Protein purification

HAD purification (use Immobilized Metal Affinity Chromatography )

HAD cloned in PET system is overexpressed successfully in E.coli

Laccase purification result (use Immobilized Metal Affinity Chromatography )

Laccase cloned in PET system somehow is not overexpressed in E.coli

Arabidopsis

Figure 1.

Morphological effects caused by TCDD on A. thaliana.

(a) Morphological anomalies in A. thaliana as response to TCCD-exposure after 14 days at indicated concentrations (0ppm).

(a) Morphological anomalies in A. thaliana as response to TCCD-exposure after 14 days at indicated concentrations (0.05ppm).

(b) The phenotype of A. thaliana after grow 14 days without TCDD.

(b) The phenotype of A. thaliana after grow 14 days with TCDD.

(c) Four average data with or without TCDD show on A. thaliana .

Figure 2.

Arabidopsis thaliana after 10 days TCDD exposure and Burkholderia cenocepacia 869T2 inoculation.

We analyzed the effects of 2, 3, 7, 8-TCDD on the growth of A. thaliana for 14 days. Morphologically, the roots and leaves of A. thaliana are very different: First, the difference between the control plants(TCDD-) and the experimental plants (TCDD+) is 15 mm. The experimental plants are twice shorter than the control plants. ( Fig. 1a) Second, the experimental plants are smaller and weaker than the control plants. ( Fig. 1b) This information indicated that the existence of TCDD provoked important morphological difference in A. thaliana. In another result of experiment, we also find the roots of the A. thaliana inoculated with Burkholderia cenocepacia 869T2 are particularly different: their roots are short but very strong, their leaves are small but dark green. And the most difference is that inhibit the grow of main roots but enhance the strong lateral roots. ( Fig. 2) This information can be used as a reference in the future.

Figure 3.

The result of inoculating endophytic bacteria in Arabidopsis plants for 7 days.

(a) Burkholderia cenocepacia 869T2 exist for 7 days in A. thaliana.

(b) B. phytofirmans PsJN exist for 7 days in A. thaliana.

(c) B. cenocepacia 869T2 exist for 7 days with 0.05 ppm of TCDD in A. thaliana.

(d) B. phytofirmans PsJN exist for 7 days with 0.05 ppm of TCDD in A. thaliana.

Figure 4.

The result of inoculating endophytic bacteria in Arabidopsis plants for 14 days.

(a) Burkholderia cenocepacia 869T2 exist for 14 days in A. thaliana.

(b) B. phytofirmans PsJN exist for 14 days in A. thaliana.

(c) B. cenocepacia 869T2 exist for 14 days with 0.05 ppm of TCDD in A. thaliana.

(d) B. phytofirmans PsJN exist for 14 days with 0.05 ppm of TCDD in A. thaliana.

We test two endophitic bacteria ( Burkholderia cenocepacia 869T2 and Burkholderia phytofirmans PsJN) how long they exist in Arabidopsis thaliana. In the beginning, we inoculate B. cenocepacia 869T2 and B. phytofirmans PsJN with OD600=0.4 into Arabidopsis plants. On the seventh and fourteenth day, we collect the sample of experiment. Before grinding the plants, we wash them for sterile water and confirm whether we wash the surface bacteria on Arabidopsis plants. Then, we grind the Arabidopsis plants and dilute their liquid with 10 times, and put it to LB plate for 30℃ during a day. After a day, we observe the morphology of a single colony to check the two bacteria. A single colony of B. cenocepacia 869T2 is small, circular, entire, raised, glistening veined, yellow-green, and B. phytofirmans PsJN is very small, circular, entire, raised, rough, white. (the right picture of Fig. 3) The result was consistent with a single colony of two bacteria. Moreover, the washing water does not see any bacteria. (the left picture of Fig. 3) Therefore, no matter which bacteria with or without TCDD plate in Arabidopsis plants they stay, all of two show the endophytic character in Arabidopsis plants.

Screen of HAD activity

We have a substrate called 2-chloropropionic acid (2-CPA) for HAD activity test.HAD can take off chloride anion from the substrate;thus, we can then add silver cation to the solution to form silver chloride,which is white precipitate.When silver chloride is exposed to light,it will become hydrogen gas and silver.Therefore, if the solution contains more chloride anion,the color of silver will be deeper.

Result: our HAD works!!!

Toxicology-Cell Viability Test

MTT assay

Viability of cells was assessed by measuring the formation of a formazan from MTT spectrophotometric assay test, modified after Mosmann’s (1983) study. HEP G2 were incubated with 0.5 mg/mL MTT for 2 hours at 37°C at the end of the experiment. After washing with DMSO, the purple formazan was extracted from cells and was photometrically determined at 595 nm.

Results (36hrs)

The results of cell viability measured by MTT assay is shown in Figure 1. After incubating in CO ₂ incubator for 36 hours and assayed in vitro on the HEP G2 cells using the MTT assay, the values for the 0.25, 12.5 and 62.5 nM TCDD-treated cells ranged from 0.34-to 0.18-fold lower than that for the primary human HEP G2, respectively. However, the two concentrations of HAD (10, and 20μM) provided in vitro activities on cell viability against the tested TCDD compound. As the following picture, the decrease in the level of enzyme reached statistical significance at 10, and 20μM concentrations of DHA against TCDD toxicity.

Figure 1.

Reference

1. T. H., G. F., & Y. M. (2016). Ameliorative effects of docosahexaenoic acid on the toxicity induced by 2,3,7,8-tetrachlorodibenzo-p-dioxin in cultured rat hepatocytes. Toxicol Ind Health, 32(6), 1074-1085.

Improved part

Engineer part: BBa_J364007 in pSB1C3 to become a shuttle vector (BBa_K2546004)

Using restriction enzyme and Polymerase Chain Reaction, we replace the Ori of BBa_J364007 in pSB1C3. This make plasmid become a shuttle vector which can replicate in broad host range. Checking this plasmid with EcoRI and PstI or XbaI and SpeI to see if the plasmid be cut off. By two groups of restriction enzymes, the result will get two band:5389bp and 1100bp (figure 1). It is also an evidence shows that our plasmid have prefix and suffix. With prefix and suffix, anyone can easily use our vector to perform the function of gene well. Moreover, we use interlab protocol ‘Cell growth, sampling, and assay’, to test the performance of Green Fluorescent Protein(GFP) of BBa_K2546004-GFP. The result reveals that BBa_K2546004-GFP can express GFP well in Burkholderia cenocepacia Strain 869T2. It even have much higher efficient to express GFP than the original plasmid: BBa_J364007 in pSB1C3 in Escherichia coli(figure 2,figure 3). Therefore, we prove BBa_J364007 in pSB1C3 to replicate in Burkholderia cenocepacia Strain 869T2, and prove the efficient of expressing GFP.

Figure 1. BBa_K2546004 RE digestion result: Using EcoRI and PstI or XbaI and SpeI to proof that we have complete BBa_K2546004

The evidence of RFP in BBa_K2546004

The colony of BBa K2546004 and BBa J044500-pSB1C3 on plate

Figure 2. the quantity of GFP performed by BBa_J364007(pSB1C3) in Escherichia coli, BBa_K2546004-GFP in Escherichia coli, and BBa_K2546004-GFP in Burkholderia cenocepacia Strain 869T2.

Figure 3. the quantity of GFP/per OD performed by BBa_J364007(pSB1C3) in Escherichia coli, BBa_K2546004-GFP in Escherichia coli, and BBa_K2546004-GFP in Burkholderia cenocepacia Strain 869T2.

The Growth of Recombinant Bacteria in TCDD Medium

The growth curves of the recombinant bacteria under different TCDD concentration treatments were tested to dissect the functions.

Single gene construct

1. Both pET24a/HAD construct and the vector control pET24a grew similar in the medium without TCDD . The strain HAD construct display better growth compare to control with 0.05ppm, 0.1ppm TCDD treatment (Fig. 1). This result indicated that HAD promoted the bacteria growth under TCDD treatment as expect.
   

   Figure 1. BBa_K2546004 RE digestion result: Using EcoRI and PstI or XbaI and SpeI to proof that we have complete BBa_K2546004
2. pET21b/TonB construct grew worse under higher concentration (0.1ppm, 0.2ppm) of TCDD than the lower one (0ppm, 0.05ppm) (Fig. 2 ) . It may result from the transporter protein TonB that intake TCDD may be toxic to the cell.
   

   Figure 1. BBa_K2546004 RE digestion result: Using EcoRI and PstI or XbaI and SpeI to proof that we have complete BBa_K2546004
3. The growth of strain TLcc declined in high TCDD concentration (Fig. 3). In our hypothesis, TLcc degrades TCDD, but it’s possible that the free radical attack the ring structure and cause damages to bacteria as shown in our results.
   

   Figure 1. BBa_K2546004 RE digestion result: Using EcoRI and PstI or XbaI and SpeI to proof that we have complete BBa_K2546004

Dual genes

1. The growth of strain HAD+TonB didn’t show defect impact compared to control (pET24a+pET21b) under high TCDD concentration (Fig. 4). The growth of HAD+TLcc (J23100) displayed slightly inhibited by TCDD compare to control J23100 (Fig. 5). These results may indicate that the two construct, HAD+TonB and HAD+TLcc, function in the bacteria that detoxify TCDD.
   

   Figure 1. BBa_K2546004 RE digestion result: Using EcoRI and PstI or XbaI and SpeI to proof that we have complete BBa_K2546004
   

   Figure 1. BBa_K2546004 RE digestion result: Using EcoRI and PstI or XbaI and SpeI to proof that we have complete BBa_K2546004

Three genes construct (tested pathway)

1. TonB+HAD+TLcc (J23100) had better growth with 0, 0.05, 0.1ppm TCDD treatment (Fig. 6). This indicated that the toxicity effect of TCDD can be detoxified due to the synergistic functions of the three genes-the uptake of TonB transporter, reduced by HAD enzyme, and breaking down by the laccase.
   

   Figure 1. BBa_K2546004 RE digestion result: Using EcoRI and PstI or XbaI and SpeI to proof that we have complete BBa_K2546004
2. The toluene is taken as the solvent control of TCDD which didn’t cause much influence to the growth of bacteria (Fig. 7).
   

   Figure 1. BBa_K2546004 RE digestion result: Using EcoRI and PstI or XbaI and SpeI to proof that we have complete BBa_K2546004