Worms. (2008, February). Retrieved from http://www.who.int/neglected_diseases/preventive_chemotherapy/pctnewsletter11.pdf
 +
<br>
 +
[18] Pilotte, N., Papaiakovou, M., Grant, J. R., Bierwert, L. A., Llewellyn, S., McCarthy, J. S., & Williams, S. A. (n.d.). Improved PCR-Based Detection of Soil Transmitted Helminth Infections Using a Next-Generation Sequencing Approach to Assay Design. Retrieved from http://journals.plos.org/plosntds/article?id=10.1371/journal.pntd.0004578
 +
<br>
 +
[19] <i>Detection of Cholera Toxin</i> [PDF]. (n.d.). Atlanta: Centers for Disease Control and Prevention.
 +
https://www.cdc.gov/cholera/pdf/laboratory-methods-for-the-diagnosis-of-vibrio-cholerae-chapter-7.pdf
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Latest revision as of 21:26, 2 November 2018

CALM ELECTROPEN
BACKGROUND DATA & METHODS RESULTS DISCUSSION COLOR Q SUPPLEMENTARY REFERENCES
COLOR Q CHROME Q REFERENCES
PRINCIPLES & DESIGN MODEL & THEORY PRODUCT DESIGN REFERENCES
INTEGRATED HUMAN PRACTICES EDUCATION & ENGAGEMENT COLLABORATIONS
BASIC PARTS COMPOSITE PARTS
DESCRIPTION BACKGROUND DESIGN EXPERIMENTS LAB NOTEBOOK INTERLAB RESULTS DEMONSTRATE THE VISION
TEAM MEMBERS ATTRIBUTIONS

A T T R I B U T I O N S



































Researchers


Abby Bell
Wet Lab		 Annie Pei
Human Practices		 Ashtyn Cauffman
Human Practices		 Christina Lee
Human Practices
Courtney Taing
Human Practices		 Ellie Kim
Wet Lab		 Gaurav Byagathvalli
ElectroPen		 Katie Barr
Wet Lab
Kevin Li
Wiki		 Krishi Kishore
Software		 Megan Hong
Wet Lab		 Michelle Wu
Human Practices
Nithik Balachandran
Wiki		 Rohil Badkundri
CALM Lead		 Sahil Jain
Software		 Sai Mettupalli
Hardware
Shanthi Hegde
Graphic Design		 Srikusumanjali Pinnamareddy
CALM		 Tapasya Katta
Human Practices		 Victor Valbuena
CALM


Project Foundation


This year's project toehold switch circuit design was a result of collaborative discussions with Dr. Styczysnki, Ms. Zhang and Ms. McNerney from Georgia Institute of Technology. Lambert iGEM worked extensively with third parties for this year's project, and we would like to offer our most sincere thanks for their help. Attributions are listed below by subproject.


Support


Scientific
  • Dr. Mark Styczynski from Georgia Institute of Technology
  • Dr. Saad Bhamla from Georgia Institute of Technology
  • Ms. Yan Zhang from Georgia Institute of Technology
  • Ms. Monica McNerney from Georgia Institute of Technology

Dr. Styczynski, Dr. Bhamla, Ms. Zhang and Ms. McNerney have assisted Lambert iGEM throughout their project by acting as mentors. They have helped the team troubleshoot and revise its project, constantly providing advice to improve it. In addition, they have generously provided materials that a high school team would not have access to. We would like to thank them for helping us complete our project.

Parts
  • Sequences and initial DNA from Styczynski Lab at Georgia Tech
  • Snapgene- software for sequence analysis
  • IDT-Generous DNA synthesis


CALM Model
  • The AI Day One Challenge, coordinated by Mr. Scott Henderson through Sandbox ATL, also allowing Lambert iGEM to meet with the following:
  • Dr. Eric Mintz
  • Mr. Chris Waites
  • Mr. Luigi Ray-Montanez
  • Mr. Jackson Morgan
  • Mr. TJ Muehlemen
  • Mr. Shane Matthews
  • Mr. Michael Koohang
  • Mrs. Alexa Morse
  • Mr. Greg Torre
  • Mr. Daniel Youmans
  • Ms. Winne Luo
  • Tanishk Sinha (a student at Lambert High School)


ElectroPen
  • The ElectroPen project would not have been possible without our collaboration with the Bhamla Lab at the Georgia Institute of Technology:
  • Dr. Saad Bhamla
  • Soham Sinha


Advisor
  • Mrs. Standeven
  • Dr. Cantrell


Outreach
  • Dr. Rainyer- Dominican Republic
  • Girl Scout Troops
  • Riverwatch and South Forsyth Middle Schools
  • Atlanta Science Festival
  • University of Georgia (UGA) iGEM Team
  • Georgia State University (GSU) iGEM
  • Emory University iGEM
  • TASTaipei iGEM


Community
  • Open House- family members, local business owners and professionals
  • Lambert Administrators and teachers
  • Dr. Christian Epe, Dr. Sammy Bell, Dr. Marcus Terneus, Dr. Dave Lowery, Dr. Tong and Boeheim Ingelheim Animal Health R&D


Fundraising and Financial Support
  • National Science Foundation Grant #1254382
  • Johns Creek Chipotle
  • Teen Arnold
  • Gibson Software


Presentation
  • Dr. Christian Epe, Dr. Sammy Bell, Dr. Marcus Terneus, Dr. Dave Lowery, and Dr. Tong from Boeheim Ingelheim
  • Mike Gibson from Gibson Software
  • Mark Styzinski, Yan Zhang, and Saad Bhamla from Georgia Tech
  • Paul Standeven from Philips Healthcare North America
  • Dr. Dana Boyd Barr, Dr. P. Barry Ryan, Dr. Christine L Moe, and Dr. Parinya Panuwet from Emory Healthcare
  • Dr. Davison, Principal Lambert High School


References


[1] Wholey, W. Y., & Jakob, U. (2012, March). Hsp33 confers bleach resistance by protecting elongation factor Tu against oxidative degradation in Vibrio cholerae. Retrieved October 8, 2018, from https://www.ncbi.nlm.nih.gov/pubmed/22296329
[2] Cholera - Vibrio cholerae infection. (2018, July 20). Retrieved October 8, 2018, from https://www.cdc.gov/cholera/diagnosis.html
[3] Nelson, E. J., Harris, J. B., Morris, J. G., Calderwood, S. B., & Camilli, A. (2009, October). Cholera transmission: The host, pathogen and bacteriophage dynamic. Retrieved October 8, 2018, from https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3842031/
[4] Kaye N. Ballantyne, Renato Salemi, Fabio Guarino, James R. Pearson, Dale Garlepp, Stephen Fowler & Roland A.H. van Oorschot (2015) DNA contamination minimisation – finding an effective cleaning method, Australian Journal of Forensic Sciences, 47:4, 428-439, DOI: 10.1080/00450618.2015.1004195
[5] 10.3 - Sensitivity, Specificity, Positive Predictive Value, and Negative Predictive Value. (2018). Retrieved October 8, 2018, from https://onlinecourses.science.psu.edu/stat507/node/71/
[6] Cholera - Vibrio cholerae infection. (2018, July 20). Retrieved from https://www.cdc.gov/cholera/diagnosis.html
[7] Nelson, E. J., Harris, J. B., Morris, J. G., Calderwood, S. B., & Camilli, A. (2009, October). Cholera transmission: The host, pathogen and bacteriophage dynamic. Retrieved October 8, 2018, from https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3842031/
[8] Bjerketorp, J., Håkansson, S., Belkin, S., & Jansson, J. K. (2006, February). Advances in preservation methods: Keeping biosensor microorganisms alive and active. Retrieved October 8, 2018, from https://www.ncbi.nlm.nih.gov/pubmed/16368231
[9] EXAMINATION OF FOOD AND ENVIRONMENTAL SAMPLES [PDF]. (n.d.). Centers for Disease Control.London School of Hygiene & Tropical Medicine. (2018, May 03). Upcoming rainy season likely to trigger renewed cholera outbreak in Yemen. Retrieved from https://www.lshtm.ac.uk/newsevents/news/2018/upcoming-rainy-season-likely-trigger-renewed-cholera-outbreak-yemen
[10] Drinking-water. (2018, February 7). Retrieved from http://www.who.int/news-room/fact- sheets/detail/drinking-water (n.d.). Retrieved from http://www.who.int/water_sanitation_health/takingcharge.html
[11] Berman, J. (2009, October 29). WHO: Waterborne Disease is World's Leading Killer. Retrieved from https://www.voanews.com/a/a-13-2005-03-17-voa34-67381152/274768.html
[12] Learn How to Use the Crystal VC Dipstick Test to Detect Vibrio Cholera in Our New Video | DOVE: Stop Cholera. (n.d.). Retrieved from https://www.stopcholera.org/blog/learn-how-use-crystal-vc-dipstick-test-detect-vibrio-cholera-our-new-video
[13] Cholera - Vibrio cholerae infection. (2018, May 14). Retrieved from https://www.cdc.gov/cholera/diagnosis.html
[14]The Burden of Soil-transmitted Helminths (STH). (2011, June 06). Retrieved from https://www.cdc.gov/globalhealth/ntd/diseases/sth_burden.html
[15] Water. (2016, April 22). Retrieved from https://www.cdc.gov/parasites/water.html
[16] Collender, P. A., Kirby, A. E., Addiss, D. G., Freeman, M. C., & Remais, J. V. (2015, December). Retrieved from https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4679500/
[17] Action Against Worms. (2008, February). Retrieved from http://www.who.int/neglected_diseases/preventive_chemotherapy/pctnewsletter11.pdf
[18] Pilotte, N., Papaiakovou, M., Grant, J. R., Bierwert, L. A., Llewellyn, S., McCarthy, J. S., & Williams, S. A. (n.d.). Improved PCR-Based Detection of Soil Transmitted Helminth Infections Using a Next-Generation Sequencing Approach to Assay Design. Retrieved from http://journals.plos.org/plosntds/article?id=10.1371/journal.pntd.0004578
[19] Detection of Cholera Toxin [PDF]. (n.d.). Atlanta: Centers for Disease Control and Prevention. https://www.cdc.gov/cholera/pdf/laboratory-methods-for-the-diagnosis-of-vibrio-cholerae-chapter-7.pdf