Difference between revisions of "Giant Jamboree/Abstracts"

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<h1> ABSTRACTS </h1>
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SCHEDULE
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COMPLETE BOOKLET
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POSTERS
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<div class='column half_size'> <h2>Aachen</h2> <p> <b> Region: </b>Europe - Germany<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Diagnostics<br><b>Poster: </b>Zone 5 - #302 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room304 - 4:45 PM - 5:15 PM</p> <p><a href='https://2018.igem.org/Team:Aachen'>Melasense</a></p> <p>We plan on developing a melatonin biosensor. Our approach for the biosensor is to genetically modify Saccharomyces cerevisiae by integrating a highly specific human melatonin receptor into the cells. Melatonin has a high membrane permeability which permits us to use the nuclear retinoid z receptor (RZR) which is directly regulating gene expression. We express the RZR as a fusion-protein with the recognition sequence of the human estrogen receptor alpha (ERα). When melatonin is bound, the modified receptor binds to the estrogen receptor responsive element (ERE) and as a consequence regulate expression of firefly luciferase reporter genes. In our second approach, we will use the membrane-receptor MT1 for our biosensor. When melatonin binds to the G protein-coupled receptor, β-arrestins can be recruited. This mechanism allows us to use an enzyme fragment complementation assay based on two fusion-proteins.<p></div>
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<div class='column half_size'> <h2>Aalto-Helsinki</h2> <p> <b> Region: </b>Europe - Finland<br><b>Section: </b>Overgraduate<br> <b>Track: </b>New Application<br><b>Poster: </b>Zone 4 - #229 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room304 - 4:45 PM - 5:15 PM</p> <p><a href='https://2018.igem.org/Team:Aalto-Helsinki'>Silkolor - A sustainable approach to dyeing industry using fusion proteins</a></p> <p>Textile dyeing is one of the biggest polluters of natural waters. Many of the synthetic dyes used are non-biodegradable, toxic and large amounts of them end up in waters during the dyeing process. Natural dyes, although less toxic than synthetic ones, require mordants in order to bind to the fabric. Mordants often contain aluminum or other metals, which are harmful to the environment. We are addressing the problem by using two types of colorful fusion proteins. Chromoproteins are fused with binding domains to create colorful proteins which can bind cellulose or keratin based materials, such as cotton or wool, respectively. Spider silk is added to some of the proteins in order to make colored silk proteins that can be made into fibers, which would erase the need for the dyeing step from the textile value chain completely. Our experiments were focused on binding tests and silk fiber production.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>ACIBADEM ISTANBUL</h2> <p> <b> Region: </b>Asia - Turkey<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 5 - #305 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room310 - 11:30 AM - 12:00 PM</p> <p><a href='https://2018.igem.org/Team:ACIBADEM ISTANBUL'>LTNF 2.0: Circularized Venom Neutralizing Factor</a></p> <p>The Opossum (Didelphimorphia) is an animal with a very unique characteristic; it displays an outstanding resistance to toxins, snake venoms in particular. This anti-venom ability is gained through a single protein; the Lethal Toxin Neutralizing Factor (LTNF). We are attempting to produce an improved version of this anti-venom, LTNF 2.0 if you will, as a synthetic anti-venom for human use. LTNF 2.0 incorporates the post-translational modification process known as circularization, a process that comprises of adding cysteine amino acids to both ends of a polypeptide chain; triggering the formation of a disulphide bridge, ultimately leading to a circular structure, hence the name circularization. Circularized proteins are known for not only greater stability but also greater efficacy of the protein, thereby improving its shelf life and lowering the required dosage for treatment, ultimately providing a more efficient bioproduct.<p></div>
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<div class='column half_size'> <h2>AFCM-Egypt</h2> <p> <b> Region: </b>Africa - Egypt<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 2 - #153 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room311 - 2:15 PM - 2:45 PM</p> <p><a href='https://2018.igem.org/Team:AFCM-Egypt'>Microbiota: Opening Doors to New Horizons in Colorectal Cancer Therapy</a></p> <p>Colorectal cancer (CRC) is considered one of the most common cancers and accounts for almost half a million deaths annually worldwide. Tremendous progress has been made in understanding the role of the immune system in driving the development of cancers, including CRC. As sensors of cell death and tissue remodeling, Toll like receptors(TLRs) may have a universal role in cancer. There are different TLRs that respond to a variety of Pathogen associated molecular pattern (PAMPs) such as bacterial lipopolysaccharide . The evidence of existence of relevance between bacterial microbiota and carcinogenesis is increasing. it's suggested that microRNAs act as ligands of TLRs playing a role in epigenetic immune modulation. In this study, We will assess the therapeutic efficacy of microbiome based approach as novel therapeutic strategy in restoring normal Toll lie receptor signaling in CRC cell line .<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>AHUT China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 2 - #99 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room208 - 3:15 PM - 3:45 PM</p> <p><a href='https://2018.igem.org/Team:AHUT China'>Carbon dioxide purifier</a></p> <p>With greenhouse effect becoming a widespread concern in recent years, how to effectively capture CO2 has become a worldwide problem. At present, CO2 capture mostly includes absorption, adsorption and membrane methods, etc., which have problems with high cost, high energy consumption for regeneration and secondary pollution. CO2 capture using carbonic anhydrase has attracted extensive attention due to its high catalytic efficiency and environmentally friendly properties. First, our project successfully expressed wide type carbonic anhydrase in E. coli, however, its industrial application was limited due to poor stability and easy inactivation. Therefore, based on this, molecular simulation technology was used to investigate effect of amino acid residues mutation on the conformation and activity of enzyme, and the mutant carbonic anhydrase with higher thermal stability was obtained. The experimental results showed that the purified mutant carbonic anhydrase exhibited higher stability and activity than wild type carbonic anhydrase, achieving efficient capture of CO2.<p></div>
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<div class='column half_size'> <h2>Aix-Marseille</h2> <p> <b> Region: </b>Europe - France<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 2 - #128 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room311 - 3:15 PM - 3:45 PM</p> <p><a href='https://2018.igem.org/Team:Aix-Marseille'>Breaking bugs</a></p> <p>An alternative weaponry must be found to replace the harmful and expensive traditional insecticides, that are now nearly useless against bed bugs. In fact, they developed multiple resistance mechanisms (exoskeleton thickening and enhanced metabolic pathways). The breaking bugs project aims to provide a human-friendly, and efficient solution to eliminate bed bugs. The plan is to elaborate an attractive lethal trap. We will use biosynthesized pheromones as a chemical lure to attract the bugs into the trap and infect them with Beauveria bassiana (an entomopathogenic fungus), causing a fatal epidemic. We produced several types of pheromones in E. coli and are running tests to create the optimal pheromone cocktail. We have worked on producing several enzymes and adding adjuvants to improve the killing efficiency and speed of the fungus. We had nationwide advertising of our project and obtained an indisputable validation from the public for our engagement in fighting bed bugs.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>ASIJ Tokyo</h2> <p> <b> Region: </b>Asia - Japan<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 5 - #287 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room309 - 2:15 PM - 2:45 PM</p> <p><a href='https://2018.igem.org/Team:ASIJ Tokyo'>A1AT deLIVERy - Using Stem Cell and CRISPR Technology to Combat Alpha-1 Antitrypsin Deficiency</a></p> <p>Alpha-1 Antitrypsin deficiency is a common genetic disorder -- the defective gene for which is carried by 1 in 25 people -- which arises from a single base pair mutation in the SERPINA1 gene, resulting in the production of a form of antitrypsin prone to polymerization. The mutated antitrypsin then builds up in liver cells and is unable to inhibit proteases in the lungs, leading to damage in both. Using CRISPR-Cas9 technology, we aimed to fix the error in SERPINA1 so that proper antitrypsin can be produced. We will show proof of concept in E. Coli cells using osmy secretion tags and GFP as a reporter. We hope to design a liver organ bud using IPS cell technology to deliver function A1AT through collaboration with Dr. Kagimoto of Healios Japan KK.<p></div>
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<div class='column half_size'> <h2>ASTWS-China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 2 - #152 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room302 - 11:30 AM - 12:00 PM</p> <p><a href='https://2018.igem.org/Team:ASTWS-China'>Environment-friendly Copper Ion Sense and Treatment System</a></p> <p>With the continuous development of industrialization, the negative environmental effects caused by heavy metal pollution are becoming more and more significant. Owing to easy migration and difficult biodegradation, it poses more challenges to the treatment of heavy metals in the environment, especially in soil and water. In this study, we developed an engineered E. coli-based system to sensitively detect the copper concentration in industrial waste using synthetic biological methods. Meanwhile, we are trying to introduce a new gene to effectively capture copper ions in environment. If successful, this constructed biosystem could not only detect copper ions, but also enrich heavy metal pollutants (copper), form copper deposits and then purify the environment, which is portable, low-cost and environment-friendly.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Athens</h2> <p> <b> Region: </b>Europe - Greece<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Diagnostics<br><b>Poster: </b>Zone 3 - #178 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room302 - 4:15 PM - 4:45 PM</p> <p><a href='https://2018.igem.org/Team:Athens'>GENOMERS: Toehold switch enabled viral detection via routine glucose monitoring technology</a></p> <p>Middle-East Respiratory Syndrome Coronavirus (MERS-CoV) is a virus with ~35% mortality rate, considered to be one of the most likely to cause major epidemics. We aim to develop a rapid, low-cost test for MERS-CoV for potential use in field diagnosis. Our biosensor is based on the toehold switch mechanism. The designed switches regulate the expression of trehalase, an enzyme which hydrolyzes the disaccharide trehalose to glucose. Thus, overall, the presence of viral load in the sample triggers glucose production, which is measured by a repurposed glucometer, signaling the diagnosis. Finally, attempting to accelerate the diagnosis, we lower the complexity of the switches using an alternative reporter, an engineered split trehalase. The two split fragments assemble to a functional enzyme through coiled-coil interactions. Our proposed diagnostic workflow is easily customizable for the detection of other viruses threatening global health, aiming to contribute to travel medicine and diagnostics.<p></div>
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<div class='column half_size'> <h2>Auckland MOD</h2> <p> <b> Region: </b>Asia - New Zealand<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 5 - #316 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room312 - 12:00 PM - 12:30 PM</p> <p><a href='https://2018.igem.org/Team:Auckland MOD'>Improving the Farmer, Environment and Nitrogen Use Efficiency</a></p> <p>Environmental pollution is a pressed global issue, even in clean, green New Zealand. Maintaining clean waterways is our responsibility as kaitiaki of the land (guardians in Te Reo Māori), but agricultural practices such as excess fertiliser application and cow effluent are flooding our New Zealand soils and waterways with urea. Taking a fluxomics approach in Arabidopsis thaliana, we are overexpressing a high-affinity urea transporter (DUR3) to upregulate the uptake of urea, and glutamine synthetase (GS1) to convert the toxic metabolite ammonia into glutamine. As a result, urea is removed more readily from the soil before it’s subject to groundwater leaching or surface run-off. We predict the increase in amino acid production will enhance plant growth. Applying our model to other plants like ryegrasses will allow farmers to grow pasture or forage crops that utilize urea on the paddock more efficiently, requiring less financial investment into urea fertilisers.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Austin LASA</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 5 - #317 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room302 - 2:15 PM - 2:45 PM</p> <p><a href='https://2018.igem.org/Team:Austin LASA'>Infection Detection: HIV1 Detection in Infants</a></p> <p>HIV diagnosis of infants in the developing world continues to pose many problems as current diagnostic methods are inaccurate in infants and difficult to administer in the field. Recent research demonstrates CRISPR-associated enzyme Cas12a's ability to indiscriminately cleave ssDNA following recognition and cleavage of a dsDNA target strand, lending itself to nucleotide detection assays. Due to their high stability in cells, Cas enzymes such as Cas12a are prime candidates for lyophilized bacterial reagents ('cellular reagents') that can be stored at room temperature until resuspended for later use in the field. Our project aims to design an innovative HIV1 diagnostic system for infants that combines cellular reagents with a Cas12a assay. For the purposes of iGEM and biosafety, our team focused on demonstrating the following with purified enzymes and cellular reagents: isothermal amplification of viral DNA and detection of viral DNA by a Cas12a assay.<p></div>
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<div class='column half_size'> <h2>Austin UTexas</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 1 - #69 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room312 - 12:00 PM - 12:30 PM</p> <p><a href='https://2018.igem.org/Team:Austin UTexas'>A Broad Host Range Plasmid Kit for Engineering Non-Model Bacteria</a></p> <p>Synthetic biologists often reach for a handful of well characterized organisms when designing experiments due to their ability to be reliably engineered with standard protocols. However, there are many non-model organisms that perform useful functions, survive extreme environments, or are optimized to produce certain materials which are largely ignored because the methods of engineering them are not well established. The broad host range kit aims to use genetic parts that function in a wide range of bacteria to make this process more efficient. The kit contains a combination of plasmid parts and assembled plasmids with origins of replication known to function in diverse bacteria. Each origin is linked to a fluorescent protein or chromoprotein so successful transformations can be easily identified when plated. Additionally, origins are associated with a specific barcode that can be sequenced to confirm the assembly. Several assemblies containing broad host range origins have been constructed.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Baltimore BioCrew</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 4 - #237 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room304 - 2:45 PM - 3:15 PM</p> <p><a href='https://2018.igem.org/Team:Baltimore BioCrew'>Coagulance Rx</a></p> <p>In 2017, Baltimore suffered from 301 homicides due to gun violence. As students who live in Baltimore City, we knew that this issue needed to be addressed. We decided to create a cost-efficient alternative to current fibrinogen-laced bandages on the market. Our method to cause blood clots was by expressing Factor V activator RVV-V gamma in E.coli. We intend to embed this protease into a bandage to treat gunshot or stab victims. We have also worked to enhance the expression of tissue plasminogen activator (tPA), an enzyme that causes coagulated blood to degrade. We want to express an optimized sequence of tPA within E.coli. A purified form of this tPA would be used within an IV therapy for patients suffering from heart disease and other illnesses involving invasive blood clots. We hope to liberate communities within Baltimore by creating more balanced and equitable methods of treatment.<p></div>
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<div class='column half_size'> <h2>BCU</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 2 - #141 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room311 - 5:15 PM - 5:45 PM</p> <p><a href='https://2018.igem.org/Team:BCU'>Nicotine Degradation</a></p> <p>Nicotine, a major alkaloid in tobacco plants, is a significant factor of evaluation for tobacco and cigarettes. Nicotine plays a critical role in smoking addiction and is well known to be harmful to human beings, because it easily crosses the blood-brain barrier and biological membranes. Meanwhile, with large quantities of tobacco products being produced and consumed, tobacco waste is entering the environment. So we want to find a key nicotine-degrading gene to degrade nicotine effectively in E.coli by synthetic biology. Nicotine oxidoreductase (nicA) from Pseudomonas putida S16 has been obtained by our team and a new expression vector has been constructed with promoter(J23119), ribosome binding site(RBS B0034), nicA ,terminator(B0015) in psb1c3. NICA expressed by E.coli top10 could catalyse and degrade Nicotine effectively from 35-50℃ and pH5 to pH8.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>BFSUICC-China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 2 - #95 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room309 - 2:15 PM - 2:45 PM</p> <p><a href='https://2018.igem.org/Team:BFSUICC-China'>Biological toolkit for Copper detection</a></p> <p>The world's production (supply) and consumption (demand) of copper have increased dramatically in the past 25 years. Massive mining and extensive using of copper results in serious contamination to environment, and then copper contamination threaten the balance of the whole ecosystem. We design a circuit that can better detect the amount of copper ions than before. We improved a previous Part by placing self-cleaving RNA ribozyme RioJ between the promoter of copA and RBS, and replacing reporter of GFP by sf GFP. PcopA is regulated by Cue R protein. We design a new part that is made up of L-arobinose inducing PBAD, RBS and Cue R coding sequence. Furthermore we connect the improved part and the new part together, which is the circuit of our project. It is found that Cue R protein of different concentration affects the response of Pcop A to Copper ions.<p></div>
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<div class='column half_size'> <h2>BGIC-Global</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 3 - #210 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room312 - 9:00 AM - 9:30 AM</p> <p><a href='https://2018.igem.org/Team:BGIC-Global'>Formaldehunter</a></p> <p>In large cities of China, the population growth is accelerating. As a result, an increasing number of buildings are constructed and renovated, and problems of indoor air quality in newly decorated houses become more and more serious. Formaldehyde existing in paint and furniture may cause asthma, or even potentially leukemia. It is commonly acknowledged that formaldehyde volatile is very hard to control as it has long volatilization period. Unfortunately, current methods to remove formaldehyde are mostly either inefficient or expensive. Therefore, our project aims to develop an engineered E.coli to detect and eliminate the indoor formaldehyde safely and efficiently, when the concentration of which exceeds the legal limitation. By emitting florescence, the E.coli indicates the presence of formaldehyde and its effectiveness. Besides, the design of replaceable freeze-dried E.coli ensures the durability of the product. In this way, we would like to provide people with a real 'formaldehunter'.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>BGU Israel</h2> <p> <b> Region: </b>Europe - Israel<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 4 - #250 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room309 - 9:30 AM - 10:00 AM</p> <p><a href='https://2018.igem.org/Team:BGU Israel'>OriginALS - Prolong ALS Patients Surival</a></p> <p>Amyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disease that leads to a progressive muscle wasting and paralysis due to damage in motor neurons. However, no efficient treatment exists. The BGU-IGEM team aims to develop a system that will ultimately prolong survival of ALS patients by targeting microglia and reactive astrocytes, which are both non-neuronal cells that directly contribute to motor neuronal damage. Our approach is based on: (1) inhibition of toxic pro-inflammatory cytokines secretion in microglia cells and (2) on promoting intrinsic apoptotic signal in reactive astrocytes and preventing their toxic effect on motor neurons. Using modified genome editing technique, we build a system that specifically target toxic astrocytes and prevent the formation of new ones which hopefully will slow down the progression of the disease. As the reactivity of microglia and astrocytes is a common in neurodegenerative diseases, our novel approach could be expanded to other neurodegenerative diseases.<p></div>
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<div class='column half_size'> <h2>Bielefeld-CeBiTec</h2> <p> <b> Region: </b>Europe - Germany<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 2 - #164 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room207 - 5:15 PM - 5:45 PM</p> <p><a href='https://2018.igem.org/Team:Bielefeld-CeBiTec'>nanoFactory: Recycling metal resources - Every particle matters!</a></p> <p>Copper, silver and gold - metals are essential for our daily life but resources are dwindling. Industrial mining of metals and electronic waste cause pollution of the environment. Therefore, we established new approaches to recover valuable resources through synthetic biology. By enhancing bacterial abilities to scavenge metal ions from the environment we generated nanoparticles. We optimized Escherichia coli to accumulate metal ions as copper and iron by overexpression of dedicated importers and silencing of exporters while reducing the effects of oxidative stress. To gather nanoparticles from various metal ions we engineered the iron storage protein ferritin. Recycled into nanoparticles the metals could be used for various applications as demonstrated by printing electronics. Considering Dual Use aspects we decided to extract metal ions from pit water instead of dissolving electronics directly. Therefore, in close collaboration with leading experts we developed a customized cross-flow bioreactor for the mining industry.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Bilkent-UNAMBG</h2> <p> <b> Region: </b>Europe - Turkey<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 3 - #173 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room309 - 10:00 AM - 10:30 AM</p> <p><a href='https://2018.igem.org/Team:Bilkent-UNAMBG'>The Last Penicillin Binder</a></p> <p>Water pollution originates from many contaminants and antibiotic waste is one of them. Antibiotics which remain in waste water after a treatment may cause bacteria to become multi resistant. In result of this, bacterial infections could spread rapidly and without having an efficient treatment. Current chemical methods of water purification require high cost and energy to be effective. To solve this problem with a cheaper method, our team modified bacteria to bind penicillin remains in waste water. The bacteria produce biofilms which on the surface has penicillin binding peptides attached to csgA proteins. We aim to target beta-lactam rings of the penicillin with these peptides. Our modified bacteria produces an iron-storage protein, bacterioferritin. Then using a magnetic field, we plan to pull away the penicillin-captured-bacteria to which we have added magnetic property with bacterioferritin proteins.<p></div>
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<div class='column half_size'> <h2>Bio Without Borders</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Diagnostics<br><b>Poster: </b>Zone 1 - #62 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room309 - 2:15 PM - 2:45 PM</p> <p><a href='https://2018.igem.org/Team:Bio Without Borders'>Blueblood</a></p> <p>Horseshoe crab (Limulus polyphemus) blood is the basis for the LAL clotting test for endotoxins in injectable formulations. Harvesting crabs for this purpose has endangered this 350 million-year-old species. The first step in the cascade that characterizes the LAL test is activation of the protease Factor C by contact with endotoxins. We have devised a replacement for the LAL test using cloned Factor C and an artificial substrate consisting of a reporter fused to cellulose binding domain with the Factor C protease site connecting them. The substrate is bound to paper by the cellulose binding domain. When exposed to Factor C mixed with the injectable liquid formulation to be tested, the presence of endotoxins will activate the protease and the substrate will be cleaved, releasing the reporter. Our aim is to develop the most cost-effective and simple device possible so that it can be used by everyone.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>BioIQS-Barcelona</h2> <p> <b> Region: </b>Europe - Spain<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Diagnostics<br><b>Poster: </b>Zone 2 - #106 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room208 - 9:30 AM - 10:00 AM</p> <p><a href='https://2018.igem.org/Team:BioIQS-Barcelona'>IN SITU PERSONALIZED DIAGNOSIS KIT FOR CELIAC DISEASE</a></p> <p>In our iGEM Project we will design a personalized gluten sensor through a synthetic biology approach. To do so, we will build a model based on the HLA expression of the patient which will be coupled to a sensor, allowing the detection of reactive epitopes. Our sensor: a) Will be built according to the patient HLA, allowing the detection of specific reactive epitopes independently of the food source. b) Will be able to detect reactive epitopes even in fermented foods. c) The methodology implemented in our sensor could be used for the identification of new reactive epitopes and unknown allelic variants. d) Requires only a DNA sample of the patient. Therefore, the methodology and application of our sensor could be extended for the detection of other HLA related disorders as well as the generation of new research lines for the diagnosis, detection and basic knowledge of these type of disorders.<p></div>
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<div class='column half_size'> <h2>BioMarvel</h2> <p> <b> Region: </b>Asia - Korea<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 1 - #64 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room309 - 2:45 PM - 3:15 PM</p> <p><a href='https://2018.igem.org/Team:BioMarvel'>Functional Fusion Protein-Based Biochip for Diagnosis and Monitoring of Heart Failure</a></p> <p>The goal of this project is to construct a novel fusion protein of gold binding polypeptides (GBP)-protein G (ProG) to develop an electrochemical biosensor for rapid and simple diagnosis and monitoring heart failure. DH5-alpha E. coli strain was transformed by a genetically modified recombinant vector coding GBP and ProG. The GBP-ProG fusion protein was derived from the strain with IPTG-induced expression and purified using the TALON metal affinity resin. The resulting GBP-ProG was directly self-immobilized onto gold surfaces via the GBP portion, followed by the oriented binding of antibodies onto the ProG domain targeting the Fc region of antibodies. An electrochemical immunochip was fabricated through the GBP-ProG and gold patterned interdigitated array electrode. Antibody immobilization onto the gold surface of the electrode by the GBP-ProG was rapidly and simply achieved with proper antibody orientation. This immunochip shown in this study could be used for diagnosis and monitoring of heart failure.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>BIT</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Diagnostics<br><b>Poster: </b>Zone 5 - #271 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room309 - 12:00 PM - 12:30 PM</p> <p><a href='https://2018.igem.org/Team:BIT'>JACOB 2.0:Reborn for Optimization</a></p> <p>Last year, our JACOB 1.0 used the competitive reaction between target protein and aptamer-complementary chain complexes to achieve signal conversion for sample markers' early detection. This year, we adopted the idea of JACOB, detect CKMB protein to monitor myocardial infarction. Then, in order to adapt to different needs of detection. We designed two sets of independent fluorescent expression systems that each has advantages. One is to modify the molecule SAM on the complementary chain, and to control engineering bacteria to produce GFP by using SAM-riboswitch. Another method is to combine the Spinach Probe with the complementary strand to form a stem loop structure to capture the Fluorescein (DFHBI) then produce fluorescence. We designed microfluidic chip that can carry the whole biological reaction process. We integrated the peristaltic pump on it also, so the chip and detection equipment are completely separated, which greatly reducing the volume of the overall instrument.<p></div>
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<div class='column half_size'> <h2>BIT-China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>New Application<br><b>Poster: </b>Zone 4 - #235 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room312 - 3:15 PM - 3:45 PM</p> <p><a href='https://2018.igem.org/Team:BIT-China'>Who can get an A?</a></p> <p>Reactive oxygen species (ROS) is considered as the main reason of human aging through damaging DNA, attacking membrane and inducing apoptosis. Now many antioxidants adding in food, cosmetic and some medical production claim they can clear oxidative damages. Although many methods of measuring antioxidants capability are precise in vitro, there is no standard method for living cell. Therefore our project is to construct a system which can determine the activity of antioxidants in vivo. We chose Saccharomyces. cerevisiae as host and accumulated ROS by overexpressing genes. After reacting with antioxidants, the remaining ROS could reflect the antioxidant activity which could be detected by a redox sensor, roGFP2-Orp1. Additionally, a feedback gene circuit was set to avoid the overproduction of ROS which injured our yeast. Compared with the traditional methods, our system requires a milder environment, damage-free and with higher biologically relevant which make our system more reliable.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>BJRS China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 4 - #249 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room304 - 3:15 PM - 3:45 PM</p> <p><a href='https://2018.igem.org/Team:BJRS China'>OxygenMAX</a></p> <p>Previous work have shown that the expression of bacterial Vitreoscilla hemoglobin (VHb) can help bacteria utilize oxygen more efficiently. However, the bacterial cell membrane makes efficient hemoglobin-oxygen contact a challenge. Based on this, our team designed a VHb surface display system to express VHb on the outermost shell of the bacteria to raise the hemoglobin-oxygen contacting efficiency. Consequently,this could help bacteria tolerate the low oxygen environment better. We named this system OxygenMAX system. Basically, our OxygenMAX system can be applied to industrial fermentation to raise the high-cell-density growth of the engineering bacteria in bioreactors. Also, allowing for the better growth ability of the OxygenMAX system carried bacteria, our system can help avoid contamination with miscellaneous bacteria in industrial fermentation. Moreover, our OxygenMAX system can be applied to other low-oxygen engineering bacteria working condition like biosensor in intestinal tract, water or soil.<p></div>
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<div class='column half_size'> <h2>BNDS CHINA</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 2 - #147 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room208 - 4:45 PM - 5:15 PM</p> <p><a href='https://2018.igem.org/Team:BNDS CHINA'>A. hydrophila Killer</a></p> <p>Aeromonas hydrophila is an ubiquitous gram-negative opportunistic pathogen in aquaculture. Every year, it causes a variety of diseases in fish. The symptoms include ulcers, fin rot, and hemorrhagic septicaemia. When A. hydrophila enters fish body, it often colonise in the gastrointestinal tract first. The pathogen's virulence factors secretion systems are controlled by N-acylhomoserine lactone (AHL)-dependent quorum-sensing system based on the ahyRI locus. Since the pathogen has developed resistance to most common antibiotics, our project targets to develop an A. hydrophila killer by engineering the fish probiotics, Escherichia coli MG1655. The killer expresses lactonase to degrade quorum sensing signals from the pathogen in aim of reducing the production of virulence factors. Also, it expresses antimicrobial peptides (AMPs) to inhibit the growth of A. hydrophila directly. We plan to regulate lactonase and AMPs expression by using Prhl promoter, which is induced by the pathogen's dominant quorum sensing molecule, C4-HSL.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>BNU-China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 3 - #208 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room302 - 5:15 PM - 5:45 PM</p> <p><a href='https://2018.igem.org/Team:BNU-China'>Screening Advantageous Mutants - a Self-enrichment System</a></p> <p>Bioengineering uses stable, highly productive mutants, target strains, which contain foreign genes. However, screening these mutants costs vast time and workforce, and it is difficult to avoid using antibiotics. We applies synthetic biology methods, constructing a novel pathway to screen mutants by giving target strains growth advantages. Here, utilizing AND gate, the gene of interest expresses to a certain level, making the downstream pchAB gene express and catalyze the generation of salicylic acid(SA). SA can activate the expression of glucose dehydrogenase, which gives the target strains an additional growth advantage. Besides, we integrate the most important control module of the system into the genome using Chemically Inducible Chromosomal Evolution(CIChE). In summary, the target strain will finally obtain the greatest growth advantage in bacterial suspensions and achieve screening internally. This new screening method is simple to operate and provides a new idea for antibiotic-free screening.<p></div>
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<div class='column half_size'> <h2>BOKU-Vienna</h2> <p> <b> Region: </b>Europe - Austria<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Information Processing<br><b>Poster: </b>Zone 4 - #260 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room304 - 10:00 AM - 10:30 AM</p> <p><a href='https://2018.igem.org/Team:BOKU-Vienna'>ROBOCROP –Turning Genes ON and OFF, in Yeast and Arabidopsis through a dCas9 Toggle Switch</a></p> <p>Our goal, communication with eukaryotes, is achieved through the heart piece of our model, the dCas9 Toggle Switch. This will allow switching between two stable states of gene expression. It consists of 2 gene classes which we simply call the ON and OFF genes. One gene in each class, which is considered the primary gene, codes for a gRNA which represses the antagonistic set of genes by binding to dCas9 and further blocking transcription though CRISPR Interference. The switch can be activated either by signal molecules binding to a receptor or directly by liposome bound gRNA that is taken up by the cell. As a proof of concept, the ON gene contains a GFP coding sequence as a reporter gene. Our design is very universal and has many possible applications in the lab and in agriculture, such as controlling flowering time of plants to protect them from late frost.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Bordeaux</h2> <p> <b> Region: </b>Europe - France<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 5 - #277 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room302 - 5:15 PM - 5:45 PM</p> <p><a href='https://2018.igem.org/Team:Bordeaux'>Far Waste in the Landes Forest</a></p> <p>This year IGEM Bordeaux Team would like to find an alternative to an entire segment of the traditional petrobased chemistry by a new green biobased chemistry. Indeed, we would like to focus on the biocatalysis of the hydroxymethylfurfural (HMF) in 2,5-furandicarboxylic acid (FDCA). Don't worry, it is not as complicated as it appears. HMF is a by-product of the lignocellulosic biomass treatment. Its toxicity toward microorganisms leads to big issue for many companies which want to use these microorganisms to produce molecules of interest from lignocellulosic biomass. Our project consists in HMF detoxification by using it as a substrate to produce FDCA through bacteria .FDCA was identify as one of most promising biobased molecules which can replace many polymers such as PET (and other petrobased molecules). We suggest a sustainable alternative, eco-friendly and independent from fossil resource.<p></div>
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<div class='column half_size'> <h2>BostonU</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 2 - #160 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room310 - 9:00 AM - 9:30 AM</p> <p><a href='https://2018.igem.org/Team:BostonU'>Characterizing Inducible Tools for Dynamic Control of Transcription in Budding Yeast</a></p> <p>BostonU is characterizing and optimizing two light-inducible promoters, LOV2 and PhiReX, in S. cerevisiae to improve eukaryotic transcriptional control with applications in industrial fermentation. Light-inducible promoters lend greater spatiotemporal control over transcription than small molecule-inducible promoters. Further, LOV2 is activated by blue light and PhiReX by red light, allowing for multiplexed control. We characterize these systems using the eVOLVER, a novel automated cell culturing platform developed by Brandon Wong at Boston University's Khalil Lab. The eVOLVER's specificity and high throughput allows for unprecedented characterization across light pulse programs, temperature, and OD thresholds. We then apply LOV2 and PhiReX to the violacein pathway, demonstrating the induction of four distinctly-colored phenotypes in a single strain, providing a proof-of-concept for the multiplexed control and finely-tuned expression of genes required for effective control of metabolic flux via transcriptional regulation.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>BostonU HW</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Open<br><b>Poster: </b>Zone 3 - #195 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room312 - 2:15 PM - 2:45 PM</p> <p><a href='https://2018.igem.org/Team:BostonU HW'>TERRA: An application agnostic device that selectively dispenses the outputs of microfluidic chips</a></p> <p>While microfluidics is not new to synthetic biology, they're not widely used by or accessible to many biologists. The current 'lab on a chip' microfluidic chips are highly specialized to each experiment and expensive to manufacture. In order to analyze the results of the experiments on microfluidic chips, many designs incorporate embedded sensors directly on chip. However, labs already have dedicated equipment to analyze experiments, such as plate readers and flow cytometers. Traditional analytical equipment could be used to analyze the outputs of microfluidic chips if the outputs were dispensed selectively into standard vessels, such as a 96-well plate. This would increase the design space for microfluidic experiments, enabling biologists to incorporate microfluidic chips into their workflows without having to fabricate highly specialized chips. To accomplish this we have created TERRA, an application-agnostic system that selectively dispenses the outputs from a microfluidic chip into standard vessels for downstream analysis.<p></div>
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<div class='column half_size'> <h2>Botchan Lab Tokyo</h2> <p> <b> Region: </b>Asia - Japan<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Food & Nutrition<br><b>Poster: </b>Zone 1 - #27 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room207 - 10:00 AM - 10:30 AM</p> <p><a href='https://2018.igem.org/Team:Botchan Lab Tokyo'>Bacterial Supplement ~Amino Acid Synthesis Model from Nitrogen in Intestinal Bacteria~</a></p> <p>Among some kind of nutrients, proteins are very important elements for body formation. However, it is difficult for people in poor areas to continuously obtain protein rich foods. Therefore, in addition to these ingredients, we propose 'Bacterial Supplement' anyone can easily take it into the body. We got this idea from Papuans living in Papua New Guinea. Despite their low-protein diets, they have muscular bodies. It is thought that nitrogen fixing bacteria in their intestines are influencing on protein nutrition. We thought to construct a pathway to synthesize amino acids from nitrogen in E. coli, introducing it in the future. To synthesize amino acids, we first express nitrogenase to convert nitrogen to ammonia. We then express amino acid dehydrogenase to synthesize glutamate and phenylalanine from accumulated ammonia. We hope that our project will contribute to the solution of protein-energy malnutrition by fixing this E. coli in our intestinal flora.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>British Columbia</h2> <p> <b> Region: </b>North America - Canada<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Manufacturing<br><b>Poster: </b>Zone 2 - #121 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room312 - 12:00 PM - 12:30 PM</p> <p><a href='https://2018.igem.org/Team:British Columbia'>Co-Optimize: Distributed Metabolic Pathway of Naringenin and Kaempferol</a></p> <p>Distributing metabolic pathways between microbial community members has shown significant potential for the large-scale production of complex, biologically-derived chemical products. Our goal is to address the challenge of regulating population dynamics in a synthetic microbial consortium, by improving the rate of production of naringenin and its pharmaceutically significant derivative, kaempferol, which has anti-cancer properties. This is done by distributing the synthesis of kaempferol between two E. coli strains and optimizing their relative proportions in co-culture. To optimize population dynamics for the production of kaempferol, we regulated the ratio of the two strains using GP2, a transcriptional inhibitor, under the control of a biosensor responsive to the pathway intermediate naringenin. This couples cell growth with the concentration of naringenin, allowing the co-culture to self-optimize based on pathway intermediate abundance. Using our system, we have demonstrated a novel way to optimize microbial polycultures for the synthesis of metabolically complex compounds.<p></div>
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<div class='column half_size'> <h2>BrockU</h2> <p> <b> Region: </b>North America - Canada<br><b>Section: </b>Overgraduate<br> <b>Track: </b>New Application<br><b>Poster: </b>Zone 2 - #89 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room306 - 11:00 AM - 11:30 AM</p> <p><a href='https://2018.igem.org/Team:BrockU'>Lights, Camera, Flip!: Engineering a Light-Activatable Flip Recombinase for in vivo Genetic Manipulation</a></p> <p>Flip recombinase is a versatile and important recombinase enzyme with broad applications in molecular genetic applications. Flip recombinase has been used to induce genetic mutations in vivo in numerous model organisms including bacteria, Drosophila, Zebrafish, and mouse and human cells. However, Flip recombinase activity is binary and thus cannot be precisely activated in time and space. Utilizing light sensitive protein interaction domains termed 'magnets', we have developed a light-sensitive optogenetic variant of Flip recombinase that can be controlled in Escherichia coli with exquisite spatio-temporal precision. We believe this Opto-Flip recombinase has the potential to be utilized in multiple model organisms, and will provide a novel tool allowing for precise molecular-genetic control for numerous future research and industrial applications.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>BUCT-China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 4 - #253 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room207 - 4:45 PM - 5:15 PM</p> <p><a href='https://2018.igem.org/Team:BUCT-China'>Research and Construction of Fatty Acids and Glyoxylic Acid Operons</a></p> <p>The regulation of expression in the process of life is the essence of life. The construction of gene expression regulation network has become the key to explain the mystery of life. However, due to its complexity and diversity, it is necessary to study its subunit ¬-operator first. . In this experiment, experiments were carried out by experimental ideas such as controlled experiments and deductive methods. Through the design process, operon prediction, operon verification, quantitative analysis, model establishment and other experimental processes, the research and construction of multi-class fatty acids and glyoxylate operons were carried out. Through many experiments, this experiment successfully constructed fatty acid, glyoxylate operon, and found a suitable substrate for fatty acid operons: hydroxy fatty acids. At the same time, quantitative experiments have also made some progress. Based on the qualitative and quantitative experiments, we also established the mode<p></div>
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<div class='column half_size'> <h2>Bulgaria</h2> <p> <b> Region: </b>Europe - Bulgaria<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Diagnostics<br><b>Poster: </b>Zone 5 - #286 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room304 - 11:30 AM - 12:00 PM</p> <p><a href='https://2018.igem.org/Team:Bulgaria'>The 65 CRISPRoses Story</a></p> <p>We aim to create a CRISPR-based DNA diagnostics system that could be used for the detection of the most frequent mutations leading to cystic fibrosis. This genetic condition is considered to be the most common rare disease in Bulgaria. In most cases, the patient is initially misdiagnosed when sweat chloride level is used as an indicator. Our system relies on CRISPR's ability to recognize specific sequences. We plan on using different read-outs, our first idea being site-specific DNA cleavage if a cystic fibrosis associated mutation is present. Another approach would be a pair of dCas9 proteins, linked to split halves of a reporter molecule that restores its activity if the target sequence is identified. Not only could our system be applied in big healthcare facilities, but also in many small town hospitals, since it does not require expensive and sophisticated equipment, for instance DNA sequencing devices.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Calgary</h2> <p> <b> Region: </b>North America - Canada<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 1 - #14 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room208 - 12:00 PM - 12:30 PM</p> <p><a href='https://2018.igem.org/Team:Calgary'>Snip, Equip, Flip: Towards a Safer Gene Therapy</a></p> <p>The ideal medicine is not a perfect treatment - it's a cure. Gene therapy, by correcting the genetic basis of disease, may represent humanity's best chance to develop such ultimate health solutions. Despite its unbounded potential, gene therapy is constrained by safety concerns surrounding existing gene transfer technologies. Highlighting a path forward, the 2018 Calgary team has developed a targeted gene integration strategy that leverages CRISPR knock-in, FLP recombinase vector integration and beta-resolvase backbone excision. Extending the integration strategy, the team tested chromatin-modifying elements to reduce variability in therapeutic gene regulation, built a droplet microfluidic device for a scalable gene transfer system, and developed a search tool to help iGEMers find past teams' software. As an extensible platform, the strategy promises greater reproducibility for transgenic research and industrial applications. As a vision for the future, the approach represents a shift away from legacy technologies and towards a safer gene therapy.<p></div>
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<div class='column half_size'> <h2>Cardiff Wales</h2> <p> <b> Region: </b>Europe - United Kingdom<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 2 - #97 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room309 - 9:30 AM - 10:00 AM</p> <p><a href='https://2018.igem.org/Team:Cardiff Wales'>RNAphid - an effective RNAi pesticide against Myzus persciae, expressed in Nicotiana benthamiana</a></p> <p>Aphids are crop pests globally. They feed on a massive diversity of crops and can cause tremendous economic loss for farmers by reducing crop yields and grain sizes. They damage crops directly by feeding on plant vasculature, draining essential compounds, or indirectly, as hosts of a variety of plant viruses. Current agricultural practice is to use chemical pesticides, which are unfavourable due to off-target effects, harmfulness to humans, and developing resistance of aphids. Consequently, our team has attempted to produce an effective RNAi pesticide against Myzus persicae, the most economically detrimental aphid pest worldwide. In the vasculature of Nicotiana benthamiana, we express siRNAs that affect aphid bacteriocytes, cells that enable the survival of their essential symbiont, Buchnera aphidicola. We target genes BCR3 and SP3 to do this. Finally, we expand the limited PhytoBrick registry, with several plant promoters and reporter genes.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>CCA-San Diego</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 2 - #131 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room306 - 5:15 PM - 5:45 PM</p> <p><a href='https://2018.igem.org/Team:CCA-San Diego'>HORIZON: Regulated Systems for Crude Oil Degradation, Coupled with Biohydrogen Production</a></p> <p>Oil fuels our modern world, but unrefined oil contains carcinogenic compounds known as polycyclic aromatic hydrocarbons (PAHs). PAHs and Petrogenic PAHs can inflict lasting damage to entire ecosystems. Horizon harnesses the natural ability of microorganisms to degrade PAHs to catabolize them into nontoxic substances. Horizon then reuses the catabolic end products which can be metabolized by bacteria to produce clean energy by coupling the degradation pathways with sequences that upregulate hydrogen synthesis within E.Coli. Horizon also uses synthetic pathways to metabolize long n-chained hydrocarbons to fuel such hydrogen synthesis. These engineered E.Coli systems are then implemented in a bioreactor system optimized for bioremediation and capable of modulating between conditions for degradation and synthesis. To regulate the oil degradation and hydrogen synthesis pathways inexpensively, Horizon characterizes riboswitches and novel synthetic CRISPRi operators under riboswitch regulation. Ultimately, Horizon provides a comprehensive system for oil degradation and clean energy fuel production.<p></div>
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<div class='column half_size'> <h2>CCU Taiwan</h2> <p> <b> Region: </b>Asia - Taiwan<br><b>Section: </b>Undergraduate<br> <b>Track: </b>New Application<br><b>Poster: </b>Zone 1 - #45 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room311 - 2:45 PM - 3:15 PM</p> <p><a href='https://2018.igem.org/Team:CCU Taiwan'>Liggreen</a></p> <p>With the policy of restriction on plastic usage in Taiwan,we aim to produce a lignin-like polymer which can be applied as a lining for paper cups in place of plastic. We were inspired by the water resistant nature of lignin, but natural lignin has many weaknesses. By taking advantage of an oxidizing enzyme produced by engineered Pichia pastoris, we can bind monolignols together into a simpler polymer. This polymer, which we named Liggreen, is water resistant like plastic but decomposable and also heat resistant. Liggreen in paper cups is just one of many applications, so the future of Liggreen is prosperous.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>CDHSU-CHINA</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 1 - #78 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room306 - 10:00 AM - 10:30 AM</p> <p><a href='https://2018.igem.org/Team:CDHSU-CHINA'>Use genetically modified lactic acid bacteria to compound miraculin</a></p> <p>Nowadays, it is nearly impossible for the patients with diabetes mellitus to enjoy the sweat foods, and our project is designed to solve that problem. So far, there is one thing that could help us reach our purpose-- Synsepalum dulcificum. The key is that the Miraculin in the Synsepalum dulcificum Could turn the taste of sour foods to sweat briefly, allowing patients with diabetes mellitus to enjoy the sweat taste. However, the current technology couldn't make the collection of Miraculin from the Synsepalum dulcificum easy and efficiently. Our goal is to compound the Synsepalum dulcificum protein by using genetically modified technology, and we believe that the new compound method could increase the quantity of the Miraculin and decrease the cost of production, with the intention to help diabetes mellitus patients.<p></div>
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<div class='column half_size'> <h2>Chalmers-Gothenburg</h2> <p> <b> Region: </b>Europe - Sweden<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 1 - #49 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room302 - 11:00 AM - 11:30 AM</p> <p><a href='https://2018.igem.org/Team:Chalmers-Gothenburg'>DiYEASTive: Probiotic yeast for diagnosis and treatment of colorectal cancer</a></p> <p>Our project uses Synthetic Biology to treat colorectal cancer. Our envisioned product is a pill containing genetically engineered probiotic yeast. The pill is ingested by the patient and passes through the digestive tract. If the ingested yeast cells encounter cancer cells in the colon, they will selectively attach to them. As more yeast cells accumulate, the secretion of anti-cancer molecules will be triggered. The yeast cells continuously produce gas vesicles which will refract ultrasound waves. This allows detection and monitoring using simple ultrasound imaging technology in an otherwise invisible and inaccessible part of the body. Meanwhile, the anti-cancer molecules specifically target and kill the cancerous cells, treating the patient with highly limited collateral damage.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>CIEI-BJ</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 1 - #42 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room312 - 4:45 PM - 5:15 PM</p> <p><a href='https://2018.igem.org/Team:CIEI-BJ'>A yeast system for detection and degradation of aflatoxin B1</a></p> <p>Our project is inspired by the possible contamination of the carcinogenic aflatoxins (AFTs), in Pu?er, a Chinese traditional fermented tea. We aim to design a genetically engineered yeast system to detect and degrade its widely occurred species AFT-B1. Our system contains three modules-induction, detection and degradation. The induction module was designed based on an iGEM project in 2017 using two fragments of an antibody against AFT-B1. The detection module utilizes enhanced yellow fluorescent protein to indicate the presence of ATF-B1. In the degradation module, four candidate enzymes were incorporated individually and their activities were assessed. Both detection and degradation modules are triggered when AFT-B1 bridges the two antibody fragments. Our design not only provides a parallel detection and degradation in yeast with potential practical value for Pu?er Tea and other agricultural products, but also establishes a convenient screening system for identifying novel AFT-B1-degrading enzymes.<p></div>
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<div class='column half_size'> <h2>Claremont</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 2 - #93 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room310 - 2:15 PM - 2:45 PM</p> <p><a href='https://2018.igem.org/Team:Claremont'>No title</a></p> <p>No abstract<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>CMUQ</h2> <p> <b> Region: </b>Asia - Qatar<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Diagnostics<br><b>Poster: </b>Zone 2 - #96 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room302 - 9:00 AM - 9:30 AM</p> <p><a href='https://2018.igem.org/Team:CMUQ'>Cas12a - Recognizing Carriers of recessive traits to save generations</a></p> <p>Our approach overcomes the limitations of sequencing, it being a cost-ineffective, labour-intensive, and location-specific method. Utilizing CRISPR for purposes other than gene editing has allowed us to create a novel, field-ready, diagnostic technique for carriers of recessive traits. Cas12a proteins are DNA targeting enzymes that recognize DNA based on a guide RNA sequence designed to match a target. The binding initiates non-specific single-stranded DNA (ssDNA) cleavage activity in Cas12a sufficient to degrade linear and circular ssDNA within minutes. Through this, ssDNA attached to fluorescent dye and quencher, serving as reporters, will undergo degradation. Upon cleavage, the quencher is released and fluorescence is emitted. We designed, built and programmed a hand-held device that can detect the fluorescence with high sensitivity. Simply, DNA obtained from cheek swabs, inserted into the device, diagnoses carriers of Sickle Cell Anemia.<p></div>
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<div class='column half_size'> <h2>CO Mines</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 2 - #108 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room304 - 11:00 AM - 11:30 AM</p> <p><a href='https://2018.igem.org/Team:CO Mines'>Molecular Mining of Cadmium: Detecting and Binding Cadmium for Bioremediation</a></p> <p>Heavy metal contamination at current and former mining sites is a significant environmental and human health problem. Cadmium (Cd) is one of the more commonly found metal contaminants and due to the highly toxic nature, even minute amounts can cause loss of function of the kidney and liver and loss of bone. We developed a rapid and efficient cadmium sensing and binding system that is capable of detecting cadmium down to 10 μM concentrations. When exposed to a minimum concentration of Cd, the cell expresses the green fluorescent protein (GFP). After Cd is detected, a metallothionein protein binds it and sequesters it in the periplasmic space in the E. coli cell. We will present data characterizing the performance of this system. The engineered system can be used for remediation efforts to remove Cd from the environment and process it safely.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>ColegioFDR Peru</h2> <p> <b> Region: </b>Latin America - Peru<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 4 - #244 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room309 - 3:15 PM - 3:45 PM</p> <p><a href='https://2018.igem.org/Team:ColegioFDR Peru'>Fishing for Mercury: Detecting and Removing Hg from Fish Meal.</a></p> <p>Contamination of heavy metals is intoxicating the food chain at an alarming rate. We are working with T.A.S.A., exporter of anchovy fish meal to detect, accumulate, and isolate mercury (Hg) from their fish meal product. Our first construct contains a Hg accumulator and Green Fluorescence protein (GFP) to detect and accumulate the Hg. The second construct, with delayed expressed of a Killer Red (KR) protein, will kill the bacteria in response to light. We aim to characterize the delayed expression of the KR protein under three different RBSs using unique constructs. The construct enabling delayed expression of the KR protein will be coupled with GFP/accumulator construct. We are building the GFP/accumulator construct using overlapping PCR. Finally, we are designing and creating a container optimizing the efficiency of detection and removal of Hg from fish meal.<p></div>
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<div class='column half_size'> <h2>ColumbiaNYC</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Diagnostics<br><b>Poster: </b>Zone 4 - #240 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room302 - 9:30 AM - 10:00 AM</p> <p><a href='https://2018.igem.org/Team:ColumbiaNYC'>Self-Contained Detection of Pathogenic Bacteria Using E. coli Based TX-TL Cell-Free Expression System</a></p> <p>Improved characterization of the cas13a protein provides the opportunity to build a cheap, rapid non-technical diagnostic tool that has point-of-care applications in resource-poor settings through the use of an Escherichia coli ¬≠based transcription-translation (TX-TL) cell-free expression system. This self-contained platform encodes all components for diagnosis from detection to a readout in a cell-free solution. By combining the collateral cleavage of CRISPR-cas13a and small molecule sensing via metal sensitive operons, this system becomes modular, allowing for multiple diagnostic targets. To demonstrate, gene fragments of Chlamydia trachomatis and Neisseria gonorrhoeae were detected through the creation of specific targeting guide RNAs. CRISPR-cas13a's collateral cleavage and its preferential cleaving towards certain motifs allowed for the development of a ratiometric read-out due to the preferential degradation of chromoprotein expressing mRNA. The diagnostic system provides a simple in vitro platform that can be used for the versatile detection of pathogenic bacteria in clinical or field settings.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Cornell</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 3 - #188 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room304 - 9:00 AM - 9:30 AM</p> <p><a href='https://2018.igem.org/Team:Cornell'>Oscillate</a></p> <p>As the field of synthetic biology grows, it becomes increasingly necessary to have a reliable cell signaling platform that is more resilient to noise than traditional promoter-controlled systems. This year, we developed a robust new paradigm for cellular signaling based on frequency, rather than amplitude-based signals. Our system is analogous to a band-pass filter in electronics; the bacteria respond only to signals of an intermediate frequency, but not those of low or high frequency. By adding tunable degradation tags to proteins in the system, it is possible to frequency at which the reporter was expressed. Versatile deterministic and stochastic models were developed by our team and used to simulate and predict properties of the system. Creating a more robust paradigm for cellular signaling has several implications for the future of synthetic biology, including advancements in biological data storage and computing, chemical production, and biosensing.<p></div>
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<div class='column half_size'> <h2>CPU CHINA</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>New Application<br><b>Poster: </b>Zone 1 - #48 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room306 - 4:45 PM - 5:15 PM</p> <p><a href='https://2018.igem.org/Team:CPU CHINA'>A gene therapy strategy to target hepatocellular carcinoma based on conditional RNA interference</a></p> <p>Hepatocellular carcinoma (HCC), also called malignant hepatoma, is one of the deadliest cancers. Through the introduction of a double-stranded RNA to the targeted messenger RNA (mRNA), RNA interference (RNAi) leads to the specific cleavage of the mRNA and efficient silencing of gene expression. Since RNAi could be used to silence genes involved in the development and progression of carcinomas, it has promising therapeutic potential for their treatment. The gene therapy strategy we propose here: (1) utilize two cancer-specific promoters (one HCC-specific) to open an AND-gated system to target HCC, the selectivity supposed to be extremely high; (2) is dependent on and hence controllable by a low molecular weight compound; (3) has the flexibility to be adapted to target any mRNA and, if there are disease-specific promoters, other diseases.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>CSU CHINA</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 1 - #8 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room302 - 11:30 AM - 12:00 PM</p> <p><a href='https://2018.igem.org/Team:CSU CHINA'>Hepasheild: Gene Circuits for Liver Cancer Gene Therapy</a></p> <p>The goal of our team is to develop a sensitive system to specifically kill liver cancer cells via genetic circuits, by using the combination of liver cancer-specific promoters and miRNAs. The expression of Gal4-VP16 fusion protein was under the control of liver cancer cells-specific AFP, hTERT or ZEB1-AS1 promoters. The Gal4-VP16 in turn drives the HSV-thymidine kinase (HSV-TK) expression by binding to nine tandem UAS elements in the promoter. Furthermore, the expression of Gal80, a Gal4 inhibitor, is controlled under a CMV promoter as well as a cluster of miRNA93/miRNA-362-5p/miRNA-221 binding sites at the 3'-end. As miRNA93/miRNA-362-5p/miRNA-221 are liver cancer cells-specific miRNAs, the expression of Gal80 is significantly suppressed in the liver cancer cells compared with normal cells. As a result, the nontoxic ganciclovir is converted by HSV-TK to a cell-killing drug in the liver cancer cells, but not normal cells.<p></div>
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<div class='column half_size'> <h2>CSU Fort Collins</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 4 - #239 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room207 - 3:15 PM - 3:45 PM</p> <p><a href='https://2018.igem.org/Team:CSU Fort Collins'>Staphylococcus aureus Quorum Sensing: A Look Into Ultra-Sensitivity Switches in Gram Positive Bacteria</a></p> <p>One of the most pressing matters facing the medical community is the growing dilemma of bacterial resistance to antibiotics. Due to their overuse, we have created bacteria that are resistant to antibiotics, and there are cases of bacteria that are resistant to multiple antibiotics, so called 'superbugs', such as Methicillin Resistant Staphylococcus aureus(MRSA). They pose an enormous risk to human health in the coming decades. We focused on utilizing the quorum sensing system of S. aureus to build a sensitivity switch, dependent on the concentration of the autoinducing peptide (AIP) that it uses to detect it's population density, and become virulent and break away from the biofilm. Our system will hijack the system and trigger production of a phage that will specifically target S. aureus and deliver a kill mechanism. This system will be able to safely treat S. aureus and avoid perpetuating the problem of creating new resistant species.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>CU-Boulder</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 5 - #284 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room207 - 2:45 PM - 3:15 PM</p> <p><a href='https://2018.igem.org/Team:CU-Boulder'>Antibody Switch</a></p> <p>Biologic based therapies have become a promising field in cancer medicine due to their ability to harness the immune system to attack cancer cells. However, a potential side-effect of these therapies is an overactive immune system which can lead to severe reactions and possibly death. A solution to this overactive autoimmune attack would be to engineer and implement a safety switch into the system. This would allow for more aggressive monoclonal antibody therapies to be used while limiting the hazards of potential severe side-effects of current therapies.<p></div>
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<div class='column half_size'> <h2>CUNY Kingsborough</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Open<br><b>Poster: </b>Zone 2 - #137 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room207 - 2:45 PM - 3:15 PM</p> <p><a href='https://2018.igem.org/Team:CUNY Kingsborough'>ow Cost Quantification of DNA Using ImageJ™ and Application</a></p> <p>Quantification of nucleic acids is essential for ligation reactions and other reactions that require nucleic acids. Without accurate quantification of nucleic acids, it is difficult to complete a molecular biology experiment. Spectrophotometers are commonly used but are not accessible to all lab groups, making experiments prohibitively difficult for some. The Ethidium Bromide Spot Test protocol is a quick and dirty approach that relies on visualizing dye-DNA complex fluorescence under UV light. However, its reliability is questionable because the protocol is not well characterized. This year, the CUNY Kingsborough iGEM team hopes to better characterize this protocol and standardize the fluorescent measurements using ImageJ™. Ideally, our characterization will allow future iGEM teams to reduce lab costs but still produce trustworthy results. As proof of application, we will use the Ethidium Bromide Spot Test to construct and characterize quorum sensing BioBricks. Additional modelling will be performed to tune the BioBricks’ pattern-forming behaviour.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Dalhousie Halifax NS</h2> <p> <b> Region: </b>North America - Canada<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 3 - #179 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room207 - 3:15 PM - 3:45 PM</p> <p><a href='https://2018.igem.org/Team:Dalhousie Halifax NS'>A Microbial Approach to Detecting Toxic Aluminum</a></p> <p>As a result of acid rain, levels of toxic aluminum are rising in Nova Scotia rivers. These aluminum levels correlate with dramatic declines in Atlantic Salmon populations. Measuring aluminum levels is expensive, making it difficult for community groups that protect rivers in Nova Scotia to track aluminum levels. To decrease this cost, we designed a sensitive and inexpensive biosensor to detect levels of toxic aluminum. Our team is making use of the natural product pyoverdine, a fluorescent compound that certain pseudomonads produce to scavenge iron. While the enzymes responsible for pyoverdine synthesis are known, it is not known what steps in the pyoverdine synthesis pathway may be rate-limiting. We are overexpressing pyoverdine enzymes to determine the rate-limiting step. We are developing a fluorescent aluminum biosensor, which could be used as a 'point-of-care' diagnostic for at-risk rivers. This will enable targeting of mitigation strategies and better profiling of aluminum levels.<p></div>
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<div class='column half_size'> <h2>Delgado-Ivy-Marin</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 5 - #299 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room306 - 4:45 PM - 5:15 PM</p> <p><a href='https://2018.igem.org/Team:Delgado-Ivy-Marin'>SynJazz NOLA</a></p> <p>No abstract<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>DLUT China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 1 - #22 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room309 - 9:00 AM - 9:30 AM</p> <p><a href='https://2018.igem.org/Team:DLUT China'>A mirobial agent for treating hyperuricemia</a></p> <p>Hyperuricemia refers to the symptom that the level of uric acid is unusually high in ,blood. It commonly affects joints and leads to the gouty arthritis which are shown as joint deformity. At present, the drugs for treatment of hyperuricemia show a strong side effect. Urate oxidase is an enzyme in organism that catalyzes the oxidation of uric acid in purine metabolism. It oxidizes uric acid to allantoin. Allantoin can be easily metabolized by the kidneys. To solve the above problems, introduced the gene encoding humanized urate oxidase into E. coli Nissle. After the patient consumes these bacteria, the recombinant strain will remain in the patient's intestine. When the uric acid concentration reaches the threshold, the strain can secrete urate oxidase which can reach the blood of the patient. In addition, we have set up a microbial population control and in vitro lethal system to make our strains safer.<p></div>
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<div class='column half_size'> <h2>DLUT China B</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>New Application<br><b>Poster: </b>Zone 2 - #142 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room304 - 11:30 AM - 12:00 PM</p> <p><a href='https://2018.igem.org/Team:DLUT China B'>Homehold portable urine analyzer for early diagnosis and monitoring of chronic kidney diseases</a></p> <p>In order to provide regular screening and early prevention for potential patient populations, it provides home portable visual detection. This project is aimed at chronic kidney disease caused by hypertensive and diabetes.In the early stages of the diseaseÔºåit can provides medical advice by testing the content of early indicator beta2 microglobulin in the urine. We can get the concentration of the beta2 microglobulin by color change of the liquid crystal film which substance is the orientation change of the liquid crystal molecules caused by the antigen-antibody reaction on the liquid crystal substrate.The aldehyde group at the carbon terminal of the nano-antibody is modified by a screening and co-expression system, and then C18 is attached to enhance its ability to induce liquid crystal molecules, so that the nano-antibody fully satisfies the needs of liquid crystal detection.This project provides prophylactic measures for patients, early recognition and timely treatment.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>DNHS SanDiego</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 4 - #216 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room207 - 4:15 PM - 4:45 PM</p> <p><a href='https://2018.igem.org/Team:DNHS SanDiego'>Survival and Quorum Sensing Activity of Pseudomonas aeruginosa Under Influence of QS Inhibitors vs Antibiotics</a></p> <p>Pseudomonas aeruginosa, an opportunistic bacterial species, often infects major burns and cystic fibrosis. Historically, antibiotics can treat these infections; however, P. aeruginosa quickly grow resistance, increasing colonization in human flora and decreasing treatment efficiency. Alternatively to antibiotics, inhibition of quorum sensing (QS), chemical communication among bacterial colonies, is under speculation. This experiment compares the effects of common antibiotics (gentamicin and tobramycin) to QS inhibitors (salicylic acid and zeaxanthin) on Pseudomonas survival and QS activity. Bacteria transformed with a plasmid that detected LasR, a P. aeruginosa QS indicator, levels and correspondingly produced green fluorescence protein (GFP) would be transformed to P. aeruginosa and grown in the presence of each antibiotic and QS inhibitor over 3 days. Absorbance and fluorescence would then be measured through serial dilution. This experiment explores a promising possibility for the future of antibacterial care efficiency and success in saving the lives of cystic fibrosis and burn patients.<p></div>
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<div class='column half_size'> <h2>DTU-Denmark</h2> <p> <b> Region: </b>Europe - Denmark<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Manufacturing<br><b>Poster: </b>Zone 1 - #52 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room207 - 9:00 AM - 9:30 AM</p> <p><a href='https://2018.igem.org/Team:DTU-Denmark'>Hyphae Hackers: Fungal building materials for extreme environments</a></p> <p>Colonization of uninhabitable areas, like Mars, will require building materials to be transported to the site of deployment. Transport limitations such as space and weight make this process very expensive. Based on these challenges, we propose to make building materials from fungal mycelium to be grown on site. Therefore, our project is focused on how to optimize the material properties of the fungi through engineering of basic fungal characteristics. Our initial studies identified Aspergillus oryzae as the best candidate chassis for material properties and ease of genetic engineering. Based on this, we transformed the melA gene from Rhizobium etli into A. oryzae in an effort to improve the UV radiation tolerance by establishing melanin production. Furthermore, we have designed a final geometric structure that can withstand external conditions and reduce the amount of work needed to assemble it.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Duesseldorf</h2> <p> <b> Region: </b>Europe - Germany<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 4 - #254 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room311 - 9:30 AM - 10:00 AM</p> <p><a href='https://2018.igem.org/Team:Duesseldorf'>Trinity - towards an engineered co-culture toolbox</a></p> <p>Co-cultures are found in all conceivable entities, such as the human gut, cheese or plants, but good tools to study those communities are currently not given. Indeed we created a modularly built toolbox using not only three different dependencies but also three different organisms: With Escherichia coli, Saccharomyces cerevisiae and Synechococcus elongatus our team engineered a system based on nutrient exchange. Here phosphate is provided through oxidation of phosphite, nitrogen source produced by melamine breakdown, whilst carbon source is provided by Synechococcus elongatus. Two additional independent approaches are designed, too. The first includes regulation via cross-feeding by amino acid auxotrophies and production: lysine by Escherichia coli and leucine by Saccharomyces cerevisiae. The other utilizes regulated self-lysis via quorum sensing molecules, to control cell density by a phage lysis gene. This engineered toolbox opens a wide range of possibilities to create microbial communities for different purposes, such as synthetic probiotics.<p></div>
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<div class='column half_size'> <h2>Duke</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Manufacturing<br><b>Poster: </b>Zone 3 - #169 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room312 - 11:30 AM - 12:00 PM</p> <p><a href='https://2018.igem.org/Team:Duke'>Optimized Taxol Biosynthesis in E. Coli</a></p> <p>Taxol is a natural molecule found in the bark of the Pacific Yew tree that has been used to treat a variety of cancers. Current manufacturing methods are unable to achieve high yields; the aim of our project is to greatly improve manufacturing outputs and reduce costs through biosynthesis of taxol from an intermediate in the synthesis pathway in E. coli. We used a modular approach to link the five necessary genes together before recombineering the construct into the E. coli genome; our design thus can be easily adapted to produce next generation taxanes. Five T7 bacteriophage promoters of varying strengths were selected from a promoter library and fitted in random combinations to the pathway genes. The resulting variants were screened to determine which combination of promoters maximized taxol synthesis. Finally, we analyzed the activity of produced taxol and evaluated this biosynthesis design's feasibility in industrially relevant conditions.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>East Chapel Hill</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 4 - #242 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room312 - 10:00 AM - 10:30 AM</p> <p><a href='https://2018.igem.org/Team:East Chapel Hill'>Improving the Efficacy of Riboswitch Based Sensor for Visual Detection of Fluoride in Water</a></p> <p>Fluoride, in appropriate quantities, has been recognized as beneficial for protecting tooth enamel from decay. However, a significant problem arises when excess amounts of fluoride infiltrate drinking water. High fluoride concentrations can result in dental fluorosis, which is characterized in children by hypomineralization of the enamel. To address this challenge by efficiently detecting fluoride in water, we aim to develop a fluoride biosensor using previously characterized fluoride riboswitches. Last year, we have developed an operon that, when fluoride binds, activates the riboswitch resulting in transcription of the chloramphenicol acetyltransferase gene. Thus, when fluoride is present, bacterial growth can be observed in the presence of chloramphenicol. However, this system was only able to detect high fluoride concentrations. To improve the efficacy and reduce the detection threshold, we used restriction enzymes to test various promoters and riboswitch sequences. We found that two of the new sequences promoted higher bacterial growth.<p></div>
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<div class='column half_size'> <h2>Ecuador</h2> <p> <b> Region: </b>Latin America - Ecuador<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 1 - #58 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room302 - 11:00 AM - 11:30 AM</p> <p><a href='https://2018.igem.org/Team:Ecuador'>Recombinant production of fusion proteins and their coupling to bacterial cellulose for obtaining a biomaterial.</a></p> <p>Development of a biomaterial based on the cross-linking of bacterial cellulose and fusion proteins, for use in biomedical applications. Bacterial cellulose is used as a bandage matrix. The fusion proteins have the following parts: CBD, ELP and BMP2. CBDs function is to bind to cellulose, the ELP protein gives greater flexibility to the bandage, while the BMP2 protein, an inducer of cell differentiation in osteoblasts, is responsible for reducing the recovery time of the bones. To achieve the objective, the expression of the cellulose and the fusion proteins is carried out separately. For bacterial cellulose, is used an Escherichia coli expression system, in two plasmids: psb1C3 responsible for cellulose synthesis and psb1A3 responsible for the synthesis of the export system and overproduction. For the fusion protein, is used plasmid psb1C3, which contain the genes for the proteins CBD, ELP and BMP2.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>ECUST</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 1 - #80 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room312 - 11:00 AM - 11:30 AM</p> <p><a href='https://2018.igem.org/Team:ECUST'>Engineering microbial method to solve the problem of blockage corrosion caused by bacteria</a></p> <p>The global cost of blocking and corrosion in cooling towers is estimated to be several billion dollars each year, which mainly results from the colonization of microbes. The microbes cause the formation of corroded objections and biofilm, directly leading to severe blocking. In this year, ECUST iGEM is trying to solve the problem by synthetic biology, presenting a totally new idea. By constructing engineered Escherichia coli, we design an integrated gene circuit which assembles sensing, cleaning rust, eliminating biofilm and killing iron bacteria. The microbes in pipelines will firstly be sensed through quorum sensing, then two key substances will be secreted to clear rust and biofilm respectively. When this method achieves the certain effect, the expression of antimicrobial peptides and autolysins will be triggered to kill the bacteria without adhesion ability, basically preventing the pipelines from being blocked again.<p></div>
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<div class='column half_size'> <h2>Edinburgh OG</h2> <p> <b> Region: </b>Europe - United Kingdom<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Manufacturing<br><b>Poster: </b>Zone 2 - #122 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room306 - 2:45 PM - 3:15 PM</p> <p><a href='https://2018.igem.org/Team:Edinburgh OG'>Escherichia Coli with heterologous polyhydroxyalkanoate (PHA) pathway produces bio-based and biodegradable thermoplastics from industrial co-products</a></p> <p>Among the pressing issues towards bio-based alternatives to plastic, cost-efficiency and truly sustainable models remain a challenge. As our proposed solution, we are investigating the production of polyhydroxybutyrate-co-valerate (PHBV) by looking not only at using industrial co-products as substrate but also improving downstream processing. PHBV and other polyhydroxyalkanoates (PHA) are thermoplastics that can be designed with bespoke physical properties based on their relative compositions. By introducing heterologous genes (phaCAB) from Cupriavidus necator, we engineered recombinant Escherichia coli to produce PHBV using co-products from local whisky distilleries. Furthermore, we have designed a secretion system to reduce costs associated with current extraction methods. To complement this, we are developing not only in silico metabolic models for optimized polymer synthesis but also macro-scale models to assess the environmental and economic impact of these products in their life cycles.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Edinburgh UG</h2> <p> <b> Region: </b>Europe - United Kingdom<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 2 - #166 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room208 - 9:00 AM - 9:30 AM</p> <p><a href='https://2018.igem.org/Team:Edinburgh UG'>Maxed OOT</a></p> <p>Release of the living prokaryotic chassis used in synthetic biology outside of laboratory conditions can cause unforeseeable damage to the environment and the ecosystems present there. However, the inability to release synthetic biology inhibits its usefulness, and limits its potential in solving global and localised problems. At team Maxed OOT we believe we have the solution… Maxicells! Maxicells are achromosomal E. coli cells that cannot replicate. Maxicells remain metabolically active following the loss of their chromosome and express genes given to them on an ‘instructor plasmid’. In our project we analyse the most efficient methods for maxicell production, quantify their active metabolic timeframe, and characterise them as a biosensor. Additionally, we present our triple lock system for preventing horizontal gene transfer. The resulting novel chassis could re-contextualise many previous Synthetic Biology projects and open doors for the field as a whole.<p></div>
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<div class='column half_size'> <h2>Emory</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Food & Nutrition<br><b>Poster: </b>Zone 2 - #168 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room312 - 5:15 PM - 5:45 PM</p> <p><a href='https://2018.igem.org/Team:Emory'>Recombinant bacteria protect fruit flies from malathion</a></p> <p>Organophosphate (OP) insecticides, including parathion and malathion, inhibit the enzyme acetylcholinesterase, thereby causing over-accumulation of the neurotransmitter acetylcholine. OPs account for 30% of pesticide sales worldwide. Over 200,000 people, mostly farm workers, die each year from over-exposure. The OP malathion is the most common insecticide contaminant of livestock feed in the U.S. Here we show that Escherichia coli that express artificially evolved enzymes protect a model animal, Drosophila melanogaster, from otherwise toxic doses of malathion. This result is significant because the strategy could be extended to protect pollinating insects, livestock and farm workers from malathion. More generally, these results suggest that enzymes that bioremediate toxinscan be applied without purification as long as they are expressed in environmentally benign hosts.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>EPFL</h2> <p> <b> Region: </b>Europe - Switzerland<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 1 - #84 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room207 - 4:45 PM - 5:15 PM</p> <p><a href='https://2018.igem.org/Team:EPFL'>Title: CAPOEIRA (CAncer PersOnalised Encapsulin Immunotherapy & Relapse surveillAnce)</a></p> <p>While Melanoma remains the deadliest form of skin cancer, immunotherapy approaches can harness our immune system to defeat it! Yet, current immuno-treatments suffer from high costs, limited accessibility, and poor specificity. Our project 'CAPOEIRA', named after the Brazilian self-defense martial-art, exploits the potential of synthetic biology to develop a personalized, cost-effective, and rapid production scheme for cancer vaccine and point-of-care relapse surveillance. First, a bioinformatic pipeline integrating state-of-the-art tools identifies our targets: melanoma neoantigens, the fingerprints of cancer cells. Next, cell-free protein expression rapidly synthesizes a library of encapsulin protein nanocompartments presenting the various neoantigen epitopes. This encapsulin vaccine activates dendritic cells which trigger T-cells' attack on the neoantigen-bearing cancer cells. Nevertheless, we don't underestimate a defeated villain! To detect potential relapse, we combine techniques including dumbbell probes, rolling circle amplification, isothermal amplification, and CRISPR-Cas12a to detect circulating tumor miRNA and DNA. Ultimately, CAPOEIRA trains the immune system to retaliate!<p></div>
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<div class='column half_size'> <h2>ETH Zurich</h2> <p> <b> Region: </b>Europe - Switzerland<br><b>Section: </b>Overgraduate<br> <b>Track: </b>New Application<br><b>Poster: </b>Zone 4 - #221 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room306 - 11:30 AM - 12:00 PM</p> <p><a href='https://2018.igem.org/Team:ETH Zurich'>AROMA - Autonomous Robot for Odorant Measurement in Air</a></p> <p>Cell-based biosensors allow to simply and selectively sense diverse chemical signals; yet their applications are limited by the minutes-to-hours timescale of gene transcription and translation. To generate a real-time output, we exploit the much faster changes in protein interaction and bacterial movement. Based on the E. coli Tar chemotaxis receptor, we developed two sensing systems: detecting DNA binding of a transcription factor via split luciferase complementation, and imaging the movement of bacteria at the single-cell level. The sensory domain of Tar can be modified to recognize different molecules, extending the applicability of the sensor. To show the advances brought by our system we built AROMA, an autonomous robot that is directly driven by the onboard biosensor. The robot detects the concentration of volatile compounds in air by imaging the bacterial response with a microscope built in-house. This enables our device to locate the source of pollutants or chemical hazards.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Evry Paris-Saclay</h2> <p> <b> Region: </b>Europe - France<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 1 - #83 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room306 - 2:45 PM - 3:15 PM</p> <p><a href='https://2018.igem.org/Team:Evry Paris-Saclay'>PepTalk - Repurposing Bacteriophage Peptide Signals For Expanded Bacterial Communication Vocabulary</a></p> <p>Communication is Key' is a universal principle that applies to all levels of organization: from microbial colonies to human social networks. Communication helps single-celled organisms to determine their collective fate by quorum sensing, and individual footballers to coordinate the winning goal for their team (Allez les bleus!). However, if the language used to communicate has limited vocabulary, it's hard to have any meaningful conversation. Synthetic bacterial consortia are currently engineered using a very small set of signalling molecules for cell-to-cell communication, thus limiting the potential of this powerful technology. In our project, PepTalk, we repurpose the small peptide based signalling system of SPbeta group bacteriophages for application in the more widely used laboratory workhorse Escherichia coli by engineering hybrid E. coli promoters in order to demonstrate orthogonal communication channels between cells. The PepTalk system will expand the repertoire of unique bacterial communication signals, enabling more complex conversations in bacterial consortia.<p></div>
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<div class='column half_size'> <h2>Exeter</h2> <p> <b> Region: </b>Europe - United Kingdom<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 1 - #7 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room309 - 5:15 PM - 5:45 PM</p> <p><a href='https://2018.igem.org/Team:Exeter'>Project Perchlorate: Turning a problem on Earth into a solution on Mars</a></p> <p>Mars is a location of scientific interest and the next step in space exploration. NASA’s 2008 Phoenix Rover found that Martian regolith contained up to 1% perchlorate salts, which would leach into crops grown in Martian soil and cause health issues like hypothyroidism. Additionally, transporting the necessary oxygen to a Martian base would be expensive and inefficient. Oxygen production would ideally take place in situ. Our project aims to utilise a GM bacterium that bioremediates perchlorate, reducing it to oxygen. Naturally occurring perchlorate reducing bacteria utilise two enzyme complexes; PcrABCD for perchlorate reductase and Cld for chlorite dismutase. We will insert these genes on two plasmids into E. coli. We’ve worked with stakeholders to design a perchlorate reducing bioreactor that could be integrated into existing life support systems, providing breathable oxygen. Existing methods of perchlorate disposal are explosive, something especially dangerous in space, making this a uniquely synbio project.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>FAU Erlangen</h2> <p> <b> Region: </b>Europe - Germany<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 4 - #224 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room304 - 2:15 PM - 2:45 PM</p> <p><a href='https://2018.igem.org/Team:FAU Erlangen'>Paving the Way for Biocatalytically Active Protein Membranes</a></p> <p>The idea of this project is the improvement of biocatalytic properties of enzyme cascades using surface-layer (S-layer) proteins. S-layers are prokaryotic protein membranes which assemble into two-dimensional lattices with different symmetries. As components of a model system, the S-layer proteins SbsB (p1, Geobacillus stearothermophilus), PS2 (p2, Corynebacterium glutamicum) and RsaA (p3, Caulobacter crescentus) were isolated. In solution these S-layer proteins arrange into three-dimensional nanostructures. Cluster formation of S-layer proteins was examined by mixing different symmetries (p1, p2 and p3). Structure formation was predicted with Monte-Carlo Markov chain simulations. To explore novel potential applications, S-layer proteins were conjugated with Streptavidin. Thus, various biotinylated fluorescence markers can be applied for FRET analysis. This can serve as model system for S-layer conjugates with biocatalysts.<p></div>
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<div class='column half_size'> <h2>FJNU-China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 3 - #185 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room302 - 4:15 PM - 4:45 PM</p> <p><a href='https://2018.igem.org/Team:FJNU-China'>2-PLEAsant</a></p> <p>According to statistics, the microbes we touched each day are about 3 times more than the human cells. The infection with some specific microbes can cause infectious diseases and give unpleasant smell. Bacteria can infect any area of the body and cause different diseases: pneumonia, meningitis, food poisoning, etc. Our project focuses on inhibition of the infectious microbes in a more efficient, environmentally friendly way. Based on the principles of metabolic engineering, we engineered an E.coli strain producing phenyllaclic acid that has broad-spectrum antibacterial effects, and the rose-like aroma compound 2-phenylethanol. We incorporated the common components of temperature and salt control in the synthesis system, which applied phenyllaclic acid and 2-phenylethanol to the natural environments. In addition, we designed the toxic protein mazF as a suicide switch to ensure biosafety. In the future research, we plan to promote the system into various types of fields and solve more environmental problems.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>FSU</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 4 - #228 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room302 - 4:45 PM - 5:15 PM</p> <p><a href='https://2018.igem.org/Team:FSU'>Audiogenetics: Activating Bacteria with Sound</a></p> <p>QUESTION: Can sound be used to induce gene expression in E. coli? IMPACT: It is routine to use a small molecule to induce gene expression in cells. Can sound become a routine means to induce gene expression? The Human Practices Team revealed that success in using sound to induce gene expression in cells has the potential to impact the brewing industry and molecular biology research. A potential negative impact could be the activation of pathogenic cells with sound guns. RESULTS: We characterized promoters submitted by the 2008 UC Berkeley team that potentially could be activated by sound. In parallel, we selected additional promoters that also have the potential to be induced by sound. We tested the promoters in new genetic devices to evaluate if different sound frequencies and amplitudes correlated with increased gene expression. The results of the tests are available on the wiki and will be presented.<p></div>
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<div class='column half_size'> <h2>Fudan</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 1 - #16 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room311 - 9:00 AM - 9:30 AM</p> <p><a href='https://2018.igem.org/Team:Fudan'>ENABLE across-membrane binary computing in mammalian cells</a></p> <p>Contact-dependent signaling is critical for multicellular biological events, yet customizing contact-dependent signal transduction between cells remains challenging. Here we have developed the ENABLE toolbox, a complete set of transmembrane binary logic gates. Each gate consists of 3 layers: Receptor, Amplifier, and Combiner. We first optimized synthetic Notch receptors to enable cells to respond to different signals across the membrane reliably. These signals, individually amplified intracellularly by transcription, are further combined for computing. Our engineered zinc finger-based transcription factors perform binary computation and output designed products. In summary, we have combined spatially different signals in mammalian cells, and revealed new potentials for biological oscillators, tissue engineering, cancer treatments, bio-computing, etc. ENABLE is a toolbox for constructing contact-dependent signaling networks in mammals. The 3-layer design principle underlying ENABLE empowers any future development of transmembrane logic circuits, thus contributes a foundational advance to Synthetic Biology.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Fudan-CHINA</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 2 - #154 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room310 - 11:00 AM - 11:30 AM</p> <p><a href='https://2018.igem.org/Team:Fudan-CHINA'>Synthetic Transducer Engineering Platform (STEP)</a></p> <p>Cell therapy has shown great potential in cancer treatment these years, while the existing CAR-T cell therapy can only target on cell surface antigens. However, there are also many tumour markers free in the blood, also being important targets marking the location of tumour. Here we manage to construct a brand new transducer system, named STEP, to recognise small, soluble tumour markers (e.g. VEGF, AFP, TSGF). For that purpose, we adapt and optimise a newly developed system to transduce the input (free ligands) into release of a transcription factor and expression of desired drugs. To increase the recognition ability, we use Rosetta to redesign the interface between ligand and receptor in order to enhance the binding affinity. Our STEP system can be applied for detecting tumour markers in blood and secrete drug in real time to appropriate tissues, providing a new yet practical approach for cell therapy and cancer treatment.<p></div>
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<div class='column half_size'> <h2>Gaston Day School</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 2 - #130 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room208 - 11:00 AM - 11:30 AM</p> <p><a href='https://2018.igem.org/Team:Gaston Day School'>Improving E. coli's resistance to isobutanol for large scale production</a></p> <p>We use fuel to power everything from our cars to our furnaces; however, our fuel supply is running low. As a result, we are turning to biofuels for renewable energy. We are trying ethanol, but it is inefficient, requires arable land, and pulls corn from the food supply. For this reason, our team is engineering E. coli K-12 to produce isobutanol, a biofuel with an energy density similar to gasoline. We started by improving E. coli's resistance to isobutanol. Though E. coli can produce isobutanol naturally, its toxicity will hinder production at high concentrations. Higher resistance will allow for greater production later. We cloned the genes GlmY, EutG, and AdhP, combined them with a range of promoters, and observed bacterial growth in media containing isobutanol from 0.0217 to 0.650mM. In the future, we plan on cloning AdhE, AceE, AceF, YiaY, and GlmZ: genes associated with alcoholic resistance.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>GDSYZX</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 1 - #71 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room309 - 3:15 PM - 3:45 PM</p> <p><a href='https://2018.igem.org/Team:GDSYZX'>Rocking Yeast</a></p> <p>Our goal this year is to create a kind of yeast for controlling heavy metal contamination in water. Heavy metal pollution has the characteristics of being enriched by the biological chain.Traditional treatment methods such as chemical reagent sedimentation mostly bring about great environment pollution and potential safety hazard. We aim at treating this pollution with yeast in an environmentally friendly, economical and effective manner. We found that gene PCS1 extracted from Arabidopsis thaliana can synthesize phytochelatins to chelate heavy metal ion. we use the genetic engineering techniques to take the pcs1 gene from Arabidopsis thaliana and then transfer it into the pPIC9K plasmid. The final step of the process is to transfer this plasmid into the yeast’s cell and activate the gene expression of psc1. <p></div>
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<div class='column half_size'> <h2>Georgia State</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Diagnostics<br><b>Poster: </b>Zone 3 - #183 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room302 - 10:00 AM - 10:30 AM</p> <p><a href='https://2018.igem.org/Team:Georgia State'>Is Your Detector Expecting? See with HCG!</a></p> <p>Detection is essential in providing an illustration of the chemical world around us. Currently, fluorescent protein are used as reporters but they require additional analysis with expensive and immobile equipment. We propose to create an alternative detection system kit using recombinant Human Chorionic Gonadotropin (HCG) as a reporter. The goal of our project is to create an easy, cost-effective, and sensitive detection device for use in synthetic biology, it can even be used by other iGEM teams to get an all-or-nothing response indicating the presence of targeted protein using pregnancy test strips. We plan to create a pGEX plasmid containing recombinant HCG preceded by new restriction sites which is where the promoter is inserted, only to be activated in the presence of the protein in question. Then when a pregnancy test strip is inserted in the sample, it will trigger the response based on the activation of the introduced promoter.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Gifu</h2> <p> <b> Region: </b>Asia - Japan<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 4 - #217 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room306 - 2:45 PM - 3:15 PM</p> <p><a href='https://2018.igem.org/Team:Gifu'>MPPP (Mass-production of protein in PURE system)</a></p> <p>In vivo circular RNA expression can be a cutting edge method to perform mass-production of protein. During the translation of coding information of DNA into amino acids, function of ribosomes is naturally influential. The translation is initiated by binding ribosomes to mRNA and termination of translation is induced by a stop codon. When a start codon is recognized by ribosomes, the protein producing organelles release the protein. To produce large amount of protein and long-chain protein we can utilize circular RNA without the stop codon. iGEM Gifu 2015 performed the method of the Permuted Intron-Exon Method (PIE method). Currently 2.5% of transcribed RNA can be formed as circular RNA. With PIE method, mass-production of protein was confirmed in E.coli, however the protein had no function because of aggregation. This year our team will try to produce functional protein from the circular RNA in PURE system, a kind of cell-free system.<p></div>
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<div class='column half_size'> <h2>GO Paris-Saclay</h2> <p> <b> Region: </b>Europe - France<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 3 - #205 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room311 - 4:15 PM - 4:45 PM</p> <p><a href='https://2018.igem.org/Team:GO Paris-Saclay'>MethotrExit: a HeteroGenious Cleaning Factory</a></p> <p>Cytotoxic anticancer drugs are among the harmful chemicals found in hospital wastewater at high concentrations. Degradation through physical and chemical methods exist but are often inefficient, unsustainable or expensive. We propose MethotrExit, a bioreactor-based approach to tackle this problem. We focused on the biotransformation of methotrexate (MTX), a widely used anticancer drug. We designed synthetic cassettes encoding a new biotransformation pathway using a heterologous carboxypeptidase in Escherichia coli. In only five hours, MethotrExit drastically removes MTX from the media. However, anticancer drug degradation products and/or the biotransformation pathway itself might be toxic for E. coli. To overcome this issue, biobricks generating heterogeneity in enzyme expression were built to ensure survival of a subpopulation. Modeling of this system highlights the interest of a division of labor between 'cleaning' and 'stem' bacterial cells.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Goettingen</h2> <p> <b> Region: </b>Europe - Germany<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 3 - #198 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room312 - 9:30 AM - 10:00 AM</p> <p><a href='https://2018.igem.org/Team:Goettingen'>Glyphosate on my plate?! Detection and inactivation of Glyphosate using the soil bacterium Bacillus subtilis</a></p> <p>Feeding the steadily growing world population is a major agricultural task that heavily relies on the utilization of herbicides. Glyphosate is the prominent example for a total-herbicide, as its usage rate is ever increasing since its introduction in 1974, making it the most-used herbicide in the USA today. Glyphosate has a bad reputation as it is thought to be harmful to human health. We want to improve the knowledge of the influence of glyphosate on the physiology of a model organism. For this purpose, we aim to engineer the Gram-positive model bacterium Bacillus subtilis for the detection and degradation of glyphosate. So far, we have isolated B. subtilis variants tolerating high amounts of glyphosate. Currently, these strains are used to develop and characterize a glyphosate detection system, which is based on fluorescently labeled bacteria. We also plan to engineer the bacteria for glyphosate inactivation using the glyphosate N-acetyl-transferase.<p></div>
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<div class='column half_size'> <h2>GreatBay China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 1 - #2 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room309 - 2:45 PM - 3:15 PM</p> <p><a href='https://2018.igem.org/Team:GreatBay China'>mCATNIP: microbial Compartmentalization AssisTed Nepetalactol Ingredient Production</a></p> <p>Nepetalactone is the active ingredient in catnip, a feline attractant, and a potential green pesticide. It has a common precursor, nepetalactol, with other plant-derived compounds of great therapeutic value, such as vincristine (an anti-cancer drug). We aim to synthesize nepetalactol through the co-culture of E. coli and yeast where E. coli generates the intermediate geraniol, and yeast continue to convert geraniol to nepetalactol. Endogenous genes in yeast are deleted to reduce shunt products. Besides, we design, characterize, and use a library of transcription activator-like effectors (TALE) stabilized promoter to regulate the heterologous gene expression in E. coli. Our applied design conceives the future application of nepetalactone on stray cat control, which we consider as an opportunity for public engagement and education.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Grenoble-Alpes</h2> <p> <b> Region: </b>Europe - France<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Diagnostics<br><b>Poster: </b>Zone 1 - #70 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room309 - 11:30 AM - 12:00 PM</p> <p><a href='https://2018.igem.org/Team:Grenoble-Alpes'>Phagyzer' : a fully automated detection device in the superbugs era.</a></p> <p>Bacteriophages are viruses that kill specifically, and with a relative efficiency, strains from a bacterial species. They are thus a viable alternative to antibiotics that our fully automated device aims to promote. Our project is designed to: identify a pathogenic bacterium; detect if this bacterium presents an antibiotic resistance marker; select the most effective phages for a therapy. As a proof of concept, we targeted Pseudomonas Aeruginosa, a bacterium causing opportunistic lung infections in immunosuppressed patient. We created DNA probes targeting a housekeeping gene and an antibiotic marker of PAO1. In parallel we automated the different processes required for detection with DNA probes: from the DNA extraction after lysis to a fluorescence measurement via a bacterial transformation. Hence, untrained healthcare professionals will eventually be able to take a sample from a patient, run it through our system, wait for a few hours and get information to decide of a therapy.<p></div>
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<div class='column half_size'> <h2>Groningen</h2> <p> <b> Region: </b>Europe - Netherlands<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Manufacturing<br><b>Poster: </b>Zone 4 - #238 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room304 - 2:45 PM - 3:15 PM</p> <p><a href='https://2018.igem.org/Team:Groningen'>StyGreen: Bioplastic from cellulosic waste through consolidated bioprocessing</a></p> <p>Current production of styrene, an important plastic monomer, is oil based. As an alternative to oil based styrene we aim to produce styrene from a presently underused wastestream: cellulosic waste. Our system consists of both breaking down cellulose to glucose and subsequent styrene production in Saccharomyces cerevisiae. First the cellulose is degraded by an established cellulosome complex containing different cellulases and a cellulose binding domain. By complexing the cellulases and anchoring the complex to the cell wall the efficiency of the cellulosome is enhanced synergistically. The freed glucose is taken up and used for growth and production of phenylalanine. Conversion of phenylalanine to styrene occurs in two steps, first the phenylalanine ammonia lyase enzyme (PAL2) is introduced, which enables the yeast to convert phenylalanine into trans-cinnamate. The final step of our cascade is catalyzed by a native enzyme, producing styrene from trans-cinnamate.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>GZHS-United</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 2 - #145 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room207 - 11:00 AM - 11:30 AM</p> <p><a href='https://2018.igem.org/Team:GZHS-United'>And then there were none (mosquitoes)</a></p> <p>Our project is to make a new biological mosquito killer to kill mosquitoes in an environmentally friendly way. Mosquito-borne diseases such as dengue and Zika are prevailing around the world and causing death of a great number of people every year. Therefore, controlling mosquitoes is of great importance. There are two active components in our product: protein Cry11Aa and recombinant Aedes aegypti densoviruses. Protein Cry11Aa is solubilized in mosquito mid-gut and can lead to cell lysis when binding the receptor on cell membrane. The recombinant Aedes aegypti densoviruses can express insect-specific toxin, which kill mosquito by to affect insect neuronal sodium conductance. We mix them together to make effective and environmental mosquito killer. The new mosquito killer shows a high specificity for mosquitoes as a host. It is relatively stable in the environment and have the potential to spread and persist in mosquito populations.<p></div>
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<div class='column half_size'> <h2>H14Z1 Hangzhou</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 2 - #162 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room306 - 4:15 PM - 4:45 PM</p> <p><a href='https://2018.igem.org/Team:H14Z1 Hangzhou'>Production of several liver-saving factors in Lactobacillus</a></p> <p>After literature survey, several key liver-saving factors were screened out and further synthetic pathways were constructed in Lactobacillus. This in-vivo strategy will be super to the traditional production of these factors in industry.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>HAFS</h2> <p> <b> Region: </b>Asia - Korea<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 2 - #109 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room312 - 4:15 PM - 4:45 PM</p> <p><a href='https://2018.igem.org/Team:HAFS'>Minicell-based oral delivery of Insulin</a></p> <p>Type 1 and 2 Diabetes mellitus (T1DM, T2DM) are caused by inappropriate insulin production. The former results from the lack of √ü cell, while the later results from insulin resistance. In order to treat T1DM as well as severe cases of T2DM, patients should be injected with insulin analog multiple times a day. Because these analogues are readily degraded upon oral intake, the only method of injecting insulin analog is via invasive methods. We aimed to develop minicell-based insulin delivery system that can be orally administered. Minicells are achromosomal cells that do not reproduce. Overexpression of FtsZ gene in Escherichia coli induces abnormal cell division that produces minicells. Through gibson assembly, we have engineered the minicell that produce single chain insulin associated with cell penetrating peptide that facilitates cellular intake. The cells lyses in response to bile salt, which leads to targeted secretion of insulin in intestine.<p></div>
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<div class='column half_size'> <h2>Hamburg</h2> <p> <b> Region: </b>Europe - Germany<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 1 - #82 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room311 - 9:00 AM - 9:30 AM</p> <p><a href='https://2018.igem.org/Team:Hamburg'>Reagents of S.H.I.E.L.D.</a></p> <p>Malaria is one of the deadliest diseases worldwide. Extraordinary efforts are made to reduce malaria infections with limited success. All currently available applications, which look to prevent transmission by mosquitoes, are limited by the vast infrastructural differences in affected regions. With the Sustainable Human-Imitating Elimination and Lure Device (S.H.I.E.L.D.) we developed a mosquito trap tailored especially to the requirements of infrastructurally and economically disadvantaged regions. S.H.I.E.L.D. employs a self-sustaining co-culture of cyanobacteria and engineered E. coli which produce a complex mosquito attractant mixture as well as a targeted bioinsecticide. Careful implementation of novel regulatory circuits limiting cell growth, responding to nutrient availability, and monitoring metabolic load allows sustained in-trap production of attractants and insecticide over extended periods of time. The durable trap case with nano filter, co-culture separation and hydrogel reservoir ensures biosafety and brings together our no-maintenance sustainable solution to one of world's biggest problems.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Harvard</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>New Application<br><b>Poster: </b>Zone 3 - #212 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room310 - 10:00 AM - 10:30 AM</p> <p><a href='https://2018.igem.org/Team:Harvard'>Degratin: a story of keratin degradation</a></p> <p>Keratosis pilaris and Seborrheic keratosis are characterized by a buildup of keratin which are accompanied by redness and rashes. In severe cases, these skin conditions may be precancerous. Keratin is difficult to degrade due to the nature of its protein structures. However, complete degradation can be induced by the synergistic capacity of endo-acting, exo-acting, and oligopeptide-acting keratinases. We have engineered strains of E.coli to produce these keratinases and secrete them through the curli secretion pathway. We then encapsulated these modified bacteria in a hydrogel only permeable to the enzymes and essential nutrients for growth. Thus, we've created a prototype for a keratin-degrading patch to place on the afflicted area to mitigate the lesion, eliminating the need for conventional invasive treatments. The development of easily produced keratinases lends to future uses, such as management of agricultural waste and facilitated research in precancerous growths linked to excess of keratin.<p></div>
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<div class='column half_size'> <h2>Hawaii</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Overgraduate<br> <b>Track: </b>New Application<br><b>Poster: </b>Zone 2 - #113 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room306 - 12:00 PM - 12:30 PM</p> <p><a href='https://2018.igem.org/Team:Hawaii'>Delivering Transgenes to Corn Centromeres</a></p> <p>Nature has provided a remarkable system to insert genes into functional centromeres of grass genomes. Specifically, centromeric retrotransposons (CR) have the unique ability to insert themselves into the centromere by targeting a yet unidentified docking agent. We plan to adapt this system to insert genes of interest into centromeres. Centromeres are advantageous transgene targets because they lack recombination, allowing the stacking of multiple traits. Retrotransposons, or 'jumping genes,' self-replicate and package their genome into self-assembling virus-like particles (VLPs), then reinsert (or 'jump') themselves into a new chromosomal location. To measure the stability of VLPs for packaging molecular cargo, we cloned the full-length gene encoding the CR gag protein and successfully generated VLPs in vitro. We also tested the efficiency of different gene constructs in forming VLPs in vitro. Electron microscopy can confirm VLP assembly, however, we plan to develop a convenient fluorescent assay to assess VLP assembly.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>HBUT-China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 5 - #278 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room207 - 2:15 PM - 2:45 PM</p> <p><a href='https://2018.igem.org/Team:HBUT-China'>Nickel Hunter2.0</a></p> <p>This year's iGEM team decided to continue the work started by last year's team with the Nickel Hunter project; a biological device to detect nickel ions in the environment. Two shortcomings of the previous design were a small measurement range, and low precision. This year we added the nickel ions channel protein NikABCDE gene to the original gene element allowing the ions to enter the cell more smoothly, which has improved both of these issues. We also replaced the RFP gene with the luciferase LuxCDABE gene. The reporter gene emits fluorescence in response to nickel ions which further enhances our measurement precision. It also provided the opportunity to develop a biosensing instrument for real-time nickel ions detection. Our changes improved sensitivity and range, as well as provided an opportunity for a new method of nickel ions detection.<p></div>
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<div class='column half_size'> <h2>HebrewU</h2> <p> <b> Region: </b>Asia - Israel<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 1 - #51 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room302 - 9:00 AM - 9:30 AM</p> <p><a href='https://2018.igem.org/Team:HebrewU'>The Catalysis of Dioxin Degradation</a></p> <p>Dioxins, a family of chemical compounds, pose a serious threat to humans, animals, and the environment. Classified as persistent environmental pollutants, these compounds move up the food chain via bioaccumulation; consequently, they are found in very harmful concentrations by the time the reach humans. Our team has set out to engineer a metabolic pathway for the complete degradation of dioxins, and detoxification of chlorinated compounds. The pathway would involve the uptake of these pollutants and their subsequent breakdown into molecules that would enter organisms' native metabolism. We are testing the pathway in S. cerevisiae, and have prepared expression vectors and means to engineer a multitude of plants. By deploying such pathways directly into endemic plants, our solution can be tailored to specific regions. Furthermore, because we can efficiently control plant reproduction, we can responsibly implement synthetic biology to solve this issue in a non-invasive and ecological manner.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>HFLS ZhejiangUnited</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 2 - #129 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room207 - 11:30 AM - 12:00 PM</p> <p><a href='https://2018.igem.org/Team:HFLS ZhejiangUnited'>Formaldehyde Eliminator: Engineered Microbes for Detecting and Biodegrading of Formaldehyde</a></p> <p>Formaldehyde brings different degrees of harmful symptoms to us humans, such as eye, throat and skin irritation, and even carcinogenicity, which is widespread used in construction and decoration industries. In previous iGEM projects related to formaldehyde, several problems still need to improved, such as 1) the present sensing threshold of formaldehyde concentration (~ 10 ppm) is far upper beyond the environment-protecting standard (~ 0.1 ppm); 2) the degrading system seems to work unstably, although some survival or duration after formaldehyde addition was observed. Our project is aiming to construct a more sensitive and effective E. coli-based system for detecting and further degrading formaldehyde in environments, basing on current systems (already registered as BioBrick parts).<p></div>
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<div class='column half_size'> <h2>HK HCY LFC</h2> <p> <b> Region: </b>Asia - Hong Kong<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 1 - #55 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room302 - 2:45 PM - 3:15 PM</p> <p><a href='https://2018.igem.org/Team:HK HCY LFC'>A Self-Assembled DNA Tweezer Nanomachine - New Approach for the Diagnosis of Spinocerebellar Ataxia(SCA3)</a></p> <p>The situation of SCA was described by Professor Edwin Chan during interviews. The difficulties encountered by patients from different stages of SCA were shared in a workshop with Hong Kong Spinocerebellar Ataxia Association. The SCA3 relates to either up or down regulation of four miRNAs biomarkers. A new approach for the diagnosis of SCA3 will be developed under this study. Under the mentorship of the University of Hong Kong, a DNA tweezer nanomachine is employed to detect target SCA3 biomarkers. When the desired miRNA hybridized to the recognition site on the tweezers, the nanomachine is turned from an open state to a closed state, which allows the assembly of the split strand G-quadruplex. The G-quadruplex acts as an aptamer and binds to hemin. The hemin-mediated peroxidase activity produces a color change as a signal. This alternative diagnostic method would have further implication on monitoring the onset and progress of SCA3.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>HKJS S</h2> <p> <b> Region: </b>Asia - Hong Kong<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 1 - #46 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room304 - 10:00 AM - 10:30 AM</p> <p><a href='https://2018.igem.org/Team:HKJS S'>Carbon dioxide Reduction to Methane using Modified Nitrogenase with PET decomposition as Primary Carbon Source</a></p> <p>Poly(ethyleneterephthalate) (PET) is a prevalent material which can is used in various applications, while bringing adverse effects to the environment. An enzyme, PETase, can degrade the highly-crystalized PET to mono-(2-hydroxyethyl) terephthalic acid (MHET), terephthalate and Bis(2-Hydroxyethyl) terephthalate. MHET is also further decomposed by MHETase to terephthalic acid and ethylene glycol (EG). EG can be further broken down in E. coli K-12 to produce carbon dioxide. Carbon dioxide, however, is a notable greenhouse gas. Using the mutagenesis of the amino acid residues of nifD in nitrogenase, the substrate binding site can be modified so that carbon dioxide can undergo the multi-electron reduction to methane. We propose an efficient carbon dioxide reduction system with the decomposition of PET as the primary carbon source. PETase, MHETase, and amino acid substituted nitrogen fixation genes in MoFe nitrogenase will be expressed in a fast-growing bacterium, E. coli.<p></div>
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<div class='column half_size'> <h2>Hong Kong HKU</h2> <p> <b> Region: </b>Asia - Hong Kong<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 2 - #117 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room311 - 11:00 AM - 11:30 AM</p> <p><a href='https://2018.igem.org/Team:Hong Kong HKU'>In vivo synthesis of therapeutic DNA nanostructures</a></p> <p>DNA nanotechnology has been evolving fast in the past few decades and has found various new applications in biomedicine. Currently, most functional DNA nanostructures are assembled in vitro, using chemically synthesized custom oligonucleotides. Our project aims to harness the synthetic ability of bacteria to accelerate the production of functional DNA nanostructures. Multiple DNA nanostructures with aptamers and strand-displacement toeholds were designed for breast cancer therapy. We characterized their actions in vitro and evaluated their therapeutic effects on human breast cancer cell line. To synthesize these DNA nanostructures, a reverse transcription system consisting of three plasmids was designed to operate inside E. coli. By demonstrating a simple and scalable biological production method of functional DNA nanostructures, we made a foundational advance in synthetic biology.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Hong Kong HKUST</h2> <p> <b> Region: </b>Asia - Hong Kong<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 3 - #190 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room304 - 11:30 AM - 12:00 PM</p> <p><a href='https://2018.igem.org/Team:Hong Kong HKUST'>From plastics to the power line</a></p> <p>Polyethylene is the most widely used plastic and arguably one of the most versatile materials to ever be synthesized. Its practicality and convenience however, have come at a great environmental cost. Polyethylene takes millennia to decompose, leeching harmful microplastics into the environment. We approached this pressing issue from a synthetic biology perspective, making use of E. coli engineered with genes encoding for laccase to degrade polyethylene into smaller alkane chains. Our team recognizes the opportunity to further advance this project by addressing another key issue ¬ñ energy. Using Shewanella oneidensis MR-1 strain's inbuilt extracellular electron transport mechanism in tandem with genes responsible for alkane metabolism derived from Desulfatibacillum alkenivorans, we will generate electricity from the metabolism of degraded polyethylene, hoping that it will one day help in solving the world's growing energy needs. Thus, our project serves as an integrated effort to simultaneously solve two crucial problems.<p></div>
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<div class='column half_size'> <h2>Hong Kong JSS</h2> <p> <b> Region: </b>Asia - Hong Kong<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 5 - #297 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room312 - 9:30 AM - 10:00 AM</p> <p><a href='https://2018.igem.org/Team:Hong Kong JSS'>A Synthetic Approach to Absorbing Copper Ions in Aquaponics</a></p> <p>Heavy metal pollution has been a hot issue among the society, copper is one of the most universal types of pollutant. In aquaponics, accumulation of copper ions is toxic to organisms. In sight of this, we aimed to create a cost-effective device for metal ions removal from water. In this project, metallothioneins, a type of protein capable of binding metal ions, was expressed in E. coli. Copper absorption capacity of the transformed bacteria is tested. From our results, E. coli can absorb copper ions at 10 mg/L and 2 mg/L. The is no significance difference between untransformed and transformed bacteria at 10 mg/L. At 2 mg/L, the transformed bacteria expressing Elsholtzia haichowensis Metallothionein 1 (EhMT1) slightly enhances the copper absorption ability. At last, we tried circulating E. coli inside dialysis tubings, receiving positive results, it is confirmed the idea using bacteria to remove copper ions in water is feasible.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Hong Kong-CUHK</h2> <p> <b> Region: </b>Asia - Hong Kong<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Diagnostics<br><b>Poster: </b>Zone 2 - #157 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room309 - 3:15 PM - 3:45 PM</p> <p><a href='https://2018.igem.org/Team:Hong Kong-CUHK'>RAPID(RNA Aptamer Probe for Influenza Detector)</a></p> <p>Transmissible diseases such as influenza have threatened the lives of people in Hong Kong and worldwide. However, while cold-flu differentiation remains difficult for non-experts, subtyping for epidemic control and treatment scheming is inaccessible for small clinics. In our project, we have constructed a sequence-specific RNA probe that increases its fluorescence by 10-fold upon target recognition. It is proven in a cell-free context and has the potential to expand to cellular applications. We also developed a mobile phone-based fluorometer coupled with its external software, collectively called Tracer. (The combination of hardware calibration and machine learning analysis may provide signal measurement with orthogonality and accuracy.) The tools can be combined into a user-friendly kit, allowing quick determination of their infection status using their nasal fluid, while the data obtained from a population of software users can be gathered for epidemic monitoring. This project provides a novel, rapid RNA-based influenza diagnostic system.<p></div>
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<div class='column half_size'> <h2>HSHL</h2> <p> <b> Region: </b>Europe - Germany<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Food & Nutrition<br><b>Poster: </b>Zone 3 - #170 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room312 - 10:00 AM - 10:30 AM</p> <p><a href='https://2018.igem.org/Team:HSHL'>Enabeling Tobacco plants to hyperaccumulate heavy metals</a></p> <p>Our challenge is to solve the problem of heavy metal polluted soil, especially in areas of high industrial use, such as mining. We enable a tabacco plant to hyperaccumulate cadmium and lead by transfering genes of arabidopsis halleri and adding other special abilities that support accumulation of heavy metals.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>HUBU-Wuhan</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Energy<br><b>Poster: </b>Zone 5 - #301 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room302 - 2:15 PM - 2:45 PM</p> <p><a href='https://2018.igem.org/Team:HUBU-Wuhan'>Building up biological parts in non-model bacterium Zymomonas mobilis for converting waste cartons into biofuels</a></p> <p>Although many genetic parts have been characterized, they are mostly from and for model species with limited studies on their compatibility. Additionally, significant amount of omics data has also been accumulated but not widely utilized yet. Zymomonas mobilis is a non-model Gram-negative ethanologenic bacterium with many desirable characteristics to favor the production of lignocellulosic biofuels. In this project, a reporter-gene system for Z. mobilis was established to effectively characterize genetic parts such as promoters and RBS. Moreover, promoter strength was systematically predicted based on omics datasets. These genetic parts including their compatibility were then characterized and further utilized for building an isobutanol-production module to convert campus waste paper cartons into renewable biofuels of ethanol and isobutanol. The success of our project will not only build up a reporter-gene system, basic and composite parts for the non-model species, but also provide renewable biofuels while protecting the campus environment.<p></div>
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<div class='column half_size'> <h2>HUST-China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Energy<br><b>Poster: </b>Zone 1 - #26 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room311 - 12:00 PM - 12:30 PM</p> <p><a href='https://2018.igem.org/Team:HUST-China'>Optopia</a></p> <p>To convert optical energy into electric energy in a clean and sustainable way, Optopia is designed as a photovoltaic system consisting of photosynthetic microorganism (Rhodopseudomonas palustris) and electrogenic microorganism (Shewanella oneidensis). Synthetic biology strategies are applied to the system to trigger production and export of lactate in Rhodopseudomonas palustris, as well as to improve efficiency of lactate utilization and extracellular electron generation in Shewanella oneidensis. Compared to Cyanobacteria, also a kind of photosynthetic microorganism but generating oxygen in photosynthesis, Rhodopseudomonas palustris serves as a better carbon resource provider for Shewanella oneidensis, not only because of its anaerobic photosynthesis maintaining an anaerobic environment required for extracellular electron generation in Shewanella oneidensis, but also due to its capacity of reusing the waste from Shewanella oneidensis. Hence, functioning as a compatible and mutually beneficial optical MFC (Microbial Fuel Cell), Optopia creates a novel and optimized approach to utilize clean resources through optical-electric conversion.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>HZAU-China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 4 - #248 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room208 - 3:15 PM - 3:45 PM</p> <p><a href='https://2018.igem.org/Team:HZAU-China'>Pyroptosis: a new approach for cancer therapy</a></p> <p>Pyroptosis is an inflammatory form of programmed cell death. The morphology of pyroptosis is characterized by cell swelling which causes the release of cytoplasmic contents. Recent studies have demonstrated that the N-terminal domain of GasderminD protein accounts for pyroptosis of the host cell, which may be exploited for tumor suppression. In our project, we redesign Salmonella to act as a delivery vehicle that can target tumor cells and replicate in their cytoplasm. By inducing the bacterial expression of the N-terminal domain of GasderminD, bacteria are led to lysis and release this protein into the cytoplasm of tumor cell and then induce pyroptosis to the tumor cell by making membrane pores. The lysate of cell rupture during pyroptosis destroys the tumor microenvironment and attracts immune cells into tumor bed to kill tumor cells. Our project which aims to induce pyroptosis to tumor cells provides a new approach for cancer therapy.<p></div>
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<div class='column half_size'> <h2>HZNFHS China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 5 - #261 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room306 - 9:30 AM - 10:00 AM</p> <p><a href='https://2018.igem.org/Team:HZNFHS China'>Genetic Engineered Germ For Improving the Soil Environment of Tea Trees and More</a></p> <p>Our Project is finding effective gene in some particular gems and applying them to another germ to created a engineered germ for improving the soil environment.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>ICT-Mumbai</h2> <p> <b> Region: </b>Asia - India<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 1 - #56 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room312 - 3:15 PM - 3:45 PM</p> <p><a href='https://2018.igem.org/Team:ICT-Mumbai'>SmartSoil: Rooting for Sustainable Agriculture</a></p> <p>Plants secrete many chemicals in the soil around their roots. These exudates can act as molecular signals for microorganisms in the rhizosphere, which can in turn modulate gene expression. We wish to exploit this natural phenomenon to engineer microorganisms to sense and respond to plants. A synthetic symbiotic association that helps plants grow better and resist diseases will reduce dependence on artificial fertilizers and pesticides. Toward this end, we are studying changes in gene expression in the common soil bacterium, Bacillus subtilis, in response to root exudates of rice, wheat, tomato and soybean plants. As a case study, we are constructing a genetic amplifier using an exudate-inducible promoter to produce phosphatase, which will help solubilize organic phosphate present in the soil. This represents an advance toward smart soil management practices and sustainable agriculture.<p></div>
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<div class='column half_size'> <h2>IISc-Bangalore</h2> <p> <b> Region: </b>Asia - India<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 1 - #79 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room310 - 12:00 PM - 12:30 PM</p> <p><a href='https://2018.igem.org/Team:IISc-Bangalore'>PhageShift: Improving treatment of bacterial infections through novel modifications to conventional phage therapeutics</a></p> <p>Bacteriophages have long been proclaimed as the answer to antibiotic resistant bacterial infections. However, simultaneous resistance to phages and antibiotics is a concerning possibility. Anticipating this problem, we have developed an in-silico protein modification algorithm that hard-codes mutual exclusion of antibiotic and phage resistance. An engineered phage with high affinity for phosphoethanolamine, the molecule that confers colistin resistance, has been developed as a proof-of-concept. This system has potential applications in drug delivery, ligand extraction and study of bacterial membrane proteins. We are also building a phage mediated immune recruitment system that ensures removal of the pathogen without significant toxin release - a fatal condition in immuno-compromised individuals. This is accomplished by a monocyte chemokine encoded into a lysis deficient phage genome that recruits phagocytic immune cells to the site of infection. PhageShift thus takes a leap forward in addressing potential problems with phage therapeutics before they arise.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>IISER-Bhopal-India</h2> <p> <b> Region: </b>Asia - India<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 5 - #267 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room312 - 11:30 AM - 12:00 PM</p> <p><a href='https://2018.igem.org/Team:IISER-Bhopal-India'>MethNote: A prototype of methane biosensor constructed by genetically modifying Pichia pastoris</a></p> <p>Methane is a Greenhouse gas associated with Global Warming, and green methods are desired for its real-time monitoring. Thus, we have developed the prototype of a robust field-applicable methane biosensor, MethNote. We found an enzyme-complex methane monooxygenase(MMO) from Methylococcus capsulatus, a methanotrophic bacterium, that converts methane to methanol. We expressed soluble-MMO in the methylotrophic yeast, Pichia pastoris, which harbors a plasmid expressing the reporter gene under a methanol inducible promoter AOX. Thus, linking methane uptake to a reporter gene expression generates the proposed methane biosensor. The inclusion of sMMO pathway was also checked by metabolic modeling. The constructed part will be a useful contribution to the iGEM repository. A commercial design of MethNote will find widespread applications in environmental monitoring of methane. In future studies, we also anticipate an additional application of Mut- strain of P. pastoris expressing sMMO in biofuel production through methanol sequestration.<p></div>
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<div class='column half_size'> <h2>IISER-Kolkata</h2> <p> <b> Region: </b>Asia - India<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 2 - #159 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room207 - 4:15 PM - 4:45 PM</p> <p><a href='https://2018.igem.org/Team:IISER-Kolkata'>BACMAN</a></p> <p>Arsenic contamination of ground water is a serious issue in West Bengal (India). Each year a large population falls victim to severe Arsenic poisoning due to ingestion of heavy doses of Arsenic through water and food over years. Small amounts of water can be purified before drinking using several available techniques such as chemical filtration kits etc. but no decontamination techniques exist to remove Arsenic uptaken by food crops (rice) or fishes through polluted water used to raise them in paddies or ponds. We, Team IISER-Kolkata plan to design a probiotic bacteria that can efficiently intake and sequester Arsenic at the physico-chemical conditions existing in the human gut. We aim to design an affordable and effective pill to administer the probiotic microbes into the gut. The microbes will then colonize in the gut and outcompete GI epithelia at Arsenic abosorption thus shielding humans from accumulating the ingested heavy-metal.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>IISER-Mohali</h2> <p> <b> Region: </b>Asia - India<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Food & Nutrition<br><b>Poster: </b>Zone 4 - #236 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room311 - 2:15 PM - 2:45 PM</p> <p><a href='https://2018.igem.org/Team:IISER-Mohali'>FearOmone: Cat pheromone based Bio-synthetic deterrent to minimize post harvest losses caused by rat manifestation.</a></p> <p>FearOmone seeks to exploit the innate fear of murines for the cats. Our challenge is to create genetically engineered yeast producing cat pheromone-based biosynthetic deterrent and prepare a device capable of diffusing this cat pheromone to areas surrounding grain storage facilities, thereby keeping murines away. Our first aim is to transform our host system, S. cerevisiae, with necessary synthetic gene circuits which will result in a recombineered yeast that mimics the cat nephron pathway for producing felinine. Next, we will conduct controlled experiments in the form of murine behavior assays to test the effectiveness of our synthetically derived felinine as a rat/mouse deterrent. Finally, we intend to design user-friendly and field-effective hardware to integrate with our yeast cells and run simulations on field data to understand murine behavior in realistic conditions and over a reasonable time-frame, with the intention of designing software for optimal dispersal of our FerOmone.<p></div>
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<div class='column half_size'> <h2>IIT Delhi</h2> <p> <b> Region: </b>Asia - India<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 2 - #101 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room310 - 5:15 PM - 5:45 PM</p> <p><a href='https://2018.igem.org/Team:IIT Delhi'>Back & Forth with Recombinases</a></p> <p>With the growth of synthetic biology, there has been an increase in the development of digital synthetic circuits, which requires biological logic gates that can accept a binary input and generate a suitable binary output. Often biological systems are unable to provide sharp and accurate input to output response due to reasons like noise, growth factors etc. Hence there exists a need of robust and reliable modules that can transform the analog and stochastic behaviour of biology into a digital response. We aim to develop recombinase based elementary constructs that would allow development of complex circuits with specialized functions with greater ease. Recombinases are enzymes that trigger site-specific recombination to perform excision/incision or inversion of genetic circuits, to produce the desired gene expression. Our project involves use of serine based recombinases to develop a novel recombinase based toolkit of elementary circuits such as feedforward loop, feedback loop etc.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>IIT Kanpur</h2> <p> <b> Region: </b>Asia - India<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 4 - #243 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room302 - 10:00 AM - 10:30 AM</p> <p><a href='https://2018.igem.org/Team:IIT Kanpur'>SWASH: Hacking E.Coli to clean the cleansing agent</a></p> <p>There are about 2 billion people worldwide who don't even have access to clean drinking water. This has resulted in a growing need for solutions to tackle the problem of water pollution. One of the major chemical wastes discharged in sewage and as industrial effluents are detergents. This year we plan to provide a reliable and robust solution to this problem by focusing on sodium dodecyl sulfate(SDS) which is an anionic biodegradable surfactant and is the major component of detergents used around the world. Our project is concerned with developing a synthetic pathway in E.coli for extracellular expression of enzyme alkyl-sulfatase originally found in bacteria Pseudomonas aeruginosa to degrade SDS into commercially viable 1-dodecanol. As part of our project, we will also develop a bio-sensor to precisely quantify and characterize the by-products obtained as a result of SDS degradation.<p></div>
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<div class='column half_size'> <h2>IIT-Madras</h2> <p> <b> Region: </b>Asia - India<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 2 - #120 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room310 - 10:00 AM - 10:30 AM</p> <p><a href='https://2018.igem.org/Team:IIT-Madras'>ADaPtat1on : Expanding Toolkit for Acinetobacter baylyi</a></p> <p>Acinetobacter baylyi is a gram-negative, soil-dwelling, non-pathogenic, naturally competent and nutritionally versatile organism especially known for its ability to degrade aromatic compounds. However, only a few tools are available for its gene manipulation. This year, we plan to expand the toolkit for A. baylyi ADP1 by making a synthetic promoter library along with codon optimized fluorescent reporter proteins to achieve better control over its expression rates. The codon table is not available for this organism. So we obtained sequence data of well-characterised proteins of this organism by filtering manually putative and hypothetical sequences and used this data to generate the codon table using CUTE - a tool of ChassiDex. The codon optimisation is done manually by replacing the less frequent codons with high-frequency codons based on the generated table. This can potentially open up various new exciting synthetic biology opportunities with this unexplored organism.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Imperial College</h2> <p> <b> Region: </b>Europe - United Kingdom<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 2 - #116 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room310 - 4:45 PM - 5:15 PM</p> <p><a href='https://2018.igem.org/Team:Imperial College'>PixCell: Electronic Control of Biological Patterning</a></p> <p>Engineering complex biological systems requires precise control of gene expression. Current biological control systems fail to provide the reversible and programmable spatiotemporal control of electrical systems used in industry. Electrogenetics is an emerging field of synthetic biology investigating electronic detection and control of gene expression. Presented here is the development of the first aerobic electrogenetic control system in E. coli. It functions through altering transcriptional activation of the SoxR/PsoxS redox-signalling system by controlling the oxidation of redox-mediators using an electrode. The potential of this system for precise spatial control is demonstrated using an affordable, custom electrode array to induce pattern formation in a lawn of cells. Patterning was a necessary condition for the evolution of complex multicellular life, and as such the programmable patterning demonstrated serves as an essential tool for the development of multicellular synthetic biology.<p></div>
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<div class='column half_size'> <h2>iTesla-SoundBio</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 1 - #77 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room208 - 10:00 AM - 10:30 AM</p> <p><a href='https://2018.igem.org/Team:iTesla-SoundBio'>Factor C The Difference: A Synthetic Biology Alternative to the LAL Endotoxin Detection Assay</a></p> <p>Many gram-negative bacteria naturally create compounds called endotoxins, which induce pathological symptoms including septic shock in humans. Limulus Amebocyte Lysate (LAL) testing, the gold-standard endotoxin detection test, is used in virtually every area of biomedical product development. The test is derived from horseshoe crab blood, including coagulation Factor C, the primary effector protein. Many horseshoe crabs die each year due to the bleeding process, straining populations and ecosystems along the US Atlantic Coast and in Asia, where it is less sustainable. Moreover, LAL testing is expensive, creating a barrier to biomedical innovation in low-resource settings. For these reasons, our team sought to synthesize a codon-optimized sequence of Factor C and integrate it into Bacillus subtilis (a gram-positive bacterium) using a pAX01 backbone with a xylose inducible promoter. In the future, we hope to design a detection mechanism to signal for the cleavage of Factor C and the presence of endotoxin.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Jiangnan</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Manufacturing<br><b>Poster: </b>Zone 5 - #274 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room304 - 2:15 PM - 2:45 PM</p> <p><a href='https://2018.igem.org/Team:Jiangnan'>SuperVIP-Suspended universal plasma-enabled rapid vaccine production</a></p> <p>Vaccine is one of the most cost-effective public heath solution, with cell-based approach being a promising production strategy. We are devoted to establish a cell line with self-owned intellectual property and feasible for rapid production of a broad spectrum of viruses, with the aim of reducing the cost of cell based virus production in the heath care sector. By constructing two biobricks and enabling three features to our chassis cells, we considerably reduced virus production cost by increasing virus titer per cell and virus-producing cells per fermentor, and broadening cells' virus sensitivity spectrum. We used computational modeling to explore genes for biobrick construction and cold atmospheric plasma ejecting device to further increase virus titer. We proved the significance of our project through systematically examining the needs of vaccine production companies including our close collaborator DaBeiNong, and disseminated knowledge related to vaccine and synthetic biology to the public.<p></div>
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<div class='column half_size'> <h2>Jiangnan China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Manufacturing<br><b>Poster: </b>Zone 1 - #50 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room207 - 9:30 AM - 10:00 AM</p> <p><a href='https://2018.igem.org/Team:Jiangnan China'>Anti-Man</a></p> <p>Lactic acid bacteria are the most promising microorganisms to act as live vaccines and microbial cell factory which can produce various chemicals. During fermentation processing, they suffer from various stress conditions, especially acid and cold stress.Therefore, we aim to develop an ideal food-safe grade microorganism with enhanced acid and cold tolerance. Genome mutagenesis combined with high-throughput technologies was performed on Lactococcus lactis NZ9000 to screen acid tolerance strain. Next, comparative transcriptomics analysis was performed on mutant and parent strain to investigate the response mechanisms of microbial cells during acid stress. Based on the proposed acid tolerance mechanisms, one new anti-acid component-msmK was discovered. Also, an anti-cold gene cspD2 was selected. The constructed recombinant strain L.lactis NZ3900/pNZ 8149-MsmK-CspD2 shows a significant survival advantage compared with L.NZ3900/pNZ 8149, which means our product exhibited enhanced acid and cold tolerance. This study provides valuable insight into the development of robust industrial strains.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Jilin China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 4 - #252 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room208 - 2:45 PM - 3:15 PM</p> <p><a href='https://2018.igem.org/Team:Jilin China'>The collection of synthetic RNA-based thermosensors with different sensing temperatures</a></p> <p>Many strategies could be used by bacteria to coordinate temperature-dependent gene expression. A well-known class of biological temperature sensitive element is RNA-based thermosensor, which is thermoregulatory RNA sequence in the 5'-untranslated region of mRNAs. RNA thermosensors could induce equilibrium shift between closed and open conformations of the translation initiation region under temperature variation condition, and lead to mRNA degradation or ribosome accessibility, thereby controlling the efficiency of translation initiation. However, natural RNA-based thermosensors are difficult to be engineered with the narrow sensing temperature range. Therefore, this year based on free-energy method, we designed a series of synthetic RNA-based thermosensors, which can be engineered easily with broader sensing range. Then, we predicted their theoretical sensing temperature, detected the practical threshold by experimenting setting temperature gradient, and built the standard parts collection.<p></div>
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<div class='column half_size'> <h2>JMU Wuerzburg</h2> <p> <b> Region: </b>Europe - Germany<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Diagnostics<br><b>Poster: </b>Zone 1 - #28 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room309 - 11:00 AM - 11:30 AM</p> <p><a href='https://2018.igem.org/Team:JMU Wuerzburg'>Test Tonic – a rapid diagnostic device for malaria</a></p> <p>Malaria affects 200 million people every year as reported by the WHO. This disease is caused by different Plasmodium species, leading to different types of malaria. Therefore a successful therapy for malaria requires rapid identification of the species affecting the patient. We engineered Test Tonic, a qPCR-based diagnostic device, capable for detecting Plasmodium DNA. Test Tonic can not only detect Plasmodium in general but also uses our specifically engineered and optimized primer/probe pairs for the identification of individual Plasmodium species. As a low resource alternative to qPCR we investigate Recombinase Polymerase Amplification (RPA) for our Malaria diagnosis system. Providing isothermal DNA amplification, RPA avoids the need of an expensive thermocycler. These benefits of a quick, economically priced, easy to use and portable malaria test make Test Tonic suitable for the application in traveling situations and in areas without proper infrastructure and energy supply.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>JNFLS</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 5 - #281 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room311 - 12:00 PM - 12:30 PM</p> <p><a href='https://2018.igem.org/Team:JNFLS'>HCV, Aparecium!</a></p> <p>We aim to develop a biosensor for detecting HCV by the nucleic acid aptamer, and the specific detection of trace HCV could be realized by rolling circle amplification, which has great significance to shorten the window period of HCV in clinic transfusion. HCV C gene was expressed, and collected secreted HCV C protein was used to bind specifically with the nucleic acid aptamer. Using the competing reaction of the target antigen, a highly sensitive fluorescent aptamer sensor was developed based on the rolling circle replication. When there is no target antigen, the aptamer complementary sequence binds with aptamer instead of the padlock probe; whereas when the aptamer probe binds with the target antigen, the complementary sequence hybridizes with padlock probe, which triggers rolling circle amplification reaction. Under the action of DNA ligase, the padlock probe is further cyclized and a rolling circle amplification occurs under the action of DNA polymerase.<p></div>
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<div class='column half_size'> <h2>KAIT JAPAN</h2> <p> <b> Region: </b>Asia - Japan<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Information Processing<br><b>Poster: </b>Zone 3 - #175 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room306 - 10:00 AM - 10:30 AM</p> <p><a href='https://2018.igem.org/Team:KAIT JAPAN'>Challenge to suspended animation of cells</a></p> <p>Conservation of cells, which is indispensable for regenerative medicine, now depends on freezing method. However, the freezing method has a low cell survival rate. Our idea is to preserve cells for a long time using suspended animation. Our definition of the state of cells suspended animation is state of hypometabolism followed by ATP depression, and then returned to the original state. H‚ÇÇS is believed to be involved in this suspended animation process at the individual level. The objective of our project is to let the E.coli respond to the signal of the cell, and secrete the necessary amount of H‚ÇÇS synthase (CTH) for the state of suspended animation to lower the metabolism. The secretion of CTH is regulated by RhlR . When the cells to be preserved become the state of suspended animation, the secretion of CTH from E.coli will stop, and most of the E.coli will also be suicided.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>KCL UK</h2> <p> <b> Region: </b>Europe - United Kingdom<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 1 - #37 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room311 - 9:00 AM - 9:30 AM</p> <p><a href='https://2018.igem.org/Team:KCL UK'>Developing a novel tool to overcome antibiotic resistance by regulating gene expression in bacteria</a></p> <p>Antibiotic resistance is a major concern worldwide, estimated to cause 1 death every 4 minutes. Antibiotics for fatal infections such as tuberculosis and pneumonia have become less effective due to bacterial resistance to drug-based treatments. This phenomenon has led pharmaceutical companies to develop new antibiotics to try overcome this problem. However, this is costly and contributes to the emergence of multi-resistant bacterial strains. Throughout the years bacteria have developed mechanisms to resist antibiotics such as DNA mutagenesis, cell wall modification and other; most involve various bacterial proteins that have been modified or repurposed to protect bacteria. It has been shown that down-regulating these proteins' expression helps maximise the effects of antibiotics. Therefore, our team aim to engineer a library of sRNAs, providing a platform for new tools to regulate gene expression. Our approach therefore synergises with current antibiotic treatment regimes, creating an innovative therapeutic tool.<p></div>
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<div class='column half_size'> <h2>KUAS Korea</h2> <p> <b> Region: </b>Asia - Korea<br><b>Section: </b>Undergraduate<br> <b>Track: </b>New Application<br><b>Poster: </b>Zone 2 - #139 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room310 - 11:30 AM - 12:00 PM</p> <p><a href='https://2018.igem.org/Team:KUAS Korea'>Bacterial Evolutionary Game Simulation (BEGS) for Snowdrift, Harmony, Stag Hunt and Prisoner's Dilemma Games</a></p> <p>How does microbial community perpetuate or perish? Like human society, in nature, microorganisms not only compete but also cooperate with each other for a successful establishment of a microbial community. The major goal of our project is to construct an accessible evolutionary game model using a synthetic microbial population controlled by genetic circuits. Here, we use E. coli to form a microbial population composed of the "cooperator" and the "cheater". "Cooperator" which displays β-glucosidase on the cell surface breaks down cellobiose into glucose. This enzymatic activity allows both "cooperator" and "cheater" to share glucose as an energy source (public goods). "Cheater" which expresses GFP is now able to proliferate within microbe population by glucose from cooperator. Based on the combination of mathematical modeling and experiments, we are going to find critical parameters for evolutionary games such as harmony, snow-drift and prisoner’s dilemma for controlling population dynamics of the microbial community.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Kyoto</h2> <p> <b> Region: </b>Asia - Japan<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 3 - #180 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room310 - 4:45 PM - 5:15 PM</p> <p><a href='https://2018.igem.org/Team:Kyoto'>Swallomyces cerevisiae ~Building a biological desalination system~</a></p> <p>The conformation, kinetics, and binding of macromolecules are highly sensitive to the ion environment so we must control it to succeed biological research. Thus, there is demand of ionic control tool which supports bio-sensing and bio-remediation for research usage. So we addressed to develop such a biological deionization tool. This year we focused on Na+ which is basic ion in biology, and desalination system can be realized by salvaging Na+ in solution as paste of Saccharomyces cerevisiae by applying two attributes. One is highly Na+ uptake of their plasma membrane and vacuolar by transfer of transporters. The other is surface interaction aggregation system using SdrG-Fgβ protein connection through surface display. In addition, we calculate initial amount of our yeast to adjust to desired concentration by reconstructive membrane transport mathematical model. Furthermore, this tool can be applied to bioremediation and expanded to other ions.<p></div>
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<div class='column half_size'> <h2>LACAS BioBots</h2> <p> <b> Region: </b>Asia - Pakistan<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 1 - #21 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room310 - 2:15 PM - 2:45 PM</p> <p><a href='https://2018.igem.org/Team:LACAS BioBots'>No title</a></p> <p>No abstract<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Lambert GA</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 2 - #156 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room302 - 3:15 PM - 3:45 PM</p> <p><a href='https://2018.igem.org/Team:Lambert GA'>Captivate: Capture the Data & Activate the Response</a></p> <p>Vibrio cholerae, a pathogenic waterborne bacteria, impacts millions of people annually. Cases are most prevalent in developing countries with a lack of practical diagnostic methods and clean water. Lambert iGEM created a proactive, inexpensive diagnostic kit for V. cholerae detection utilizing frugal hardware devices and toehold switches. These riboregulators activate gene expression in response to predetermined RNA sequences. Engineering E. coli to detect V. cholerae, we targeted ctxB, a non-toxic subunit of a gene specific to all pathogenic V. cholerae. Our Chrome-Q system quantifies aquatic V. cholerae presence utilizing HSV values while the Color-Q app inputs data into our machine learning model, CALM. Utilizing rainfall, conflict, and cholera case/death data, CALM is able to accurately model the Yemeni V. cholerae outbreak, forecasting outbreaks weeks in advance. With this diagnostic kit, Lambert iGEM addresses V. cholerae epidemics by predicting outbreaks, thus providing low-cost sustainable diagnostic tools while enhancing quality prediction.<p></div>
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<div class='column half_size'> <h2>Leiden</h2> <p> <b> Region: </b>Europe - Netherlands<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 3 - #193 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room306 - 9:00 AM - 9:30 AM</p> <p><a href='https://2018.igem.org/Team:Leiden'>Fifty Shades of Stress: A colourful screening platform for detecting bacterial cell stress</a></p> <p>The number of drug-resistant pathogenic bacteria is rising at an alarming rate, while no new classes of antibiotics have been discovered in the past three decades. We tackle this twofold problem using an innovative open-source screening platform and an extensive societal outreach program aimed at spreading awareness of antimicrobial resistance. Current drug discovery efforts suffer from tunnel vision: screening is limited to lethal compounds. Our project aims to enable rapid discovery of compounds that stress bacterial cells, which can be used to establish novel synergistic combination therapies. Such combination therapies have proven to reduce resistance development in HIV and cancer treatments. In our project, we created an E. coli reporter strain that produces fluorescent proteins in response to distinct classes of cellular stress, by utilising promoters which become activated under specific stressful conditions. This specificity allows for determination of the mechanism of action and for establishment of synergistic combination therapies.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Lethbridge</h2> <p> <b> Region: </b>North America - Canada<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 4 - #233 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room304 - 2:45 PM - 3:15 PM</p> <p><a href='https://2018.igem.org/Team:Lethbridge'>VINCEnT: A modular Viral-Inspired Novel Cargo Encapsulation Toolkit for targeted delivery of molecules to cells</a></p> <p>The 2018 Lethbridge iGEM team is developing a Viral-Inspired Novel Cargo Encapsulation Toolkit ('VINCEnT') for simple design and assembly of protein nanocompartments (PNCs). This standardized toolkit can be used to produce custom PNCs for targeted delivery of various cargos including nucleic acids, proteins, and small molecules to desired cell types. PNC design will be facilitated by our software platform, enabling informed selection of cell-targeting surface modifications, encapsulation proteins, and cargo-loading approaches tailored to the intended application. PNCs have wide-ranging utility from targeted drug delivery and gene therapy to materials synthesis and distribution of biological control agents. With the simplified design, standardized protocols, and modular components, less experienced users will be able to design and produce PNCs in a basic laboratory environment. We have also critically examined the 'dual-use' implications of making custom PNC production more accessible and have developed a risk assessment rubric for VINCEnT to help mitigate potential threats.<p></div>
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<div class='column half_size'> <h2>Lethbridge HS</h2> <p> <b> Region: </b>North America - Canada<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 3 - #174 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room310 - 3:15 PM - 3:45 PM</p> <p><a href='https://2018.igem.org/Team:Lethbridge HS'>Cu Later: The Capture and Removal of Metal Ions from Solution Using Phage Capsid Display</a></p> <p>Tailings ponds enclose 176 square kilometers of oil extraction waste in Alberta. They pose a serious issue, as they contain toxic products such as heavy metals that negatively affect the environment. Due to the difficulty of its separation, the potentially useful metals present in these tailings ponds are rendered useless. However, our system of bacteria and bacteriophage demonstrates a possible solution. The target metal being copper, we will use a copper-binding protein on bacteriophage capsids to bind the copper. Then, elastin-like polymers attached between the copper binding proteins and the capsid proteins will be used for inducible precipitation, bringing the metals to the bottom of the solution and allowing them to be repurposed. Cu Later is an innovative project by turning the waste in oil sands into opportunity, in addition to cleaning up the environment.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Linkoping Sweden</h2> <p> <b> Region: </b>Europe - Sweden<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Manufacturing<br><b>Poster: </b>Zone 5 - #262 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room208 - 11:00 AM - 11:30 AM</p> <p><a href='https://2018.igem.org/Team:Linkoping Sweden'>The Folding Factory</a></p> <p>The expression of proteins in bacteria is a way to enable production of biofuels, large scale production in the pharmaceutical industry, and research. However, mass production of certain proteins in bacteria is hindered by protein size or the complex folding structure of proteins. Protein folding has been shown to be assisted by chaperones, a protein aiding the expression of other proteins in bacteria. We illustrate this by co-expression of GroES and proteins that are problematic to express in E-coli. GroES is mostly known as a co-chaperone, but some studies indicate that it has a folding property on its own. We have aimed at investigating this further in order to create a system for expressing proteins in bacteria. We hope that our findings will give insight into sustainable ways for industrial protein production.<p></div>
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<div class='column half_size'> <h2>Lubbock TTU</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Manufacturing<br><b>Poster: </b>Zone 4 - #219 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room309 - 9:30 AM - 10:00 AM</p> <p><a href='https://2018.igem.org/Team:Lubbock TTU'>Expanding the Synthetic Biology Toolkit for Polyamine Production</a></p> <p>The metabolic engineering of E. coli has significant potential to provide an accessible cellular factory for the in vivo production of essential chemicals during space exploration. Recognizing the versatility of using E. coli for bio-manufacturing during space travel, we investigate applications in polyamine production. In particular, a diamine known as putrescine with medicinal and materials applications. To expand on earlier improvements of the product yield for putrescine in E. coli, we explore modifying the W3110 strain of K-12 E. coli. Additionally, we explore the use of TX-TL cell-free synthetic biology to design transcription factor-based biosensors for the detection of improved putrescine yield and to monitor other small molecules of interest. With these strategies we hope to improve the yield of putrescine in E. coli and to expand the synthetic biology toolkit for metabolic engineering.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Lund</h2> <p> <b> Region: </b>Europe - Sweden<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Manufacturing<br><b>Poster: </b>Zone 3 - #172 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room306 - 12:00 PM - 12:30 PM</p> <p><a href='https://2018.igem.org/Team:Lund'>Using synthetic biology to increase recombinant protein yield via co-expression of Vitreoscilla hemoglobin</a></p> <p>The use of Vitreoscilla hemoglobin (VHb) to increase recombinant protein yield via co-expression has been proven successful in various applications. However, recent studies have indicated that the success is largely dependent on the choice of associated expression system. While there are many ways of regulating VHb levels, there is to this end no simple nor standardized way of tuning the expression levels for a certain application. We present a set of inserts containing VHb expressed at various levels, created by utilizing the library of constitutive Anderson promoters. The effect on the cell growth was investigated by optical density measurements. The increase in recombinant protein yield was determined by co-expressing green fluorescent protein (GFP) and measuring fluorescence intensity by flow cytometry. Preliminary data suggest a positive correlation between VHb expression level and GFP fluorescence intensity. Further studies include expression under varying oxygen availability and expression of other target proteins.<p></div>
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<div class='column half_size'> <h2>LZU-CHINA</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 4 - #246 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room309 - 4:15 PM - 4:45 PM</p> <p><a href='https://2018.igem.org/Team:LZU-CHINA'>New therapy for gastric cancer based on TIL cells-exosomes mechanism</a></p> <p>Gastric cancer is one of the most popular digestive malignant carcinomas in the world. Exosomes are cell-derived nanovesicles and act as vesicles for delivering micromolecular like miRNA. Here, we turn HEK 293 T cells and MGC803 cells into a manufacturing factory, massively producing exosomes with our target miRNA in it,whose function is related to reduce the viability of tumor cells.The three miRNA is obtained by bioinformation analysis.To be continued, considering the heterogeneity of tumor cells, we use inducible promoter to active three miRNAs separately. By changing the inducers' concentration, we want to grope optimum functional concentration range of miRNAs. Finally, we hope that this system can be used in tumor infiltrating T cells. TIL is an inactive T lymphocyte in tumor tissue whose function is inhibited because of tumor microenvironment. If the TIL were armed with our controllable miRNAs, a new therapy for gastric cancer treatment would appeared.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Macquarie Australia</h2> <p> <b> Region: </b>Asia - Australia<br><b>Section: </b>Undergraduate<br> <b>Track: </b>New Application<br><b>Poster: </b>Zone 1 - #20 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room207 - 10:00 AM - 10:30 AM</p> <p><a href='https://2018.igem.org/Team:Macquarie Australia'>Chlorophyll-induced Vesicles (ChiVes) for metabolic engineering and protein purification</a></p> <p>Recombinant proteins have diverse and important therapeutic and industrial utility, at present their purification is costly, time and labour intensive. Our research simplifies this purification process by sequestering desired proteins into synthetic vesicles, allowing for bulk purification via an operationally simple centrifugation step. These synthetic vesicles have been engineered into the expression host E.Coli. As previously shown in plants and algae, vesicle formation occurs spontaneously in the presence of chlorophyll and the enzymes needed for its biosynthesis. Cells grown in the dark recruit phospholipids to form crystalline aggregates known as prolamellar bodies. Subsequent exposure of the cells to light results in the conversion of these aggregates to vesicles. By mimicking this natural process, our cells can be selectively induced to capture valuable recombinant products in easily isolable vesicles. Additionally, through computational modelling and our human practices 'customer discovery' toolkit, we have validated the viability and potential impact of this research.<p></div>
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<div class='column half_size'> <h2>Madrid-OLM</h2> <p> <b> Region: </b>Europe - Spain<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Open<br><b>Poster: </b>Zone 2 - #112 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room207 - 3:15 PM - 3:45 PM</p> <p><a href='https://2018.igem.org/Team:Madrid-OLM'>Internet of BioThings</a></p> <p>Society demands a better understanding of its environment. We require information about our surroundings, from the traffic density to the temperature distribution in the city we live. Generating and interconnecting this big amount of data is what we call the Internet of Things (IoT). There is no standard way of taking biological measurements within the frame of traditional IoT (i.e. the concentration in the air of viruses, toxins, allergens, etc). It is due to the instability of the reactives, the complexity of automating the laboratory protocols and the need of highly sensitive devices. Additionally, the economic cost of biological devices is remarkably high in comparison to traditional IoT gadgets. And this feature is key, as it is mandatory to extract data from a huge number of nodes. Our project deals with this issue, bringing together microfluidics, aptamer-based sensors, an affordable electrochemical metrological system and a big ammount of love.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Makerere University</h2> <p> <b> Region: </b>Africa - Uganda<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 4 - #241 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room311 - 10:00 AM - 10:30 AM</p> <p><a href='https://2018.igem.org/Team:Makerere University'>Plastic biodegradation</a></p> <p>Plastics are waste products that pollutes the environment we live in more especially clogging the sewage system in urban centers and toxins from decomposed plastics are introduced into ecological systems that humans often manipulate for food. A biological approach to resolving this problem is favorable because of its practicality and efficiency. Ideonella sakaiensis is a bacteria that naturally decomposes polyethylene terephthalate, we have decided to genetically modify E. coli cells to model the plastic degradation process by adding the Lipase and Chlorogenate Esterase genes from Ideonella sakaiensis into E. coli bacterial cells.<p></div>
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<div class='column half_size'> <h2>Manchester</h2> <p> <b> Region: </b>Europe - United Kingdom<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Food & Nutrition<br><b>Poster: </b>Zone 2 - #143 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room311 - 2:45 PM - 3:15 PM</p> <p><a href='https://2018.igem.org/Team:Manchester'>Man-Cheester: Development of Listeria monocytogenes biosensor for use in cheese starter cultures.</a></p> <p>Listeria monocytogenes is a Gram-positive, rod-shaped, food-borne bacterium, capable of causing the rare, but potentially fatal, disease listeriosis. L. monocytogenes can replicate at temperatures as low as 0°C, allowing it to survive in industrial and domestic refrigerators. L. monocytogenes is often found in soft cheeses, making many varieties of cheese unavailable to those who are immunosuppressed. Man-Cheester aims to introduce the agr quorum sensing system from L. monocytogenes into bacteria used in the cheese making process. On detection of AIP, a key quorum sensing molecule of L. monocytogenes, a colour change will occur, causing the cheese to turn purple and alerting the consumer to its contamination. Our concept could be further developed to include other sources of L. monocytogenes contamination, such as meats, vegetables or kitchen surfaces, to prevent as many cases of listeriosis as possible.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Marburg</h2> <p> <b> Region: </b>Europe - Germany<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 1 - #74 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room304 - 3:15 PM - 3:45 PM</p> <p><a href='https://2018.igem.org/Team:Marburg'>Vibrigens - Accelerating Synbio: Establishing Vibrio natriegens as the new chassis organism for synthetic biology</a></p> <p>Waiting for cells to grow is an enormous time sink for synthetic biologists. Cloning cycles with the current standard, Escherichia coli, typically take up to three days. In our project Vibrigens - Accelerating Synbio, we established the tools to turn Vibrio natriegens into the next generation chassis for synthetic biology, ready to be used reliably. By taking advantage of its unbeaten doubling time of 7 minutes, we substantially reduced waiting time and made one-day-cloning a reality. We built and characterized a flexible golden-gate-based part collection, consisting of more than 100 parts, which enables the creation of complex pathways in a short amount of time. Our engineered V. natriegens strains VibriClone and VibriExpress are designed for cloning and protein expression applications, respectively. Moreover, we established the first synthetic metabolic pathway in this organism by producing the platform chemical 3-Hydroxypropionate and along the way developed an accelerated workflow for metabolic engineering.<p></div>
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<div class='column half_size'> <h2>McGill</h2> <p> <b> Region: </b>North America - Canada<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 4 - #226 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room310 - 9:30 AM - 10:00 AM</p> <p><a href='https://2018.igem.org/Team:McGill'>Synnotch and Tandem ScFv in Novel System Granting Multi-Specificity to Phagocytic Immune Cells in Cancer</a></p> <p>The Notch family of proteins are kinetically activated cell surface receptors found in eukaryotes which can be modified to form synthetic notch (SynNotch) receptors. Our team has designed a gene construct activated by SynNotch to produce a downstream product of choice. Through the transfection of immune cells with our SynNotch system and tandem ScFV's antibodies specific for both SynNotch and a target of interest, one can target many different cancers with the same population of transfected cells. The system provides specificity to one population of cells through use of a single tandem ScFV, and multi-specificity through the use of multiple ScFV's. The downstream product is modular and can be switched to activate cytokine signaling, cytotoxic granule release, and other important cellular events. This system shows great promise as a flexible, cost-effective immunotherapy with the potential to treat a wide variety of cancers.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>McMaster</h2> <p> <b> Region: </b>North America - Canada<br><b>Section: </b>Undergraduate<br> <b>Track: </b>New Application<br><b>Poster: </b>Zone 1 - #34 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room310 - 3:15 PM - 3:45 PM</p> <p><a href='https://2018.igem.org/Team:McMaster'>Investigating Mechanisms of Amyloid-beta Aggregation in Alzheimer's Disease</a></p> <p>Our proposed project seeks to investigate amyloid-beta aggregopathy in Alzheimer's disease (AD) through an E.coli model system. We will generate a mutant library of the Amyloid Beta 1-42 (Aβ1-42) gene, to be recombinantly expressed in E.coli as part of a drop-out screen. Given that Aβ1-42 spontaneously aggregates into toxic plaques, we expect the dropout cultures to become enriched over time for Aβ1-42 gene variants correlated with a reduced capacity for aggregation. We will use next generation sequencing data from our initial and resulting mutant sequences to develop a model to identify key regions of the Aβ1-42 sequence crucial to plaque formation. This can contribute to future research by revealing plaque-forming Aβ mutations.<p></div>
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<div class='column half_size'> <h2>McMasterA</h2> <p> <b> Region: </b>North America - Canada<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 5 - #269 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room310 - 4:15 PM - 4:45 PM</p> <p><a href='https://2018.igem.org/Team:McMasterA'>No title</a></p> <p>No abstract<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Melbourne</h2> <p> <b> Region: </b>Asia - Australia<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 5 - #304 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room311 - 2:45 PM - 3:15 PM</p> <p><a href='https://2018.igem.org/Team:Melbourne'>Glutamate Biosensor</a></p> <p>Our proposed project is to create a glutamate biosensor. The proposed biosensor can be used to detect and give a fluorescent readout on the glutamate concentration level. The biosensor will be a circuit in Escherichia coli where fluorescent readout, via FRET, will correlate with the glutamate concentration. The signal will be detected using a calcium based fluorescent system. Our system uses a calcium channel that has a glutamate binding site which opens upon binding in our bacteria. Once the channel opens, the influx of calcium and the binding of calcium to our calmodulin-based fluorescent sensor. The calmodulin undergoes a conformational change into its active form, and will form a protein-protein interaction with M13 peptide, the calmodulin-binding domain of skeletal muscle myosin light chain kinase. On the ends of both protein will have an EGFP protein that will be in vicinity of each other to give a FRET signal.<p></div>
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<div class='column half_size'> <h2>METU HS Ankara</h2> <p> <b> Region: </b>Europe - Turkey<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 2 - #132 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room312 - 4:15 PM - 4:45 PM</p> <p><a href='https://2018.igem.org/Team:METU HS Ankara'>The Combination of FucO and GSH Stimulates Bioethanol Production from Lignocellulosic Biomass</a></p> <p>As energy resources get scarce, bioethanol production from lignocellulosic waste looks like a great alternative in terms of high energy yield and eco-friendliness. Due to their highly complex and rigid structure, lignocellulosic wastes need to be pretreated before they can be fermented. The process causes toxic byproducts such as furfural and 5-Hydroxymethylfurfural that inhibit the ethanol production and growth rate of bacteria, E. coli ethanologenic strain KO11. By integrating GSH and FucO genes into KO11 bacteria, we aim to enhance bioethanol production. Since furfural and HMF act as thiol-reactive electrophiles, cellular glutathione levels get depleted in their presence, leading to the accumulation of reactive oxygen species. Thus, overexpression of GSH increases cellular growth rates and lifespan. On the other hand, the expression of fucO results in the formation of NADH dependent furfural oxidoreductase which degrades furfural into furfuryl alcohol resulting in a higher rate of growth and ethanol fermentation.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Michigan</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 1 - #11 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room208 - 9:30 AM - 10:00 AM</p> <p><a href='https://2018.igem.org/Team:Michigan'>CRISPR Testing Model: Competitive Binding</a></p> <p>The Cas9 enzyme has seen a rapid expansion of applications in the field of gene therapy. However, CRISPR's high frequency of off site targets can lead to undesired mutations, making it imperative that accuracy and efficiency be improved to be successful. Since modifications to minimize off-site targets are under development, it is important that there is a standardized model available on which these modifications and their binding patterns can be tested and compared. We designed a testing platform for comparing engineered Cas9 variants to the natural form through direct competition. Our model relies on competition between two Cas9s from Streptococcus pyogenes and Staphylococcus aureus as a proof of concept in an assay termed 'Guardian/Assassin'. This system can be used to expedite the design process of Cas9 systems and expand the Cas9 toolbox by allowing faster identification of efficiency within IGEM and throughout the scientific community.<p></div>
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<div class='column half_size'> <h2>MichiganState</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Food & Nutrition<br><b>Poster: </b>Zone 1 - #60 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room207 - 9:30 AM - 10:00 AM</p> <p><a href='https://2018.igem.org/Team:MichiganState'>No title</a></p> <p>No abstract<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Mingdao</h2> <p> <b> Region: </b>Asia - Taiwan<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 5 - #296 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room207 - 5:15 PM - 5:45 PM</p> <p><a href='https://2018.igem.org/Team:Mingdao'>Blood Pathogen Test for a Mosquito Bite</a></p> <p>Bloodborne and mosquito-borne diseases are common among humans. They are caused by pathogens in the blood such as Escherichia coli, Staphylococcus aureus, dengue viruses, HIV, etc. To detect these pathogens in the human bodies is difficult in areas with lacking resources such as healthcare workers and lab equipment. What's more, patients infected with diseases like HIV may not be willing to let others to know. Therefore, a simple and self diagnostic device would greatly appeal to them. Team Mingdao is working on engineered mosquitoes to become a biosensor and blood drawer. We successfully demonstrated the experiment in the mosquito cells with the synthetic Toll signaling through antimicrobial peptide (AMP) reporter system to response the pathogens. Finally, to make this project to be usable in real life, we designed a portable mosquito cage as the size of a matchbox for use at home even without any professional instruction.<p></div>
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<div class='column half_size'> <h2>Minnesota</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 4 - #232 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room309 - 4:15 PM - 4:45 PM</p> <p><a href='https://2018.igem.org/Team:Minnesota'>Self-Sustaining Engineered Bacteria for Mercury Bioremediation with Auxotrophic Based Biocontainment System</a></p> <p>We have engineered mercury(II) ion auxotrophy, which is sensitive to the mercury(II) ion concentration. Cell proliferation will remain normal with the presence of mercury(II) and the auxotrophic attribute by mercury(II) concentration, at which become nonviable. This is achieved by inserting an plasmid vector into an existing auxotroph E. coli (strain JW3841-1), which has its GlnA gene (Glutamine synthetase) knocked out, leads to its inability to synthesize glutamine and constrains the E. coli's proliferation. MerR is a mercury(II)-dependent transcriptional repressor-activator based on mercury(II) concentration. When mercury(II) is present, it activates the transcription of the mercury resistance protein complex and represses when absent. GlnA, MerR and MerA gene will be implanted into strain JW3841-1. MerR is activated by environmental mercury(II), glutamine synthetase will be produced for cell utilization. When the environmental mercury(II) is fully converted into mercury(0) by MerA (Reductase), the translation of glutamine synthetase will stop, which lead to bacterial death.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Missouri Rolla</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 5 - #270 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room312 - 10:00 AM - 10:30 AM</p> <p><a href='https://2018.igem.org/Team:Missouri Rolla'>BTree</a></p> <p>Since the year 2002, North American ash trees have been infected with and killed by an invasive beetle species known as Emerald Ash Borers (EAB). Current methods for prevention and treatment of EAB's are too expensive and time consuming for large scale eradication. Our proposed long term solution is to develop Ash trees that are genetically resistant to EAB's. From a known Bacillus thuringiensis Cry8Da protein, we hope to induce mutations in the protein's receptor binding regions to create a Bt toxin specific for EAB's. After screening modified proteins, we will utilize leaf-specific expression of the Cry Toxin in Arabidopsis thaliana as our model system for Ash trees. This method will target EAB's as they feed on ash leaves during adulthood. We hope to present this system for future development as a safe and effective alternative to current treatment methods used in affected areas.<p></div>
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<div class='column half_size'> <h2>MIT</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 5 - #319 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room302 - 10:00 AM - 10:30 AM</p> <p><a href='https://2018.igem.org/Team:MIT'>Porting the ComCDE System of Streptococcus mutans into HEK Cells as a Potential Caries Treatment</a></p> <p>Cariogenesis is facilitated by the growth of dense, adherent biofilm on the surface of teeth. This process is largely initiated by Streptococcus mutans through quorum sensing, a process by which S. mutans release Competence Stimulating Peptide (CSP) to activate a two-component signaling system (ComCDE) in neighboring cells, leading to critical bacterial mass formation on the tooth surface. Here, we engineer mammalian cells to sense CSP and biofilm formation by incorporating the ComCDE system into Human Embryonic Kidney (HEK) cells. In turn, our engineered HEK cells process the signal and actuate a response by secretion of kappa casein, a protein with known anti-biofilm activity. We envision these cells being administered through either an oral device worn overnight or as a cell therapy injected into patients' gums by dental professionals. Ultimately, our system will allow cells in the oral cavity to automatically detect and combat cariogenesis, preventing the onset of dental caries.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Montpellier</h2> <p> <b> Region: </b>Europe - France<br><b>Section: </b>Overgraduate<br> <b>Track: </b>New Application<br><b>Poster: </b>Zone 1 - #61 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room208 - 5:15 PM - 5:45 PM</p> <p><a href='https://2018.igem.org/Team:Montpellier'>Vagineering : A New Non Hormonal Contraception</a></p> <p>Modern hormonal contraceptive methods have been revolutionary for women in developed countries; however, they still exhibit a variety of challenges. Developing countries lack consistent access, hormonal contraceptives can produce harmful environmental effects, and some women are unable use them due to health problems. The Vagineering project looks to solve these issues with a novel, non-hormonal method. Our team aims to engineer Lactobacillus jensenii, a bacterium from the vaginal flora, to produce two proteins to prevent unintentional pregnancy: antisperm antibodies that inhibit sperm motility and anti-microbial peptides (AMPs) that produce spermicidal effects. The goal is to create a lasting contraceptive using only bacteria, which can later be reversed by engineering the strain with a kill-switch. Additionally, our studies of this strain have produced a toolbox that will help other teams to further engineer this less-characterized bacterium.<p></div>
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<div class='column half_size'> <h2>Munich</h2> <p> <b> Region: </b>Europe - Germany<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Manufacturing<br><b>Poster: </b>Zone 5 - #265 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room311 - 4:45 PM - 5:15 PM</p> <p><a href='https://2018.igem.org/Team:Munich'>Phactory</a></p> <p>Antimicrobial resistance is a major emerging threat as reported by the WHO. Worldwide implementation of bacteriophage therapy, a 100-year old treatment employing the natural enemies of bacteria, is impeded by the lack of common manufacturing procedures which meet international quality and safety standards. Based on synthetic biology we created Phactory, a cell-free molecular assembly line for bacteriophages. We demonstrate expression of several phages including T7, MS2 and 3S at clinically relevant concentrations. Exploiting the open nature of cell-free systems, Phactory enables modular composition of bacteriophages with engineered proteins while remaining GMO-free. We developed a quality control structure utilizing state-of-the-art bioinformatics, as well as purification and encapsulation protocols. To expand our production variety while reducing cost, we optimized and engineered home-made E. Coli cell-extract. Compared to traditional manufacturing procedures, Phactory requires 2.5% of the production volume and demands no special biosafety regulations to yield bacteriophages ready for therapy.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Nanjing NFLS</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 1 - #9 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room306 - 9:00 AM - 9:30 AM</p> <p><a href='https://2018.igem.org/Team:Nanjing NFLS'>A telomerase and CRISPR-based gene therapy of cancer</a></p> <p>Telomerase is silent in most normal somatic cells while active in over 90% of cancers. Therefore, various telomerase activity inhibitors have been developed to treat cancers but all failed. In our project, we acted oppositely to develop a cancer gene therapy by utilizing the telomerase activity in cancer cells. We constructed a telomerase-activating gene expression system to induce cancer cell death. In this system, a vector ended with a telomerase-recognizable end can be elongated by telomerase, which will provide a telomeric repeat sequence that can be bound by a telomeric DNA-targeting dCas9-VP64-sgRNA. This binding will activate expression of an effector gene Cas9. The produced Cas9 protein can then be targeted to the telomeres of cancer cell chromosomes by a telomere-targeting sgRNA, which will produce the DNA damage and lead to cancer cell death. However, due to no telomerase activity, this system will not affect normal cells.<p></div>
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<div class='column half_size'> <h2>Nanjing-China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Energy<br><b>Poster: </b>Zone 2 - #126 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room302 - 2:45 PM - 3:15 PM</p> <p><a href='https://2018.igem.org/Team:Nanjing-China'>Light-Driven Biohybrid Nitrogen Fixation Approach in E. coli Cells</a></p> <p>Our team, Nanjing-China 2018, intends to establish a sound and ideal whole-cell photocatalytic nitrogen fixation system. We use the engineered E. coli cells to express nitrogenase and in-situ synthesize of CdS semiconductors in the biohybrid system. Instead of ATP-hydrolysis, such system is able to photocatalytic N2(nitrogen) to NH3(ammonia). The biohybrid system based on engineered E. coli cells with biosynthesis inorganic materials will likely become an alternative approach for the convenient utilization of solar energy.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>NAU-CHINA</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 4 - #215 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room306 - 2:15 PM - 2:45 PM</p> <p><a href='https://2018.igem.org/Team:NAU-CHINA'>MOSFET</a></p> <p>MOSFET (metal-oxide-semiconductor field-effect transistor) is an essential component in both analog and digital circuits such as analog switches and micro-processors. Inspired by this idea, we built genetic circuit 'MOSFETs' in animal T cells which is 'Monitoring and Operating System Founded on Engineered T cells'. The upstream of this genetic circuit uses synNotch to transduce extracellular signals into cells. The concentration of signals corresponds to different threshold values, and the system can respond accordingly under different concentrations. We achieved some level of logical effects by applying recombinase's reverse mechanism to ensure the uniqueness of downstream output. By using ODE and gillespie algorithms, we conducted validations on mathematical models. Using the concentration of cell surface antigen as gate signal, different recombinase and promoter to adjust threshold value, we conducted experiment validation to measure different promoters and recombinases' response to signals.<p></div>
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<div class='column half_size'> <h2>Navarra BG</h2> <p> <b> Region: </b>Europe - Spain<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 1 - #72 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room304 - 9:30 AM - 10:00 AM</p> <p><a href='https://2018.igem.org/Team:Navarra BG'>BioGalaxy: a project to produce plant biofactories for an extra-terrestrial future</a></p> <p>In this project we propose to develop a simple and cost-effective plant-based method for production and purification of recombinant proteins. The system is based on the production of plants transiently expressing a target protein (TP) fused to granule-bound starch synthase (GBSS). Tissues of GBSS:TP expressing plants will be milled in an aqueous buffer and the starch granules will be purified from plant tissue-derived impurities through a series of simple centrifugation and wash/elution steps allowing the starch granules to precipitate in a highly purified form. The GBSS:TP will be engineered to contain a unique cleavage site recognized by a specific protease, enabling the TP to be separated from the GBSS into the aqueous buffer, while the GBSS remains embedded the starch granule. Once treated with the protease, the starch granules will be removed by centrifugation while the highly purified cleaved TP can be further purified using conventional downstream processing.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>NAWI Graz</h2> <p> <b> Region: </b>Europe - Austria<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 5 - #293 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room310 - 4:45 PM - 5:15 PM</p> <p><a href='https://2018.igem.org/Team:NAWI Graz'>E. coLipid - The good kind of fat!</a></p> <p>In the last decades, the palm oil industry increased on an extreme level and, because of great demand, it still does. The main products from the palm plant, palm oil and palm kernel oil, are not dispensable in today´s society. Because of their characteristic properties, they are widely used in food-, material-, beauty- and fuel industry. Palm kernel oil mainly consists out of saturated fatty acids, with Lauric acid (C12) as main component. This unique lipid pattern mainly differs from the palm oil itself. The aim of our project: We are working on a way to produce palm kernel oil using microorganisms, especially E.coli.The production of fatty acids and their esterification to triglycerides as energy storage is a natural process in all organisms. We make use of this natural way of synthesis by modifying the expression of fatty acids with appropriate carbohydrate chain length on a molecular level.<p></div>
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<div class='column half_size'> <h2>NCHU Taichung</h2> <p> <b> Region: </b>Asia - Taiwan<br><b>Section: </b>Undergraduate<br> <b>Track: </b>New Application<br><b>Poster: </b>Zone 1 - #59 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room207 - 9:00 AM - 9:30 AM</p> <p><a href='https://2018.igem.org/Team:NCHU Taichung'>Engineered Endophyte-Assisted Phytoremediation</a></p> <p>Endophyte can live inside the plants and work together with them without causing harm to the host plant. With the large and deep root system of plants, the endophyte can have further impact in soil. A serious case of soil contamination is dioxin pollution after the Vietnam War. Dioxin is a group of toxic compounds that accumulate in the environment and are difficult to break down naturally. Tackle with large area soil dioxin contamination is hard, since the most efficient way to clean up is burning, which is eco-unfriendly and costly. Our project combines phytoremediation and engineered endophyte to clean dioxin-contaminated soil. We engineered an endophyte with membrane transporter, dehalogenase and laccase to intake and break down dioxin, and created biobricks compatible shuttle vector that can express in a well-researched endophyte, Burkholderia phytofirmans. This platform can potentially apply to projects that related to or benefit from plant-microbe interaction.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>NCKU Tainan</h2> <p> <b> Region: </b>Asia - Taiwan<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 1 - #85 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room312 - 2:45 PM - 3:15 PM</p> <p><a href='https://2018.igem.org/Team:NCKU Tainan'>One step closer towards a low carbon society</a></p> <p>Ever since the 90s when concern over the impact of carbon emission on our environment was first raised, global-wide efforts in reducing emission have been met with mixed results. Just 2017 alone the global emission level grew by 1.4%. This year, the 2018 iGEM NCKU Tainan team will design a device capable of piping CO2 and convert it into biomass via integrating a non-native Calvin-Benson-Bassham cycle into E. coli using the RuBisCO and PRK genes from Synechococcus sp, which encode for major enzymes involved in carbon fixation. Industrial gases will enter a pipe (inlet) at the bottom of a bioreactor, flow through a ceramic nozzle and mix with E. coli-containing mixture which also consumes CO2. 'Of CO2urse' is an alternative to utilize excess CO2. Our ultimate goal is to convert CO2 into useful bioproducts. It would be one step closer towards a low carbon society.<p></div>
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<div class='column half_size'> <h2>NCTU Formosa</h2> <p> <b> Region: </b>Asia - Taiwan<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 1 - #18 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room310 - 10:00 AM - 10:30 AM</p> <p><a href='https://2018.igem.org/Team:NCTU Formosa'>Plan(t) B</a></p> <p>Soil bacteria distribution is skewed by chemical fertilizers. These elements temporarily increase nutrients; however, they promote excessive growth of certain bacteria, such as phosphate solubilizing bacteria, damaging soil integrity. We developed a regulation system to manipulate soil microbiota, using bacteriocins as bio-stimulants to maintain nutrient levels while balancing bacterial ratios. First, we determine ideal levels of nitrogen, phosphorus and potassium for plant growth. After determining a volume of fertilizer, we use a nutrient-to-microbiota model that relates element levels to bacteria amounts to determine the distribution of bacteria after fertilization. We use our bacteriocin-effect-model to predict an ideal bacteriocin volume. A correlation model relates inhibition to changes in bacterial ratios. This system predicts the bacteriocin volume needed to prevent bacteria that thrive off chemical fertilizers from becoming too dominant. Our innovative system of regulating microbiotas using bio-stimulants is a long-term solution, balancing high productivity with environmental sustainability.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>NDC-HighRiverAB</h2> <p> <b> Region: </b>North America - Canada<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 2 - #103 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room311 - 11:30 AM - 12:00 PM</p> <p><a href='https://2018.igem.org/Team:NDC-HighRiverAB'>Escherichia coli transformed with EstA gene breaks ester bonds between fatty acids and 4-nitrophenol</a></p> <p>Through the use of an esterase gene, the engineered bacteria was constructed with the purpose of reducing the accumulation of solidified fat that holds non-biodegradable material together in sewer systems. With the use of DH5…ë Escherichia coli as the chassis, a plasmid was introduced containing a pLac promoter, and EstA gene. The EstA gene that is found in the Pseudomonas aeruginosa, was inserted in the plasmid with the intention of breaking apart ester bonds which connect the glycerol backbone to the fatty acid. To test the enzyme's effectiveness, 4-nitrophenol joined to a short chain fatty acid by an ester bond was introduced to the bacteria sample. Once this ester bond is severed, the 4-nitrophenol compound turns green. Preliminary results have shown that the bacteria expressing EstA is capable of breaking the ester bonds within 4-nitrophenol constructs. In the future, our team hopes to achieve the same result with triglycerides.<p></div>
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<div class='column half_size'> <h2>NEFU China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Information Processing<br><b>Poster: </b>Zone 1 - #15 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room304 - 9:30 AM - 10:00 AM</p> <p><a href='https://2018.igem.org/Team:NEFU China'>Secured Message Transmission by Yeast: A multiple-level encrypted biosystem for information storage</a></p> <p>In the modern world, most people recognize computers as device to store information, but deoxyribonucleic acid, or DNA can do better. However, living organisms can also provide a superior camouflage for secret messages. The aim of our project is to develop a yeast-based encrypted system to transmit information between two parties. We convert messages into DNA sequences using a designated program or code book and integrate them into yeast genome. To comprehend the message, the receiver needs to successfully pass through multiple levels of encryption, including cracking a promoter lock by a specific small RNA, reuniting dispersed DNA segments separated by introns, retrieving message nucleotides by a specific primer set and decoding DNA sequence into readable sentences by a unique program. Additionally, a build-in suicide system will prevent the engineered yeast from being extensively propagated.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>NEU China A</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 1 - #53 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room208 - 2:15 PM - 2:45 PM</p> <p><a href='https://2018.igem.org/Team:NEU China A'>Engineered bacteria alleviate the inflammatory bowel disease and prevent colorectal cancer</a></p> <p>Nowadays, due to the popularity of fast food and unhealthy life style, the number of patients with inflammatory bowel disease (IBD) is rising in Asia. In addition, patients with IBD have an increased risk of developing colorectal cancer (CRC). Therefore, NEU_China_A aims to design a biological system against IBD and potential CRC this year. To relieve the intestinal inflammation, we empowered our bacteria with an anti-inflammatory device, which includes a sensor to detect the inflammatory signal, a highly efficient enhancer and an effector to secrete interleukin ten (IL-10). Furthermore, we engineered our bacteria with myrosinase to turn the glucosinolates, a natural component of cruciferous vegetables, to sulphoraphane. It's an organic molecule with well-known anti-cancer activity. Integrating cruciferous vegetable diet with synthetic biology, we envision that the engineered bacteria will greatly help us to overcome the severe situation in the IBD patient's gut.<p></div>
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<div class='column half_size'> <h2>NEU China B</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Food & Nutrition<br><b>Poster: </b>Zone 1 - #12 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room310 - 11:30 AM - 12:00 PM</p> <p><a href='https://2018.igem.org/Team:NEU China B'>Engineered E.coli L-Lactate Biosensor in food fermentation</a></p> <p>The role of L-lactate is not always beneficial for the yogurt fermentation due to excessive L-lactate can provide an optimized growth condition for yeast and mold. Therefore, it is important to detect the concentration of L-lactate. Acid-base titration is a common method for it, but this method is complicated and time-consuming. In order to monitor L-lactate quickly and conveniently, we designed a biosensor for detecting L-lactate concentration by using the lldPRD L-lactate operon and QS system in E. coli. One of these parts is able to induce the lldPRD genes expression, LuxS protein, in the presence of L-lactate. LuxS protein catalyzes the SAM cycle and produces a small signaling molecule AI-2 that motivates our second part promoter of LsrA&K to promote GFP expression. The optic fiber is able to detect the GFP signal and convert it into current. Simultaneously, the entire device container will be made by 3D printing.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>New York City</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 1 - #5 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room304 - 9:00 AM - 9:30 AM</p> <p><a href='https://2018.igem.org/Team:New York City'>Testing the efficacy of mRNA displacement technique in huntingtin cell lines to treat Huntington's Disease</a></p> <p>Huntington's Disease (HD) is an autosomal dominant disorder that leads to the progressive degeneration of neurons in the brain, which currently has no cure. HD is typically adult-onset and is characterized by a variety of symptoms including memory loss, involuntary movements, poor coordination, and impaired decision-making. Mutation in the huntingtin (HTT) gene causes HD, specifically a trinucleotide repeat of CAG that is abnormally repeated over 40 times. The goal of our project was to test the effectiveness of the plasmid that we generated last year, which targets and blocks endogenous faulty mRNA and releases a corrected RNA strand for proper protein synthesis of the HTT gene. The efficacy of this plasmid was tested on huntingtin cell lines, specifically the HeLa/polyQ-mCFP cell line. The effectiveness of this treatment was tested by evaluating whether the quantity of mutated HTT protein decreases after transfecting cells with the engineered plasmid.<p></div>
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<div class='column half_size'> <h2>Newcastle</h2> <p> <b> Region: </b>Europe - United Kingdom<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 2 - #135 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room309 - 12:00 PM - 12:30 PM</p> <p><a href='https://2018.igem.org/Team:Newcastle'>Alternative Roots: Engineering Microbial Communities</a></p> <p>The demand for food, fuel and materials is placing unprecedented pressure on agricultural production. To secure higher productivity, the sector relies upon synthetic fertilisers derived from energy intensive manufacturing methods. Here, we propose an alternative approach to support plant productivity. The Alternative Roots project investigated Pseudomonas fluorescens as a chassis organism. Development of a plant-colonising chassis provides novel mechanisms for soil microbiome manipulation without genetically modified crops. As proof of concept, we focus on improving nitrogen supply via naringenin biosynthesis - a potential chemoattractant of free-living, nitrogen-fixing bacteria. Legal and social considerations of the project drove the development of NH-1, a low-cost, small-scale and programmable hydroponic system. Tailored to overcome experimental limitations faced by many plant scientists, NH-1 provides improved reproducibility, coupled with high-throughput experimentation. This system enabled exploration of future deployment techniques within contained environments that may result in enhanced, sustainable crop productivity at a local and accessible level.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>NJU-China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 2 - #94 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room310 - 4:15 PM - 4:45 PM</p> <p><a href='https://2018.igem.org/Team:NJU-China'>Surf in the neuron: A new strategy to target the dendrites</a></p> <p>With cell-type specific targeting exosomes expressing a special peptide on the exosomal membrane, we could deliver biological molecules to the neuronal cells. By this method, the localization of molecular cargos in the recipient cells is random and even. However, some molecules are localized at sub-cellular compartment naturally, like in neurons, several mRNAs are transported to the dendrites or axons. How to specifically deliver an exogenous mRNA to the neurites remains to be solved. We tested two cis-acting RNA elements (the 5’-UTRs of Tick-borne encephalitis virus (TBEV) and the 3’-UTR of mouse β-Actin gene) to guide the mRNA. It turns out the shorter one, 5’-UTR of TBEV works better, and the 5’-UTR could be successfully applied to the AAV vector, carrying the mRNA into the neurites. Through our element, we could improve the targeting method to the sub-cellular level and provide new insights into future treatment of certain neuronal diseases.<p></div>
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<div class='column half_size'> <h2>NKU CHINA</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>New Application<br><b>Poster: </b>Zone 3 - #184 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room310 - 11:00 AM - 11:30 AM</p> <p><a href='https://2018.igem.org/Team:NKU CHINA'>Population Quality Control system: a circuit for yield enhancement based on non-genetic variations</a></p> <p>Biosynthesis enables renewable and environment-friendly production of various compounds. However, present biosynthetic performances still await improvements to be cost competitive with petroleum-based chemical synthesis and suitable for large-scale industrial production. In order to achieve this goal, many approaches have been created, among which the Population Quality Control ( PopQC ) system is proved efficient. In our project, a PopQC system was developed as a plasmid based gene circuit in Bacillus amyloliquefaciens LL3 to continuously select high-performing cells in order to improve the yield of target metabolite, glutamate. In the presence of our PopQC system, high-producers stayed alive while low-producers were unable to survive. Consequently, the average intracellular concentration as well as the yield of glutamate among the population was enhanced, which finally led to the yield enhancement of poly-γ-glutamate, a high-value-added secondary metabolite.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>NorthernBC-Canada</h2> <p> <b> Region: </b>North America - Canada<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 5 - #291 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room302 - 9:30 AM - 10:00 AM</p> <p><a href='https://2018.igem.org/Team:NorthernBC-Canada'>No title</a></p> <p>No abstract<p></div>
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<div class='column half_size'> <h2>Northwestern</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 3 - #186 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room207 - 11:00 AM - 11:30 AM</p> <p><a href='https://2018.igem.org/Team:Northwestern'>MetaSense: A heavy metal biosensor optimized for cell-free expression</a></p> <p>Water pollution has become a rising problem in Lake Michigan as more contaminants are accidentally or illegally dumped. However, very little is being done to raise citizen awareness or to combat the negative effects on the ecosystem. Thus, the goal of this project is to create a paper-based cell-free assay that detects whether chromium or lead is present in a given water supply. Cell free systems are ideal for heavy metal detection because they are field-deplorable, eliminate issues of biocontamination, and facilitate increased reaction control via the open reaction environment. For each metal, there are two plasmids; one that produces a repressor protein while the other constitutively produces GFP. With this combination, the repressor interferes with the production of GFP until the specified heavy metal is present, resulting in a fluorescent output. The benefit of creating an easy-to-use sensor is that it empowers everyday citizens to test their water quality.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Nottingham</h2> <p> <b> Region: </b>Europe - United Kingdom<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 4 - #222 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room306 - 10:00 AM - 10:30 AM</p> <p><a href='https://2018.igem.org/Team:Nottingham'>Clostridium dTox</a></p> <p>Clostridium difficile infections are the primary cause of healthcare associated diarrhea, with hypervirulent outbreaks becoming increasingly common across the globe. It is predicted that $6.3 billion is spent annually on treating C. difficile in the U.S alone. Patients who have undergone treatment with broad spectrum antibiotics are at a high risk of being infected by this opportunistic pathogen, because their native gut flora is more likely to exist in a dysbiotic state. Our project aims to engineer a lysogenic bacteriophage with genetic constructs that will suppress the toxin production in C. difficile. We will use two different strategies to achieve this: an antisense RNA system capable of inhibiting translation of toxin transcripts, and a dead Cas9 mechanism to impede transcription of the toxin genes. Ultimately, we intend to produce a novel phage therapy capable of reducing toxigenicity of resident C. difficile without affecting native gastrointestinal microbiota.<p></div>
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<div class='column half_size'> <h2>NPU-China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 2 - #150 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room311 - 10:00 AM - 10:30 AM</p> <p><a href='https://2018.igem.org/Team:NPU-China'>Design and Synthesis of the Minimal Saccharomyces cerevisiae Mitochondrial Genome</a></p> <p>Mitochondria harbor relatively independent genome, the uniqueness of which enables S.cerevisiae to be widely used in the study of mitochondrial loss and relevant diseases. The mitochondrial genome size varies prodigiously between different yeasts, positively correlated with the size of intergenic regions and introns. This year, we boldly try to design and synthesize a minimal S. cerevisiae mitochondrial genome from scratch (39k). We employed bioinformatics algorithms to analyze the function and conservation of various parts of the original mitochondrial genome, providing a criterion for determining the non-essential sequences that could be deleted. The complexity of the mitochondrial genome sequence, low GC content and the existence of local GC clusters make it difficult to synthesize the genome, which was solved by specialised separation, parameter optimization, etc. This genome will be transferred into S. cerevisiae cells that have lost mitochondria genome, verify their function, feed back the result and optimize our original design.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>NTHU Formosa</h2> <p> <b> Region: </b>Asia - Taiwan<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Diagnostics<br><b>Poster: </b>Zone 1 - #32 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room309 - 11:00 AM - 11:30 AM</p> <p><a href='https://2018.igem.org/Team:NTHU Formosa'>BioWatcher_Autonomous cell reporter system for non-invasive real-time blood diagnosis</a></p> <p>Countless biomarkers exist in our blood flow, which could be applied to diagnose health condition or even potential diseases. Ensuring the accuracy, common ways for soluble biomarkers detection are mostly invasive and not real-time. Hence, we proposed Biowatcher, engineered reporter cells that enable detection and autonomous report of soluble biomarkers in the bloodstream. The sensing parts of the reporter cells are powered by nanobodies, the single-domain antibody that can be engineered to detect different biomarkers. Binding of biomarkers on nanobodies triggers cleavages and releases of transcriptional activators. Activating the expression of lux gene, in turn, induces bioluminescent emission as a readout for devices to detect. This kind of autonomous reporting system can have great varieties of applications by installation on wearable devices, watch for example. With the required software, the wearable devices could noninvasively track the level of biomarkers for real-time diagnosis.<p></div>
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<div class='column half_size'> <h2>NTHU Taiwan</h2> <p> <b> Region: </b>Asia - Taiwan<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Open<br><b>Poster: </b>Zone 1 - #13 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room207 - 2:15 PM - 2:45 PM</p> <p><a href='https://2018.igem.org/Team:NTHU Taiwan'>Equivibrium</a></p> <p>The Vibrio-related infection of the aquatic animal leads to inestimable financial damage for aquaculture in Taiwan. Our goal is to design a regulatory system to replace the usage of antibiotics. Our engineered E. coli will detect AHL secreted by Vibrio and will trigger E. coli a to produce a peptide which can kill Vibrio. The killing genes are regulated by the STAR system, and we would like to let the system satisfy the succession model. Moreover, to verify our experiment, we design a bioreactor which is low-cost and is a real-time O.D. measuring device. It can track two engineered germs at the same time. Last but not least, because the current Vibrio detection methods are time-consuming, we aim to create a high-specificity Vibrio detecting device which collects the water sample automatically and periodically. And it would warn fisherman timely if the concentration beyond the standard value.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>NTNU Trondheim</h2> <p> <b> Region: </b>Europe - Norway<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 1 - #17 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room207 - 5:15 PM - 5:45 PM</p> <p><a href='https://2018.igem.org/Team:NTNU Trondheim'>Quorum Sensing as a target mechanism for reducing biofilm formation</a></p> <p>Bacterial biofilm formation is a profound challenge in treating wounds, inserting prostheses in patients or on equipment in different production industries. Communication between bacteria and coordination of biofilm formation is mediated by the quorum sensing mechanism. Here we utilize a CRISPR interference (CRISPRi) system to inhibit Escherichia coli’s quorum sensing mechanism by knocking down the luxS gene. The luxS gene encodes the synthase “S-ribosylhomocysteine lysae”, which is responsible for synthesis of the Autoinducer-2 (AI-2) quorum sensing molecule. We implemented the CRISPRi system in E. coli DH5α and TG1 and measured the biofilm production by Crystal Violet assays. We were able to significantly reduce TG1’s biofilm formation, while DH5α showed results with high variability. Experimental approaches for reducing biofilm formation have the potential to illuminate unknown underlying processes in biofilm formation and possibly reveal treatments for the challenges that biofilms account for.<p></div>
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<div class='column half_size'> <h2>NTU-Singapore</h2> <p> <b> Region: </b>Asia - Singapore<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 1 - #6 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room306 - 3:15 PM - 3:45 PM</p> <p><a href='https://2018.igem.org/Team:NTU-Singapore'>ModVision - A programmable nucleic acid modification and detection toolkit based on CRISPR/Cas systems</a></p> <p>Recently, different CRISPR/Cas systems have been engineered to perform base editing on both DNA and RNA. However, some critical shortcomings are hampering their applications. For example, these base editors are often too large to fit into common delivery vehicles. Additionally, no approach is available to enable fast screening of specific RNA modifications. To tackle the size issue, we developed novel compact Cas9 protein scaffolds that, when fused to deaminase domains, will be both small enough to fit into delivery vehicles and only exhibit sufficient editing activity for downstream therapeutic applications. With our human practice, similar efforts were made on analogous RNA modifications using the Cas13 protein family. To tackle the second issue, we aimed to directly detect nucleotide modifications in the transcriptome using nanopore sequencing. We synthesised and sequenced unmodified and modified RNAs with the nanopore sequencer to develop different machine learning models that reliably identify positions of base modifications.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>NU Kazakhstan</h2> <p> <b> Region: </b>Asia - Kazahkstan<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 2 - #140 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room302 - 9:30 AM - 10:00 AM</p> <p><a href='https://2018.igem.org/Team:NU Kazakhstan'>From a Dangerous Waste to Functional Nanomaterials: Bioremediation of Sour Crude Oil Waste using Cyanobacteria</a></p> <p>Accumulation of a hydrogen sulfide as a consequence of sulfur-containing 'sour' oil refinement can be dangerous. H2S damages the drilling equipment and causes corrosion of transporting pipelines. We use Cyanobacteria as a chassis since the organism is autotrophic. We designed a Synechococcus elongatus PCC 7942 that expresses Sulfide Quinone Reductase (SQR) that catalyzes sulfide-dependent plastoquinone reduction in anaerobic conditions, while photosystem II stays inhibited due to sulfide being present. SQR converts Sulfide to elemental Sulfur which is stored in the bacteria and accumulates in the Biomass. The electron flow in this modified Photosynthetic Electron Transport Chain goes to a transgenic Hydrogenase making use of the existing anoxygenic conditions due to sulfide presence. The Biomass is finally converted to functional materials used for Proton Exchange Membrane (PEM) fuel cells in accordance with a newly developed method in our laboratory.<p></div>
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<div class='column half_size'> <h2>NUDT CHINA</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 2 - #114 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room311 - 10:00 AM - 10:30 AM</p> <p><a href='https://2018.igem.org/Team:NUDT CHINA'>PR PREDATOR-An improved protein degradation method based on ectopic expression of TRIM21 and recombinant antibody</a></p> <p>TRIM-AWAY, through introducing antibody and Trim21 protein into cells by microinjection or electroporation, represents a novel strategy which could rapidly remove unmodified native proteins in diverse cell types. However, the high complexity and low efficiency limited its application. Through combining TRIM-AWAY and ectopic expression of recombinant antibodies, we developed PR PREDATOR, a robust tool for degrading endogenous proteins in mammalian cells. Basically, parts for expression of Trim21 and recombinant antibodies were constructed and inserted in one single vector to realize the P2A-mediated bicistronic expression. GFP and ErbB-3, a member of the receptor tyrosine-protein kinases highly involved in the proliferation and metastasis of cancer cells, were chosen as targets of PR PREDATOR for the proof of concept and further demonstration of our design respectively. Our PR PREDATOR method shall provide not only novel tools for protein function study but also brand-new options for treating disease caused by aberrant protein aggregations.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>NUS Singapore-A</h2> <p> <b> Region: </b>Asia - Singapore<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Manufacturing<br><b>Poster: </b>Zone 2 - #119 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room208 - 11:30 AM - 12:00 PM</p> <p><a href='https://2018.igem.org/Team:NUS Singapore-A'>Eco-friendly Bio-manufacturing of Flavonoid Dyes in Escherichia coli via Computer-mediated Optogenetic Regulation</a></p> <p>Natural dyes are increasingly considered as an eco-friendly solution to the serious water pollution generated by the textile and dye industries. Traditional production of natural dyes from plants heavily exhausts land and labour. While bio-manufacturing is an attractive alternative, it remains costly and chemically-intensive. We aim to develop a new bio-manufacturing method of producing flavonoids in E. coli for use as natural dyes. To eliminate the use of expensive chemical inducers to switch from growth to production phase and allow dynamic gene regulation, we designed an optogenetic circuit using a blue light repressible promoter for flavonoid biosynthesis. As it is critical to monitor cellular metabolic burden for efficient production, we introduced a stress-sensing fluorescence reporter. To optimize operations, a computer-aided system was developed to regulate gene expression using light according to the feedback from the stress sensor. To demonstrate this approach, we produced Luteolin, a natural yellow dye.<p></div>
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<div class='column half_size'> <h2>NUS Singapore-Sci</h2> <p> <b> Region: </b>Asia - Singapore<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 4 - #255 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room312 - 11:00 AM - 11:30 AM</p> <p><a href='https://2018.igem.org/Team:NUS Singapore-Sci'>RESCUE - RNA Editing System for C-to-U Editing</a></p> <p>Since the discovery of the CRISPR-Cas9, researchers now have a tool for precise gene targeting in any living organism. However, there remain concerns about whether such DNA editing methods are ethical, specific and safe, especially if editing is carried out in somatic cells. Recent work has shown that another Cas family protein, Cas13, can target and degrade specific RNA transcripts, thus effectively silencing target gene expression. The targeting of RNA strands has many advantages over DNA, as any changes are not permanent and its effect is transient. Our project aims to extend the application of CRISPR-Cas13 guided RNA targeting system for editing specific RNA bases on RNA strand (RESCUE system). Cas13 is linked to the catalytic domain of APOBEC1, an enzyme that can carry out RNA base modification. Our RESCUE system can diversify the current repertoire of RNA editing methods available.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>NWU-China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 2 - #100 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room310 - 5:15 PM - 5:45 PM</p> <p><a href='https://2018.igem.org/Team:NWU-China'>No title</a></p> <p>No abstract<p></div>
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<div class='column half_size'> <h2>NYMU-Taipei</h2> <p> <b> Region: </b>Asia - Taiwan<br><b>Section: </b>Undergraduate<br> <b>Track: </b>New Application<br><b>Poster: </b>Zone 2 - #98 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room312 - 2:45 PM - 3:15 PM</p> <p><a href='https://2018.igem.org/Team:NYMU-Taipei'>Hair to Stay - a Drug Screening System for Androgenetic Alopecia (AGA)</a></p> <p>Hair is one of the first noticeable aspects of our beauty and it reflects our identity. This year, the NYMU iGEM team aims to introduce a quick and convenient drug-screening platform to determine the effectiveness of hair loss product without animal or human testing. The cause of AGA is believed to be highly related to dihydrotestosterone (DHT), a derivative of testosterone that can possibly trigger the production of DKK-1 protein. DKK-1 protein can possibly inhibit the growth of root sheath cells in hair follicles and eventually lead to hair loss. The system that our team designed demonstrates a convenient platform to measure the amount of secreted DKK-1 protein, which provides a novel method for the screening of AGA drugs.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>NYU Abu Dhabi</h2> <p> <b> Region: </b>Asia - United Arab Emirates<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Diagnostics<br><b>Poster: </b>Zone 5 - #308 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room304 - 5:15 PM - 5:45 PM</p> <p><a href='https://2018.igem.org/Team:NYU Abu Dhabi'>Pathogene: A portable, low-cost, microfluidic lab-on-a-chip based device for rapid detection of multiple foodborne pathogens</a></p> <p>Despite regulations in place to ensure the distribution of safe food, foodborne diseases (FBDs) remain a global concern. To address the worldwide challenge of FBDs, we have devised a customizable device for the simultaneous detection of multiple food-borne pathogens (FBPs). The device detects specific DNA sequences associated with four FBPs: Campylobacter, Listeria monocytogenes, Salmonella, and Vibrio cholerae using the isothermal amplification techniques: recombinase polymerase amplification (RPA) and loop-mediated isothermal amplification (LAMP). The use of isothermal techniques allows the device to be more portable and cost-effective compared to conventional PCR systems, while the use of microfluidics allows for multiplexing and rapid high-throughput screening. The parameters of the device such as the number of pathogens, and amplification and detection methods can be customized as required. This novel lab-on-a-chip based device is rapid, portable, affordable, sensitive, specific, and customizable, making it ideal for resource-limited settings and point-of-care testing.<p></div>
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<div class='column half_size'> <h2>OLS Canmore Canada</h2> <p> <b> Region: </b>North America - Canada<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 4 - #218 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room306 - 11:00 AM - 11:30 AM</p> <p><a href='https://2018.igem.org/Team:OLS Canmore Canada'>The PET Peeve Project: Bio-tagging PET Plastic for Efficient Sorting and Recycling</a></p> <p>The accumulation of plastic pollution has spurred a global crisis. Looking for a solution, the OLS SynBio team discovered that the issue is not the recycling of plastic, but instead the inefficient sorting of plastics. The project uses synthetic biology to create a novel fusion protein that can specifically bio-tag polyethylene terephthalate (PET) plastic, so it can be sorted and recycled correctly. The project involves two proteins, PET hydrolase (PETase) and a hydrophobin called BsIA, that are produced via a bacterial chassis called Bacillus subtilis. The PETase enzyme binds to PET and is fused to a red fluorescent protein called mCherry, visually indicating when the adhesion occurs. The hydrophobin is 'water-fearing' and will help to bind the PETase to PET plastic. So far, transformations of Bacillus subtilis using the construct have been successful, and real-world applications of the project look promising.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>OUC-China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 1 - #86 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room311 - 12:00 PM - 12:30 PM</p> <p><a href='https://2018.igem.org/Team:OUC-China'>miniToe Family- A Controllable Toolkit Based on Csy4</a></p> <p>This year, we design a toolkit focused on post-transcriptional regulation, which is composed of a RNA endoribonuclease (Csy4) and a RNA module named miniToe. Csy4 (Csy6f), a member of CRISPR family, recognizes a specific 22nt hairpin. The RNA module was constructed by inserting the 22nt Csy4 recognition site between a RBS and cis-repressive RNA element, which can be specifically cleaved upon Csy4 expression, so the RBS is usually masked. Cleaved at the specific recognition site, it can release the masked RBS, thus endowing the programming of gene expression in the translation level with higher feasibility. We want to use one system to achieve diverse expression of target gene. So we further design four Csy4 mutants and five miniToe mutants. The whole system including five Csy4s and six miniToes is called miniToe family. By combining each Csy4 and hairpin, we can achieve different expression level of the target proteins in a polycistron.<p></div>
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<div class='column half_size'> <h2>Oxford</h2> <p> <b> Region: </b>Europe - United Kingdom<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 5 - #312 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room302 - 12:00 PM - 12:30 PM</p> <p><a href='https://2018.igem.org/Team:Oxford'>miBiome: Treatment of IBD with Genetically Engineered Probiotics</a></p> <p>Inflammatory Bowel Disease (IBD) is characterised by chronic inflammation of the intestine. The condition is associated with an imbalance in immune cell populations, notably Th17 and Treg. Existing immunosuppressive therapies, when successful, often elicit systemic side effects and require frequent readministration. Our solution is to develop a probiotic strain that restores the Th17/Treg cell balance via secretion of IL-10 in response to nitric oxide in the intestinal lumen. Overshoot is prevented by an adenine riboswitch-sRNA construct which responds to extracellular adenosine, an indicator of the Treg cell population. Integration of separate stimuli in a dual feedback loop enables a more dynamic, robust response to the immune state of the body. Various features have been incorporated to maximise biological safety, including an inducible kill switch system. We believe our design offers a non-invasive, self-tuning therapeutic for IBD, with potential to replace conventional immunosuppressants in the treatment of gastrointestinal autoimmune disorders.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Paris Bettencourt</h2> <p> <b> Region: </b>Europe - France<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 1 - #19 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room306 - 5:15 PM - 5:45 PM</p> <p><a href='https://2018.igem.org/Team:Paris Bettencourt'>STAR CORES: Protein scaffolds for star-shaped antimicrobial peptides</a></p> <p>Antibiotic overuse in livestock industry is one of the major drivers to the antibiotic resistance evolution; motivating calls to reduce, replace, and re-think the antibiotic usage in animals. Antimicrobial peptides (AMPs) are a promising alternative to conventional antibiotics. Recently, a class of chemically-synthesized, star-shaped AMPs has been shown to exhibit broad-spectrum antimicrobial activity while maintaining biocompatibility with mammalian cells. In this project, we combinatorially fused a set of known AMPs to structurally diverse, self-assembling protein cores to produce star-shaped complexes. Over 200 fusions were designed and expressed in a cell-free system, then screened for activity, biocompatibility, and membrane selectivity. In addition, we selected 4 AMPs for rational mutagenesis (~12000 variants), and a subset of fusions for molecular dynamic modeling, to identify features of surface charge and star geometry that impact AMP performance. Overall, we aim to create a novel class of selective, non-toxic AMPs which are biologically-produced.<p></div>
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<div class='column half_size'> <h2>Pasteur Paris</h2> <p> <b> Region: </b>Europe - France<br><b>Section: </b>Overgraduate<br> <b>Track: </b>New Application<br><b>Poster: </b>Zone 2 - #167 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room311 - 2:15 PM - 2:45 PM</p> <p><a href='https://2018.igem.org/Team:Pasteur Paris'>NeuronArch: the novel connecting and protecting biofilm based system for prostheses</a></p> <p>In the future, a long due consideration and an easier access to healthcare will be given to people with disabilities. Presently, some prostheses allow amputees to perform simple actions but without a direct connection between the nerves and the prosthesis. Furthermore, a major health risk is the development of pathogenic communities of microorganisms in structures called biofilms. Strong treatments with antibiotics, or even surgical reinterventions are then required. They represent a heavy burden for both the patient and the healthcare system. We imagined NeuronArch as a novel application that subverts potential pathogenic biofilms using an engineered one. This interface produces substances called neurotrophins (NGF), for directed and controlled growth of nerves. Using a conductive membrane, it will also allow passing of information and enhancement of the electrical properties. Altogether, these improvements would enable patients to regain natural perceptions and prevent the formation of Staphylococcus aureus biofilms by blocking quorum sensing.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Peking</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 2 - #144 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room304 - 9:30 AM - 10:00 AM</p> <p><a href='https://2018.igem.org/Team:Peking'>Synthetic organelle: A phase-separation-based multifunctional toolbox</a></p> <p>Membrane-less organelles are involved in many essential biological processes. In order to orchestrate various cellular regulation using a single platform and to make the response dynamics more flexible, we put forward the idea to construct a 'synthetic membrane-less organelle' as a multifunctional toolbox in yeast. In this case, certain components are self-organized to form liquid droplets through phase separation, which require multivalence and interaction as prerequisites. Based on this principle, we fused interactional modules into homo-oligometric tags (HOTags) to form droplets in the yeast. Various interactional modules provide diverse control methods while different promoters alter the features and kinetics of our systems. Beyond quantitative analysis of the foundational system, we verified the feasibility of several potential functions theoretically and experimentally, including reaction crucible, sequestration, organization hub, sensor, etc. In the future, by replacing functional modules with other parts, this system would conduct functions not included in the current project.<p></div>
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<div class='column half_size'> <h2>Pittsburgh</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Information Processing<br><b>Poster: </b>Zone 4 - #227 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room306 - 9:00 AM - 9:30 AM</p> <p><a href='https://2018.igem.org/Team:Pittsburgh'>Chronological Event Recording of Stimuli using CRISPR/Cas9-mediated Base Editing‚Ä®</a></p> <p>The ability to measure and record molecular signals in a cell is critical. Current systems are limited in that they can only take a 'snapshot' of the environment, preventing scientists from understanding event order. Previously systems have utilized a CRISPR/Cas9 base editor complex (BE), which can record information in DNA by producing permanent single nucleotide changes; however, recording capability was limited to logging an average concentration of stimuli over a period of time. Our system builds upon these foundations by designing a method of true chronological event recording. By introducing recording plasmids with repeating units of DNA and multiple gRNA to direct our base editor construct, we can achieve true temporal resolution of stimuli. Furthermore, we simplified the readout, so inexpensive laboratory equipment can be used. This technique will provide an understanding of the order in which molecules and proteins appear in systems, illuminating the hidden, casual relationships.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Pittsburgh CSL</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 1 - #76 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room306 - 11:30 AM - 12:00 PM</p> <p><a href='https://2018.igem.org/Team:Pittsburgh CSL'>Energy on Demand from Symbiotic Microbial Fuel Cells</a></p> <p>The burning of fossil fuels generates greenhouse gases that damage the atmosphere and impacts the global environment. Energy from sustainable sources such as wind and solar is difficult to store for times when no wind is blowing or no sun is shining. The purpose of this project is to show a possible symbiotic relationship between Shewanella oneidensis and E.coli to generate energy. This allows the use of energy in a eco friendly way. In order to build a sustainable energy source for energy on demand we created a system using living organisms. E.coli was engineered to synthesize lactate which will then be used to feed a Shewanella biofilm. Shewanella oneidensis is a bacterium notable for its ability to reduce metal ions, live in environments with or without oxygen and when incorporated into a microbial fuel cell produced voltage. Results of co-culture experiments to test the symbiotic relationship will be presented.<p></div>
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<div class='column half_size'> <h2>Purdue</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Diagnostics<br><b>Poster: </b>Zone 5 - #318 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room309 - 2:45 PM - 3:15 PM</p> <p><a href='https://2018.igem.org/Team:Purdue'>A Novel Paper-Based Diagnostic Assay For The Detection of Candida Albicans</a></p> <p>The common yeast infection, vulvovaginal candidiasis, affects 75% of women throughout their lifetime. This disease is caused by the fungal pathogen Candida albicans, which is also a major cause of systemic candidiasis, a rarer but deadly disease with up to a 49% lethality rate. Existing diagnostics for both infection types are lacking in accessibility, speed, or accuracy ¬ñ far from the ideal test. This project focuses on creating such a test by detecting farnesol and tyrosol, biomarkers indicative of C. albicans, by binding them to the split proteins pqsR and tyrosinase. Upon binding, a split horseradish peroxidase catalyzes and produces a blue color on a paper test strip by oxidizing the substrate tetramethylbenzidine. This test will produce a colorimetric output for a simple-to-understand diagnosis without any infrastructure. It also may provide an easy and cheap way to diagnose candidiasis worldwide, reducing antifungal abuse.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Queens Canada</h2> <p> <b> Region: </b>North America - Canada<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Diagnostics<br><b>Poster: </b>Zone 5 - #282 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room309 - 12:00 PM - 12:30 PM</p> <p><a href='https://2018.igem.org/Team:Queens Canada'>In The Glow: Luminescent Biosensors for Hormone Detection and Diagnosis</a></p> <p>This year's project has focused on the production of protein biosensors for detection, diagnosis, and monitoring of salivary hormones. We have taken two approaches to our design process. Firstly, we constructed a reagent-less, and continuous glucocorticoid sensor which utilizes changes in Fluorescence Resonance Energy Transfer to detect hormones. Secondly, we have begun developing a novel, and easy to use biosensor which utilizes ligand-dependent intein splicing to produce a luminescent signal. The resulting signal could then be quantified, providing a dose-dependent measurement of analytes. In addition to our laboratory work, we have constructed a complimentary diagnostic pacifier featuring a built in luminometer, allowing for the potential to passively collect, and analyze saliva in a portable and non-invasive fashion. In practice, a child would use the pacifier as normal, and the baby's salivary hormones would be collected, analyzed, and wirelessly transmitted to the parent or a healthcare professional through a smartphone application.<p></div>
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<div class='column half_size'> <h2>RDFZ-China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 3 - #201 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room302 - 12:00 PM - 12:30 PM</p> <p><a href='https://2018.igem.org/Team:RDFZ-China'>Xscape</a></p> <p>Biosafety has always been a major challenge. Leakage of recombinant DNA to the environment may cause undesirable environmental consequences. Aiming to solve this urgent issue, we constructed three devices: two for industrial fermentors, and one for drug delivery bacteria. The first device for use in fermentors utilized thermal-sensitive and quorum system sensors, PhlF and sRNA as logic gate components, and DNase as actuator, forming a NOR gate; the second used a cold-regulated device and a LuxR-repressed promoter as sensors, forming an AND gate. Both devices will self-induce DNA degradation if recombinant bacteria are accidentally leaked into environment. Moreover, with multiple thermal-sensitive devices and gas vesicles, we could perform noninvasive monitoring of the bacteria, drug release by heating tissue at the nidus, and initiation of DNA degradation by applying a higher temperature.  For human practice, we mainly focused on current biosafety issues, including biohackers, sales of hazardous materials and local laws.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>REC-CHENNAI</h2> <p> <b> Region: </b>Asia - India<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 5 - #295 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room311 - 11:30 AM - 12:00 PM</p> <p><a href='https://2018.igem.org/Team:REC-CHENNAI'>FLUOROSCREEN</a></p> <p>With the ever-growing demand for designing proteins with better sensitivity, selectivity, stability, and affinity, oligo-based site-directed mutagenesis has become instrumental and indispensable in Genetic Engineering. The conventional method is considered cumbersome, for it relies on replica-plating to screen the mutants based on the reversal in resistance and sensitivity to two antibiotics: Tetracycline and Ampicillin respectively. It also necessitates sub-cloning the mutated gene in an expression vector to ultimately express the mutant-protein. Our orthogonal system facilitates fluorescence-based screening of mutants, using a novel 'Red-Green' Dual-Fluorescent GFP-mutant. While point-mutating the gene-of-interest, introducing a single point-mutation in the coding sequence of this GFP-mutant codes for its 'Green-Only' isoform. The loss of red fluorescence in the transformed colonies is indicative of successful mutagenesis. Apart from simplifying the screening method, this system facilitates the mutagenesis of the target-gene and expression of the mutated-gene using a single plasmid, thus eliminating the need for sub-cloning.<p></div>
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<div class='column half_size'> <h2>Rheda Bielefeld</h2> <p> <b> Region: </b>Europe - Germany<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 3 - #196 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room208 - 5:15 PM - 5:45 PM</p> <p><a href='https://2018.igem.org/Team:Rheda Bielefeld'>Interpoll-Scanning the air for pollen</a></p> <p>A great percentage of Earth's population is allergic to specific substances. Approximately 20 million people living in Germany are allergic to different plants, animals and much more, but about half of them are allergic to pollen. We want to help these people suffering from an allergy to pollen by advising them which dose of medicine is necessary for every day. Although there is already useful medicine, we are convinced that we can optimize the use of such medicine and reduce the exposure to unnecessary drugs which have negative side effects like lowering the personal performance capacity, becoming tired and many others. Therefore we use a DNA-based method using pectinase and cellulase to open the pollen and isolates their DNA. This DNA will be used for a PCR with specific primers against the birch allergen 'Bet'. By hereby identifying pollen we aim to measure the current pollen exposure in the air.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>RHIT</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 4 - #231 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room309 - 4:45 PM - 5:15 PM</p> <p><a href='https://2018.igem.org/Team:RHIT'>PEBBLE - Modifying Escherichia coli to Degrade and Metabolize Polyethylene Terephthalate Plastic into Usable Products</a></p> <p>A recently discovered bacteria, Ideonella sakaiensis, degrades polyethylene terephthalate (PET) plastic into ethylene glycol and terephthalic acid using the enzymes PETase and MHETase. As genetic engineering methods have not been well-developed for this organism, we are engineering this pathway into Escherichia coli, a model organism. Other researchers have mutated PETase's active site to increase its substrate turnover. We are cloning the DNA sequences of these mutated enzymes into an E. coli plasmid and developing a second plasmid to overexpress the native E.coli enzymes for ethylene glycol metabolism. With both plasmids, the transformed bacteria should be able to survive solely off the PET carbon. The only byproduct would be terephthalic acid, a precipitate which can be recycled into new plastic. Computer simulations of the pathway gave us predictive degradation rates at optimum conditions. Implementation of these bacteria in the future could address the concern of plastic build-up in our world.<p></div>
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<div class='column half_size'> <h2>Rice</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 1 - #30 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room208 - 11:30 AM - 12:00 PM</p> <p><a href='https://2018.igem.org/Team:Rice'>PORTAL: A Portable Transcription-Translation System to Improve Cross-Species Genetic Circuit Reliability</a></p> <p>The unique properties of non-model bacteria can expand the applications of synthetic biology. However, currently there are few reliable tools for engineering non-model bacteria. A central obstacle to the development of such tools is the dependence of circuit expression on host machinery. To address this problem, we developed PORTAL, a system which uses T7 transcription and orthogonal ribosomes to insulate the circuit from host processes. We characterized PORTAL in four E. coli strains, Shewanella oneidensis, and Pseudomonas putida, comparing PORTAL-driven and host-driven expression of a reporter. To design orthogonal ribosomes, we created software that analyzes binding energies of 16S rRNA and determines the optimal orthogonality-promoting anti-Shine-Dalgarno mutations. We created a model that simulates the performance of PORTAL and shows that the system is minimally sensitive to metabolic differences. PORTAL presents a tunable 'virtual machine' to facilitate insulated synthetic gene circuit expression in non-model bacteria.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>RMHS Maryland</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 3 - #197 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room306 - 4:45 PM - 5:15 PM</p> <p><a href='https://2018.igem.org/Team:RMHS Maryland'>Conversensations: Developing a Two-Way Quorum-Sensing Feedback Loop and Characterizing Dose-Dependent Sensitivity to Realistic Autoinducer Concentrations</a></p> <p>Quorum sensing, a form of bacterial cell-to-cell communication reflecting cell population fluctuations, can be adapted to facilitate multi-population collaboration. Our project combines two different QS systems to create a novel feedback loop in an E.coli co-culture, where each population synthesizes a different fluorescent protein in response to the other population's autoinducer production. Population A is a LuxS knockout that produces AI-1 and RFP in response to AI-2, while Population B secretes a constant level of AI-2 and expresses GFP in response to AI-1. In co-culture, each population induced fluorescence in the other, indicating a successful two-way quorum sensing system. In the process, we also generated novel characterization data for two Biobricks, demonstrating for the first time that BBa_K575024 exhibits minimal leaky expression and is dose-dependent over a range of realistic AI-1 concentrations (5-1000 nM). We also provide the first evidence that BBa_K575026 is induced by AI-1.<p></div>
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<div class='column half_size'> <h2>Rotterdam HR</h2> <p> <b> Region: </b>Europe - Netherlands<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Open<br><b>Poster: </b>Zone 1 - #33 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room312 - 2:45 PM - 3:15 PM</p> <p><a href='https://2018.igem.org/Team:Rotterdam HR'>Selective carbon monoxide detection using the CO binding receptor protein CooA in E. coli.</a></p> <p>Modified bacteria that are present in our product contain the CooA receptor gene which codes for the synthesis of a receptor protein named CooA. This CooA receptor can bind with the carbon monoxide derived from the polluted environment. The binding of the CooA receptor with carbon monoxide results in a change of the protein structure. Due to the changed structure, the CooA protein will be able to bind to a CooA sensitive promoter on the bacterial DNA. The binding of the CooA receptor with the promoter enables the synthesis of the enzyme urease. Accordingly, the formed urease converts the urea which is present in the medium into CO2. The released CO2 gas in the medium will be collected. When a certain threshold is reached in the amount of produced gas an increase in the resistance between two electrodes will occur. Finally, the detected change in resistance will activate the alarm.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Ruia-Mumbai</h2> <p> <b> Region: </b>Asia - India<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 2 - #107 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room208 - 2:15 PM - 2:45 PM</p> <p><a href='https://2018.igem.org/Team:Ruia-Mumbai'>Catechewing Coli: The Paan Stain Redemption</a></p> <p>Indiscriminate spitting of red-colored catechu (Paan-) based products is a common practice in India. Paan stains tarnish public places and historical monuments in the country. Although a considerable amount of resources are invested in cleaning these stubborn red-stains, existing methods are ineffective in removing them. Our team designed a dual-component ecologically contained system that will remove these stains more efficiently. The first module employs a four-enzyme system that breaks down the stains into non-toxic byproducts in a targeted manner. The second module interfaces with this degradation system to trigger the destruction of the system's DNA from the environment as a safety measure after the stain-fighting enzymes have been produced. Given the enormity of this social issue, we take a holistic approach to actively engage our community and learn from industry experts, users, cleaners, and policy makers how to effectively remove existing stains as well as prevent new ones.<p></div>
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<div class='column half_size'> <h2>Saint Joseph</h2> <p> <b> Region: </b>Europe - Turkey<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 5 - #294 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room302 - 3:15 PM - 3:45 PM</p> <p><a href='https://2018.igem.org/Team:Saint Joseph'>RAFI - Revolutionary Approach To Fish Infections</a></p> <p>For years, fish industry has been one of the most important economic resources. However , humans were not the only ones consuming this resource; some aquatic bacteria such as Vibrio anguillarum and many other bacteria species have evolved to prey on fish. This has caused huge economic losses in various countries' fish industries. Humans responded to this problem by applying antibiotics, to which bacteria easily developed resistance. Another solution applied was vaccinations but they were ineffective for fish larvae .That's why we need to find an effective solution that can adapt to its ever changing environment. For this we aim to use bacteriophages as a specialized lytic agent to eliminate fish pathogen. Due to resistant nature of bacteria we will support our bacteriophages with an antimicrobial peptide in a recombinant therapy where we will observe any potential synergy against Vibrio anguillarum'. We will execute our experiments in in-vitro environments .<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>SBS SH 112144</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 3 - #203 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room304 - 2:15 PM - 2:45 PM</p> <p><a href='https://2018.igem.org/Team:SBS SH 112144'>The lysis of Cyanobacteria in freshwater ecosystem using Cyanophage lysozyme and its commercial implications</a></p> <p>The rampant growth of cyanobacteria in freshwater ecosystem has become more than an environmental issue. Their incredible ability to multiply and voracious consumption of oxygen often make them a disturbing factor to natural systems. Although effective ways to gather and salvage cyanobacteria have been developed, there are barely any success in decomposing these bacteria. Through background research, our team identified a cyanophage lysozyme, cp-OS lysozyme 1. Alone with other chemicals such as BugBuster, this lysozyme in small reaction systems could lyse the cyanobacteria effectively. Through molecular cloning, protein expression, and the subsequent purification, we were able to acquire the recombinant protein from E. coli cells, and we evaluated its enzymatic activity under different pH and temperatures. We also designed a prototype device in which immobilized lysozyme can be used to lyse cyanobacteria repeatedly. Our research lays foundation for the utilization of cyanobacteria components in agricultural, bioenergetic, and even medical fields.<p></div>
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<div class='column half_size'> <h2>SCAU-China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>New Application<br><b>Poster: </b>Zone 5 - #288 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room311 - 3:15 PM - 3:45 PM</p> <p><a href='https://2018.igem.org/Team:SCAU-China'>Desertification combating strategy: bacterial cellulose biosynthesis in desert surviving cyanobacteria</a></p> <p>Desertification is becoming a serious global problem. Great efforts have been put into the desertification control by introducing various methods. Here, we take advantage of using genetic engineering and synthetic biology as powerful tools to propose a new strategy for the densification control. We use Acetobacter xylinus which is a model bacterium for producing cellulose. Its cellulose can be used for water conserving both soil and moisture. On the other hand, Microcolus vaginatus is a dry land living cyanobacteria which is an ideal bioreactor for producing bacterial cellulose. We cloned seven key genes that are critically required for bacterial cellulose synthesis from Acetobacter xylinus and expressed them in cyanobacteria. Additionally, we employed computer modeling and prediction to optimized the production of cellulose. Finally, we successfully achieved the cellulose production from the transgenic cyanobacteria and its cultivation on sands. Together, we have developed a new and low-cost method for desertification control.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>SCU-China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 4 - #256 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room208 - 11:00 AM - 11:30 AM</p> <p><a href='https://2018.igem.org/Team:SCU-China'>CRISProgrammer</a></p> <p>Inspired by the modularization, call-and-return and do-not-reinvent-the-wheel philosophy in computer programming, we came up with the idea of using the dCas9 to manipulate the expression of proteins and to implement complex logic in E. coli. Ideally, we would like to generate a versatile 'Library strain' containing the CDS of commonly used proteins. Individuals would simply transform a much smaller 'Minimid' which contains specific sgRNAs targeting the sequence of desired proteins into the Library strain, then the dCas9-sgRNA complex can control the expression. To show the practicality of the design, we tested the system in E. coli by using a series of simple logic circuits based on dCas9-sgRNA complex, with fluorescent proteins as reporters. We also thought about the further application of our design in the synthesis of indigo and try to modularize two enzymes that participated. This project will contribute to the construction of engineered bacteria and green manufacturing.<p></div>
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<div class='column half_size'> <h2>SCUT ChinaB</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 5 - #290 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room207 - 11:30 AM - 12:00 PM</p> <p><a href='https://2018.igem.org/Team:SCUT ChinaB'>Plastic Killer - Engineered corynebacterium glutamicum that degrade plastics</a></p> <p>In recent years, the problem of plastic pollution has attracted more and more attention because of its huge amount and ubiquity. Meanwhile, traditional PET treatment methods have problems such as high cost, insufficient degradation, and secondary pollution. Therefore, we have constructed an engineering strain that can degrade PET and convert it into a carbon source. We are going to use Corynebacterium glutamicum in our project which is a food-grade microorganism that is commonly used in the industrial production of foods and amino acids. Our bacteria will firstly degrade PET to p-Phthalic acid(TPA) and Ethylene glycol(EG). Secondly, they will catalyze the TPA to protocatechuatePCA and finally to PDC, which can participate in TCA cycle to provide energy for cell growth and development. All in all, our engineered bacteria have the advantage of effectively degrading PET at a lower cost without secondary pollution.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>SCUT-ChinaA</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 2 - #110 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room312 - 2:15 PM - 2:45 PM</p> <p><a href='https://2018.igem.org/Team:SCUT-ChinaA'>Enhancing limonene biosynthesis by a high efficiency enzyme self-assembly system</a></p> <p>Terpenoid flavor and fragrance compounds (TFFCs) show extensive application in nutraceutical, pharmaceutical and food industries that have rapid grow market demands. The use of GRAS microorganisms to convert natural raw materials into aroma compounds can be described as natural products, which have been considered as one of the most promising strategies. However, fermentive TFFCs produced by engineered microbes mostly only obtain intermediates or low yields of end-product currently. This study proposes a non-conditional yeast Yarrowia lipolytica as a chassis for TFFCs production, in which limonene was chose as target product. By employing synthetic biology technology including gibson assembly, CRISPR/Cas9 and protein scaffold, we develop a high-performance enzyme self-assembling system (HESS) to rewiring the pathway into limonene accumulation. Furthermore, the MVA pathway will be enhanced by overexpression of two rate-limiting enzymes (HMG1 and ERG12) for increasing the production. This project will provide an alternative metabolic engineering strategy for biosynthesis of TFFCs.<p></div>
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<div class='column half_size'> <h2>SDSZ China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 2 - #127 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room306 - 12:00 PM - 12:30 PM</p> <p><a href='https://2018.igem.org/Team:SDSZ China'>Advanced enzymolysis technique for chitosan production</a></p> <p>Chitin is a kind of natural macromolecular substance that can be found abundant in the exoskeleton of arthropods. It could be converted to chitosan, -1, 4- polymer of 2-glucosamine, through deacetylation. Chitosan is significantly soluble and bioactive, widely used in medicine, food industry, and water treatment. However, the current technology that treats chitin with concentrated alkali has led to deficient, unstable chitosan production, and pollution. After learning that Chitin Deacetylase (CDA) could hydrolyze the acetamino group on chitin, we aimed to find out a crystal- chitin-active-enzymes due to the only industrial-available source of chitin. In our research, we chose several CDA and chitinase sequences, synthesized and complemented them with respective domains, and cultivated them in plasmid pET-28a. After inserting plasmids into competent cells and searching for optimal induction condition for expression, we would finally find out maximum viability and model the research for factory production.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>SDU-CHINA</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>New Application<br><b>Poster: </b>Zone 5 - #275 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room207 - 9:30 AM - 10:00 AM</p> <p><a href='https://2018.igem.org/Team:SDU-CHINA'>MetaboLight: Light-controlled Redirection of Metabolic Flux</a></p> <p>In engineering Escherichia coli cell factories, conflicts exist between engineered and endogenous pathways for their competition for metabolite precursors. E.g., the production of polyhydroxybutyrate (PHB) inevitably consumes Acetyl-CoA in the TCA cycle for cell growth. Given cell mass is a key factor of yield, precise switching from growth phase to production phase is significant. Previous studies utilized chemical inducers which are subject to irreversibility & toxic effects. In this project, we addressed these problems by introducing light in E. coli transcriptional control. A switch redirecting metabolic flux from growth to PHB production was built using a green light responsive CcaS/CcaR two-component system and a Type I-E CRISPR-Cas System. Upon green light illumination, the gene cluster phbCAD is transcribed to initiate PHB synthesis. A crRNA is transcribed simultaneously and binds a deactivated cas3 (mimicking dcas9) to block the expression of gltA, an essential gene in TCA cycle and cell growth.<p></div>
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<div class='column half_size'> <h2>SFLS Shenzhen</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 5 - #298 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room312 - 4:45 PM - 5:15 PM</p> <p><a href='https://2018.igem.org/Team:SFLS Shenzhen'>Early detection of breast cancer using miRNA-155 and miRNA-10b</a></p> <p>The global incidence of breast cancer has been rising since the late 1970s. According to the data of breast cancer incidence released by the National Cancer Center and the Center for Disease Control in 2009 , the incidence of breast cancer in the registered areas ranks the first in women with malignant tumor. Our project is to use miRNA--miRNA155 and miRNA10b--in human serum as biomarkers to detect early forms of breast cancer. Toehold switches are used for the detection and the product can be suited to any other early cancer detections if the trigger part is changed to bind with other miRNA sequences. When both kinds of miRNAs are binded,our artificial designed biological system will produce green fluorescent protein.Based on it,we can detect fluorescence and calculate microRNA expression level.We're trying to make our project become a convenient and cheap disease-detecting method in people's daily life.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>ShanghaiTech</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 3 - #209 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room208 - 2:15 PM - 2:45 PM</p> <p><a href='https://2018.igem.org/Team:ShanghaiTech'>Fast & Fidelity - a circuit system achieving high input-output concurrence</a></p> <p>Input, controller, and output have been the standard procedure of engineered regulatory biocircuit. However, the precise input-to-output control may fail at times mainly due to (i) delayed responses from input signals to output signals, and (ii) unexpected interactions between the host and exogenous circuits. For example, previous iGEM projects primarily focused on the single time response of systems, which underestimated the fact that continuously changing inputs may cause the disorder of output signals. Therefore, a system needs to be constructed for rapidly responding to the changing input signals and eliminating the superposition between outputs from different input signals. In this context, we design a high-fidelity control system with a feedback loop and orthogonal ribosome, which allows the outputs to respond precisely to the changing input signals. We envision that our control system will offer the synthetic biology community a novel solution to manipulate uncertain input.<p></div>
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<div class='column half_size'> <h2>SHPH-Shanghai</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 2 - #146 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room312 - 5:15 PM - 5:45 PM</p> <p><a href='https://2018.igem.org/Team:SHPH-Shanghai'>A new biological method to degrade biofilm.</a></p> <p>Our team finds that lactic acid produced by Lactobacillus delbruckii ND02 is an acid with considerable effect of biofilm degradation. In order to support Lactobacillus delbruckii for acid secretion, lysozyme is used to hydrolyze polysaccharides in the biofilm to smaller fragments of mono and disaccharides. Sequence that codes for lysozyme is combined with sequence of Lactobacillus breris that codes for S-layer protein signal peptide, which promotes the secretion of lysozyme. The combined sequence is then transferred to the acid producing Lactobacillus delbruckii for expression.With nutrients provided by hydrolyzed polysaccharides, Lactobacillus delbruckii secretes lactic acid that further degrades the biofilm. As the pH of the system gradually decreases, the ability of Lactobacillus delbruckii adhering to biofilm increases, In addition, hydrogen peroxide is secreted for sterilization when the pH drops below 3. This produces a positive feedback loop for biofilm degradation and its effect is expected to be significant.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>SHSBNU China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 1 - #57 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room309 - 5:15 PM - 5:45 PM</p> <p><a href='https://2018.igem.org/Team:SHSBNU China'>Biofilm x Laccase</a></p> <p>The textile industry creates environmental problems due to the release of highly polluting effluents containing substances from different stages of dyeing that are resistant to light, water, and various chemicals. These dyes would do harm to human health and ecological system. The biological degradation of dyes is an economical and environmentally friendly alternative. Thus, the aim of team SHSBNU_China is to create a biofilm for discoloration of synthetic reactive dyes. The team would use biofilm of E. coli and engineered it to contain the laccase CotA from B. subtilis, which is a polyphenol oxidase that can catalyze the degradation of dyes. In the form of living biofilm, the bio-degradation will be more resistant to stress from environment or different effluents.<p></div>
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<div class='column half_size'> <h2>SHSID China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 1 - #10 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room302 - 2:15 PM - 2:45 PM</p> <p><a href='https://2018.igem.org/Team:SHSID China'>Everglow</a></p> <p>With electricity consumption increasing across the globe, the conservation of energy has become a topic of major concern. Our team has devised an innovative solution to reduce electricity usage by attempting to create genetically modified bioluminescent plants. By altering particles on the microscopic level, we hope to create plants that can glow and thus replace electricity in the future. To these ends, our team conducted experiments to transfer the lux operon, a cluster of genes (LuxCDABEG) that control bioluminescence in the bacterial species Aliivibrio fischeri, to plant species like Nicotiana tabacum. We also attempted to insert an extra copy of LuxG to enhance the effects of bioluminescence. The results are promising and point to the possibility of creating a greener alternative to current lighting. Furthermore, we will design a new plasmid that can detect potential stress factors like ethanol and report the signal with stronger bioluminescence.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>SHSU China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 3 - #204 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room302 - 2:45 PM - 3:15 PM</p> <p><a href='https://2018.igem.org/Team:SHSU China'>ExoBlood</a></p> <p>We will engineer human cell line to produce exosomes that work as cellular hemoglobin based oxygen carriers. They can be used in blood transfusion and stroke treatment. We will first try to secrete human hemoglobin subunits and other required proteins for oxygen transport. Then we will focus on loading the protein cargo into the exosome, which we have chosen for the reason of immune-compatibility and easy production. The exosomes will be loaded endogenously with hemoglobin using membrane anchored proteins (CD63) or using exosome-forming pathways inside the cell (WW tag and Ndfip1). By doing this, we will produce an efficient method for future iGEM teams to create protein-loaded exosomes that can be used in therapeutics and develop a potential blood replacement.<p></div>
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<div class='column half_size'> <h2>SIAT-SCIE</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 3 - #192 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room309 - 4:45 PM - 5:15 PM</p> <p><a href='https://2018.igem.org/Team:SIAT-SCIE'>COPE: CRISPR/Cas9-OMV-signal Peptide Encapsulation technique mediated targeting of oncogene in Fusobacteria Nucleatum</a></p> <p>Outer Membrane Vesicles(OMVs) are a ubiquitous type of vehicles that continuously bud off from gram-negative bacteria's outer membrane, serving as a communicative tool between bacteria. As natural kins to the bacterial membrane, they can preserve the integrity and bioactivity of sensitive Cas9 proteins and single guide RNA (sg-RNA) within, when used as a delivery tool. Our project aims to construct a system that uses OMVs as vectors for transporting the Cas9 protein and sgRNA into the host cells to achieve efficient muting of the virulent gene of interest in its genome. We expressed Cas9 and sgRNA together with a signal peptide enabling them to reach the bacteria's periplasm to be encapsulated by OMVs. We expect this technique would reveal more flexible approaches in both in vitro and in vivo genetic engineering, thus enlarging the armamentarium of Synthetic Biology.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>SJTU-BioX-Shanghai</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Diagnostics<br><b>Poster: </b>Zone 4 - #234 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room304 - 11:00 AM - 11:30 AM</p> <p><a href='https://2018.igem.org/Team:SJTU-BioX-Shanghai'>ECHO: E.coli for Colon Health Observation</a></p> <p>Colorectal cancer being a severe illness worldwide, its mortality rises along with diagnosis delay. As a result, an accurate method for early diagnosis is in desperate need. Therefore, this year our team comes up with an engineered E.coli used for early, non-invasive detection of colorectal cancer. Due to the combination with ultrasound technique, we name it, ECHO. When our device arrives at the colorectal area after capsule degradation, it stabilizes on cancerated tissue through antigen-peptide binding, meanwhile expressing gas vesicles in vivo, enabling the rapid detection and location of the cancer foci using ultrasound. Besides usage on detection, ECHO also synthesizes azurin used to eliminate cancer cells after being triggered by environmental factors in cancerated area. At last, after ultrasound detection and medicine synthesis, arabinose will be consumed to trigger self-destruction pathway. To sum up, our device introduces an applicable and innovative non-invasive technique in early diagnosis of colorectal cancer.<p></div>
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<div class='column half_size'> <h2>SJTU-software</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Software<br><b>Poster: </b>Zone 3 - #187 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room311 - 4:45 PM - 5:15 PM</p> <p><a href='https://2018.igem.org/Team:SJTU-software'>Metlab: a metabolic network alignment tool</a></p> <p>Our project, Metlab, is a metabolic network alignment tool. User can input a pathway designed by themselves, then our software can align the pathway to the networks in the database, and show the aligned part of the networks. With the help of our software, user can discover the natural pathways similar with the pathway they design.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>SKLMT-China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 1 - #41 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room310 - 9:00 AM - 9:30 AM</p> <p><a href='https://2018.igem.org/Team:SKLMT-China'>Planet protect plan</a></p> <p>Pseudomonas fluorescence Pf-5 is kind of biocontrol bacteria which can be used in the environmental protection. Compared with E.coli, the developed organisms, the toolkit for Pseudomonas fluorescence seems hasn't been exploited well. This year, SKLMT-China wants to construct a library of artificial constitutive promoters as a useful tool for the model-based fine-tuning of gene expression in Pseudomonas fluorescence. The strength of different promoters will be characterized by a reporter gene, firefly luciferase. Given that P. fluorescence pf-5 has a poor ability to degrade nicotine in the natural environment, we hope to engineer this bacteria with a nicotine degradation gene cluster (about 30Kb) from P.putida S16 by red/ET recombination technology. In this way, the nicotine degradation pathway in P. fluorescence pf-5 could be improved so it can degrade nicotine more efficiently. Combined with the promoter library, pf-5's nicotine degradation efficiency can be easily controlled.<p></div>
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<div class='column half_size'> <h2>SMMU-China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 2 - #118 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room302 - 9:00 AM - 9:30 AM</p> <p><a href='https://2018.igem.org/Team:SMMU-China'>CaRTIN: Reversion of Failing Heart with a Controlled Gene-therapy via Cardiomyocyte RyR2 Targeting Intra-Nanobody</a></p> <p>Chronic PKA phosphorylation of RyR2 has been shown to lead to cardiac dysfunction. We designed a targeting device, CaRTIN (Cardiomyocyte RyR2 Targeting Intra-Nanobody), to implement RyR2-specific inhibition of phosphorylation. Here, one of the isolated RyR2 nanobodies, AR185, inhibiting RyR2 phosphorylation in an in vitro assay was then chosen for further investigation. We investigated the potential of adeno-associated virus (AAV)-9-mediated cardiac expression of AR185 to combat post-ischemic heart failure. Adeno-associated viral gene delivery elevated AR185 protein expression in rat heart, and this administration normalized the contractile dysfunction of the failing myocardium in vivo and in vitro. Moreover, CaRTIN therapy to failing cardiomyocytes reduced sarcoplasmic reticulum (SR) Ca2+ leak, restoring the diminished intracellular Ca2+ transients and Ca2+ load and reversed the phosphorylation of RyR2. To achieve controlled intra-nanobody release, a BNP promoter based platform was also accessed. Our results established a role of CaRTIN as a promising therapeutic approach for heart failure.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>SMS Shenzhen</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 1 - #47 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room208 - 9:30 AM - 10:00 AM</p> <p><a href='https://2018.igem.org/Team:SMS Shenzhen'>The prevention and treatment of dental caries</a></p> <p>This year, SMS_Shenzhen team will focus on using synthetic biologic method to prevent dental plaque. Dental plaque can be led by Streptococcus mutans, a bacteria lives in human's mouth. Clinging to the teeth in thin layers called biofilm, S. mutans digests sucrose and produces acids that can eat into enamel and cause cavities. Specifically, dextran is the main component of the biofilm. We find two enzymes, the first one is named 'Dextranase', which can hydrolyze the dextran in the biofilm; and the second one is named 'FruA', which can decompose the resource that S. mutans uses to produce bioflim. The gene of these two enzymes are cloned into E. coli and Lactobacillus. In our experiment, we would use E.coli to produce these two enzymes for relative measurement like enzyme activity. Then, for commercial design, we would produce leben with our Lactobacillus which can secrete these two enzymes.<p></div>
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<div class='column half_size'> <h2>Sorbonne U Paris</h2> <p> <b> Region: </b>Europe - France<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 4 - #214 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room208 - 3:15 PM - 3:45 PM</p> <p><a href='https://2018.igem.org/Team:Sorbonne U Paris'>Suga[R]evolution</a></p> <p>Sugar is the main source of energy for the cell factories used in synthetic biology. However, its massive production has dramatic impacts on the environment. Therefore, in order to bring a solution to this serious environmental issue, we want to engineer a green microalgae, Chlamydomonas reinhardtti, to allow an ecofriendly sugar production within marine waters, limiting the competition with arable lands. Moreover, to be able to spread the use of microalgae as a chassis, more genetic tools to engineer it are still required. To do so, we will enrich the recently developed Modular Cloning (MoClo) toolkit for C. reinhardtti with a synthetic retrotransposon to generate in vivo continuous directed evolution. It will be the first time that such genetic tool is applied to non-baring plasmid cells such as microalgae. This approach enables the generation of new proteins with tailor-made functional properties as well as the optimization of biological systems.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>SSHS-Shenzhen</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 1 - #24 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room208 - 9:00 AM - 9:30 AM</p> <p><a href='https://2018.igem.org/Team:SSHS-Shenzhen'>Beetle Rival ---An RNAi-based approach for Phyllotreta striolata control</a></p> <p>Phyllotreta striolata is one of the most destructive insects worldwide. However, the present insect control strategies have certain limitations, for example, chemical insecticide applications will cause dietary pollution and environmental destruction. Here, we aim to develop an RNAi-based approach for controlling P. striolata. This approach is to topically apply exogenous siRNAs/shRNAs onto vegetables, ingestion of the sprayed siRNAs or shRNAs by P. striolata will induce the RNAi mechanism in the insect and lead to its death. In our project, siRNAs/shRNAs were designed based on the mRNA sequences of their target genes. The effect of both siRNAs and shRNAs in mediating RNAi in P. striolata were examined. Experimental results show that both siRNAs and shRNA could successfully silence their target genes, which was demonstrated by the survival rate decrease after siRNA or shRNA treatment. Our project provides an environmentally friendly approach for insect control.<p></div>
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<div class='column half_size'> <h2>SSTi-SZGD</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Manufacturing<br><b>Poster: </b>Zone 4 - #247 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room309 - 10:00 AM - 10:30 AM</p> <p><a href='https://2018.igem.org/Team:SSTi-SZGD'>HYALURONIC ACID MICRO FACTORY : A BACTERIUM PRODUCES LOW MOLECULAR WEIGHT HYALURONIC ACID</a></p> <p>The production of hyaluronic acid(HA)has been changed from traditional animal tissue formulation to microbial fermentation. However, there is no report that tissue cells or microorganisms can directly produce low molecular weight HA . In order to prepare low molecular weight HA , physical and chemical methods are needed. However, there are many drawbacks in physical and chemical methods, such as poor product stability, low efficiency, complex reaction conditions and possible environmental pollution. This year our project constructed a recombinant strain Bacillus subtilis 168E which could directly produce different molecular weight HA products by regulating the activities of LHAase. The HasA gene and identified precursor genes was transferred into Bacillus subtilis. Since HA of high molecular weight was produced at this time, we transferred the LHAase gene into Bacillus subtilis 168 which is from leech resources coding hyaluronidase. Therefore the HA could be enzymatic hydrolyzed to different molecular weight.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>St Andrews</h2> <p> <b> Region: </b>Europe - United Kingdom<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Diagnostics<br><b>Poster: </b>Zone 4 - #225 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room302 - 4:45 PM - 5:15 PM</p> <p><a href='https://2018.igem.org/Team:St Andrews'>A system for detection of bacterial cell lysis and the presence of biofilms</a></p> <p>A split mNeongreen fluorophore system was employed such that one half of the protein was retained within a certain population of Escherichia coli, while a different population exported the other component. Upon lysis of the former group, the two protein domains associated to form the complete molecule, which fluoresced detectably. Regarding the detection of biofilms, several methods were tested. An mCherry fluorophore was fused to binding proteins for each of the following components of biofilms: the polysaccharides alginate and Psl (major components of the biofilms of Pseudomonas aeruginosa), cellulose, and double stranded RNA. Studies were carried out to determine which of these most accurately predicted the presence or absence of biofilms as compared with the results of traditional detection methods.<p></div>
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<div class='column half_size'> <h2>Stanford</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>New Application<br><b>Poster: </b>Zone 2 - #149 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room304 - 5:15 PM - 5:45 PM</p> <p><a href='https://2018.igem.org/Team:Stanford'>A transcription-inducing bacterial detection platform for DNA, small molecules, and proteins</a></p> <p>Two-hybrid systems are a well-established tool for screening protein-protein interactions in yeast and bacteria; however, there is little precedent of using these systems for detection. By swapping bait and target proteins for single-chain antibodies and dCas9, we have adapted a bacterial two-hybrid system as a modular E. coli-based detection platform for small molecules, proteins, and DNA. While most whole-cell detection methods indicate the target molecule's presence by activating a visible reporter, our system initiates transcription of a downstream gene. This allows us to activate gene expression in response to a specific signal, effectively turning any DNA sequence, small molecule, or protein into a potential transcription factor. This holds tremendous promise as a safety mechanism for engineered bacterial strains: if an undesirable mutation or molecular product is detected within a cell, our system can kill the cell by activating an apoptotic gene, or express a fluorescent protein for live-cell sorting.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Stanford-Brown-RISD</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Manufacturing<br><b>Poster: </b>Zone 1 - #38 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room306 - 11:00 AM - 11:30 AM</p> <p><a href='https://2018.igem.org/Team:Stanford-Brown-RISD'>Functionalizing mycotecture</a></p> <p>A turtle carries its own habitat. While it is reliable, it costs energy. NASA makes the same trade-off when it transports habitats and other structures needed to lunar and planetary surfaces increasing upmass, and affecting other mission goals. But what if it didn't have to be transported from earth? What if it could be grown on planet? The Stanford-Brown-RISD iGEM team proposes to explore the use of fungal mycelium, the vegetative structure of fungi, as a light-weight, durable material that could be grown on planet using spores to create habitats and other necessary items. The team will focus on developing a design for a habitat from mycelium as a proof of concept, and using synthetic biology to enhance the filtration and adhesion capabilities of the mycelium. The team will further explore the implications and uses of these biodegradable, self-growing structures made of fungi on Earth.<p></div>
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<div class='column half_size'> <h2>Stockholm</h2> <p> <b> Region: </b>Europe - Sweden<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 5 - #273 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room304 - 12:00 PM - 12:30 PM</p> <p><a href='https://2018.igem.org/Team:Stockholm'>Biotic Blue: Fighting antibiotic pollutants in the Baltic Sea</a></p> <p>Antibiotics are among the most impactful polluters of water resources. Their presence negatively affects the environment due to ecotoxicity and potential contribution to antibiotic resistance. Sulfamethoxazole (SMX) is among the most prevalent and persistent antibiotics in the Baltic Sea. We want to tackle this problem by harnessing the oxidative power of a laccase originating from Trametes versicolor. This enzyme has the capacity to oxidize a wide range of aromatic compounds. We aim to express this laccase in Pichia pastoris and engineer its ability to inactivate SMX using advanced in silico rational design methods. Enzyme activity, SMX removal and toxicity assays were performed for analysis. In our final product, the laccase will be immobilised on magnetic beads, creating a reusable recovery system powered with magnetism. It can be implemented at wastewater treatment facilities or at entering points of the sewage system in hospitals, elderly homes and houses.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Stony Brook</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Energy<br><b>Poster: </b>Zone 2 - #163 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room302 - 3:15 PM - 3:45 PM</p> <p><a href='https://2018.igem.org/Team:Stony Brook'>The Sucrose Factory</a></p> <p>In 2017, humans released ~32.5 gigatons of CO2 into the atmosphere. Even if anthropogenic carbon emissions ended today, the CO2 in our atmosphere would persist for thousands of years, causing ocean acidification and global warming. Current carbon sink technology is not economically feasible and would cost trillions of dollars at modest estimates. We believe the solution lies in cyanobacteria - photosynthetic prokaryotes - as they were the first organisms to sink carbon dioxide billions of years ago and are some of the most efficient autotrophs. Our approach is to induce sucrose secretion for the industrial production of biofuels and bioplastics, while simultaneously sinking CO2. Additionally, to address the lack of promoters available for cyanobacteria synthetic biology research, our team developed a variety of constitutive, light-inducible, and nutrient-repressible promoter BioBricks for our strain of Synechococcus elongatus. We hope these promoters will be used to produce other high value carbon sinking products.<p></div>
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<div class='column half_size'> <h2>Stuttgart</h2> <p> <b> Region: </b>Europe - Germany<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Manufacturing<br><b>Poster: </b>Zone 5 - #303 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room304 - 3:15 PM - 3:45 PM</p> <p><a href='https://2018.igem.org/Team:Stuttgart'>The Anti Germ Coating - TAGC</a></p> <p>To stop the spreading of germs in public places is an issue everyone can agree on its usefulness. Our team aims to produce an antimicrobial surface coating which tackles this problem. This coating, called 'The Anti Germ Coating', TAGC, consists of a chitosan matrix, coupled with rhamnolipid and nisin. All of these substances have shown antimicrobial properties in previous studies. During the iGEM competition we produced two BioBricks until this day, one for nisin-production and one for chitosan production. A third BioBrick, which should enable rhamnolipid production is currently under construction. Two approaches of coupling are used to generate our coating. The first method uses a surface-accessible tyrosine to couple a modified nisin to chitosan enzymatically. Chemical linkage of rhamnolipid is achieved by using divinyl adipate, which acts as a cross-linker. Antimicrobial properties of the coating are currently investigated. First results seem to be very promising.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>SUIS Shanghai</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 5 - #320 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room310 - 2:45 PM - 3:15 PM</p> <p><a href='https://2018.igem.org/Team:SUIS Shanghai'>Better Together: Engineering Bacteria for Symbiotic Relationships with Micro Algae.</a></p> <p>Although numerous strains of microalgae have already been identified as being useful for biotechnology purposes, to make commercial up-scaling of algal production cost effective, research into novel approaches to enhance microalgae growth, and their products is needed. Microalgae and bacteria have existed together from the early days of evolution. This co-evolution provides an interesting avenue for industrial biotechnology exploration. Synthetic biology presents us with an opportunity to rationally design and construct microbial communities with well-defined objectives. The co-cultivation of engineered bacteria and micro-algae provides the possibility for enhancing associations between these populations. We aim to engineer a strain of E.coli which will help increase the biomass of microalgae through nutrient-exchange-based mutualism. Our engineered bacterium was designed to express the gene cluster for the biosynthesis of Vibrioferrin, a type of siderophore. Our construct will allow for the increased bioavailability of iron for many species of microalgae once co-cultured.<p></div>
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<div class='column half_size'> <h2>SUSTech Shenzhen</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 5 - #263 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room207 - 12:00 PM - 12:30 PM</p> <p><a href='https://2018.igem.org/Team:SUSTech Shenzhen'>A 'Time-saving Machine' for Genetic Screening in Two-Cell System</a></p> <p>With rapid development of Molecular and Cellular Biology, we know more about what's in a cell but still know little about how cells interact among populations. Cell-Cell Interactions form a complicated signaling network which is far beyond our imagination. SUSTech 2018 Team developed a 'time-saving machine' to study cell signaling networks based on genetically engineered Two-Cell system, a Secreting and Responding cell. Wnt signaling pathway was our proof-of-principle. Secreting cells secret Wnt signal and were modified by CRISPR-Cas9 knockout system for genetic screening on Wnt secretion. Responding cells were constructed by inserting a strong TCF promoter with GFP fluorescence for visualization of Wnt signal level. Two types of cells were then encapsulated by our microfluidic system producing thousands of Two-Cell droplets at a time. Unlike traditional coculture method, this is time-saving. In future, our systems may have wider applications in synthetic biology, drug screening and immunological recognitions.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>SYSU-CHINA</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 1 - #1 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room306 - 4:15 PM - 4:45 PM</p> <p><a href='https://2018.igem.org/Team:SYSU-CHINA'>Braking Bad--Torwards a safer CAR-T therapy</a></p> <p>CAR-T therapy is one of the most promising treatment for cancer, with multiple ongoing clinical trials worldwide and 2 therapies approved by the FDA. However, without proper control after administration of CAR-T cells, severe adverse effects may bring fatal risks to the patients, especially during the clinical trial stages. While suicide switches serve as common methods for controlling adverse effects, they completely halt the expensive treatment, and repeating the treatment process could be a burden for the patients, both physically and financially. To provide a safer yet affordable CAR-T therapy, we developed a reversible safe switch controlled by small molecules called CAR BRAKE. By expressing U24 protein of the human herpesvirus 6A under the control of tet-ON promoter, we can downregulate CAR molecules on the cell surface through endosomal recycling inhibition. This could potentially be used as a universal add-on for all CAR-Ts and TCR-Ts to ensure safety.<p></div>
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<div class='column half_size'> <h2>SYSU-Software</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Software<br><b>Poster: </b>Zone 1 - #29 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room304 - 5:15 PM - 5:45 PM</p> <p><a href='https://2018.igem.org/Team:SYSU-Software'>CO-RAD: Collaborative optimization platform with recommendation, analysis and design</a></p> <p>Designing genetic circuits and protocols by teamwork is pervasive for synthetic biologists, but it's still hard to cooperate with partners using traditional collaborative software for the complexity and hierarchy in synbio design. Here, we develop an open-access software CO-RAD to facilitate the collaboration, recommendation and analysis for the synthetic biologists. CO-RAD allows users to edit circuits and protocols online while collaborating with other users in real-time. For assisting users in optimizing their circuits, we strengthen CO-RAD's ability of recommendation and analysis. After designing circuits in embedded design platform easily, users will get similar circuits from our interactive database by collaborative filtering algorithm. Users can also acquire various projects information efficiently through our search engine. Based on directed evolution algorithm, our software can simulate performance of circuits and provide suggestion of optimization. Moreover, some deep level information of circuit sequence can be showed in our software concisely.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>SZU-China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Manufacturing<br><b>Poster: </b>Zone 1 - #54 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room306 - 2:15 PM - 2:45 PM</p> <p><a href='https://2018.igem.org/Team:SZU-China'>Cockroach terminator</a></p> <p>This year we designed a fungal cockroach terminator system based on Metarhizium anisopliae. It can infect cockroaches in a very high efficiency and eventually lead to death. Our system consists of three parts. First, we use a hydrophobic protein called HsbA. It can help our fungus attach better to the cockroaches. Second, we transferred Bbchit which encodes the chitinase that can penetrate the surface of the cockroaches. After our transgenic Metarhizium anisopliae enter the hemolymph of cockroach. The third gene we transferred called MCL1 will combine with the specific antigen on the surface of Metarhizium anisopliae , which makes our system 'invisible' and can avoid the detection of the immune system. This allows our transgenic Metarhizium anisopliae to reproduce themselves greatly and eventually lead to cockroach's death. For better application we designed a device to contain our emulsifiable powder which we will definitely show you in giant jamboree.<p></div>
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<div class='column half_size'> <h2>Tacoma RAINmakers</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 1 - #44 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room207 - 12:00 PM - 12:30 PM</p> <p><a href='https://2018.igem.org/Team:Tacoma RAINmakers'>Ticket or Quit It: Protecting Families from Arsenic Contamination</a></p> <p>In Tacoma, Washington, arsenic pollution from the ASARCO copper smelter continues to devastate the surrounding communities' soil and water. Even small amounts of arsenic pose a threat to long-term community health, including cancer and developmental issues in children. The city and state have spent more than $62,000,000 over 18 years testing around 450 yards in the region, with efforts still underway. Our iGEM team seeks to change that paradigm by engineering an affordable and easy-to-use biosensor that utilizes chromoproteins made in the presence of bioavailable arsenic. Our biosensor is user-friendly by design and will not require hazardous chemical reagents. The Tacoma RAINMakers' goal is to improve community understanding of this local environmental issue and provide a low-cost tool that can be used by the citizens of Tacoma and communities worldwide to detect heavy metals.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Tartu TUIT</h2> <p> <b> Region: </b>Europe - Estonia<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 2 - #92 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room311 - 9:30 AM - 10:00 AM</p> <p><a href='https://2018.igem.org/Team:Tartu TUIT'>Eco-friendly sunscreen: MAAs+yeast extract</a></p> <p>Nowadays a great number of commercially produced sunscreens contain chemical compounds with a broad-spectrum ultraviolet coverage, such as oxybenzone and octinoxate, which are extremely toxic to the environment. Every year around 14,000 tons of sunscreen is washed into the oceans and seas, resulting in a dramatic increase of the toxicity level, causing a variety of pathologies to corals. Tatru_TUIT iGEM team will engineer S. cerevisiae to produce yeast extract enriched with biological sunscreen compounds Shinorine and Porphyra-334, both of which belong to Mycosporine-like Amino Acids (MAA). In order to produce MAAs, we will introduce 4 genes from cyanobacteria Nostoc commune KU002 (MysA, MysB, MysC, MysD) or Actinosynnema mirum DSM 43827(amir_4259, amir_4258, amir_4257, amir_4256) into yeast Saccharomyces cerevisiae. Our final product, which combines positive properties of both biological sunscreen compounds and yeast extract, could be further used in cosmetic products like creams, lotions, etc.<p></div>
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<div class='column half_size'> <h2>TAS Taipei</h2> <p> <b> Region: </b>Asia - Taiwan<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 1 - #36 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room309 - 4:15 PM - 4:45 PM</p> <p><a href='https://2018.igem.org/Team:TAS Taipei'>Say No to Glow: Reducing the carcinogenic effects of ALDH2 deficiency</a></p> <p>Turning red after consuming alcohol may seem like a mere social inconvenience. Yet, this flushing response is caused by an accumulation of acetaldehyde, a carcinogenic intermediate of alcohol metabolism. Acetaldehyde is broken down into harmless acetate by aldehyde dehydrogenase 2 (ALDH2). ALDH2 deficiency, the result of a point mutation in the ALDH2 gene, produces a much less efficient ALDH2 enzyme, leading to an accumulation of acetaldehyde and the subsequent flushing response. While about 8% of the global population is ALDH2 deficient, in our home, Taiwan, approximately 47% of the population carries this genetic mutation--the highest percentage in the world! Studies show that ALDH2 deficiency greatly increases the risk of developing esophageal and head and neck cancer. Thus, our project aims to produce recombinant ALDH2 to decrease levels of acetaldehyde in the upper digestive tract region. We envision delivery of ALDH2 as a purified protein or in consumer-friendly probiotics.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Tec-Chihuahua</h2> <p> <b> Region: </b>Latin America - Mexico<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Food & Nutrition<br><b>Poster: </b>Zone 2 - #102 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room207 - 9:00 AM - 9:30 AM</p> <p><a href='https://2018.igem.org/Team:Tec-Chihuahua'>Production of antimicrobial peptides in Escherichia coli for Paenibacillus larvae and Melissococcus plutonius inhibition</a></p> <p>American and European Foulbrood are diseases that affect bee (Apis mellifera) larvae worldwide. In the last two years, 53 countries suffered from these diseases, 6 of them are among the top 10 honey producers. The causal agents of these ailments are gram-positive bacteria: Paenibacillus larvae and Melissococcus plutonius respectively. Nowadays, two techniques for the treatment of Foulbrood are used: antibiotics and incineration of hives. The former promotes the development of antibiotic resistance in bacteria while the latter results unprofitable for beekeepers. Therefore, we propose the production of bee antimicrobial peptides (AMPs) in Escherichia coli to treat P. larvae and M. plutonius infections. Defensin 1, abaecin, defensin 2, and apidaecin are each expressed in a different BL21 (DE3) culture. PelB leader peptide and a 6X His-tag foster adequate expression and further purification. Through mathematical modeling, the diffusivity of PLGA-nanoencapsulated apidaecin is evaluated for future in vivo delivery in the bee system.<p></div>
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<div class='column half_size'> <h2>Tec-Monterrey</h2> <p> <b> Region: </b>Latin America - Mexico<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 2 - #133 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room207 - 11:30 AM - 12:00 PM</p> <p><a href='https://2018.igem.org/Team:Tec-Monterrey'>E.Coding</a></p> <p>CRISPR-Cas technology has the capability of storing information. This year, iGEM team Tec-Monterrey aims to use the CRISPR-Cas system to store specific DNA sequences in the genome of E. coli in order to save information about the environment surrounding the bacteria. To make this possible, Cas1-Cas2 proteins, which create the protospacer acquisition in the CRISPR system, are used to insert a synthetic DNA sequence in the CRISPR array within the genome of the bacteria. This synthetic sequence is produced by a second system, called SCRIBE. The final step of our project is reading out the inserted DNA sequence. Using specific primers for polymerase chain reaction (PCR) are used to amplify a section of the CRISPR array where the sequence is inserted. Taking together both systems, our project intends to act as a biological tape recorder capable of sensing external stimuli in the environment and storing their presence in the genome.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>TecCEM</h2> <p> <b> Region: </b>Latin America - Mexico<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 5 - #315 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room309 - 4:45 PM - 5:15 PM</p> <p><a href='https://2018.igem.org/Team:TecCEM'>Novel Treatment: Tissue regeneration in burns by recombinant proteins with nanodelivering on a MiniSkin Simulator</a></p> <p>The percentage of the mexican population that can afford a treatment for second degree burn injuries is low since they demand a large spend when treated. Representing the third cause of infant mortality in Mexico, it stands for an urgent issue to assess. This project approaches such problematique with the design of a multi-glycopeptide scaffold and the recombinant growth factor Leptin B to induce fibroblast proliferation. Nanoencapsulation was employed to ensure proper delivery and distribution. Growth measurements were evaluated through cell image analysis and lactate dehydrogenase activity as an indirect indicator, obtained from the culture medium in the MiniSkin Simulator, which is a hardware to test molecules in a 3D culture. This system could enhance tissue regeneration, minimizing infection risks and treatment lapses for affected patients with second degree burns.<p></div>
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<div class='column half_size'> <h2>TecMonterrey GDL</h2> <p> <b> Region: </b>Latin America - Mexico<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 2 - #90 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room306 - 9:30 AM - 10:00 AM</p> <p><a href='https://2018.igem.org/Team:TecMonterrey GDL'>Lactobachill: a smart psychobiotic with anxiolytic and antidepressant properties</a></p> <p>Around 300 million people suffer from depression and anxiety worldwide. Although there are several therapeutic strategies available, treatments targeting the gut-brain axis are gaining importance due to the strong relationship between alterations in the microbiota, systemic inflammation, and psychiatric disorders. Therefore, we aimed to develop a novel approach for the treatment and prevention of depression and anxiety. For this, we will genetically engineer a strain of Lactobacillus rhamnosus to detect increases in the levels of stress in the body. This psychobiotic, which we have termed 'Lactobachill', will secrete soluble receptors (i.e., sgp130 and a mutated variant of sgp80) that could selectively inhibit the aberrant trans-signaling pathway of the pro-inflammatory cytokine IL-6. We will also characterize the efficiency of secretion of these receptors, which will be coupled to bacterial signal peptides from Sec-dependent pathways. We envision that Lactobachill could be used as an adjunct to current treatments against anxiety and depression.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Thessaloniki</h2> <p> <b> Region: </b>Europe - Greece<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 2 - #165 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room311 - 9:30 AM - 10:00 AM</p> <p><a href='https://2018.igem.org/Team:Thessaloniki'>Galene: A genetic toolbox for controlled gene expression</a></p> <p>Biological systems are unpredictable, noisy and difficult to maintain stable even under standardized conditions, thus making controlled gene expression difficult. Combined with the fickleness and stochasticity associated with genetic circuitry, fluctuations in the production rate of a desired protein are inevitable. Through model-driven design, we engineer systems which guarantee constant gene expression, decoupled from gene/plasmid copy number, that can be induced to meet the desired expression level. We implement a Type I incoherent feedforward loop in E. coli cells to stabilize promoters using TAL Effectors, CRISPRi and cis-acting sRNA repressors that regulate a downstream attenuator. Furthermore, to render our system versatile, we introduce a theophylline riboswitch that allows on-the-fly control of stabilized protein production. We provide a foundational advance tool that enables fine tuning of complex metabolic pathways, functionality improvement of logic gates and suppression of fluctuations in gene expression.<p></div>
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<div class='column half_size'> <h2>Tianjin</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 4 - #259 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room306 - 3:15 PM - 3:45 PM</p> <p><a href='https://2018.igem.org/Team:Tianjin'>Life Tik Tok</a></p> <p>Organisms are adapted to the relentless cycles of day and night thanks to circadian clocks which regulate biological activities with ~24-hour rhythms. This year, we reconstruct KaiABC clock system in the bio-rhythm expression of yeast. This will not only perfect the experimental data of the template xenotransplantation, but also provide more reliable materials in regulating and exploring the oscillation. Correlated with the yeast two-hybrid technique, reporter genes help detect the results of our construction. To work as a powerful heterologous regulator, we investigate the regulatory mechanism of the clock through the systematic alteration of chromosome topology. And a novel application we envisioned was that S. cerevisiae can produce different products alternately under the periodic regulation day and night.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>TJU China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>New Application<br><b>Poster: </b>Zone 1 - #3 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room310 - 9:30 AM - 10:00 AM</p> <p><a href='https://2018.igem.org/Team:TJU China'>Booming CRISPRers</a></p> <p>This year, the CRISPR-Cas family is the protagonist in our story series. The old member, dCas9, is the enhancer for the heavy-metal detection based on E. coli, while the newbie, Cas12a, is a worker for the high-throughput cancer-related SNP detection chip. We have also built a 'highway' for tracking and delivering the Cas9/sgRNA complex in mammalian cells, and we try to apply it to manipulate the mitochondrial genome.<p></div>
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<div class='column half_size'> <h2>Tokyo Tech</h2> <p> <b> Region: </b>Asia - Japan<br><b>Section: </b>Undergraduate<br> <b>Track: </b>New Application<br><b>Poster: </b>Zone 2 - #158 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room312 - 2:15 PM - 2:45 PM</p> <p><a href='https://2018.igem.org/Team:Tokyo Tech'>Finding Flavi - Establishment of dengue virus serotype prediction and detection systems</a></p> <p>Dengue virus, which is in the flavivirus family, is a worldwide spread virus and has huge impact on society, however, not many developing countries are recognizing its danger. Dengue virus is unique in terms of its four different serotypes. Multiple infection can easily cause severe dengue, appearing hemorrhage and organ damage. It is important to grasp which serotype the patient is infected, however, there is not enough data about each serotype in a year. To tackle the situation, we succeeded in the development of the serotype prediction system using stochastic process analysis. This system can predict the patient's serotype by simulating the past data. We also developed the simple and fast testing kit that can detect serotype with fluorescence, so that we can check the patient easily and get enough data to estimate the patients' serotypes more accurate. In the future, this system can contribute to other flavivirus detection system.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Tongji China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 1 - #25 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room309 - 5:15 PM - 5:45 PM</p> <p><a href='https://2018.igem.org/Team:Tongji China'>Ocandy</a></p> <p>Neoantigens, which are the abnormal proteins produced by mutations in cancer cells that activate the immune system have already become the hotspots of concern to researchers. Neoantigen is Individualized and is a promising concept to be used in cancer treatment. Type III secretion system (T3SS) acts as a promising tool for protein delivery directly into the target cells. We establish a method which can deliver neoantigens into immune system using the Type III secretion system of Pseudomonas aeruginosa. We select the colorectal cancer as our target and use the bioinformatic method to filter our item antigens. Then we use the T3SS to deliver the item antigens into immune system through orally intake of engineered attenuated bacteria. Since for the T3SS, there are almost no restrictions on the delivery of short peptide antigens, this method has the flexibility to be adapted to, if there are effective neoantigens, any specific cancer patient.<p></div>
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<div class='column half_size'> <h2>Tongji-Software</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Software<br><b>Poster: </b>Zone 1 - #88 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room304 - 4:45 PM - 5:15 PM</p> <p><a href='https://2018.igem.org/Team:Tongji-Software'>Alpha Ant</a></p> <p>Advancements in metabolic engineering have enabled us to engineer enzymes and construct novel pathways for various applications including drug discovery and value-added biochemical production. However, it is hard to design and construct pathways with high efficiency and fidelity while balancing the metabolic burden of the microorganism.Thus,our project is to develop powerful and convenient web tool for synthetic biologists to design proper metabolic pathways while taking into account several criteria such as thermodynamic feasibility, material competition of heterologous reactions, atom conservation, toxicity of intermediates.We obtain data from several databases, including KEGG,BRENDA,MetaCyc and equilibrator.The core algorithm we use is depth-first search. Other than that, we have some additional functions for users, including organism recommandation and FBA. Alpha Ant means its capacity to find the most efficient metabolic pathway is just like the ant colony's intelligence of finding the most efficient path to a food source once it has been discovered by scouts.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Toronto</h2> <p> <b> Region: </b>North America - Canada<br><b>Section: </b>Undergraduate<br> <b>Track: </b>New Application<br><b>Poster: </b>Zone 3 - #191 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room310 - 2:15 PM - 2:45 PM</p> <p><a href='https://2018.igem.org/Team:Toronto'>Exploring biomass flotation as a viable separation technique for application in bioremediation processes</a></p> <p>Our project focuses on demonstrating flotation of Escherichia coli using gas vesicle proteins (GvPs) as a novel cellular separation technique for bioremediation processes. Previous iGEM teams have demonstrated gas vesicle production and flotation in mammalian and yeast cells using GvPs from various bacterial species. Shapiro et al., (2018) engineered a GvP-producing plasmid using arg1 from Aphanizomenon flos-aquae and Bacillus megaterium to synthesize these echogenic structures and observed that high expression enabled E. coli to float. Our goal is to replicate and improve their flotation results by modifying arg1 to achieve consistent flotation using a specific induction protocol. We propose that using this technique may be a cost-effective separation technique for various bioremediation processes. Upon sorption or uptake of pollutants or valuable materials, this technique could allow for simpler extraction of pollutant-harboring or heavy metal-bound bacteria. We have developed a bioreactor model to investigate this claim.<p></div>
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<div class='column half_size'> <h2>Toulouse-INSA-UPS</h2> <p> <b> Region: </b>Europe - France<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Manufacturing<br><b>Poster: </b>Zone 2 - #155 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room208 - 4:15 PM - 4:45 PM</p> <p><a href='https://2018.igem.org/Team:Toulouse-INSA-UPS'>Cerberus : Creating Endless Possibilities with Cellulose</a></p> <p>Cellulose is broadly used in medicine, textile and stationery. However, functionalising cellulose could lead to exciting innovative material developments such as conductive paper or self-disinfecting bandages. Here, we designed a versatile linker protein to enable the fixation of a wide range of organic and inorganic molecules on cellulose. Since the design is based on the fusion of three fixating protein heads, we named it Cerberus, like the mythological dog. The first head is a protein domain of the type 3 Carbohydrate Binding Module family to bind cellulose. The second is a streptavidin domain, with high affinity for biotinylated compounds. The last head features an unnatural amino acid, azidophenylalanine, allowing click chemistry to form covalent bonds. Each head has been assessed and cellulose with new functions has been produced. This work combines synthetic biology, chemistry and molecular modelling and paves the way to a revolution in our use of cellulose-sourced materials.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>TPHS San Diego</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 1 - #31 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room207 - 4:45 PM - 5:15 PM</p> <p><a href='https://2018.igem.org/Team:TPHS San Diego'>Chitinolytic Activity of Serratia Marcescens Chitinase in Response to Various Species of Pathological Fungi</a></p> <p>Fungi producing harmful mycotoxins flourish on various crops. Such fungal infections significantly reduce sustainability and food production in developing countries, where mycotoxin exposure from lack of advanced food storage are responsible for severe economic losses and 40% of diseases. Our team developed a modified enzyme chitinase capable of breaking down chitin cell walls. Specifically, Serratia Marcescens Chitinase works against multiple families of fungi. By GSTChiA Chitinase genes with a signal sequence from araC, we successfully generated an Escherichia coli line that secretes chitinase against Rhizoctoniasolani Solani, Alternaria raphani, and many other pathogenic fungi. Expression of GSTChiA was further quantified through analysis of chitin compounds. This project will provide an easily accessible method capable of combating major pathogens, saving crop yield and revenue.<p></div>
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<div class='column half_size'> <h2>Tsinghua</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Information Processing<br><b>Poster: </b>Zone 1 - #87 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room304 - 9:00 AM - 9:30 AM</p> <p><a href='https://2018.igem.org/Team:Tsinghua'>NEON Coli - Wide-dynamic-range, fine-tuned quorum sensing positive feedback circuit</a></p> <p>A major goal of synthetic biology is to design functional analog gene circuits that are capable of signal integration and processing. Our project presents an improved wide-dynamic-range positive feedback circuit based on bacterial quorum sensing system. Preexisting positive feedback circuits suffer from leakage problems, and to solve this we add a CRISPRi system to keep the positive feedback loop in check. This design allows us to execute fine control on signal transduction and protein expression, in our test ststem the expression of sfGFP. In order to make our project more presentable, we use this circuit to design a fluorescent bacteriograph that is able to change the picture, like a bacterial neon light. However this is not the extent of the circuit's usefulness, as it may lead to new applications in synthetic biological computations, and projects that require fine control of gene expression.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Tsinghua-A</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Diagnostics<br><b>Poster: </b>Zone 1 - #75 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room304 - 4:15 PM - 4:45 PM</p> <p><a href='https://2018.igem.org/Team:Tsinghua-A'>Allergy test master: the histamine receptor based whole - yeast sensor</a></p> <p>Histamine increases significantly in blood when allergy happens. So, we engineered the pheromone pathway in yeast to test histamine release in blood sample under one specific allergen per time. The pheromone receptor ste2 in original pathway is replaced by human Histamine receptor H3 or H4. In order to reinforce the coupling between H3/H4 and yeast G-protein, C-terminal of Œ± subunit of G-protein is modified by replacing several amino acids from the homologous protein in human. EGFP is set behind promoter Fus1 as the reporter gene. Many previous works support our modifications. Then the models of histamine and EGFP intensity relationship and the diagnosis credence can help to give the final result. Our special-designed integrated box can finish the blood collection, reaction and data sending process. Then the result will be calculated by our server and sent back to the smart phone. Thus, our project is available in families.<p></div>
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<div class='column half_size'> <h2>TU Darmstadt</h2> <p> <b> Region: </b>Europe - Germany<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Manufacturing<br><b>Poster: </b>Zone 5 - #292 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room208 - 5:15 PM - 5:45 PM</p> <p><a href='https://2018.igem.org/Team:TU Darmstadt'>Combimers</a></p> <p>Dependence on petrochemicals derived from oil and gas poses a major problem in the plastics industry and polymer production. Establishing biological precursors for high quality polymers is a hurdle we want to tackle. Poly(lactic-co-glycolic-acid), PLGA, is a copolymer used in a variety of biological applications due to its attractive properties: tailored biodegradation rate, biocompatibility, and a wide range of surface modifications for specialized utilization. The Food and Drug Administration (FDA) approves of PLGA derivates for clinical applications as surgical tools or nanoparticles in innovative drug delivery systems. Faster degradable copolymers, like poly(lactide-co-glycolide-co-caprolactone), PLGC, have similar properties and are attractive for pharmacokinetics of nanocapsule engineering. We set ourselves the goal to manufacture PLGA and PLGC in a sustainable, eco-friendly way. The required monomers will be produced by engineering of the Krebs cycle and other biological pathways in Saccharomyces cerevisiae and Escherichia coli.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>TU-Eindhoven</h2> <p> <b> Region: </b>Europe - Netherlands<br><b>Section: </b>Overgraduate<br> <b>Track: </b>New Application<br><b>Poster: </b>Zone 2 - #138 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room304 - 4:15 PM - 4:45 PM</p> <p><a href='https://2018.igem.org/Team:TU-Eindhoven'>GelCatraz: Where E. Coli goes to stay! A Novel platform for Living Materials.</a></p> <p>Living biomaterials are expected to revolutionize the field of medicine. This new class of devices, which incorporates biomaterials and harnesses the synthetic powers of living cells, would enable numerous applications ranging from replacement organs to personalized point-of-care medicine production. A major obstacle for the use of Living Biomaterials outside the lab is bacterial leakage, presenting both a technical issue and a safety risk. Our project aims to address this issue. We have engineered a strain of E. Coli to anchor itself into a novel dextran hydrogel by expressing an adhesive protein derived from arctic ice-binding bacteria. This platform would enable innumerable applications. As a proof of concept, we have designed a patch for chronic wounds in which anchored E. coli would secrete antimicrobial peptides to fight infections and reduce the need for systemic antibiotics and daily change of wound dressing – a painful procedure for many patients.<p></div>
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<div class='column half_size'> <h2>TUDelft</h2> <p> <b> Region: </b>Europe - Netherlands<br><b>Section: </b>Overgraduate<br> <b>Track: </b>New Application<br><b>Poster: </b>Zone 5 - #266 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room208 - 4:15 PM - 4:45 PM</p> <p><a href='https://2018.igem.org/Team:TUDelft'>Advanced Detection of Performance Enhancement (ADOPE): Detecting Gene Doping with Innovative Targeted Next Generation Sequencing</a></p> <p>TU Delft iGEM 2018 aims to prevent the abuse of synthetic biology in sports by developing a genetic doping detection methodology. Gene doping has been on the list of prohibited substances in sports since 2003, yet no method has been implemented to enforce this ban. Our project, Advanced Detection Of Performance Enhancement (ADOPE), aims to provide the proof-of-concept for an efficient, secure and versatile detection method. We have modelled the detection window; implemented a suitable sample preparation method from blood; developed a valid pre-screen based on gold nanoparticle technology and developed a unique and cutting edge targeted sequencing platform based on a novel dxCas9-Transposase fusion protein and nanopore sequencing technology. Finally, we have developed an algorithm that is able to group our sequencing outputs and indicates whether the athlete used gene doping. Continuous feedback from stakeholders has focussed and improved our project, making our method all the more complete.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Tuebingen</h2> <p> <b> Region: </b>Europe - Germany<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 1 - #4 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room302 - 4:15 PM - 4:45 PM</p> <p><a href='https://2018.igem.org/Team:Tuebingen'>BoNT C - Licence to enter</a></p> <p>In modern medicine treatment options involve many substances modified from natural sources, occasionally even toxins. We modify botulinum toxin in a way that leads to its detoxification. Thus, it can be coupled with a variety of other substances while not losing its specific shuttle mechanism for neuronal cells. In detail, we develop a library of different detoxified botulinum toxin derivatives which can accommodate other proteins, small molecules, and fluorochromes by specific linkers. To investigate the influence of the point mutations leading to detoxification in the active site, we conduct MD simulations. Since our shuttle mechanism could potentially be used in patients, we remove the most prevalent immune epitopes by a theoretical bioinformatics approach. Ultimately, our system is supposed to be utilized for therapy strategies and specific neuronal targeting in basic research. With our project we want to encourage future teams to think outside the box while keeping safety in mind.<p></div>
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<div class='column half_size'> <h2>Tufts</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Diagnostics<br><b>Poster: </b>Zone 2 - #123 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room208 - 10:00 AM - 10:30 AM</p> <p><a href='https://2018.igem.org/Team:Tufts'>Hypothetical System for Sensing miRNA with High Specificity and Signal Amplification</a></p> <p>miRNA is a small DNA regulatory molecule found in the bloodstream. More recently, its significance as a biomarker for various diseases and conditions from bone microfracture to various cancers has been discovered. These conditions are specifically correlated to certain sequences of miRNA, which is found in low concentrations (6-16CT PCR thresholds). To detect the miRNA with high specificity and amplification, our team proposed a system in which a complimentary toehold RNA would be created upstream of the RNA sequence for cas13a, a modified version of cas9 which would cut RNA randomly, triggering a fluorescent signal amplification when in the presence of RNAse detection kits.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>TUST China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 4 - #230 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room311 - 4:45 PM - 5:15 PM</p> <p><a href='https://2018.igem.org/Team:TUST China'>Tetracycline Detecting and Degradation ('T D&D')</a></p> <p>Tetracycline is a kind of antibiotic substance separated from the culture solution of Streptomyces aureofa-ciens, which belong to the common broad-spectrum antibiotic and have a great effect on many types of microorganism, this family including chlotetracycline、oxytetracycline and tetracycline.Last century, tetracycline is widely used in animal husbandry and aquaculture because of its competitive prices between with other antibiotics. As a result of this phenomenon,the pollution of tetracycline in water and soil is increasingly serious. This year, we want to construct a tetracycline detecting and degradation devices,"T D&D"system, to achieve our anticipation that sensitive detection and rapid degradation in the special devices through our constructive chasis. In our project, we would find a better ratio between detecting device and degradation device to the optimal result.<p></div>
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<div class='column half_size'> <h2>UAlberta</h2> <p> <b> Region: </b>North America - Canada<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Food & Nutrition<br><b>Poster: </b>Zone 5 - #285 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room312 - 4:15 PM - 4:45 PM</p> <p><a href='https://2018.igem.org/Team:UAlberta'>Developing an Antifungal Porphyrin-based Intervention System (APIS) to treat Nosema infections in honey bees</a></p> <p>Nosema ceranae is a microsporidian parasite which infects the European honey bee, Apis mellifera. Nosema infections cause energetic stress in bees and decreases their immune response. The detrimental effects of Nosema can lead to lower hive productivity, and ultimately colony failure. To counteract this infection, Team UAlberta designed an Antifungal Porphyrin-based Intervention System (APIS) to treat Nosema infections in honey bees. APIS uses a modified heme biosynthesis pathway in Escherichia coli to overproduce protoporphyrin IX (PPIX), the eighth intermediate in the pathway. When ingested, PPIX-like molecules have been shown to decrease N. ceranae spore load in infected bees. Re-introducing the heme pathway in E. coli controlled by an inducible promoter overproduces PPIX using existing cell machinery. APIS allows bypassing of mechanisms regulating the endogenous pathway. Our system allows for directly introducing the bacteria into bees, as well as the mass production of PPIX in bioreactors.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>UC Davis</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 3 - #171 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room310 - 3:15 PM - 3:45 PM</p> <p><a href='https://2018.igem.org/Team:UC Davis'>Cenozoic</a></p> <p>Our project aims to develop mammalian-based biosensors for use in the context of environmental toxicology. Specifically, out biosensors have been designed to co-opt the mammalian cell's intrinsic stress response pathways and use these to trigger the production of a fluorescent reporter. We hypothesize that a device reporting on the activation of cell stress pathways will provide more physiologically and health-relevant information about the potential toxins present in an environment than bioassays which seek to simply measure the compound presence and/or abundance. That is, our bioassay asks not whether a compound is there, but rather whether compounds exist that may pose a health hazard. Our biosensors use mammalian-derived promoters of genes known to be activated in response to stress-inducing environmental pollutants. These promoters are coupled to a reporter gene (eGFP) and used in in vitro assays to report on the presence of compounds that elicit cell stress.<p></div>
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<div class='column half_size'> <h2>UC San Diego</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Diagnostics<br><b>Poster: </b>Zone 4 - #258 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room304 - 12:00 PM - 12:30 PM</p> <p><a href='https://2018.igem.org/Team:UC San Diego'>Using unsupervised machine learning and synthetic biology to implement a novel, quantitative liquid biopsy test</a></p> <p>In order to address key bottlenecks in liquid biopsy and noninvasive cancer detection techniques, our team focused on using epigenetic determinants for diagnostic purposes. Presented here is a novel workflow for diagnosing cancer by using promoter methylation as an indicator of interest. Key promoter regions of interest are first identified via unsupervised machine learning applied to the Cancer Genome Atlas via our in silico predictive tool. After this, our specially-designed assay can detect the presence of these hypermethylated regions of interest and provide a quantitative, fluorescent readout in order to generate clinical insight. Special advances in material science and microfluidics are then used to enhance the sensitivity and specificity of our assay. The workflow is then completed via integration into a smartphone application that provides the necessary data and helps streamline doctor-patient communication. Our proof of concept was centered around hepatocellular carcinoma.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>UCAS-China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Open<br><b>Poster: </b>Zone 2 - #111 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room312 - 3:15 PM - 3:45 PM</p> <p><a href='https://2018.igem.org/Team:UCAS-China'>Rose Forest</a></p> <p>A hundred years ago, a nightingale built a red rose for true love out of music by moonlight. Today, our E. coli uses light and music to create a colorful and fragrant rose forest for scientists and artists. Using three sensors to sense light of different wavelengths and intensity, and a RNAP system as resource allocator, our E. coli produces different proportions of three-primary colors responding to light and music, realizing the painting of full-color roses. By changing the output into scent genes, our roses can even emit various sorts of pleasant odors. Besides,we plan to make a collection kit to collect important genes related to light control and the color output of E. coli, which will be more convenient for future researchers. Integrating idealistic human feelings with logical genetic circuits, we aim to bring forth a new perception of combining art and science.<p></div>
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<div class='column half_size'> <h2>UChicago</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>New Application<br><b>Poster: </b>Zone 2 - #91 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room310 - 9:00 AM - 9:30 AM</p> <p><a href='https://2018.igem.org/Team:UChicago'>An iGEM-Optimized CEN Plasmid for E. coli and Pichia pastoris</a></p> <p>Komatgella pastoris, otherwise known as Pichia pastoris, serves as an important industrial chasis organism for its ease of cultivation while also making post transcriptional modifications to eukaryotic proteins. Expensive and complex techniques, such as in vivo recombination, however remain a major bottleneck to developing transgenic P. pastoris lines. Centromeric plasmids developed for Saccharomyces cerevisiae overcome this bottleneck by providing the flexibility of plasmids with the stability of endogenous chromosomes. Here, we adapt the pSB1C3 iGEM backbone with a P. pastoris selection marker and various portions of the P. pastoris centromeric sequences to develop centromeric plasmids. We demonstrate by sectoring assay that these plasmids provide chromosome-like stability while maintaining the ease of use of an iGEM plasmid. This plasmid has major implications in the manufacturing of biologics.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>UChile Biotec</h2> <p> <b> Region: </b>Latin America - Chile<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 2 - #104 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room309 - 11:00 AM - 11:30 AM</p> <p><a href='https://2018.igem.org/Team:UChile Biotec'>Tenzyme Vilu - Aptazymes for biosensing marine toxins.</a></p> <p>Last year during BiMaToX project we developed a novel biosensor based in aptazymes in order to detect paralytic toxins (saxitoxin) produced during harmful algal blooms (HAB). Tenzyme Vilu project will expand this goal to design a platform to obtain functional aptazymes for biosensing other marine toxins. For this, we have fully characterized adenosine monophosphate (AMP) aptazyme to further investigate aptazymes molecules as a diagnostic platform for other marine toxins. In order to improve the affinity of the aptazymes with its respective ligand, we have tested alternative sequences by using a rational design to avoid false negative or positive detections that can eventually arise when analysing raw samples. Then, by using our approach we developed novel aptazymes for sensing different HAB toxins, such as paralytic, diarrheic and amnesic shellfish toxins. Finally, a cell-free cellulose matrix device with different lyophilized aptazyme will be tested to evaluate the presence of different marine toxins.<p></div>
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<div class='column half_size'> <h2>UCL</h2> <p> <b> Region: </b>Europe - United Kingdom<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Manufacturing<br><b>Poster: </b>Zone 2 - #136 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room208 - 12:00 PM - 12:30 PM</p> <p><a href='https://2018.igem.org/Team:UCL'>SETA - Silk Engineered Technology & Applications</a></p> <p>Revolutions in synthetic biology are driven by effective and universal standardisations, which the biomaterial industry has not had… yet. Inspired by the idea of engineering modularity, we investigated an innovative technology that allows for more efficient and high-throughput manufacturing of environmentally-friendly biomaterials. We devised a plug-and-play framework using intein splicing to aid in both the polymerisation and functionalisation of biomaterials with a range of applications. Due to its durability, biodegradability, and kevlar-like strength, we opted for spider silk as a model to test our proposed system. While developing our platform, we conceived a BioBrick-compatible standard with improved flexibility that enables the integration of conventional cloning methods into iGEM’s workflow. Our split-intein system provides the manufacturing industry a modular and accessible polymerisation approach that can foster the next generation of biomaterials.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>UCLouvain</h2> <p> <b> Region: </b>Europe - Belgium<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 3 - #211 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room207 - 2:15 PM - 2:45 PM</p> <p><a href='https://2018.igem.org/Team:UCLouvain'>No title</a></p> <p>No abstract<p></div>
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<div class='column half_size'> <h2>UConn</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Manufacturing<br><b>Poster: </b>Zone 2 - #125 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room306 - 3:15 PM - 3:45 PM</p> <p><a href='https://2018.igem.org/Team:UConn'>Biological Alkane Synthesis through Shuttled Electron Transport</a></p> <p>BASSET aims to engineer E. coli to produce biofuel (short-chained alkanes) in a microbial electrosynthesis (MES) system. For this year, BASSET produces alkanes from fatty acyl-ACPs. This aim is achieved by heterologous expression of Pmt1231 (from Prochlorococcus marinus) and Acr (from Clostridium acetobutylicum), overexpression of the endogenous FadK and a mutant TesA. The engineered organism is tailored for future use in a MES. In the MES, E. coli will accept electrons from an external source (for example, off-peak excess of solar energy). This energy will power the biosynthesis pathway by producing reducing equivalents such as NADH or NADPH in the cell.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>UCopenhagen</h2> <p> <b> Region: </b>Europe - Denmark<br><b>Section: </b>Overgraduate<br> <b>Track: </b>New Application<br><b>Poster: </b>Zone 5 - #279 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room306 - 4:15 PM - 4:45 PM</p> <p><a href='https://2018.igem.org/Team:UCopenhagen'>PharMARSy: A novel system combining protein production and purification - keeping astronauts on mars healthy</a></p> <p>Long-term space travel and colonization of Mars will require on-site production of pharmaceutical proteins to treat diseases, but current methods require expensive and bulky equipment. PharMARSy will develop a novel portable system that combines protein production and purification in a single step. To achieve this, we will hijack the bacterial type-3-secretion system (T3SS) that injects signal-tagged proteins through cell membranes. By constructing a device with two chambers separated by a membrane we direct our T3SS-bearing bacteria to inject target-proteins through the membrane and into a collection chamber. This method will separate the pure recombinant protein from the producing organism, facilitating purification. We will establish proof-of-concept using membranes in the form of liposomes, lipid-bilayers, onion cells and egg yolk. Furthermore, the two-chambered device will be 3D-printed. Our project will be developed further by integrating feedback from experts in space exploration, pharmaceuticals and bio-safety.<p></div>
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<div class='column half_size'> <h2>UCSC</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Manufacturing<br><b>Poster: </b>Zone 5 - #313 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room309 - 9:00 AM - 9:30 AM</p> <p><a href='https://2018.igem.org/Team:UCSC'>Portable Progesterone Production in Yeast (PoPPY)</a></p> <p>Women around the world lack adequate access to safe and affordable methods of contraception. The University of California, Santa Cruz (UCSC) iGEM team will create a safe, sustainable, and cheap progesterone-based contraceptive for all women, regardless of location or status. We will engineer the yeast Yarrowia lipolytica (Yali) to synthesize progesterone. Yali naturally produces a progesterone precursor, ergosterol. We will add five genes to the yeast genome to induce steroid hormone production by completing the progesterone biosynthesis pathway. We will insert these genes into Yali via three parallel experiments: Gibson cloning followed by homologous recombination, yeast-mediated cloning in Saccharomyces cerevisiae followed by Cre-lox recombination into Yali, and yeast-mediated cloning followed by Cre-lox into Yali. Following these experiments, we will monitor progesterone production to determine a safe, effective contraceptive dosage. On proper growth media, our self-replicating yeast biofactory will produce progesterone and provide a sustainable source of contraception.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>UESTC-China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Energy<br><b>Poster: </b>Zone 5 - #309 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room311 - 11:30 AM - 12:00 PM</p> <p><a href='https://2018.igem.org/Team:UESTC-China'>Straw-Degrading Energy E.coli</a></p> <p>With the development of agriculture, the yield of straw is huge, and it grows rapidly around the world every year. However, due to the complex structure of straw, current physical and chemical methods not only consume a lot of energy, but also create potential air pollution problems, while existing biological methods still require pretreatment by chemicals. Therefore, how to use straw effectively has become a problem we need to consider. Fortunately, we have found a bifunctional enzyme, xyn10D-fae1A from a paper, which directly decomposes straw and converts it into useful chemical raw materials – cellulose, lignin, ferulic acid and xylose. In addition, considering the energy shortage, we also convert cellulose to butanol and hydrogen to make more efficient use of cellulose.<p></div>
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<div class='column half_size'> <h2>UESTC-Software</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Software<br><b>Poster: </b>Zone 3 - #176 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room311 - 4:15 PM - 4:45 PM</p> <p><a href='https://2018.igem.org/Team:UESTC-Software'>BioMaster: An integrated bio-brick database</a></p> <p>BioMaster is an integrated bio-brick database with the function of promoter prediction. We improved and standardized the information of bio-bricks in iGEM Registry by integrating information in databases like Uniprot, Epd, GO, etc. So BioMaster provides more comprehensive information about bio-bricks, including their functions, sites, interactions and references. With these, bio-bricks could be used and designed in a more reasonable way. Meanwhile, BioMaster offers more user-friendly searching methods. In addition, we provided a promoter prediction tool based on machine learning, in which promoter sequences can be found in unlabeled gene sequences. Via this tool, a promoter database predicted from E. coli genome was constructed, it contains a quantity of promoter sequences and information about the gene to which the sequences belong. We believe that this brand-new bio-brick database, BioMaster, can provide more conveniences for synthetic biologists.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>UFlorida</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Food & Nutrition<br><b>Poster: </b>Zone 4 - #257 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room312 - 4:45 PM - 5:15 PM</p> <p><a href='https://2018.igem.org/Team:UFlorida'>Engineering Probiotic Escherichia Coli Nissle 1917 for Buytrate Production</a></p> <p>Escherichia coli 1917 is a clinically approved therapy for various forms of inflammatory bowel disease. In order to apply synthetic biology approaches to potentially augment the probiotic and therapeutic potential of this bacterial strain, we decided to introduce a heterologous butyrate producing pathway into the bacteria. We decided to delete several genome genes involved in producing metabolites that drain carbon and reducing equivalents from theoretical butyrate production in a redox - balanced manner. Then, we synthesized two gblocks in order to assemble them together to form a biobrick encoding 5 enzymes involved in butyrate production. We also tested the function of past iGEM teams that have unsuccessfully attempted to produce butyrate. Our approach to metabolic engineering of E. Coli Nissle 1917 involved both genome editing and biobrick assembly, both of which are necessary to turn this strain into a therapuetic butyrate cell factory in the gut.<p></div>
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<div class='column half_size'> <h2>UGA</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Food & Nutrition<br><b>Poster: </b>Zone 5 - #310 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room310 - 12:00 PM - 12:30 PM</p> <p><a href='https://2018.igem.org/Team:UGA'>Development of Gal4/UAS Reporter Systems for use in Plants</a></p> <p>The development of inducible expression systems in plants is imperative to the field of synthetic biology. The University of Georgia's 2018 iGEM team is expanding the iGEM registry's profile of plant promoters and reporters. Here we report a modified Gal4/UAS system. The Gal4/UAS system is an inducible promoter system native to yeast that utilizes the Gal4 transcription factor to activate genes downstream of a minimal promoter enhanced by an upstream activator sequence (UAS). We have created a 6X UAS repeat combined with a minimal 35S promoter to provide enhanced expression of reporter genes such as GFP, AmilC, and the apoptotic initiator from bell peppers, BS3, in the model organism, Nicotiana Benthamiana. The introduction of these expression systems to the iGEM registry will enable future iGEM teams to produce targeted expression in plants with ease using a binary vector system.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>UI Indonesia</h2> <p> <b> Region: </b>Asia - Indonesia<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Diagnostics<br><b>Poster: </b>Zone 2 - #134 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room309 - 11:30 AM - 12:00 PM</p> <p><a href='https://2018.igem.org/Team:UI Indonesia'>Finding Diphthy: Utilization of LuxAB-eYFP Resonance Energy Transfer System to Detect Diphtheria Toxin</a></p> <p>Diphtheria is an infection caused by Corynebacterium diphtheriae, marked by pseudomembrane in posterior pharynx, potentially leading to respiratory tract occlusion and death. Recently, there has been diphtheria outbreak affecting major provinces in Indonesia. We realize the urgency of fast, reliable, and cheap early detection method for diphtheria infection to overcome this issue. Therefore, we plan to combine Escherichia coli Tar chemotaxis receptor with human heparin-binding EGF-like growth factor (HB-EGF) receptor so the bacteria can detect diphtheria toxin. In addition, we will combine CheA and CheY in E. coli chemotaxis pathway with LuxAB and eYFP, respectively. When in contact, LuxAB and eYFP will create resonance energy transfer system. Without diphtheria toxin, CheA will interact with CheY and thus LuxAB-eYFP energy resonance will happen, resulting in yellow color. With toxin presence, CheA will not interact with CheY and energy resonance will not happen, resulting in blue color (i.e. LuxAB native color).<p></div>
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<div class='column half_size'> <h2>UiOslo Norway</h2> <p> <b> Region: </b>Europe - Norway<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Diagnostics<br><b>Poster: </b>Zone 1 - #43 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room208 - 9:00 AM - 9:30 AM</p> <p><a href='https://2018.igem.org/Team:UiOslo Norway'>Canditect - Fast detection of vulvovaginal Candida albicans using CRISPR/dCas9</a></p> <p>During their lifetime 75% of women will experience a Candida albicans infection, one of the most common vulvovaginal yeast infections. Currently there are no fast methods to detect whether an infection is caused by C. albicans. As a result, women purchase over-the-counter antimycotics without knowing the cause of their infection. This contributes to the rise of antimycotic resistance, making treatment of future infections more difficult. Based on previous projects, UiOslo_Norway aims to develop a fast detection kit for C. albicans infections, using CRISPR/dCas9. Upon a suspected infection, a vaginal sample will be treated with glucanase to selectively lyse yeast cells walls, exposing the fungal DNA. Afterwards, modified dCas9 enzymes fused with split Œ≤-lactamase are added. Using specifically designed guideRNAs, the dCas9 complexes bind adjacently on C. albicans specific DNA sequences. This activates the Œ≤-lactamase to cleave its substrate nitrocefin, producing a colored product indicating the presence of C. albicans DNA.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>UIOWA</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Manufacturing<br><b>Poster: </b>Zone 1 - #35 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room306 - 11:30 AM - 12:00 PM</p> <p><a href='https://2018.igem.org/Team:UIOWA'>Investigating biosensors for the industrial production of 3-hydroxypropionic acid</a></p> <p>Many industrial manufacturing processes revolve around the molecule 3-hydroxypropionic acid (3HP). This organic molecule can be used in a variety of industrial products, from biofuels to bioplastic production. While much research is focusing on maximizing the production of this important molecule, our team belongs to a smaller subset focused on finding ways to sense and measure its production. In a recent study, genes from the bacteria Pseudomonas putida were incorporated into Escherichia coli and demonstrated that re-purposed regulatory proteins from P. putida could be used as a biosensor for 3HP (Hanko et al. 2017). A separate study identified similar 3HP responsive genes in Pseudomonas denitrificans (Zhou et al. 2015). Our research team has transformed a promoter-regulator system that recognizes 3HP into Bacillus subtilis. B. subtilis is a hardy bacterium that has great potential as a 3HP producer for industrial processes and metabolic engineering experiments.<p></div>
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<div class='column half_size'> <h2>UIUC Illinois</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Energy<br><b>Poster: </b>Zone 3 - #207 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room311 - 11:00 AM - 11:30 AM</p> <p><a href='https://2018.igem.org/Team:UIUC Illinois'>Symbiosis of Lactococcus lactis and Saccharomyces cerevisiae</a></p> <p>We are exploring symbiotic co-culture of Lactococcus lactis, a lactic acid bacteria (LAB), and Saccharomyces cerevisiae, brewer's yeast, as a means to naturally produce lactic acid. This precursor is valuable for the synthesis of poly-lactic acid, a widely used biodegradable plastic. In many food and beverage industries, LAB is a common contaminant of yeast. This suggests that yeast and LAB form a complex microbiome where both species act in symbiosis. Studying the symbiotic relationship between yeast and LAB could increase carbon flux to the production of lactic acid. Co-culture dynamics have not been thoroughly studied, as a result, we obtained bacterial and yeast fluorescence reporter strains and performed a systematic analysis of co-culture dynamics, including optimization of media characteristics and ratios of initial cell numbers. We concluded the ideal co-culture media is a mixture of 1X YPD and 1X M17 media supplemented with 2% glucose.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>ULaval</h2> <p> <b> Region: </b>North America - Canada<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Manufacturing<br><b>Poster: </b>Zone 5 - #268 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room311 - 4:15 PM - 4:45 PM</p> <p><a href='https://2018.igem.org/Team:ULaval'>Adrenayeast: Eco-Innovative Biosynthesis of Adrenaline in Saccharomyces cerevisiae</a></p> <p>Adrenaline is an essential medication used to treat several conditions, including life-threatening anaphylactic reactions. However, the current chemical manufacturing processes struggle to keep up with the demand for adrenaline, often leading to shortages of potentially life-saving medicine. Our project aims to increase the molecule's availability by providing an eco-innovative alternative with milder operational conditions. We designed a two-plasmid system which harbors synthetic human cDNAs encoding the adrenaline enzymatic pathway. We explored how the insertion of this plasmid system into a Saccharomyces cerevisiae strain engineered to overproduce L-tyrosine can be used for the biosynthesis of adrenaline. As the enzymatic pathway also produces metabolic intermediates of biomedical interest, we intend to create three strains of Saccharomyces cerevisiae producing dopamine, noradrenaline or adrenaline, based on plasmid combination. Along with an optimized protocol to harvest purified products, we present our exploration of the social and ethical impacts of using this process to mass-produce adrenaline.<p></div>
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<div class='column half_size'> <h2>ULaVerne Collab</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 3 - #177 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room208 - 12:00 PM - 12:30 PM</p> <p><a href='https://2018.igem.org/Team:ULaVerne Collab'>A Bio-Solution to Plastic Pollution!</a></p> <p>Every year, 8 million tons of plastic enter the ocean and can devastate the ocean's ecosystem. Many of these plastics are broken down into very small pieces called microfibers which are more harmful because they can be consumed by many organisms and negatively affect their health. Although the exact path from land to ocean is still unclear, we aim to remove the plastics from the wastewater level where plastic particles are known to accumulate. To eliminate these plastic particles from wastewater, we tested modified PETase enzyme that contains a unique catalytic site. To model our system, we aim to use a zero-energy requiring RAM pump design to hold our microbes and properly circulate the plastics and degrade them so plastic-free water can be released from the treatment plants and into the environment without any harm coming to the aquatic ecosystems.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>UMaryland</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 1 - #40 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room302 - 4:45 PM - 5:15 PM</p> <p><a href='https://2018.igem.org/Team:UMaryland'>PETNET: A scalable solution for plastic bioremediation</a></p> <p>Explosive worldwide increase in plastic production has led to extensive pollution from polyethylene terephthalate (PET) despite ambitious recycling efforts. PETNET uses several advances to address this issue. The recently discovered PETase from Ideonella sakaiensis is attached to a cellulose binding domain to increase PET degrading potential. The degrading efficiency of this protein is amplified with the integrated hardware featuring a cellulose-lined, modular flow reactor. The enzymatic activity of PETase is accelerated when immobilized near flowing PET substrate via interaction of linked CBD with the reactor's cellulose scaffold, allowing for feasible real-time PET degradation. Quantitation of PET degradation is accomplished with an evolved protocatechuate biosensor sensitive to micromolar concentrations of PET degradation byproduct. This approach circumvents the need for expensive instrumentation for the downstream detection of PET degradation. PETNET is a comprehensive approach to PET degradation that will offer a scalable platform for society to address the overwhelming accumulation of plastic.<p></div>
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<div class='column half_size'> <h2>UMass Dartmouth</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 1 - #63 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room207 - 11:00 AM - 11:30 AM</p> <p><a href='https://2018.igem.org/Team:UMass Dartmouth'>No title</a></p> <p>No abstract<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>UNebraska-Lincoln</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 3 - #200 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room208 - 2:45 PM - 3:15 PM</p> <p><a href='https://2018.igem.org/Team:UNebraska-Lincoln'>Improving Early Detection of the Emerald Ash Borer</a></p> <p>The emerald ash borer, Agrilus planipennis, is an invasive species native to Asia that first appeared in the United States in 2002. It has since spread to four Canadian provinces and thirty-five U.S. states, including Nebraska. The infestation is currently monitored with detection traps baited with the green leaf volatile (Z)-3-hexenol, which has been documented as an unreliable lure. The more effective bait, Phoebe oil and its most bioactive constituent 7-epi-sesquithujene, are commercially unavailable. Our team seeks to meet this challenge by building a bacterial cell factory to synthesize 7-epi-sesquithujene. We first introduced the mevalonate-dependent pathway into E. coli to enable the accumulation of the key biosynthetic precursor, farnesyl pyrophosphate. The maize terpene synthase gene tps4-B73 was then expressed in the engineered host. Accumulation of the target molecule by the constructed strain was confirmed by gas chromatography-mass spectrometry analysis. Future research will focus on product quantification and purification.<p></div>
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<div class='column half_size'> <h2>Unesp Brazil</h2> <p> <b> Region: </b>Latin America - Brazil<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 5 - #264 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room302 - 11:30 AM - 12:00 PM</p> <p><a href='https://2018.igem.org/Team:Unesp Brazil'>Hope: a framework to engineer living therapeutics</a></p> <p>Treatment of metabolic disorders often relies on pills and uncomfortable injections. Genetically engineered probiotics have the power to revolutionize drug delivery in a non-invasive way, by acting as living therapeutics in the human gut. To take this novel approach to its fullest potential, we designed a robust framework to engineer living therapeutics. Our framework provides an interchangeable and adaptable system to secrete and deliver a therapeutic polypeptide in response to an environmental signal, and a light-responsive biocontainment module based on the CRISPR/Cas9 machinery. Moreover, we designed and constructed a low-cost bioreactor system to simulate the human gut microbiome and validate our engineered probiotic. As proof of concept, we engineered a probiotic to treat type 1 diabetes that secretes insulin in response to glucose. Our framework aims to offer an easy, modular, robust and open-source solution to engineer and validate designer probiotics, bringing new hope to patients suffering from metabolic disorders.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>UNSW Australia</h2> <p> <b> Region: </b>Asia - Australia<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 1 - #73 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room306 - 2:15 PM - 2:45 PM</p> <p><a href='https://2018.igem.org/Team:UNSW Australia'>Covalent attachment of enzymes to a self-assembling protein scaffold for substrate channelling</a></p> <p>Metabolic engineering aims to produce complex high-value compounds for industry from simpler and cheaper substrates by enhancing rates of reaction. The rates of metabolic reactions can be greatly enhanced by substrate channelling, which spatially brings together the enzymes of a multi-step reaction, increasing the effective concentration of metabolic intermediates. We have designed a novel protein scaffold that specifically and covalently co-localises enzymes in a modular system. Our 'Assemblase' system consists of a heterohexameric complex of a highly thermostable and chemical resistant archaeal protein, prefoldin, which has been engineered to recruit enzymes using covalent protein-protein interactions. The design is being tested with a two step enzyme pathway to produce the horticultural plant hormone, indole 3-acetic acid, from tryptophan. We propose that the Assemblase system could be used for accelerating the production of pharmaceuticals and industrial chemicals, bioremediation and as a foundational research tool.<p></div>
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<div class='column half_size'> <h2>UofGuelph</h2> <p> <b> Region: </b>North America - Canada<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Food & Nutrition<br><b>Poster: </b>Zone 2 - #161 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room312 - 9:30 AM - 10:00 AM</p> <p><a href='https://2018.igem.org/Team:UofGuelph'>E. coli- and S. cerevisiae-Mediated Breakdown and Prevention of Beerstone via FRC, OXC and OxIT</a></p> <p>Beerstone is calcium oxalate buildup that forms as a byproduct inside beer brewing equipment. Beerstone's high insolubility results in the need for highly corrosive chemicals such as nitric and phosphoric acids, combined with intense physical scrubbing for its removal. Oxalobacter formigenes is a human gut bacterium which solely metabolizes oxalate using enzymes Formyl-Coenzyme A Transferase (FRC) and Oxalyl-Coenzyme A Decarboxylase (OXC). Oxalate is taken into the cell by an oxalate-formate antiporter (OxIT), and following its metabolism, formate is exported from the cell by OxIT. We have investigated engineering E. coli and S. cerevisiae with these genes in order to characterize their activity and feasibility for use in an industrial setting. Tests included heterologous production of FRC and OXC in E. coli to characterize their activity against calcium oxalate, and modifying S. cerevisiae to utilize calcium oxalate using OxIT, FRC and OXC during the brewing process to prevent beerstone buildup.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>UPF CRG Barcelona</h2> <p> <b> Region: </b>Europe - Spain<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 4 - #223 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room309 - 10:00 AM - 10:30 AM</p> <p><a href='https://2018.igem.org/Team:UPF CRG Barcelona'>Probiotics to fight metastasis: Engineering E. coli to regulate fatty acid metabolism</a></p> <p>Prevention of metastasis remains a challenge for modern medicine. Recent experimental evidences indicate that metastasis development correlates directly on dietary long chain fatty acids (LCFA) intake, such as palmitic acid (PA). Hence, targeting fatty acid availability in the intestine could prevent cancer cells from spreading. Here a safe, effective and affordable solution is proposed by the design of a probiotic with increased LCFA uptake, GARGANTUA. We approached this by modulating the beta-oxidation family genes in E. coli. Moreover, we developed the first LCFA intracellular biosensor that does not interfere with its metabolism. This will provide a tool able to characterize LCFA uptake. We also developed a framework for the genomic integration of the uptake machinery, as a way to increase safety and robustness of our device. GARGANTUA provides a proof of concept for an alternative approach for metastasis prevention with potential applications in metabolic disease treatment.<p></div>
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<div class='column half_size'> <h2>Uppsala</h2> <p> <b> Region: </b>Europe - Sweden<br><b>Section: </b>Overgraduate<br> <b>Track: </b>New Application<br><b>Poster: </b>Zone 2 - #148 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room208 - 4:45 PM - 5:15 PM</p> <p><a href='https://2018.igem.org/Team:Uppsala'>Worm Busters - Fighting the hidden resistance</a></p> <p>This year iGEM Uppsala has applied modern methods in novel ways to solve problems in a field largely untouched by synthetic biology. The purpose of the project is to use applied diagnostics to prevent overutilization of anthelmintics in horses by engineering a 'smart' bacterium. These bacteria would be able to report the presence of specific nematode parasites in a quantitative manner, allowing deworming treatments to be individualized for each horse depending on the level of infection. This would minimize the risk of future anthelmintic resistance, helping to stem the impending problem. Using synthetic biology to solve problems in veterinary diagnostics has presented many unique challenges to our team. These challenges have been overcome by development of new applications of existing techniques such as phage display, transcriptome sequencing using nanopore technology, and chromoprotein expression.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>US AFRL CarrollHS</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 3 - #199 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room302 - 11:00 AM - 11:30 AM</p> <p><a href='https://2018.igem.org/Team:US AFRL CarrollHS'>Engineering E.coli to detect and destroy biofilms</a></p> <p>With growing environmental concerns, industries are increasingly relying on biofuels. Biodiesel storage tanks are susceptible to water infiltration that often results in biofilm formation containing bacteria and fungi. Biofilms may clog pipes, degrade fuel, or corrode storage tanks. We set out to engineer a 'seek, aim, and destroy' system for the remediation of microbial biofilms. Pseudomonas aeruginosa, commonly found in fuel biofilms, releases the quorum sensing molecule C4-HSL. Our engineered E. coli cells express CheZ protein in response to a concentration gradient of C4-HSL to activate the flagella motors and propel the cells towards the biofilm. In addition, the engineered E. coli expresses chitinase on its surface and secretes cinnamaldehyde. Chitinase breaks down chitin in the fungal cell walls, increasing the ability of cinnamaldehyde to destroy the fungi. Cinnamaldehyde also eliminates bacteria, thus remediating the biofilm. (DISTRIBUTION A: Approved for public release; distribution unlimited. 88ABW-2018-3904. 01 August 2018.)<p></div>
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<div class='column half_size'> <h2>USAFA</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 4 - #245 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room208 - 2:45 PM - 3:15 PM</p> <p><a href='https://2018.igem.org/Team:USAFA'>Ops Normal: a novel protein sequestration sequence to prevent a phenotypic switch in Candida albicans</a></p> <p>Candida albicans is a fungus that, despite being considered part of normal human flora, has the potential to cause life-threatening systemic infections, with candida infections being the fourth leading cause of hospital acquired systemic infections and resulting in mortality rates of up to 50%. Candida albicans becomes pathogenic after a phenotype switch from white-to-opaque or opaque-to-white, depending on the infection site. Here, we cloned the 5' UTR of the master white-opaque phenotypic regulator WOR1 into a vector to act as a protein sequestration sequence. To confirm successful cloning of the 5' UTR and expression of our vector, we used E. coli as our model organism. Once integrated into the Candida albicans genome, our genetically engineered part should sequester transcriptional regulating proteins away from the WOR1 gene and alter the phenotypic switching tied to the pathogenicity of Candida albicans.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>USMA-West Point</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Manufacturing<br><b>Poster: </b>Zone 3 - #206 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room312 - 11:00 AM - 11:30 AM</p> <p><a href='https://2018.igem.org/Team:USMA-West Point'>Developing bacterial mammalian olfactory system-based chemical biosensors</a></p> <p>Artificial bio-sensors based on the mammalian olfactory system are potentially powerful chemical analytical systems for many industrial, medical and security applications. The ability to express mammalian proteins make bacteria a potentially powerful platform for developing artificial chemical biosensors. Bacteria, however, lack several of the intracellular signaling proteins required to alter cell membrane field potential changes in response to odorant binding. To overcome this challenge, we have developed a plasmid containing a synthetic bacterial operon that enables the expression of multiple genes under the control of the upstream regulatory promoter for the AraC gene. In this proof-of-principle system, synthetic operon will be expressed in E.coli with a separate plasmid that co-expresses a human odorant receptor protein. These studies will provide the foundation for future work to develop synthetic operons can be used to heterologously express the multiple proteins required to develop bacterial chemical biosensors based on the mammalian olfactory system.<p></div>
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<div class='column half_size'> <h2>USP-Brazil</h2> <p> <b> Region: </b>Latin America - Brazil<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 3 - #194 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room310 - 5:15 PM - 5:45 PM</p> <p><a href='https://2018.igem.org/Team:USP-Brazil'>QS-Comms</a></p> <p>Quorum sensing is a mechanism for communication within and between bacterial populations, and it presents interesting possibilities for biotechnology in controlling populational behavior, ranging from task division in bioprocesses to biofilm disruption in infections. However, to generate complex patterns in a predictable manner, orthogonality between different quorum sensing pathways is essential, so the toolkit of quorum sensing parts needs to be thoroughly characterized, expanded and optimized so that this technology may see its full potential. Thus, our project aims to characterize activity and quantify the genetic crosstalk between a variety of quorum sensing systems that showed promising activity in prior works, while also using this information to predict, model and ultimately aid possible design applications and solutions for microbial communication. This way we will build on a growing bank of data of quorum sensing parts that will help future projects work with this technology.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>USP-EEL-Brazil</h2> <p> <b> Region: </b>Latin America - Brazil<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 1 - #39 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room207 - 12:00 PM - 12:30 PM</p> <p><a href='https://2018.igem.org/Team:USP-EEL-Brazil'>Lacquase: Biodegradation of estrogens from water</a></p> <p>The detection of endocrine disruptor chemicals (EDCs) in water bodies is increasing. These compounds, also known as estrogens, are highly toxic to fish and may cause long-term harmful effects in humans and other animals.The lack of effective treatment of effluents to remove these micro pollutants has led to the contamination of water reservoirs and pollution of the environment. Our team's proposal was the development of a method for the removal of these estrogens from water. To achieve this goal, we cloned and expressed genetically engineered laccases from filamentous fungi in E. coli strains. Laccases are copper-containing enzymes that act in the oxidation of a various range of phenolic substrates, including EDCs. We plan to explore laccases as model environmental friendly biocatalyzers applied in the biodegradation of estrogenic compounds in water and effluent treatment stations, which can greatly improve water quality.<p></div>
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<div class='column half_size'> <h2>UST Beijing</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Food & Nutrition<br><b>Poster: </b>Zone 5 - #276 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room311 - 3:15 PM - 3:45 PM</p> <p><a href='https://2018.igem.org/Team:UST Beijing'>Natural RE-lease</a></p> <p>Our long-term goal is to improve the health-promoting effects of ginsenosides. We believe that sterols in the ginsenosides are responsible for their main benefits. Therefore in the past projects we engineered synthetic squalene cyclase for in situ production of ginseno-sterols in human cells; and produced synthetic β-glucosidase in E.coli for removal of sugar from ginsenosides. In the current strategy, in the wake of “No release” policy of iGEM community, we are able to by-pass synthetic biology methods to achieve our goal by applying in vitro chemical reactions.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>USTC</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Manufacturing<br><b>Poster: </b>Zone 3 - #181 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room311 - 5:15 PM - 5:45 PM</p> <p><a href='https://2018.igem.org/Team:USTC'>Make TW Beneficial</a></p> <p>In China, tobacco industry is under government's control. To prevent some people from illegally making cigarettes with TWs (tobacco wastes), especially small pieces of tobacco, TWs are all recycled to dispose. The usual way of TW's disposal is to burn, which produces pollution like CO, and nicotine in TW will spread in the air, causing huge waste. Faced with the phenomenon that nicotine in TW is difficult to use, we propose our project to make nicotine in TW beneficial by degrading nicotine to valuable chemicals. We use 3 enzymes: NicA2, PNAO, SAPD to convert nicotine to 3-succinoyl-pyridine, a valuable medicine. And then, we design a nicotine biosensor, combined with LuxR-AHL-lux pR system to activate expression of the degradation enzymes. Furthermore, to lower the harm of Secondhand Smoke, we devise our hardware using bacterial cellulose to absorb nicotine in air for recycling. We believe our project will make TW beneficial!<p></div>
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<div class='column half_size'> <h2>USTC-Software</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Software<br><b>Poster: </b>Zone 2 - #115 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room304 - 4:15 PM - 4:45 PM</p> <p><a href='https://2018.igem.org/Team:USTC-Software'>Biohub 3.0</a></p> <p>Biohub 3.0 is a powerful Synthetic biology platform devoting for efficient working and sharing. Inspired by some weblog sites, it introduces a communication platform for Synthetic biology researchers to share ideas and experimental programs. When coming up with an idea, one can immediately build a specific basic experimental process and share it with Biohub. Experimental programs can be stored and demonstrated in the cloud. Researchers can focus on the content and won't be distracted by the annoying format. More than a community, the platform is also a well-designed kit for Synthetic biology, providing a powerful search engine for researchers. Massively useful information in daily research is covered. Biohub can be a reliable and powerful software for Synthetic biology researchers all over the world.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>UT-Knoxville</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 2 - #124 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room309 - 11:30 AM - 12:00 PM</p> <p><a href='https://2018.igem.org/Team:UT-Knoxville'>Engineering E. coli for Dichloroacetate and Dichloromethane Degradation</a></p> <p>Chemical pollution resulting from large-scale industrial practices can result in volatile organic compound (VOC) accumulation in water supplies. One VOC of interest, dichloroacetate (DCA), is a chlorinated carcinogenic contaminant at clinically high levels. Similarly, dichloromethane (DCM), is used for various industrial applications but its accumulation in water systems poses a threat to aquatic organisms and is considered a carcinogenic to humans. The goal of the UT Knoxville iGEM Team is to design biological systems in E. coli capable of degrading DCA and DCM in order to remove them from the water supply and metabolize them within the cell. Through the addition of Haloacid Dehalogenase (HADase) genes capable of breaking down DCA as well as the development of a DCM biosensor, we are generating biological organisms in order to facilitate our access to clean drinking.<p></div>
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<div class='column half_size'> <h2>Utrecht</h2> <p> <b> Region: </b>Europe - Netherlands<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 4 - #251 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room207 - 2:45 PM - 3:15 PM</p> <p><a href='https://2018.igem.org/Team:Utrecht'>DeTaXion: a synthetic biology-based biosensor to detect environmental pollutants</a></p> <p>Water is one of our most precious resources. Unfortunately, increased use of chemicals such as pharmaceuticals threatens this ecosystem. These contaminants are often difficult to detect. We therefore developed Detaxion, a biosensor to rapidly identify chemical contaminants in water. Detaxion is based on the E. coli chemotaxis system. We engineered the CheY and CheZ chemotaxis proteins to form a bioluminescence resonance energy transfer (BRET) pair. Upon binding of chemicals to the TAR chemotaxis receptor, BRET fluorescence emission changes in a quantifiable manner. We additionally used receptor ligand binding domain swapping to expand the range of detectable chemicals. Finally, we modified receptor methylation sites to extend the detection range. Our results thus far show successful fluorescence energy transfer. Moreover, we used a capillary-based assay to confirm BRET measurements. Taken together, Detaxion constitutes a synthetic biology-based approach to detect chemical waste in water, to safeguard this vital resource.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Valencia UPV</h2> <p> <b> Region: </b>Europe - Spain<br><b>Section: </b>Undergraduate<br> <b>Track: </b>New Application<br><b>Poster: </b>Zone 5 - #306 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room304 - 11:00 AM - 11:30 AM</p> <p><a href='https://2018.igem.org/Team:Valencia UPV'>Printeria</a></p> <p>Access to Synthetic Biology by the interested layperson is currently hampered by several barriers, including a required background knowledge and availability of expensive and often bulky technological equipment. Printeria, a fully-equipped bioengineering device able to automate the process of printing genetic circuits in bacteria but made as simple and easy to operate as a domestic desktop printer, breaks down these barriers. It uses a digital microfluidic system creating little droplets that can be mixed and moved across predefined electrode paths on a PCB surface. Printeria combines this novel system with Golden Gate Technology, low-cost sensors and electronics, and a user-friendly software application. This way, the user is capable of assembling domesticated DNA parts in a one-step reaction and can control all biotechnological steps, from the assembly of parts and transformation to cell culture, with high accuracy. Printeria opens the door to a world of applications affordable for the general public.<p></div>
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<div class='column half_size'> <h2>Vilnius-Lithuania</h2> <p> <b> Region: </b>Europe - Lithuania<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 1 - #65 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room208 - 10:00 AM - 10:30 AM</p> <p><a href='https://2018.igem.org/Team:Vilnius-Lithuania'>SynDrop - Synthetic Droplets for Membrane Protein Research</a></p> <p>Membrane proteins (MPs) are an essential part of major cellular processes and key targets for drug development. Since distinct obstacles, including cell-toxicity and irreversible aggregation in hydrophilic environment impede MP research, we employ microfluidics and bottom-up forward engineering approach to revolutionize it. Octanol-assisted liposome assembly is implemented for synthesis of monodisperse cell-sized liposomes. We encapsulate modified MP assembly machinery alongside cell-free protein synthesis system within liposomes with excellent efficiency. This system serves as overarching framework for effective synthesis, folding, and competent insertion into the membrane of active prone-to-aggregate membrane proteins. We offer a full-synthetic microfactory that, coupled with directed evolution, solves contemporary problems in MP engineering. Additionally, synthetic liposomes enable building artificial logic gates and signaling pathways to study metabolic cascades and protein interaction completely noise-free. Utilizing liposomes as simplified synthetic models of living cells, SynDrop will facilitate scientists to step into fully controlled synthetic era of membrane protein research.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Vilnius-Lithuania-OG</h2> <p> <b> Region: </b>Europe - Lithuania<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 5 - #272 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room312 - 11:30 AM - 12:00 PM</p> <p><a href='https://2018.igem.org/Team:Vilnius-Lithuania-OG'>CAT-Seq: Catalytic Activity Sequencing</a></p> <p>Biological part characterization is the core requirement for engineering complex, yet predictable biosystems. The immense complexity of nature makes this a challenging task. Currently, there is a considerable lack of well-defined, standardized parts and an insufficient grasp of their sequence-function relationship. Notably, state of the art screening methods have insufficient throughput to effectively navigate the extensive biomolecule sequence space. To address this issue we have developed a novel approach to part characterization based on microfluidics and modified nucleotides: Catalytic Activity Sequencing (CAT-Seq). CAT-Seq enables the simultaneous activity measurements of billions of biomolecule variants in parallel. Unique biomolecules are each synthesized in separate water droplets and their activity is recorded and stored into their individual DNA sequences. This information can then be readily retrieved by next-generation sequencing. CAT-Seq can rapidly assess sequence-function relationships, characterize regulatory parts, their interactions, and provide much-needed data for predictively designing novel biological systems.<p></div>
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<div class='column half_size'> <h2>Virginia</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Manufacturing<br><b>Poster: </b>Zone 4 - #220 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room207 - 10:00 AM - 10:30 AM</p> <p><a href='https://2018.igem.org/Team:Virginia'>Quorus: Engineering a Microbial Symphony</a></p> <p>Quorum sensing (QS) is a mechanism where bacteria detect the presence of nearby cells and coordinate their behavior among the population. Utilizing the QS genes of the Lsr operon and T7 RNA Polymerase, we are developing a biologically orthogonal quorum response sensitive to the universal autoinducer AI-2. This system introduces an alternative method of gene induction and biomanufacturing to iGEM, re-engineering microbial coordination of population phenotypes. Further, we have designed a synthetic feedback loop in tandem with the Lsr operon to increase the mean and homogeneity of quorum activation in a colony to levels comparable to industrial inducers like IPTG. This provides a system of self-regulating induction that can produce target proteins cheaper and more efficiently than current industrial methods. The resulting engineered microbe has increased biofilm production compared to the wild type, which has applications such as microbial cellulose biomanufacturing and hyper-virulent control organisms for testing certain microbial antibiotics.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>VIT Vellore</h2> <p> <b> Region: </b>Asia - India<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 5 - #289 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room309 - 9:00 AM - 9:30 AM</p> <p><a href='https://2018.igem.org/Team:VIT Vellore'>Toggle pH: Engineered micro workers for ocean pH homeostasis</a></p> <p>Increase in industrialization has led to an overall increase in Carbon Footprint, the major component of which is Carbon Dioxide, leading to global warming. Among other ill effects of industrialization, the one that has garnered a lot of attention is what we call Ocean Acidification also known as 'the other CO2 problem'. Increasing acidity is directly linked to having potentially harmful consequences for marine organisms, such as depressing metabolic rates and immune responses in some organisms, and causing the worst cases of coral bleaching. In order to tackle these problems our engineered microbe jumps in. This engineered E. coli will interact with it's surrounding environment to utilize protons whose levels regulate activation of certain pH-sensitive promoters. Along with promoters, specific repressor protein-operator binding regulates gene expression so that the transporter proteins are expressed which shuffle bicarbonates, carbonates and protons in and out of cells that bring about pH homeostasis.<p></div>
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<div class='column half_size'> <h2>Warwick</h2> <p> <b> Region: </b>Europe - United Kingdom<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 3 - #182 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room312 - 9:00 AM - 9:30 AM</p> <p><a href='https://2018.igem.org/Team:Warwick'>Safe Water</a></p> <p>Safe water is a global issue. Our team provides solutions to biological, organic and inorganic problems facing polluted water. Biological: The Legionella genus of Bacteria causes disease in humans. We utilise a never before seen regulation system to identify and respond to pathogenic RNA. Organic: Toxic oestrogen concentrations induce sex reversal in fish; the inability for breeding due to lack of males results in population decline. We have artificially tweaked and transferred a recently discovered enzyme pathway into E.Coli which reduces oestrogen toxicity. Inorganic: Lead contamination is responsible for serious health problems. We have designed a system through which lead can be isolated and removed via gas vesicles in Bacillus.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Washington</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Foundational Advance<br><b>Poster: </b>Zone 1 - #23 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room304 - 10:00 AM - 10:30 AM</p> <p><a href='https://2018.igem.org/Team:Washington'>Stronger Together: An efficient, generalizable approach to design biosensors for small molecules</a></p> <p>Chemically induced dimerization (CID), in which two proteins dimerize only in the presence of a small molecule, has been widely used to control cell signaling, regulatory, and metabolic pathways, and used as logic gates for biological computation in living mammalian cells. However, few naturally occuring CID systems and their derivatives are currently available. Creating a CID system with desired affinity and specificity for any given small molecule remains an unsolved problem for computational design and other protein engineering approaches. To address this challenge, we have used a novel strategy to select CID binders from a vastly diverse combinatorial nanobody library. We have created new CID systems that can sense cholecalciferol and artemisinin. We are validating CID biosensors by a yeast three-hybrid system and built structural models to understand the small molecule-induced dimerization. Our work is a proof-of-concept that can be generalized to create CID systems for many applications.<p></div>
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<div class='column half_size'> <h2>WashU StLouis</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Overgraduate<br> <b>Track: </b>Food & Nutrition<br><b>Poster: </b>Zone 2 - #151 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room310 - 11:00 AM - 11:30 AM</p> <p><a href='https://2018.igem.org/Team:WashU StLouis'>DETECTING WHEAT RUST FUNGUS SPORES USING E. COLI AND S. CEREVISIAE</a></p> <p>Virulent races of Puccinia graminis f. sp. tritici (Pgt), or wheat stem rust, have caused devastating effects on cereal grains worldwide, impacting global food security. We are engineering Escherichia coli DH5α and Saccharomyces cerevisiae EBY100 to detect Pgt and improve response times to virulent strains. To detect Pgt, we are creating a device that will germinate spores from the Puccinia genus. The germinated spores produce ribitol, a sugar unique to Pgt. Our engineered DH5α will produce a fluorescent signal in the presence of ribitol, thus detecting Pgt. To detect specific virulent races of Pgt, we will modify yeast to contain the stem rust resistance gene Sr35 from Triticum monococcum. Sr35 recognizes its corresponding effector AvrSr35, secreted by Pgt, as part of the plant’s innate immune system. Using bimolecular fluorescence complementation, our yeast will detect AvrSr35, a first step in being able to indicate the virulence of the germinated Pgt spores.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Waterloo</h2> <p> <b> Region: </b>North America - Canada<br><b>Section: </b>Undergraduate<br> <b>Track: </b>New Application<br><b>Poster: </b>Zone 1 - #68 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room304 - 12:00 PM - 12:30 PM</p> <p><a href='https://2018.igem.org/Team:Waterloo'>E. co-light: Dynamic Optogenetic Control of Co-cultures</a></p> <p>Microorganisms exist in complex and diverse communities. This enables a variety of important interactions including co-metabolism and nutrient cycling. Yet, it can be difficult to culture species together in a laboratory setting. Mixed populations are difficult to maintain primarily due to competition: a difference in growth rates often results in one population outcompeting another. Our team aims to dynamically control E. coli growth by using optogenetics (light-induced gene expression) to regulate the production of MetE, an enzyme essential for bacterial growth. This kind of control could help us overcome a major barrier to maintaining co-cultures: competition between microorganisms. This would open several doors in biotech and research. For instance, metabolic engineering of microbial communities may improve the production of pharmaceuticals, biofuels, and other important materials. Moreover, controllable co-cultures would allow researchers to explore complex interactions between microbes and investigate questions that could not previously be answered due to co-culturing limitations.<p></div>
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<div class='column half_size'> <h2>Westminster UK</h2> <p> <b> Region: </b>Europe - United Kingdom<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 1 - #66 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room310 - 2:45 PM - 3:15 PM</p> <p><a href='https://2018.igem.org/Team:Westminster UK'>Facilitating styrene biodegradation through modification of the tod operon</a></p> <p>While waste plastics are a major environmental concern, polystyrene is one of the least recycled and is amongst the most polluting plastics. We investigated the impact of polystyrene and evaluated chemical methods of reducing its expanded volume using citrus waste chemicals followed by thermal depolymerisation. Methylbenzene (toluene) is metabolised in Pseudomonas putida F1 through the Tod operon, a class of genes which facilitate the transport and metabolism of toluene. Our goal is to use the tod operon to facilitate the biodegradation of styrene monomers. One critical enzyme, the 3-methylcatechol 2,3-dioxygenase (todE) was reported to encounter inactivation by 3-vinylcatechol intermediate of styrene biodegradation thus, our aim is to up-regulate todE in our composite biobricks while computationally modelling it. If successful, these genetic modifications could be applied back to P. putida F1 for more efficient growth on waste styrene on an industrial scale, with the possibility of useful intermediate collection.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>WHU-China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 5 - #314 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room208 - 11:30 AM - 12:00 PM</p> <p><a href='https://2018.igem.org/Team:WHU-China'>Noah's Ark I - Polyphosphate planet</a></p> <p>This year we aim to establish a brand new system of environmental remediation and maintenance in water. Owing to leakage or improper discharge, there are high levels of many chemicals in the water body causing water pollution like eutrophication. To deal with this, we established a set of pathways, used the symbiotic system of algae and our engineered bacteria and finally built an device as platform that can carry them—The Noah’s Ark. The Ark can make use of solar energy and continuously collect specific element or chemical agents from water to achieve the water restoration, as well as reusing the purified chemicals as resources!As an experiment, we used the Ark to recover phosphorus this year. Thus, the first product of a whole series was launched:Noah’s Ark I—Polyphosphate planet.<p></div>
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<div class='column half_size'> <h2>William and Mary</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Information Processing<br><b>Poster: </b>Zone 5 - #280 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room306 - 9:30 AM - 10:00 AM</p> <p><a href='https://2018.igem.org/Team:William and Mary'>Construction of a decoding circuit to process dynamic frequency-encoded information</a></p> <p>One of the most ubiquitous forms of information processing in cellular systems is one in which information is encoded in the time-domain dynamics of signals. Although there exist synthetic circuits capable of encoding information in the time-domain of gene expression, the field lacks circuits that can decode time-domain information. As a result, synthetic circuits are incapable of processing time-domain information, rendering them unable to interface effectively with dynamically encoded cellular signals. To address this problem we created a decoder circuit that uses an incoherent feed-forward loop to convert frequency-encoded information into amplitude-encoded information. Through modeling and experimentation we demonstrate that our IFFL decoder allows synthetic circuits to more accurately process information encoded in the frequency of an oscillatory signal. Our decoder therefore provides a means for teams to design and build synthetic circuits that can better interface with endogenous signaling pathways to access the broad possibilities of time-domain information processing.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>WLC-Milwaukee</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 4 - #213 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room310 - 9:30 AM - 10:00 AM</p> <p><a href='https://2018.igem.org/Team:WLC-Milwaukee'>Ec-Sense</a></p> <p>Fresh water is an increasingly valuable resource in our world where the needs of a burgeoning population are complicated by rapid urbanization. Water contamination and a lack of water security affects millions of people worldwide every year, especially in at risk communities, resulting in illness and transmission of deadly parasites. Unfortunately, ensuring water safety is expensive and time consuming with few testing options available. The WLC-Milwaukee iGEM team has been continuing past work to develop a simple, accurate, and fast test kit for E. coli providing consumers the tools they need to ensure water safety. We have been working with proteins from Lambda phage known to bind the outer membrane protein, LamB, of E. coli conjugated to HRP. This protein-enzyme conjugate binds E.coli and when a colorimetric substrate is used, an easy to read visual signal indicates the presence of E. coli and fecal coliform contamination.<p></div>
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<div class='column half_size'> <h2>Worldshaper-Wuhan</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 5 - #283 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room208 - 4:15 PM - 4:45 PM</p> <p><a href='https://2018.igem.org/Team:Worldshaper-Wuhan'>Long noncoding RNA IL7-AS promotes cell migration in renal cell carcinoma</a></p> <p>Renal cell carcinoma (RCC) is the most common type of kidney cancer in adults. Patients with RCC typically respond poorly to conventional treatment with chemotherapy and radiotherapy. A better understanding of the molecular mechanisms underlying RCC progression, including metastasis, is required to improve RCC treatment. LncRNAs have been shown to have crucial roles in carcinogenesis and metastasis. LncRNA IL7-AS is a newly discovered lncRNA, which has been suggested to be associated with innate immunity. We first examined the expression pattern of IL7-AS in tumor tissues compared with normal tissues via mining various available public data sets, which has suggested IL7-AS may play an important role in carcinomas, especially in renal cell carcinoma. Our project will clone the different splices of IL7-AS and investigate the role of IL7-AS in renal cell carcinoma. Our studies may reveal that IL7-AS is a potential diagnostic biomarker and therapeutic target for renal cell carcinoma.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>Worldshaper-XSHS</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>High School<br> <b>Track: </b>High School<br><b>Poster: </b>Zone 1 - #67 - Saturday - Session I & J - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Saturday -  Room311 - 11:00 AM - 11:30 AM</p> <p><a href='https://2018.igem.org/Team:Worldshaper-XSHS'>Microbial Sensor for Nicotine Capture</a></p> <p>Tobacco consumption is one of the leading preventable causes of death and disease in the world. Nicotine, a major toxic component of tobacco, can cross biological membranes and the blood-brain barrier easily. During cigarette manufacturing, large quantities of tobacco waste with high concentrations of nicotine are produced, and the disposal of these wastes is a serious ecological problem. Microbial organisms play important roles in the tobacco manufacturing process by altering the content of nicotine. Some strains of Pseudomonas exhibits high nicotine-degrading activity, which has a gene cluster encoded enzymes involved in the catabolism of nicotine. In this project, we are aiming to explore a better way to nicotine detection and degradation. The Escherichia coli strains was constructed to easily detect the concentration of nicotine using synthetic biological methods. Meanwhile, over-expressing the key enzyme genes for nicotine bioremediation is also in progress.<p></div>
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<div class='column half_size'> <h2>WPI Worcester</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Food & Nutrition<br><b>Poster: </b>Zone 5 - #300 - Thursday - Session A & B - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Thursday -  Room312 - 9:00 AM - 9:30 AM</p> <p><a href='https://2018.igem.org/Team:WPI Worcester'>ICEberg (ISPs Combatting EPSs)</a></p> <p>Approximately 48 million people contract a foodborne illness in the United States each year. Many of these outbreaks are linked to field crops contaminated with pathogenic bacteria. Inspired by the 2018 romaine lettuce E. coli outbreak in the United States and the work of the 2015 WPI iGEM team, we investigated methods to prevent biofilms of human pathogens on crops. We analyzed the antimicrobial properties of antifreeze proteins, also called ice structuring proteins (ISPs), and curcumin, a component of turmeric. The biofilms were measured by the amount extracellular polymeric substances (EPSs) they produced using crystal violet binding assays. On lettuce leaves, biofilms were quantified by their colony forming units. We also constructed a gene gun, based off the 2016 Cambridge iGEM team's design, to transform lettuce leaves to express antifreeze proteins. In the future, we envision transgenic crops that produce antimicrobial proteins to protect themselves against colonization of human pathogens.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>XJTLU-CHINA</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Therapeutics<br><b>Poster: </b>Zone 3 - #189 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room302 - 12:00 PM - 12:30 PM</p> <p><a href='https://2018.igem.org/Team:XJTLU-CHINA'>EXOport: A CNS-targeting mRNA-packaging exosome device</a></p> <p>In recent decades, scientists have advanced various drug delivery modalities to overcome the blood-brain barrier (BBB), which excludes most neurotherapeutics from entering the central nervous system (CNS), in order to treat CNS disorders. The emerging brain virotherapy using AAV vectors was reported to be immunogenic and costly in manufacturing. In addition, it is rather perilous that therapeutic viruses have to be administered into cerebrospinal fluid. Hence, this year, our team aims to engineer HEK293T cells to produce engineered exosomes, which are extracellular vesicles naturally capable of traversing BBB, hereby providing a low-risk platform for CNS mRNA therapy . The engineering includes: 1. boosting the production of exosomes; 2. facilitating therapeutic RNA to be packaged into exosomes; 3. increasing targeting specificity to neurons with low leakage during the transport of RNA cargo 4. prolonging the expression of therapeutic RNAs in the neurons<p></div>
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<div class='column half_size'> <h2>XJTU-China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Manufacturing<br><b>Poster: </b>Zone 3 - #202 - Saturday - Session K & L - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Saturday -  Room208 - 4:45 PM - 5:15 PM</p> <p><a href='https://2018.igem.org/Team:XJTU-China'>DEcose: A Biosensor-based Directed Evolution Method in Promoting D-psicose Productivity</a></p> <p>D-psicose, the C-3 epimer of fructose, is a natural rare sugar that is low in energy, which exerts several potential health benefits, including preventing diabetes development. Bioproduction of D-psicose shows promise but suffers severely from low enzyme activity. Directed evolution (DE) is an effective strategy for optimizing various enzymes. However, high throughput is never achieved when screening manually or using conventional methods such as HPLC to monitor metabolite concentration. To overcome such difficulties, we have constructed the Sensing, Coupling, Selecting and Iterating framework of DE with quantitative regulatory mechanisms underlying each step. D-psicose productivity is first converted into mRNA expression level, then couples with genes conveying survival advantages by tunable hairpin cassette. The procedure iterates itself in evolving more effective enzymes. This framework for DE could hopefully be applied to improve the functionality of other biomolecules, as long as a suitable biosensor for the final product exists.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>XMU-China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>New Application<br><b>Poster: </b>Zone 2 - #105 - Friday - Session E & F - 12:45 PM - 2:15 PM<br><b> Presentation: </b>Friday -  Room310 - 12:00 PM - 12:30 PM</p> <p><a href='https://2018.igem.org/Team:XMU-China'>Cell-free Systems for Disease Detection and Treatment</a></p> <p>This year team XMU-China developed cell-free systems to detect and treat diseases. Protein detection is unique and significant in biology fields, especially for the detection of protein biomarkers which produced by diseased cells. In order to overcome the deficiencies of traditional detection methods, we have developed an Aptamer Based Cell-free Detection system (ABCD system) of protein. The core of the ABCD system is the specific binding of the aptamer and its target protein. After protein detection, we use outer-membrane vesicles (OMVs) to treat the diseased cells. We designed a system that has realized the efficient, customizable production of OMVs, which serves to encapsulate specific siRNA for disease treatment. To guarantee the practicability detection and treatment system, we also improved KaiABC system and TDPs system to regulate the expression rate of OMVs and store fragile chemicals or biological materials.<p></div>
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<div class='column half_size'> <h2>Yale</h2> <p> <b> Region: </b>North America - United States<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 1 - #81 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room207 - 4:15 PM - 4:45 PM</p> <p><a href='https://2018.igem.org/Team:Yale'>Engineering a synthetic bacterial co-culture to degrade and metabolize PET plastics</a></p> <p>Polyethylene terephthalate (PET) is a polymer used to make plastic products ranging from synthetic fibers to water bottles. Large amounts of PET end up accumulating in the environment as pollution. A bacterium named Ideonella sakaiensis was found to degrade PET by using two enzymes, PETase and MHETase, to break PET into two monomers: ethylene glycol (EG) and terephthalic acid (TPA). However, I. sakaiensis' inability to breakdown PET on a practical time scale undermines its usefulness in eliminating PET pollution. Our project aimed to tackle PET pollution by engineering a synthetic Escherichia coli and Aceintobacter baylyi co-culture to degrade and metabolize PET. Since both E. coli and A. baylyi are more characterized than I. sakaiensis and also capable of high-throughput mutagenesis, PET degradation and metabolism pathways in an engineered synthetic E. coli and A. baylyi co-culture potentially could be optimized to be more efficient than those natively found in I. sakaiensis.<p></div> <div class='clear extra_space'></div>
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<div class='column half_size'> <h2>ZJU-China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>New Application<br><b>Poster: </b>Zone 5 - #311 - Thursday - Session C & D - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Thursday -  Room310 - 2:45 PM - 3:15 PM</p> <p><a href='https://2018.igem.org/Team:ZJU-China'>A Detector - A Framework of Multi-enzyme Assembly</a></p> <p>Injuries–resulting from traffic collisions, drowning, falls or burns - and violence - from acts of war–kill more than 5 million people worldwide annually and cause harm to millions more. A waste of prehospital time led to high mortality. In response to these situations, ZJU-China developed A Detector for point-of-care testing (POCT), a manufacturing platform for other biosensors. Developers can assemble customized enzymes with Tag/Catcher labels in the expected order and immobilize them on a biocompatible matrix of curli fibers. In traumatic shock detecting, a triple-enzyme complex is constructed and performs as a logic gate to integrate two clinical parameters on molecular level. The result is exported through redox reaction on electrodes. Besides, in silicon machine learning is used to build a bridge between real clinical data and currents in our design. In brief, we propose an innovative new application by introducing A Detector, a Tag-Enzyme-Catcher assembly for fast response.<p></div>
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<div class='column half_size'> <h2>ZJUT-China</h2> <p> <b> Region: </b>Asia - China<br><b>Section: </b>Undergraduate<br> <b>Track: </b>Environment<br><b>Poster: </b>Zone 5 - #307 - Friday - Session G & H - 6:45 PM - 8:15 PM<br><b> Presentation: </b>Friday -  Room310 - 4:15 PM - 4:45 PM</p> <p><a href='https://2018.igem.org/Team:ZJUT-China'>LiGEM-DARG: Light-controlled Genetic Engineering Machine for Degrading Antibiotic Resistance Genes</a></p> <p>Due to antibiotic resistance genes (ARGs), microbial infections are increasingly difficult to be treated with antibiotics. The spread of ARGs has become a global challenge. Eliminating ARGs of microbes (e.g. from fermentation industry or laboratories) can reduce the amount of ARGs in the environment. To this end, we developed a light-controlled genetic engineering machine for degrading ARGs, which is comprised of the following modules: 1) To cleave an ARG, Cas9 was expressed under the control of arabinose promoter and guided by the sgRNA which targets at the ARG. 2) To control the expression of Cas9 through light, the efficiency of the light-controlled part was measured with eGFP as reporter. 3) To reduce leaky transcription of sgRNA, the arabinose-controlled repressor LacI was constructed and evaluated with eGFP. 4) A module for cell lysis was constructed to disrupt cells after eliminating the ARG. Together, we provided a novel strategy for controlling ARGs.<p></div> <div class='clear extra_space'></div>
  
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<div class='column half_size'> <h2>Aachen</h2> <ul> <li><b> Region:  </b>Europe - Germany</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 2-158 </li> <li><b> Presentation: </b>Saturday - Room 302 - 2:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Aachen'>Salt Vault</a> <br>Decreasing fresh water availability is not only a problem for desert climate regions like North-Africa and the Middle East, but also for European countries like Germany or the Netherlands, where water pollution is mainly caused by industry. We are modifying the genome of Saccharomyces cerevisiae to increase the uptake of various ions into the cell and store these inside its vacuole. This will be achieved by upregulation of native (vacuolar) ion importers and knock-out of ion exporters. Furthermore, we are expressing heterologous genes from the plant Arabidopsis thaliana in yeast to improve vacuolar ion accumulation, thus creating a microbial dustbin. With this newly generated library of genetically engineered yeasts, we hope to offer a novel way of treating water contaminated by industrial processes and store pollutants in our intracellular reservoir, the Salt Vault. Then this concept can be employed by industries facing problems with high pollution in their process water.</p></div>
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<div class='column half_size'> <h2>Aalto-Helsinki</h2> <ul> <li><b> Region:  </b>Europe - Finland</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 3-191 </li> <li><b> Presentation: </b>Saturday - Room 311 - 2:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Aalto-Helsinki'>Porifi - Purify your pores from acne bacteria</a> <br>Acne vulgaris affects 85% of adolescents at some point of their life, influencing their self-esteem negatively. Currently, antibiotics are among the most common acne treatments. However, 50% of bacteria associated with acne are already resistant to the antibiotics used. Our project aims to develop a novel treatment for acne using an antimicrobial peptide, dermcidin, naturally found in human sweat. Dermcidin has shown to be active against Propionibacterium acnes, the bacterium associated with acne. Patients with acne also have reduced expression of dermcidin, which suggests that it might contribute to the condition. We aim to produce dermcidin tied to a cellulose-binding domain, which would enable the immobilization of the peptide on a cellulose surface. This would allow the usage of dermcidin in various skin care products, such as hydrogel masks and exfoliation pads.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>AFCM-Egypt</h2> <ul> <li><b> Region:  </b>Africa - Egypt</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 4-214 </li> <li><b> Presentation: </b>Sunday - Room 304 - 4:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:AFCM-Egypt'>Knock-in of Circular RNA gene in Hepatocellular Carcinoma cells via CRISPR/Cas9</a> <br>Hepatocellular Carcinoma (HCC) is the leading cause of cancer deaths worldwide & ranked first among cancers in males and next to breast cancer among females in Egypt - based upon results of National Cancer Registry Program of Egypt-. 'Grabbing the problem from the roots' is the best way to decently describe the use of CRISPR, a special gene editing technique that we will be using to modulate a certain circRNA and adjust its gene expression, which is down-regulated in hepatocellular carcinoma. This in consequence modifies miRNA expression thus amending the mRNA gene expression; which is the visible problem in our trials. This will lead us to adopt a novel strategy for miRNA suppression by using circRNAs. This is accomplished by utilizing a synthetic circuit to give rise to a springboard in our battle against cancer.</p></div>
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<div class='column half_size'> <h2>AHUT China</h2> <ul> <li><b> Region:  </b>Asia - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Information Processing</li><li><b> Poster: </b> Zone 5-291 </li> <li><b> Presentation: </b>Friday - Room 309 - 4:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:AHUT China'>Biocompass: The Maze Runner</a> <br>Our project is based on 'The Maze Runner', where Thomas experienced the maze in constant change. How he reached the exit can be abstracted as classics of Graph Theory. Using the theory of biology, we designed experiments for stimulation and through means we found several feasible paths. It's the extension of our project in 2014 and 2016, the difference is: this project is an analogy of the maze, and can be extended to many practical fields. In detail, we combined experimental design with theoretical analysis. Firstly, we used computer processing for theoretical analysis of specifics in the movie. Then, we utilize biology-related instruments and provided materials to process sequence by trail and error. Finally, we extend related methods to other practical fields. The project not only has theoretical values: solving a math problem, but also bears broad application prospects, so it can be considered as an alternative for information processing.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Aix-Marseille</h2> <ul> <li><b> Region:  </b>Europe - France</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 3-199 </li> <li><b> Presentation: </b>Friday - Ballroom A - 4:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Aix-Marseille'>KILL XYL : We have vermin to kill</a> <br>Our project, KILL XYL will provide a treatment for the disease caused by the plant pathogen Xylella fastidiosa. This disease currently causes loss of millions of acres of crops and no cure exists. KILL XYL is an efficient and green cure that works in two steps. First, we detect early symptoms of the disease using a drone equipped with an infra-red camera. We then treat the disease with our product, designed to KILL XYL. This product contains a powerful combination of specific phage-like particles and a green cocktail optimized to break-up bacterial aggregates. Our treatent will kill the bacteria, stop disease progression and unclog the trees vessels, all without using any harmful chemicals, pesticides or GMO crops thanks to synthetic biology.</p></div>
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<div class='column half_size'> <h2>Amazonas Brazil</h2> <ul> <li><b> Region:  </b>Latin America - Brazil</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 1-2 </li> <li><b> Presentation: </b>Friday - Room 306 - 2:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Amazonas Brazil'>CRISPeasy: Building a standard BioBrick toolbox for bacterial genome engineering</a> <br>The building block of Synthetic Biology is to turn biological systems easier to engineer. Standardization is a fundamental key to that goal. CRISPR/Cas9 machinery paves the way for precisely edit living cell genomes. Although revolutionary, SynBio community has an obstacle: CRISPR/Cas9 protocol is superficially standardized and requires a considerable amount of wet lab work due to the multi-plasmid system. We aim to build a toolbox for one-step genome engineering based on a standard BioBrick vector. To go further and beyond, we unified human practice with pattern recognition and machine learning in order to overcome boundaries in the way of SynBio advancement. We also bring the concept of computational repository for lab 'algorithms', the protocols, developing an open and integrated platform to expand the iGEM experience. Our perspective is to leave a legacy and provide a bacterial genome editing machinery based on BioBrick parts assembly easy to engineer as A-B-C CRISPR.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Amsterdam</h2> <ul> <li><b> Region:  </b>Europe - Netherlands</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Manufacturing</li><li><b> Poster: </b> Zone 2-143 </li> <li><b> Presentation: </b>Friday - Room 310 - 9:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Amsterdam'>Photosynthetic magic: Producing fumarate out of thin air using cyanobacterial cell factories</a> <br>Irrespective of where you come from, we all share the global responsibility of ensuring that our societies are sustainable. We have been depleting the world's resources and filling the atmosphere with abnormal levels of CO2 for too long. Our team has decided to take on this challenge by creating photosynthetic cell factories, to directly use the pollutant CO2 as a resource for synthesizing fumarate - a versatile chemical traditionally manufactured from petroleum. We aim to stably produce, sense and export fumarate under conditions mimicking industrial settings. Stable production is achieved by activating and evolving different metabolic modules in response to natural day/night cycles. To detect fumarate, we developed a biosensor suitable for high-throughput screening. Finally, to allow optimal fumarate export, we investigate its transport mechanism. These efforts attracted attention from beyond academia, as our cell factories may help in taking CO2 out of thin air and into a bio-based economy.</p></div>
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<div class='column half_size'> <h2>AQA Unesp</h2> <ul> <li><b> Region:  </b>Latin America - Brazil</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 3-198 </li> <li><b> Presentation: </b>Sunday - Room 302 - 11:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:AQA Unesp'>Insubiota: an alternative treatment to type 1 diabetes using genetically engineered probiotic</a> <br>Our project was inspired on the alarming and increasing number of diabetic people, especially diabetes mellitus type 1 patients, who are insulin dependent. The lack of less invasive treatments has motivated us to develop a new treatment based on the probiotic bacteria Lactococcus lactis, that was engineered to produce a single-chain analog insulin in human diabetic's microbiota. The bacteria will be able to produce the insulin associated with a secretion signal sequence and cell-penetrating peptides, to ensure its uptake. Moreover, the synthesis of the insulin will be controlled by the natural bacteria system of catabolite repression with regulation by a sRNA. At the presence of glucose, the insulin gene expression will be activated, and then, it will be ready to be secreted and absorbed, reaching the blood and performing its biological function. The final product could be a fermented milk or a lyophilized that could be easily ingested by patients.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Arizona State</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 2-116 </li> <li><b> Presentation: </b>Sunday - Room 310 - 4:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Arizona State'>EVR-QST: Engineering Variable Regulators for a Quorum Sensing Toolbox</a> <br>Homoserine lactones (HSLs) are a family of small molecules used to coordinate behavior in some bacteria. Group regulation is known as quorum sensing (QS) and is responsible for behaviors such as bacterial virulence, growth, and bioluminescence. Genetic components from QS systems have been modularized by synthetic biologists and incorporated into synthetic circuits. A significant hurdle to using HSLs in synthetic systems is cross-reactivity between a sender and non-target receivers. Crosstalk can be mitigated by orthogonal systems that do not communicate with each other. Our project characterizes interactions between HSL-producing sender cells and our newly developed receivers (LasR, TraR, and RpaR) using an HSL-induced GFP reporter system. We expect to add 3 new well-characterized receivers to build upon foundational advances such as the work with LuxR (BBa_F2620) by B. Canton. Our work also builds upon important research in biosafety (from our 2016 project) by using ethyl alcohol eliminate HSL bioactivity.</p></div>
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<div class='column half_size'> <h2>AshesiGhana</h2> <ul> <li><b> Region:  </b>Africa - Ghana</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 2-163 </li> <li><b> Presentation: </b>Saturday - Room 304 - 9:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:AshesiGhana'>Gold FEDS: Fluorescent Emitting Devices</a> <br>The objective of our project is to develop a bio-sensor for gold quantification providing a non-toxic approach for small scale mining to extract gold from refractory ore, and enabeling routine monitoring of the ore before a mining endeavour is undertaken. We will engineer E. coli with a gold specific FRET probe using a donor part which is made up of a gold binding protein (golB) attached to a green fluorescent protein (nowGFP) and an acceptor part made up of golB a red fluorescent protein (mRuby2). In the presence of free gold, the two parts will be in close proximity and thus an energy transfer can take place between the donor and acceptor proteins and the red protein will be excited giving off a fluorescent signal. Using calibration experiments we can relate the amount of fluorescence to the amount the gold present, and liberated by the organism from the ore.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>ASIJ TOKYO</h2> <ul> <li><b> Region:  </b>Asia - Japan</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 2-130 </li> <li><b> Presentation: </b>Friday - Room 310 - 4:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:ASIJ TOKYO'>Promoting CRC Detection</a> <br>Colorectal cancer is the second most lethal cancer in the United States, often beginning as benign polyps in the colon and rectum. Despite ease of treatment, cases of CRC are usually detected in its late stages, rendering care difficult. CRC results from the mutation of multiple genes involved with the regulation of cell proliferation and DNA repair, with the ASIJ iGEM team focusing on the Wnt pathway. The activation of the Wnt pathway inhibits the degradation of beta-catenin, a protein that triggers the mutation of oncogenes and tumor suppressor genes. Through detection of these mutated genes and subsequent downstream proteins, our team aims to develop an early screening method that can be adapted to a home detection kit. Building off of a rapamycin induced split-luciferase system characterized by the 2015 Peking iGEM team, our construct consists of a promoter reporter system that looks at two downstream products, C-myc and COX-2.</p></div>
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<div class='column half_size'> <h2>ASTWS-China</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 1-47 </li> <li><b> Presentation: </b>Friday - Room 304 - 2:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:ASTWS-China'>Smart E.coli for B Cells Capture</a> <br>Antibodies are Y-shaped proteins secreted by B lymphocytes that specifically recognize and neutralize antigens. Since the first monoclonal antibody was produced by hybridoma technology in 1975, it has become an important tool in both research and health care. Here we developed a smart E.coli system for capturing B lymphocytes by utilizing the high affinity interaction between antigen and antibody. A peptide fused with RSA and GFP is expressed and purified as antigens for immunization and Elisa assay respectively, and this target peptide and an affinity tag are co-expressed on the surface of E.coli. Coupled with anti-tag magnetic beads, it can be used to screen and capture the desired B cells that secret the corresponding antibodies. These B cells can be fused or gene cloned for antibody producing. This system can also be applied to many aspects of enormous value, such as vaccine production and immune T-cell or tumor cell separation.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Austin UTexas</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 2-112 </li> <li><b> Presentation: </b>Sunday - Room 302 - 11:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Austin UTexas'>Yo GABA GABA</a> <br>Since the discovery of the microbiota-gut-brain axis, there has been interest in using foods containing genetically engineered probiotics as alternative forms of medicine. Our project is aimed at designing a probiotic (specifically Lactobacillus plantarum) capable of producing high levels of gamma-aminobutyric acid (GABA) to treat patients with anxiety and bowel disorders. To make our probiotic overproduce GABA, we intend to overexpress gadB, which encodes glutamate decarboxylase, the enzyme that converts L-glutamate into GABA. Overexpression of gadB will be accomplished by placing it under the control of a Lactococcus lactis constitutive promoter. The efficacy of our probiotic in the human gut will be modeled using the gut of Apis mellifera. Additionally, we have created the Broad Host Range Plasmid Kit, a genetic toolset composed of part plasmids that can be quickly assembled into cassette plasmids, which can then be used to easily genetically modify Lactobacillus plantarum and other non-model organisms.</p></div>
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<div class='column half_size'> <h2>Austin UTexas LASA</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 1-76 </li> <li><b> Presentation: </b>Sunday - Room 304 - 1:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Austin UTexas LASA'>Regulating LevaDOPA Production</a> <br>While its causes are still unknown, Parkinson's disease is currently associated with the lack of dopamine in particular regions of the brain. Presently, one of the most common treatments for Parkinson's is the prescription of levodopa tablets, which increases dopamine levels by introducing dopamine's chemical precursor, levadopa to the body. Our project involves building DNA circuits that produce and regulate levadopa using bacteria rather than pills. One plasmid focuses on the production of levadopa, E. Coli with HpaBC gene, and another regulates and monitors the first plasmid, E. Coli with a multigene assembly that includes a transcriptional factor, PP2551, which will increase levels of levadopa production when IPTG is introduced. We have a Venus fluorescent protein assembled into the sensing plasmid so that we are able to visualize and measure the amount of levadopa produced.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Baltimore Bio-Crew</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 1-18 </li> <li><b> Presentation: </b>Saturday - Room 309 - 11:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Baltimore Bio-Crew'>We're breakin' it down: degrading plastic and stigma in Baltimore through engineered E. coli</a> <br>The Baltimore BioCrew seeks to eliminate plastic pollution, specifically the pervasive issue of microplastics, through a sustainable, innovative mechanism. In comparison to other efforts, our focus is shifted from the macro to the micro by utilizing microorganisms to degrade polyethylene terephthalate (PET). Prior research has identified a Japanese bacterium, Ideonella sakaiensis, that can degrade PET plastics. We designed, synthesized and expressed two genes from I. sakaiensis encoding the enzymes, PETase and MHET, in E. coli. We are currently examining the activity of these enzymes and the ability of our engineered E. coli to degrade PET and produce benign byproducts with potential industrial uses. We plan to utilize the enzymes secreted by our engineered E. coli to degrade microplastics in controlled environments such as a bioreactor, and in doing so, ridding the Baltimore Inner Harbor of plastic pollution.</p></div>
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<div class='column half_size'> <h2>Berlin diagnostX</h2> <ul> <li><b> Region:  </b>Europe - Germany</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Diagnostics</li><li><b> Poster: </b> Zone 1-86 </li> <li><b> Presentation: </b>Saturday - Room 304 - 11:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Berlin diagnostX'>Wormspotter - Applying Toehold Switch Technology to Tapeworm Diagnostics</a> <br>Infections with the pork tapeworm Taenia solium present without symptoms initially, but may cause severe long-term complications like blindness and epilepsy. The disease is endemic in rural Africa, Latin America, and Asia. Currently there is no suitable diagnostic screening test available to identify patients in need of treatment. We set out to develop such a test using toehold switches that generate a visible color reaction on a paper test-strip upon binding of specific tapeworm RNA. We have established SOPs to screen toehold switches using in silico design, nested PCR, and cell-free expression. First sensor candidates show positive results and we succeeded in immobilizing our detection system on paper strips. We have organized a conference with over 150 participants, providing a forum for leaders from academia, pharmaceutical companies, NGOs, and members of the German Parliament, to raise awareness about neglected tropical diseases and to win scientific and financial support.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>BGIC-Union</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 1-54 </li> <li><b> Presentation: </b>Friday - Room 310 - 4:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:BGIC-Union'>dCasentry - A guardian against Lung cancer</a> <br>Lung cancer is the most common cause of cancer death worldwide. The technique of liquid biopsy is much better than the popular biopsy as it obviates pain and complication incurred to patients by detecting various tumor markup, including short strand circulating tumor DNA (CtDNA) in the blood. However, it still requires laboratory apparatus such as PCR instrument.Thus, our project uses paired dCas9 protein links with split T7 RNA polymerase, guided by SgRNA to carry out the procedure. DCasentry not only deals with low CtDNA concentration in blood but also capable of producing various kinds of signal output. We adopt freeze-dried paper chip as our vector of detecting system to simplify its operation as well as storage. The product will be presented as a kit containing all items necessary for detection and can be widely use on the medical field.</p></div>
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<div class='column half_size'> <h2>Bielefeld-CeBiTec</h2> <ul> <li><b> Region:  </b>Europe - Germany</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 4-239 </li> <li><b> Presentation: </b>Sunday - Room 309 - 10:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Bielefeld-CeBiTec'>Expanding the Genetic Code</a> <br>We are exploring the application of unnatural base pairs as an expansion of the genetic code. To prevent loss of unnatural base pairs during replication, we will utilize several systems including CRISPR/Cas9. The expanded genetic code allows for the ribosomal incorporation of multiple non-canonical amino acids (ncAAs) into peptides. With their broad chemical and functional diversity, ncAAs provide a variety of promising applications including protein labeling, photocaging, structure analysis, and specific protein interactions. Therefore, our innovative toolkit for the translational incorporation of ncAAs in E. coli is a valuable contribution to iGEM. Directed evolution of tRNA/aminoacyl-tRNA synthetase pairs enables the site-specific incorporation of ncAAs into peptides. This approach results in an optimal orthogonality to the autologous translation apparatus and a high flexibility concerning the incorporation of multiple ncAAs. As proof of concept, we are developing a rapid test for prions and a new chromatography method for mild protein elution.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Bilkent-UNAMBG</h2> <ul> <li><b> Region:  </b>Europe - Turkey</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Diagnostics</li><li><b> Poster: </b> Zone 2-122 </li> <li><b> Presentation: </b>Friday - Room 311 - 12:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Bilkent-UNAMBG'>DiagNOSE Cancer - Volatile Organic Compound(VOC) Based Biosensor for Early Diagnosis of Cancer</a> <br>Cancer is one of the most common and lethal disease in the world and it is always highlighted that early diagnosis is crucial in terms of cancer treatment. It can often be invasive and painful to diagnose cancer and harmful to the body with the existing methods. At this point, breath test appears as a promising non-invasive and real-time technique which allows the monitoring of metabolic status. Volatile organic compounds(VOCs) in the exhaled breath could provide in vitro detection, classification and discrimination of diseases and microorganisms which can alter the metabolic activities of the body. So that, concentration of VOCs in the exhaled breath changes. Due to metabolic changes that cancer causes, concentration of some specific VOCs increases in the breath of patients and our aim is to have bacteria sensed those VOCs to detect four most common cancer types: lung, breast, colorectal and prostate.</p></div>
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<div class='column half_size'> <h2>BIT</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Diagnostics</li><li><b> Poster: </b> Zone 2-146 </li> <li><b> Presentation: </b>Sunday - Room 302 - 9:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:BIT'>JACOB: Just A Creative assay for the detection Of Biomarkers</a> <br>To facilitate early diagnosis, we contrived a biosensor of onset-pathological biomarkers with high sensitivity, affordability, and analyte modifiability. Detection of Alpha Fetal Protein (AFP, a well-studied cancer indicator) is an exemplar demonstration of this device. Here is how it works: first, lysine is attached to DNA segment that is complementary to AFP-bonding aptamers. When AFP is bonded with aptamer, complementary chain is released; then, trypsin detaches lysine, which then enters fluorescents-producing, lysine-deficient E. coli system. Results are recorded, analyzed, visualized by independently designed device. Here are three highlights: first, biosensor (aptamer) is able to be artificially designed aimed at target biomarker; second, bioamplifier (gene knock-out, strong promoter, cycle amplifier and dual-fluorescence) realizes improvement of signal to noise ratio; third, micro-fluidic chip and fluorescence detector make it possible that the assay can work in practical. Therefore, the performance of system indicates it could be a promising assay in in-vitro diagnosis.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>BIT-China</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Food & Nutrition</li><li><b> Poster: </b> Zone 1-81 </li> <li><b> Presentation: </b>Friday - Room 304 - 4:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:BIT-China'>Sugar Hunter</a> <br>This story happens in a world that is parallel to ours. Sweet receptor brothers, T1R2 and T1R3 are living in a galaxy that is under the threat of sweet monsters who want to rule the galaxy. The sweeter sweet monsters are, the more powerful they are. So the sweetness of every one of them is essential information. Although the brothers are born with the ability to swallow sweet things, they are too weak to fight with so many enemies. So they ask a battle master SC84117 who lives in planet JB486 for help. And they send their gene sequence to SC84117. After reading the sequence, SC84117 transforms into a spaceship with T1R2 and T1R3 brothers. Since then, they travel all around the galaxy to swallow sweet monsters and measure the sweetness of them. They are regard as heroes and there is a name for them, which is 'Sugar Hunter'.</p></div>
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<div class='column half_size'> <h2>BNDS China</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 1-8 </li> <li><b> Presentation: </b>Saturday - Room 311 - 10:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:BNDS China'>High γ-Aminobutyric Acid Concentrated Probiotics</a> <br>γ-Aminobutyric Acid (GABA) can be found in many plants and fermented foods and plays the role of inhibitory neurotransmitter in the human brain. However, high GABA concentrated products can only be produced through the complicated procedures. Our project aims to develop GABA-enriched probiotics including species such as Lactobacillus delbrueckii subsp. Bulgaricus ATCC11482 and Escherichia coli Nissle 1917 through synthetic biology methods that may simplify the process of GABA production. In the bacterial way of GABA synthesis, two proteins, the glutamate: GABA antiporter (gadC) and the glutamate decarboxylase (gadA), form the glutamate decarboxylase (GAD) system. Though many bacteria incorporate these two genes, we select these genes from Lactobacillus brevis NCL912, a Lactic Acid Bacteria that is able to produce high amount of GABA with unique GAD sequences. In addition, we try to optimize the production of GABA in the two probiotics by adjusting the transcriptional rate between gadA and gadC.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>BNU-China</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 2-164 </li> <li><b> Presentation: </b>Friday - Room 306 - 2:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:BNU-China'>MonKeYeast</a> <br>Our project aims to improve the loading capacity of yeast surface display system by displaying the microtubules and the flagellar filaments, respectively, onto the yeast surface. To start with, By using the agglutinin system, we anchored subunits of fibrous polymers which are represented here by microtubulin subunits or FilC, on the cell wall of yeast. Since the particular polymers self-assembly can take place outside cell membrane, we provide the engineered yeast with an environment rich of pre-secreted polymers' subunits. In this way, an extracellular tridimensional display system could be formed, which can enlarge the loading capacity by roughly an order of magnitudes. Moreover, we remodify the structure of FliC, substituting its D3 domain by the particular enzyme. By means of display and assemble specific combination of FilC-enzymes, the co-display ability can be greatly enhanced. As a result, a highly efficient, whole-cell biocatalyst system would be established at the meantime.</p></div>
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<div class='column half_size'> <h2>BOKU-Vienna</h2> <ul> <li><b> Region:  </b>Europe - Austria</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 1-48 </li> <li><b> Presentation: </b>Saturday - Room 310 - 1:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:BOKU-Vienna'>D.I.V.E.R.T. - Directed In Vivo Evolution via Reverse Transcription</a> <br>In vivo continuous directed evolution offers significant advantages over classic in vitro methods as it drastically reduces the amount of time and actual lab work required. Most current approaches, however, are based on globally accelerated mutagenesis inevitably leading to unwanted off-target mutations. D.I.V.E.R.T. represents the concept of a new continuous in vivo evolution strategy that allows full spatial control of mutagenesis by building systems that resemble the retrotransposon life cycle: The gene of interest's mRNA is reverse transcribed in an error prone way and reintegrated into the genome at the respective locus replacing the original gene for several cycles. To demonstrate the generalizability of the process we plan on carrying out our proof of concept experiment in yeast and E. coli. By the end of August we are still in the cloning stage. Additionally, we are working on a single plasmid system for CRISPR-enhanced chromosomal integration in E. coli.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Bordeaux</h2> <ul> <li><b> Region:  </b>Europe - France</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 1-21 </li> <li><b> Presentation: </b>Saturday - Room 306 - 3:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Bordeaux'>Stargate WCC</a> <br>« Stargate WCC » is intended to control cell differenciation into muscular cells in the nematode C. elegans via a regulating mechanism using optogenetics and alternative splicing. We can obtain logical gates involving proteins from STAR family and the White Collar Complex which is a photoinducible system. At the same time, a bioinformatic part has been developed in connection with scientific project. This part is intended to create a workflow to streamline the study of the alternative splicing after the use of RNAseq technology. C.elegans is currently a great model used to study many diseases through foundational research. Our project strives to give necessary tools in biomedical research connected for example to stem cells therapy, bioprinting or research about genetic diseases.</p></div>
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<div class='column half_size'> <h2>BostonU</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 1-59 </li> <li><b> Presentation: </b>Friday - Ballroom B - 1:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:BostonU'>Using Toehold Switches to Drive Recombinase-Based Logic</a> <br>The presence of specific RNAs in cells can be indicative of their state. Detecting these RNAs on a small scale allows for identification of viruses such as Zika and Ebola, however measuring larger sets of RNA remains complex. Current methods of RNA detection are time consuming and require expensive machinery and technical expertise. Toehold switches, biological devices that drive the expression of a gene when activated by trigger RNA, present an alternative with high specificity, wide dynamic range, and ease of use. We present a platform whereby trigger RNAs activate toeholds and induce recombinase expression, driving downstream genetic logic. We integrate this RNA-inducible logic within a cell-free transcription translation system to reduce the experimental burden on time and supplies. This work serves to establish functionality of RNA-inducible logic in a cell-free system, and provides a platform for future implementation in applications that require detection of multiple RNAs, including disease diagnostics.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>BostonU HW</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Hardware</li><li><b> Poster: </b> Zone 3-179 </li> <li><b> Presentation: </b>Friday - Room 312 - 10:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:BostonU HW'>MARS: Microfluidic Applications for Research in Synbio</a> <br>Microfluidics is often an underutilized technology in the field of synthetic biology because designing and using microfluidic chips requires specialized knowledge. Our project, MARS (Microfluidic Applications for Research in Synbio), aims to increase the accessibility of low-cost and easy to use microfluidic systems for researchers in synbio. MARS will comprise of designs for nine chips adapted to our low cost system that perform fundamental synthetic biology procedures, as well as video tutorials, PDFs and protocols for using these chips or fabricating your own. Furthermore, MARS includes a troubleshooting and verification framework for microfluidics allowing researchers to quantitatively grade microfluidic chip designs. Using our end to end system, microfluidics can become a more accessible and practical tool for synthetic biologists to integrate into their labs.</p></div>
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<div class='column half_size'> <h2>Botchan Lab Tokyo</h2> <ul> <li><b> Region:  </b>Asia - Japan</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Food & Nutrition</li><li><b> Poster: </b> Zone 5-270 </li> <li><b> Presentation: </b>Friday - Room 311 - 10:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Botchan Lab Tokyo'>Amino Acid Synthesis Model from Nitrogen - The Air, New and Innovative Food</a> <br>Among some kind of nutrients, proteins are important for body formation. However, it is difficult for people in poor areas to continuously obtain protein rich foods. Therefore, in addition to these ingredients, we propose 'air' anyone can easily take it into the body. We got the idea from Papuans living in Papua New Guinea. Despite their low-protein diets, they have muscular bodies. It is thought that nitrogen fixing bacteria in their intestines are influencing on protein nutrition. We thought to construct a pathway to synthesize amino acids from nitrogen in E.coli, introduce it into the intestine in the future. To synthesize amino acids, we first express nitrogenase to convert nitrogen to ammonia. We then express amino acid dehydrogenases to synthesize glutamate and phenylalanine from accumulated ammonia. This makes it possible to make people available to protein sources by breathing the air. This will contribute to the solution of protein shortage.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Bristol</h2> <ul> <li><b> Region:  </b>Europe - United Kingdom</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 5-293 </li> <li><b> Presentation: </b>Friday - Room 311 - 4:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Bristol'>Bristol BREATHE: BioReactor to Eliminate Atmospheric Threats to Health and the Environment</a> <br>Nitrogen oxide (NOx) gas levels in Bristol are unacceptable. Produced predominantly by car emissions, NOx causes significant morbidity and mortality; it exacerbates lung disease and in Bristol alone kills 300 people per year (8.5% of deaths). NOx is also the third most detrimental greenhouse gas. We aim to engineer E. coli to metabolise NOx using the cytochrome c nitrite reductase (NrfA), which reduces nitrite (NO2-) to ammonia, and the Nap periplasmic nitrate reductase to convert nitrate (NO3-) to nitrite. As NOx dissolves to form both nitrite and nitrate, the use of Nap will improve efficiency. The ammonia produced could be used to make fertiliser, or electricity if incorporated into a microbial fuel cell. An agent-based bacterial model will be adapted to predict system efficiency and behaviour. We aim to contain our bacteria within pods to be strategically placed in the most polluted areas, based on our atmospheric pollution modelling.</p></div>
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<div class='column half_size'> <h2>British Columbia</h2> <ul> <li><b> Region:  </b>North America - Canada</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 5-266 </li> <li><b> Presentation: </b>Sunday - Room 311 - 9:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:British Columbia'>aGROW</a> <br>A single species of bacteria is responsible for many plant diseases - Agrobacterium tumefaciens. Infection with this bacteria causes bizarre growths and tumors on plants that repurpose the plant cell to reallocate its nutrients to the bacterial cell, causing plant death and agricultural loss. In Agrobacterium, the ability to infect a plant is contained in a tumour inducing plasmid which can spread through conjugation between cells. Here we have constructed aGROW, a strain of Agrobacterium capable of disarming pathogenic Agrobacterium and remediating infected soil. We have armed aGROW with a stable plasmid carrying a CRISPR/Cas9 system programmed to remove a key virulence region of the tumour inducing plasmid. Our plasmid employs a separate conjugation system to carry itself through a population of Agrobacterium, preventing them from becoming virulent. We envision this system to be adaptable in disarming other virulent plasmids such as those found in Shigella, Salmonella, and E. coli.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Bulgaria</h2> <ul> <li><b> Region:  </b>Europe - Bulgaria</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Manufacturing</li><li><b> Poster: </b> Zone 5-253 </li> <li><b> Presentation: </b>Friday - Ballroom A - 1:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Bulgaria'>ACE of BASE - Accelerated Crispr-based EvolutiOn For BActerial SElection</a> <br>Directed evolution has been established as an effective strategy for improving the function of biomolecules for industrial and research applications. One of the major pre-requirements for a successful directed evolution of proteins is a simple, fast and cost-efficient method for generating genetic diversity. Many technologies have been used during the years to propagate mutations. One of them is mutator strains, which carry defects in one or more of their DNA repair genes. A large number of gene knock-out, transcriptional or translational silencing methods were applied for mutator strain generation. Regardless of its great potential, the CRISPR guided dCas9 targeting to transcriptional start sites of bacterial DNA repair genes was not among them. Our project is focused on adapting this promising system to manipulate the mutation levels in E. coli in an attempt to create a novel and efficient mutator strain with controllable mutation levels and high transformation efficiency.</p></div>
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<div class='column half_size'> <h2>Cadets2Vets</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 1-29 </li> <li><b> Presentation: </b>Saturday - Ballroom B - 9:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Cadets2Vets'>Affordable, Paper-based Assay For Detection Of Arsenic Contamination</a> <br>Arsenic is a toxic chemical that can be naturally occurring or a result of industrial contamination. The identification of dangerous arsenic concentrations in groundwater and soil is important because arsenic poses a serious health risk to living organisms. Unfortunately, arsenic testing is expensive, time consuming, and requires sophisticated equipment. This is especially relevant to soldiers deployed to resource-scarce, field environments. Our team is using synthetic biology to develop a more affordable, portable, and accessible means of testing. We designed a plasmid that uses ArsR, a negative transcriptional repressor, to regulate the expression of Green Fluorescent Protein (GFP). In the presence of arsenic, ArsR will undergo a conformational change that allows GFP expression. The assay is performed using a low cost paper ticket made by Edgewood Chemical Biological Center and analyzed with ultraviolet light. The development of this circuit would provide an inexpensive way to evaluate arsenic contamination.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Calgary</h2> <ul> <li><b> Region:  </b>North America - Canada</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Manufacturing</li><li><b> Poster: </b> Zone 3-193 </li> <li><b> Presentation: </b>Sunday - Ballroom A - 11:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Calgary'>Astroplastic: from colon to colony</a> <br>Governments and private enterprises alike are gearing up for exploration and colonization of Mars. Two ecological and economical challenges to interplanetary travel arise: the sustainable management of waste produced on a spaceship and the astronomical cost of shipping materials to space. The iGEM Calgary 2018 team used genetically engineered E. coli (expressing genes from Ralstonia eutropha and Pseudomonas aeruginosa) to turn human waste into poly(3-hydroxybutyrate) (PHB), a bioplastic. Our engineered E. coli also secrete the PHB they produce, which improves the efficiency of the system. Our project is a start-to-finish integrated system that can be used in space to generate items useful to astronauts during early Mars missions. This will solve the problem of waste management by upcycling solid human waste into a usable product. It will also reduce astronautical costs, as fuel typically used to ship materials to space can be saved.</p></div>
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<div class='column half_size'> <h2>CAPS Kansas</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 5-278 </li> <li><b> Presentation: </b>Friday - Room 310 - 3:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:CAPS Kansas'>Manipulating Omp pores & AcrAB-TolC efflux pumps using CRISPR/dCas9 to enhance E. coli antibiotic susceptibility</a> <br>Antibiotics are a hallmark of modern medicine having saved numerous lives since the discovery of penicillin in 1928. Bacteria resistant to antibiotics emerged shortly after their initial use, and is an increasing problem as pathogenic strains of bacteria evolve resistance to multiple drugs. In an effort to increase antibiotic susceptibility, we will use CRISPR/Cas9 technologies to disrupt intrinsic resistance mechanisms in E. coli. Specifically, we plan to enhance the expression of Omp pores while also inhibiting the functioning of AcrAB-TolC efflux pumps. Mechanism for effective delivery of a functioning CRISPR system in clinical settings will be explored.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Cardiff Wales</h2> <ul> <li><b> Region:  </b>Europe - United Kingdom</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 5-281 </li> <li><b> Presentation: </b>Sunday - Ballroom A - 9:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Cardiff Wales'>BenthBioFactory: Using plant synthetic biology to generate therapeutics for the treatment of Graves' Disease</a> <br>Our project involves expressing the human thyroid stimulating hormone antagonist (TSHantag) protein in the tobacco Nicotiana benthamiana. Using golden gate cloning, we are generating transcriptional units for transient expression of TSHantag after agrobacterium-mediated transformation in tobacco leaves. TSHantag has been used to treat hyperthyroid disorders such as Graves' Disease, but has not been produced in large amounts appropriate for therapeutic use. The TSHantag protein works by inhibiting autoimmune autoantibodies, which in turn decreases elevated thyroxine levels and reduces pathologic symptoms. In addition, we are expanding the set of tools available for regulating gene expression in plant synthetic biology. Currently, only a small number of regulatory elements have been introduced into the iGEM Phytobrick standard. Therefore, we are generating novel inducible promoter Phytobricks that are responsive to jasmonic acid, salicylic acid and damage associated molecular patterns (DAMPs). The efficacy of these regulatory elements will be measured using a luciferase reporter system.</p></div>
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<div class='column half_size'> <h2>CCA San Diego</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 2-125 </li> <li><b> Presentation: </b>Saturday - Room 306 - 9:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:CCA San Diego'>ImPAHct: Efficient Bacterial System for the Degradation of Polycyclic Aromatic Hydrocarbons in Crude Oil</a> <br>Crude oil is composed of polycyclic aromatic hydrocarbons (PAHs), compounds that are difficult to degrade and environmentally harmful. It is crucial to find a time and cost effective procedure that will catabolize some of the most prevalent, toxic PAHs -- fluorene, phenanthrene, and naphthalene -- to innocuous compounds, such as salicylate and phthalate, which are degradable in metabolic cycles. Certain bacteria contain intermediates in their degradative pathways that simplify gene combination and nucleotide sequencing. We proposed a novel methodology for the degradation of multiple PAHs through the implementation of these bacteria-derived pathways into E. coli. This methodology allows broad spectrum transformation of PAHs within an oil environment into safer residues. A broad host vector can be used to transfer the sequence's degradation capabilities into strains different from E. coli. These bacteria can be incorporated in oil spill remediations and bioreactor use, achieving detoxification through combinatorial genetic bioremediation.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>CCU Taiwan</h2> <ul> <li><b> Region:  </b>Asia - Taiwan</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>New Application</li><li><b> Poster: </b> Zone 2-165 </li> <li><b> Presentation: </b>Saturday - Room 312 - 11:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:CCU Taiwan'>Carindex Caries Index</a> <br>The WHO estimates that nearly all adults will have dental caries at some point, and the actual dental caries rate in Taiwan is 99.2%. Dental caries are easily ignored by patients since they do not hurt until they become serious. In the worst case, treatment requires tooth implantation, a painful and costly procedure. Carindex, a system designated to evaluate the risk of dental caries through saliva, is here to solve these problems. Three parameters that correlated with dental caries: lactate level, competence stimulating peptide (CSP) concentration, pH value, will be detected in the engineered E. coli, B. subtilis and test paper, respectively. Then, machine learning will use these values to generate a prediction model. Ultimately, Carindex utilizes this model along with the detection devices to alert users to their risk of dental caries, and raise public awareness of dental caries. Expectedly, Carindex can decrease dental caries rate significantly in Taiwan.</p></div>
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<div class='column half_size'> <h2>CGU Taiwan</h2> <ul> <li><b> Region:  </b>Asia - Taiwan</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 4-215 </li> <li><b> Presentation: </b>Saturday - Ballroom A - 11:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:CGU Taiwan'>INKOFF: Preserve Fibers to Save Nature</a> <br>Reprocessing paper is very important for reducing deforestation, but the current manufacturing process causes chemical pollution and substantial paper fiber losses. After extensive discussions with paper-making experts, we have devised a plan to replace the chemicals used in traditional paper reprocessing and to increase recovery of paper fibers. In our model, the paper sheets undergo image analysis to determine which spots have ink printed on top and will be sprayed with Saccharomyces cerevisiae which has been engineered to express deinking enzymes upon light induction. Instead of treating all paper pulp, only the spots with ink is shone with light to induce localized deinking. This procedure can remove ink efficiently while protecting most of the paper fibers from being digested. This design extends the lifetime of the paper fibers and reduces wood-logging for making paper.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Chalmers-Gothenburg</h2> <ul> <li><b> Region:  </b>Europe - Sweden</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Diagnostics</li><li><b> Poster: </b> Zone 4-226 </li> <li><b> Presentation: </b>Saturday - Room 309 - 10:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Chalmers-Gothenburg'>BREATHtaking</a> <br>Lung cancer is the cancer form with the highest death toll. Late occurring symptoms and limited expensive detection methods leads to late detection of the disease, which is the most important reason to the high death toll. Specific Volatile Organic Compounds (VOC)s are molecules that have been found in the breath of lung cancer patients. In our project we are creating a biosensor for two of these VOCs. Receptors natively present in the membrane of yeast are replaced with xenogeneic receptors that are able to recognize the VOCs. When the VOCs are sensed the pheromone pathway is initiated and a detection system triggered, ultimately leading to that the yeast cells turns red through interruption of the ADE2 gene. The goal of this project is to create a simple, cheap and harmless method enabling detection of lung cancer in an early stage, leading to more lives being saved.</p></div>
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<div class='column half_size'> <h2>CIEI-BJ</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 4-240 </li> <li><b> Presentation: </b>Saturday - Room 304 - 2:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:CIEI-BJ'>Repel the mosqiutoes, no harm left</a> <br>Mosquitos are capable of transmitting severe diseases to human beings (e.g. malaria, yellow fever,and microcephaly, etc). Consequently many countries have suffered disasters caused by these epidemics, and there were roughly 1.5 million people killed in 2016. Even worse, most mosquito repellents currently used contain DEET which is detrimental to both humans and environment. Thus, our team, CIEI-BJ, decided to design a biosynthesis pathway to produce a special substance, Citronellol, which is nontoxic to human beings, environmental friendly, and can repel mosquitoes effectively. One of the most significant concern during production is to ensure that neither pollution nor toxin will be released. Therefore, our team transferred geraniol synthase gene (GES) and old yellow enzyme gene (OYE) to E.coli and yeast, then let them help us convert glucose into citronellol. Through this method, we can produce citronellol massively with high efficiency, low cost and zero toxic byproducts.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>CIEI-China</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 4-232 </li> <li><b> Presentation: </b>Friday - Room 304 - 10:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:CIEI-China'>Terminator of food waste</a> <br>Disposal of food waste is a huge concern in the society. Improper disposal brings serious pollution and causes tremendous nutrition loss. Considering the high salt concentration in food waste, which greatly influences the efficiency when we use microbes to decompose the waste, our team aims to transfer salt resistant genes into the functional microbes. In this research, we decided to modify the yeast, specifically saccharomycetes cerevisiae, by inserting the E.coli glutamate synthase (gltB) gene and trehalose synthesis related genes (ScTPS1 and SpTPS1) into it, to make the yeast not only decompose the food waste efficiently but resist high salinity. These genes help produce small molecular substances (glutamate and trehalose), which enable the cells to automatically adjust the osmotic pressure in high salinity environments. In this way, we can better take care of the troublesome food waste in a more cost-effective and environmentally friendly way.</p></div>
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<div class='column half_size'> <h2>CLSB-UK</h2> <ul> <li><b> Region:  </b>Europe - United Kingdom</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 5-259 </li> <li><b> Presentation: </b>Friday - Ballroom B - 3:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:CLSB-UK'>Project B.A.T.M.A.N. - Biosynthetic Applications of Toehold switches - miRNAs and nonsmall cell lung cancer</a> <br>Non-small cell lung cancer (NSCLC) has a high mortality and no cheap screening test for early diagnosis. MicroRNA (miRNA) levels in body fluids are postulated to be effective, non-invasive biomarkers for many diseases. miRNAs hsa-mir-15b-5p and hsa-mir-27b-3p are differentially expressed in serum early in NSCLC. We designed two sequence specific sensors to quantify serum levels of these miRNAs using toehold switches, which regulate protein synthesis post-transcriptionally. Binding of an arbitrary RNA sequence to the toehold switch activates translation, producing a fluorescent reporter protein. Fluorescence intensity therefore indicates miRNA levels. This may enable miRNA level detection using toehold switches as a simple detection method for NSCLC. In future, we propose multiple switches used in tandem to detect differentially expressed miRNAs in multiple diseases simultaneously, or even several reporters with different emission peaks to create a multiplexing assay. This would allow for rapid and cheap diagnosis of many diseases from one sample.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>CMUQ</h2> <ul> <li><b> Region:  </b>Asia - Qatar</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 2-90 </li> <li><b> Presentation: </b>Saturday - Room 310 - 11:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:CMUQ'>Developing an eco-friendly approach to reduce the use of biocides for preventing Microbial Induced Corrosion.</a> <br>Sulfate Reducing Bacteria (SRB) cause significant damage to marine oil pipelines necessitating the use of biocides for reducing the Microbial Induced Corrosion (MIC) and potential for great environmental harm. Our team will focus on developing an eco-friendly approach to limit the use of biocides, which are used for targeting the SRB. SRB require high salt and low oxygen so first we plan to genetically engineer a strain of bacteria that would report the osmolarity in oil pipelines, thus act as a biosensor for salt concentrations. The ratio of salinity in the seawater flowing in versus the seawater flowing out of the well will be used to estimate SRB populations in the pipelines, thus limiting the amount of biocides added in times of high Microbial counts. In order to further reduce the environmental impact, we will inactivate the biocides prior to the oil well water being released back into the ocean.</p></div>
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<div class='column half_size'> <h2>ColegioFDR Peru</h2> <ul> <li><b> Region:  </b>Latin America - Peru</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 1-3 </li> <li><b> Presentation: </b>Saturday - Ballroom A - 3:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:ColegioFDR Peru'>Featherase: Improving the Removal of Feather Waste in Peruvian Agriculture</a> <br>One of the most persistent, complicated problems in poultry agriculture is the removal of feather waste. Chicken feathers are mostly comprised of keratin, a strong, fibrous protein that can not be degraded by the likes of conventional proteases such as bromelain, pepsin, or papain. Failure to remove these feathers can lead to extreme health, as well as environment, related issues involving the transmission of diseases such as Avian Flu (H5N1), a disease that can wipe out chicken populations, and also has the potential for devastating effects on humans, having killed approximately 60% of all humans who have been afflicted with the disease since 1997. Our project works to develop a safe, environmentally-friendly solution to this problem involving implementing keratinases kerA & kerBPN into DH5-Alpha E. coli through transformation and assembling a prototype which allows for the degradation of the keratin in the aforementioned feathers.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Cologne-Duesseldorf</h2> <ul> <li><b> Region:  </b>Europe - Germany</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 5-268 </li> <li><b> Presentation: </b>Saturday - Room 310 - 2:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Cologne-Duesseldorf'>Designing a Customizable Synthetic Cell Compartment Toolbox</a> <br>Unknown, unpredictable reactions inside cells pose a major problem in synthetic biological designs as they are affecting the purposed applications. Nature solves the problems of unavoidable interactions or toxification by intermediates and by-products by separating enzymatic reactions through compartmentalization. The integration of pathways into organelles leads to the concentration of enzymes and metabolites, sustains unstable intermediates and enables naturally incompatible reactions to take place simultaneously. We intend to follow nature's example and engineer yeast's peroxisomes to create an intracellular space with customized properties. To do so we establish an open source toolbox and enable booting up a compartment perfectly tailored for a specific application. To demonstrate the potential of this approach we relocate the nootkatone and violacein pathway into peroxisomes, modify the compartment's characteristics using our toolbox applications and thereby create an artificial compartment with optimal reaction conditions.</p></div>
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<div class='column half_size'> <h2>ColumbiaNYC</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 2-140 </li> <li><b> Presentation: </b>Friday - Room 311 - 1:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:ColumbiaNYC'>SilenshR: Bacteria-Mediated Oncogene Silencing as Living Cancer Therapeutic</a> <br>RNA interference (RNAi) therapies modulate endogenous gene expression in target cells through introduction of exogenous short interfering RNAs (siRNA) or their precursors, short hairpin RNAs (shRNA). Challenges for efficient and cell-specific RNAi therapies abound, like rapid renal clearance, degradation by serum nucleases, traversing the lipid bilayer and escape from the intracellular endosome. Bacteria innately colonize the hypoxic and immune-privileged cores of tumors and as such have been explored as potent delivery systems for RNAi-based cancer therapeutics. We are engineering an RNAi gene therapy, utilizing recombinant E. coli that invade mammalian cells and deliver an shRNA payload targeting the aberrantly expressed receptor tyrosine kinase EGFR and transcription factor c-Myc. Bacterial uptake by mammalian cells and endosomal breakdown are mediated by a quorum-inducible Invasin-HlyA operon. We are characterizing the circuit via gentamicin protection assays in vitro using HeLa and prostate cancer lines, and assessing target oncogene knockdown through flow cytometry and qRT-PCR.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Cornell</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Food & Nutrition</li><li><b> Poster: </b> Zone 4-236 </li> <li><b> Presentation: </b>Sunday - Room 311 - 2:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Cornell'>Oxyponics</a> <br>Hydroponics is a rapidly growing area of agriculture that is projected to be a $400 million market by 2020. Despite its potential, hydroponics farmers face low crop yields due to diseases and nutrient imbalances. It is well-documented that a sufficient level of oxidative stress from reactive oxygen species (ROS) is necessary for and can enhance crop growth. To that end, Cornell iGEM developed a novel redox biosensor in E. coli that uses a redox-sensitive fluorescent protein reporter to couple an optogenetic transcriptional circuit to an external optics system. In addition to offering enhanced sensitivity to ROS, this system optimizes oxidative stress by controlling redox-sensitive transcriptional responses with greater precision through an external LED. We believe that this will be promising platform to overcome the drawbacks of hydroponics with potential applications in general agriculture.</p></div>
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<div class='column half_size'> <h2>CPU CHINA</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 5-283 </li> <li><b> Presentation: </b>Friday - Room 302 - 3:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:CPU CHINA'>SynNotch CAR-Tregs V.S. Rheumatoid Arthritis</a> <br>Rheumatoid arthritis (RA) is a serious chronic, inflammatory and systemic autoimmune disease. It is of great essence to develop a kind of novel cell-targeted therapy for RA because there is no radical cure for RA for the time being. To solve the problems existing in the current treatment of RA, we design and build a brand new immunotherapy. FOXP3+ regulatory T cells(Tregs), which can suppress and regulate immune reactions, are modified utilizing a lentiviral vector system to express a chimeric antigen receptor(CAR) targeting inflammatory cells associated with RA. Meanwhile, we insert the Syn-Notch receptor to activate the functional stability pathway of Tregs in the inflammatory environment, which enables them to play their role of immunosuppression in lesions more efficiently and more stably. These two redirections of the two different but interrelated systems on Tregs ensure this novel therapy a promising anti-RA effect.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>CSMU NCHU Taiwan</h2> <ul> <li><b> Region:  </b>Asia - Taiwan</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Food & Nutrition</li><li><b> Poster: </b> Zone 1-19 </li> <li><b> Presentation: </b>Saturday - Ballroom B - 11:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:CSMU NCHU Taiwan'>AFLATOXOUT</a> <br>According to the report conducted by WHO, 'aflatoxin' is a major contributor to the global burden of food-borne diseases. In this project, we focus on two things: firstly, we would like to prevent people from consuming aflatoxin-contaminated food. We would create a device which could detect the amount of aflatoxin inside the food, then transmit the information on to the internet. Therefore both the public and private sector could use the device and mobile application to track contaminated food throughout the nation. Secondly, we would like to create a enzyme-encoded yeast to eliminate the aflatoxin in the patients intestine.We would create a yeast that could produce enzymes that eliminate the aflatoxin inside the human intestine. This can help people suffering from the diarrhoea caused by aflatoxin. Additionally it can also be applied to animal foods, getting rid of the aflatoxin in the animals' bodies that could potentially contaminate our food.</p></div>
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<div class='column half_size'> <h2>CSU Fort Collins</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Energy</li><li><b> Poster: </b> Zone 1-67 </li> <li><b> Presentation: </b>Friday - Room 306 - 9:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:CSU Fort Collins'>When Life Gives You Lemons, Make Limonene</a> <br>Research done in the last 50 years or so has forced humanity to reconsider its gluttonous appetite for petrol based products and energy. The effects of this 'appetite' have been profound, scientifically undeniable, and perhaps the biggest threat humanity has faced. The answer; synthetic biology. Like any emerging field, synthetic biology is experiencing an explosion of novel methods and ideas. We have focused our efforts on altering the metabolic process of the archaea Thermococcus kodakarensis to produce pragmatic amounts of the well-known terpenoid, limonene. Limonene is of great interest due to its myriad of industrial uses, namely as a biofuel. Usage of an archaeal organism's mevalonate pathway allows for a simple incursion of one extra enzyme (limonene synthase) to convert GPP into limonene. Gas chromatography and western blot methods were used to quantify limonene concentration and detect gene expression respectively, in the altered T. kodakarensis.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>CU-Boulder</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 2-136 </li> <li><b> Presentation: </b>Saturday - Room 310 - 10:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:CU-Boulder'>Protein Microcompartments Engineered with a Light Activated Open/Close Switch</a> <br>The ability to control the compartmentalization of enzymes and biologics is needed for drug discovery. Bacterial Microcompartments BMCs are naturally occurring protein structures that act to either sequester harmful metabolic intermediates or concentrate critical cytosolic substrates. Light triggered release of toxic therapeutics from molecular compartments would activate them only where needed and potentially minimize their side effects. We have engineered a BMC with a light activated open/close switch that could be used for drug delivery. We did this by incorporating the light-sensitive compound azobenzene as a non-canonical amino acid into the structure of a BMC coat protein. This allows us to induce the disassembly of the BMC and release its enclosed cargo via photo-stimulation. Our work developing the first light activated BMC expands the synthetic biology toolkit and has the potential to help precisely deliver future therapeutics.</p></div>
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<div class='column half_size'> <h2>Dalhousie</h2> <ul> <li><b> Region:  </b>North America - Canada</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 1-39 </li> <li><b> Presentation: </b>Sunday - Ballroom A - 2:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Dalhousie'>Mining the Microbiome: Using Porcupines as a Source for Cellulolytic Enzymes</a> <br>Lignocellulose, a component of a plant cell wall, is a largely untapped source for low-cost cellulosic biofuel production. First, lignocellulose must be broken down into component sugars by cellulases, hemicellulases, and various debranching enzymes. Because the primary diet of porcupines is lignified plant material, we reasoned that the porcupine microbiome would be filled with enzymes required to degrade lignocellulose. Using in silico metagenomic analysis, we mined the porcupine microbiome to identify, synthesize and characterize microbial enzymes required for cellulose and hemi-cellulose degradation. Using an orthogonal approach, we created a metagenomic library in E. coli from the porcupine microbiome, to be screened for the ability to grow on lignocellulose, or other pathway intermediates, as a sole carbon source. This work provides a solid foundation for future development of a bioreactor utilizing enzymes from the porcupine microbiome to convert lignocellulose into biofuel.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Dartmouth</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Energy</li><li><b> Poster: </b> Zone 2-126 </li> <li><b> Presentation: </b>Friday - Room 306 - 10:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Dartmouth'>Construction of robust bacterial plasmid for ethanol production</a> <br>Pyruvate decarboxylase (PDC) and alcohol dehydrogenase 2 (ADH2) are key enzymes for mediating ethanol production from pyruvate. A particularly well-characterized PDC-ADH system has been found in Zymomonas mobilis, and this pathway has been used to engineer a variety of bacteria for ethanol production. In some cases, this pathway works well, resulting in high levels of ethanol production. In other cases, however, the pathway does not work very well. To understand this, we aim to develop a set of BioBrick compatible expression vectors with different plasmid replicons to allow expression of the PDC-ADH pathway in a range of different bacteria. Organisms expressing the PDC-ADH pathway will be assayed for PDC and ADH activity by enzyme assay and for ethanol production by high-pressure liquid chromatography (HPLC). These new expression plasmids will be useful for other groups looking to expand their BioBrick engineering beyond the confines of current model or 'chassis' organisms.</p></div>
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<div class='column half_size'> <h2>DEIAGRA</h2> <ul> <li><b> Region:  </b>Asia - India</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 5-287 </li> <li><b> Presentation: </b>Saturday - Ballroom B - 9:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:DEIAGRA'>Bio-Beads For Removing Heavy Metal Toxicity From Industrial Effluents</a> <br>Heavy metals, also known as trace metals, are one of the most persistent pollutants in waste water. Biological remediation processes are indicated to be very effective in the treatment of heavy metal pollutants in waste water.The over-expression of metal binding proteins has been widely exploited to increase the metal binding capacity, tolerance or accumulation of heavy metals in bacteria and plants. An expression level of transgene/gene of interest depends upon strength of promoter. Hereby in our project we are focusing on over-expressing the 'Top-4 metal binder protein' (iGEM part BBa_K1478002) and 'Human Metallotheonin 3' by strong synthetic promoter designed by employing bionformatics tools which would be suitable for expression in microbes and plants. We will fabricate bio-beads by immobilizing, bacterial cells which strongly expresses our cloned metallotheonin. Our fabricated beads allows fast, easy and user handy purification of industrial waste water which can be further use for irrigation purpose.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Delaware</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 1-23 </li> <li><b> Presentation: </b>Sunday - Room 304 - 4:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Delaware'>Narrow Spectrum Bacteriocins as Targeted Gut Microbiome Therapeutics</a> <br>The gut microbiome is an exciting field of research that has increased exponentially across the past few years. Many studies have found a correlation between imbalances in the gut microbiome and disease states. Can altering the gut microbiome at all change disease state? In order to evaluate this question, methods are currently needed that can allow researchers to make targeted manipulations to modulate the populations of specific microbes within a microbiome. The goal of our project is to overexpress bacteriocin genes (toxins that bacteria produce that affect other bacteria) in E. coli. The rationale for our methodology this year is to answer questions similar to 'how much of a specific bacteriocin is needed to reduce the abundance of a single microbe by 60%?' Our intention is to generate data that will be used in computational modeling and future experimental projects towards developing gut microbiome therapeutics.</p></div>
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<div class='column half_size'> <h2>DTU-Denmark</h2> <ul> <li><b> Region:  </b>Europe - Denmark</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Diagnostics</li><li><b> Poster: </b> Zone 1-14 </li> <li><b> Presentation: </b>Friday - Ballroom A - 9:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:DTU-Denmark'>DTU Snakebite Detectives: Diagnostic Tool for Venom Discrimination</a> <br>Envenomation by snakebite is one of the most neglected diseases with an estimated 5 million cases each year. These result in an estimated 100,000 deaths and 400,000 disabilities annually. The only effective treatment is animal derived antivenoms, which frequently causes adverse reactions. As a result, they are often only administered as a last resort. We aim to develop a detection-assay that enables us to determine what type of snake a victim is envenomed by. The strategy is to target distinguishable enzymatic features in the different snake venoms by developing suitable substrate-based diagnostics. Our diagnostic tool can be useful in identifying the relative composition of specific venom components in a blood sample and thereby allow for the safest course of treatment.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Duke</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Diagnostics</li><li><b> Poster: </b> Zone 2-118 </li> <li><b> Presentation: </b>Friday - Room 311 - 11:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Duke'>An affordable HIV & Zika rapid lateral flow diagnostic using thermostable griffithsin</a> <br>Our project focuses on developing a lateral flow assay-based Rapid Diagnostic Test (RDT) for inexpensive, early-stage, point-of-care diagnosis of HIV and Zika. Treatment access and public health interventions for these diseases are seriously limited by diagnostics, as current RDTs detect either poorly-conserved viral antigens or the patients' own delayed antibody response and thus are unable to reliably diagnose early-stage infection, while more sophisticated tests are not widely accessible where the disease burden is greatest. Our novel approach enables modular, early-stage detection within an inexpensive, scalable RDT format by using a lectin to detect carbohydrates universal to a number of important viral pathogens in combination with antibodies targeting virus-specific conserved sites. Additionally, we have rationally engineered a thermostable variant of the diagnostic lectin to improve manufacturing economics and device robustness. By enabling earlier and larger-scale diagnosis, we hope this approach will help to improve interventions for these critical global health challenges.</p></div>
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<div class='column half_size'> <h2>East Chapel Hill</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 2-166 </li> <li><b> Presentation: </b>Sunday - Room 306 - 4:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:East Chapel Hill'>Developing the Fluoride Riboswitch as a Technology to Combat Excessive Water Fluoridation</a> <br>Most water sources in developing countries are decentralized. Consequently, drinking water is prone to high levels of fluoride from geological sources, corresponding to endemic fluorosis and may lead to developmental or reproductive defects. Underdeveloped regions in rapidly developing countries, such as China and India, have triple the recommended WHO limit of fluoride in their groundwater. Our project seeks to develop the fluoride riboswitch, an mRNA that can bind to fluoride and regulate the expression of downstream genes, as a technology to combat fluoride contamination in water. We developed a system where the fluoride riboswitch controls the expression of chloramphenicol acetyltransferase, allowing bacteria to grow on the antibiotic chloramphenicol in the presence of fluoride. We will use this operon to screen and select riboswitches with higher responsiveness to fluoride. We envision using engineered fluoride riboswitch systems as tools to sequester, bioremediate, or detect fluoride in a cost effective manner.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>ECUST</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Energy</li><li><b> Poster: </b> Zone 4-221 </li> <li><b> Presentation: </b>Friday - Ballroom B - 10:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:ECUST'>Light Harvester</a> <br>Traditional energy will finally come to exhaustion, and the development of new energy is extremely urgent. To produce hydrogen, which is a clean and efficient source of energy, through microbial photosynthesis is an environmentally friendly and sustainable pathway. However, the facts such as low efficiency of bio-hydrogen production, lack of large-scale application device and others hinder the application prospect of bio-hydrogen production. Therefore, this project aims to expand the absorption spectrum of photosynthetic bacteria by the way of forster resonance energy transfer (FRET) in order to improve the efficiency of the photoreaction. On top of that, we will also design a photo-reactor special for bio-hydrogen production to solve the problem of applying it on a large scale.</p></div>
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<div class='column half_size'> <h2>Edinburgh OG</h2> <ul> <li><b> Region:  </b>Europe - United Kingdom</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 4-213 </li> <li><b> Presentation: </b>Sunday - Ballroom A - 9:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Edinburgh OG'>Modular molecular toolkit for re-sensitisation of antibiotic-resistant pathogens using CRISPR delivered by a two-phage system</a> <br>The threat posed by antibiotic resistant bacteria is a pressing issue which must be addressed. It is difficult and expensive to develop new antibiotics, so our project is designed to make currently available antibiotics useful again. Our aim is to create a toolkit to re-sensitise pathogens to antibiotics using CRISPR and a two-phage system, based on work by Yosef et al. (2015). An engineered lysogenic phage will transfer a CRISPR system to its host bacterium, designed to cleave resistance genes and also confer protection from an engineered lytic phage. When this lytic phage is added to the population, it kills any bacteria that have not been successfully re-sensitised. We chose to target genes found in the highly-resistant ESKAPE pathogens, and worked with 4 different phages - P1, lambda, T4 and T7. Our system was modelled in silico and tested empirically on a specially designed E. coli testing platform.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Edinburgh UG</h2> <ul> <li><b> Region:  </b>Europe - United Kingdom</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 1-13 </li> <li><b> Presentation: </b>Friday - Room 302 - 11:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Edinburgh UG'>SMORE: A Site-specific, Modular Recombination Toolkit for Genetic Engineering</a> <br>Site-specific recombination is widely utilized for genetic engineering; however, a synthetic biology approach is needed to facilitate its use in a rational and bottom-up way. Therefore, we created SMORE, a toolkit containing well-characterized recombinases, their respective target sites, and recombinase activity assay constructs, with their utility demonstrated by three constructs: a gene randomizer, logic gates, and a pulse generator. Among other applications, these could be applied to metabolic engineering to improve the industrial production of high-value compounds. Our human practices concerns the accessibility of SMORE, making it easier to use. First, we systematically reviewed iGEM team composition in previous years to determine whether diversified teams enjoyed more success; second, we built a microfluidic device and had its protocols open-sourced to promote its use outside of the discipline of engineering; lastly, we adjusted the readability of our promotional material and created animations to facilitate the understanding of the concept of SMORE.</p></div>
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<div class='column half_size'> <h2>Emory</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 1-44 </li> <li><b> Presentation: </b>Saturday - Room 312 - 4:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Emory'>Phosphate removal and detection for wastewater treatment</a> <br>The WaterHub at Emory University is a wastewater treatment plant on campus that utilizes bacteria and plants to recycle 400,000 gallons of water a day for non-potable use. The Emory iGEM team has utilized synthetic biology to try to help optimize their system by developing a phosphate accumulating organism that can help them combat the high orthophosphate levels in their wastewater. We have created a number of experimental strains of bacteria with variations in polyphosphate kinase and exopolyphosphatase expression. Their phosphate assimilation rates and growth rates in waterhub sewage with an added carbon source were tested. We have also created a phosphate sensor that takes advantage of a natural phosphate sensing mechanism regulated by promoters called pho regulon. This sensor will allow the cells to indicate when phosphate rates have been lowered by our engineered bacteria.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>EPFL</h2> <ul> <li><b> Region:  </b>Europe - Switzerland</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Diagnostics</li><li><b> Poster: </b> Zone 2-119 </li> <li><b> Presentation: </b>Sunday - Room 306 - 2:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:EPFL'>aptasense</a> <br>The emerging field of cell-free synthetic biology promises to significantly improve molecular diagnostics. Cell-free systems for engineering and implementation allows for fast testing cycles, ready-to-use detection devices, better biosafety, as well as cheap and easy transport and storage. Previously, Pardee et al. developed a cell-free system for detecting viral RNA in patients by engineering toehold switches coupled to lacZ for signal generation. Since many clinical tests rely on the detection of protein biomarkers, we developed a novel scheme for detecting proteins by coupling aptamer based affinity reagents to the toehold-switch concept in cell-free system. We furthermore improved on various aspects of the original Pardee cell-free system to create a tool that is more effective, cheaper and easier to use. Because the system can be rapidly engineered and deployed, and all parts can be modified to recognize different protein or RNA molecules, it's a highly modular and novel diagnostic tool.</p></div>
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<div class='column half_size'> <h2>EpiphanyNYC</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 1-10 </li> <li><b> Presentation: </b>Friday - Room 304 - 9:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:EpiphanyNYC'>Tackling Huntington's Disease with RNA Strand Displacement</a> <br>Huntington's disease (HD) is an autosomal dominant disorder that causes the progressive breakdown of nerve cells in the brain, and currently has no cure. HD is usually adult-onset, and includes symptoms such as amnesia, involuntary movements, and physical incoordination, rendering the patient with a lifespan of a mere ten years after onset. The main cause is a trinucleotide repeat of CAG in the huntingtin (HTT) gene, where a repeat of 40 or more can cause the disease to manifestation. Our goal is to create a synthetic RNA strand displacement technology that targets and blocks endogenous faulty mRNA and releases a corrected RNA strand for proper protein synthesis of the HTT protein. For this, we aim to generate a plamsid with an identical sequence to the human mutant form of Huntington's disease. Ultimately, once technologies are developed to overcome endocytosis and blood brain barrier traversal, an injectable cure can be produced.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>ETH Zurich</h2> <ul> <li><b> Region:  </b>Europe - Switzerland</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 3-169 </li> <li><b> Presentation: </b>Friday - Room 309 - 9:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:ETH Zurich'>CATE - Cancer-Targeting E. coli</a> <br>Treating cancer remains a challenge for modern medicine. Current treatments are often invasive, time-consuming and limited by toxic effects on healthy tissue. An ideal therapeutic should be effective, safe and targeted. We engineered a non-pathogenic strain of E. coli to approach this goal. The combination of autonomous targeting, visualization and externally controlled toxin release provides a novel non-invasive, quick and safe approach to treating cancer. Specifically, following intravenous administration, our E. coli preferentially populates solid tumors due to the properties of the tumor microenvironment. Intracellular accumulation of the cytotoxin azurin and the MRI contrast agent bacterioferritin is controlled by an AND gate which is activated once a population threshold is reached AND lactate, a tumor marker, is present. However, azurin release happens only if the physician confirms the correct localization of the bacteria via MRI and subsequently heats them via focused ultrasound, which activates a thermo-inducible cell lysis system.</p></div>
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<div class='column half_size'> <h2>Evry Paris-Saclay</h2> <ul> <li><b> Region:  </b>Europe - France</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Food & Nutrition</li><li><b> Poster: </b> Zone 1-50 </li> <li><b> Presentation: </b>Friday - Room 309 - 11:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Evry Paris-Saclay'>Psicose</a> <br>The World Health Organisation recognized obesity as a serious illness so we decided to consider ways to combat it's spread and effects. This is how we came across D-Psicose, which is a non-toxic rare sugar and a sweetener with several measurable health effects. Currently, its industrial production is based on purification from organic matter or on epimerization of more common sugars but it remains difficult and expensive. To improve the bioproduction process, we decided to construct a biosensor to screen the best epimerase for the conversion of Fructose into Psicose and corroborate the fluorescence quantifications with HPLC measurements. To be efficient any bioproduction process requires screening of the most efficient enzyme(s). We are bringing to iGEM a new enzyme screening process based on biosensors, which, in the presence of the compound of interest, emit a fluorescent signal and can be used to identify the enzyme that gives the optimal production.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Exeter</h2> <ul> <li><b> Region:  </b>Europe - United Kingdom</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 2-106 </li> <li><b> Presentation: </b>Sunday - Room 302 - 4:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Exeter'>Pili+: modified cell surface pili as a new vogue for bacterial bioremediation</a> <br>Heavy metal ion pollutants have significant effects on local flora and fauna and their leaching has implications for human health. Current treatment methods are energetically costly and, in the case of lime dosing, environmentally detrimental. We aim to investigate E. coli type 1 pili adhesion mechanisms and repurpose the involved structures to bind heavy metal ions in water. Pili are hair-like structures found on bacteria that attach to cell surface mannose molecules, using their terminal pili protein, FimH. Our aim is to fuse a variety of metal binding proteins to the FimH protein by modification of the fimH gene. The modified bacteria will be contained in a fluidised media reactor filter system used in conjunction with a hydrocyclone to prevent GMO release. Our modular cloning strategy, allows us to develop a toolkit for a wide number of pili applications and further future developments.</p></div>
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<div class='column half_size'> <h2>FAFU-CHINA</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 2-153 </li> <li><b> Presentation: </b>Sunday - Room 309 - 2:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:FAFU-CHINA'>Synergism of Phosphate-solubilizing bacteria-plant interactions for bioremediation of metalliferous soils</a> <br>We hope to establish a sustainable, regulable and reusable project to solve the soil polluted by heavy metals. Phosphate-solubilizing bacteria have important functions. In our project, we used the mechanism of the alliance between microbe and plant, by manufacturing Bacillus megatherium, which is a kind of phosphate-solubilizing microorganism exists in the root system, forcing it enhance the plant remediation from two aspects, accumulating heavy metals and defend adversity stress. To achieve the goal of spatial specificity, we make most of the expression system which is regulated by root organic acid. We also used MBP (metal binding peptide) to make accumulation of heavy metal in root system's soil success. Finally, heavy metals will transfer to plant itself. A series of transformation we made in Phosphate-solubilizing microorganism in our project will solve the weakness of hyper-accumulators, therefore, the remediation method will be put into use widely.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Florida Atlantic</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Software</li><li><b> Poster: </b> Zone 3-170 </li> <li><b> Presentation: </b>Friday - Room 312 - 11:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Florida Atlantic'>Welcome to the Machine: Developing a Novel Biosensor for Artemisinin</a> <br>Counterfeit drugs are one of the most serious problems in medicine. Not only do they prevent patients from receiving the treatment that they need, they are difficult for consumers to identify and can promote drug resistance. In order to address this problem, our team is developing a biosensor platform that can detect the presence of the antimalarial drug artemisinin. First, a genetic machine was devised that generates a large amount of protein and then rapidly lyses a cell, releasing that protein into solution. Then, a machine learning protocol was designed to determine if a protein can perform a specific function (in this case, bind artemisinin). Finally, a novel synthetic protein was added to the genetic machine to create a cheap, effective, and relatively foolproof biosensor. Because this system is not limited to artemisinin, it can be used to rapidly create a biosensor for different medications or compounds of interest.</p></div>
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<div class='column half_size'> <h2>Franconia</h2> <ul> <li><b> Region:  </b>Europe - Germany</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Manufacturing</li><li><b> Poster: </b> Zone 4-247 </li> <li><b> Presentation: </b>Friday - Room 306 - 11:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Franconia'>B.E.A.M. - Biocompatible Elastic Artificial Muscle</a> <br>The human muscular system enables supremely precise body movements to perform everyday tasks. While robotic devices improve these capabilities for industrial purposes, currently used medical prostheses can only mimic basic functions of the muscular system. Therefore, we will develop biological synthetic muscles to provide ecological friendly tissue compatible with the human body. At first, we will fabricate biopolymers with integrated molecular machines that will form a tissue capable of a muscle-like contraction. Named molecular machines are based on azo dyes, which can contract by light irradiation. These will be attached to the biopolymer matrix fabricated by Escherichia coli via biotin based catcher-tag systems. Another approach is to express both conductive and elastic P-Pili from Geobacter sulfurreducens and Escherichia coli. Alternating layers of these biopolymers form the dielectric elastomer actuator and the resulting biological tissue can respond to an applied voltage.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Freiburg</h2> <ul> <li><b> Region:  </b>Europe - Germany</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 3-185 </li> <li><b> Presentation: </b>Sunday - Room 312 - 2:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Freiburg'>CARtel - Chimeric Antigen Receptor on T cells Expressed Locally in the Tumor Microenvironment</a> <br>A new approach to cancer treatment is the chimeric antigen receptor (CAR) therapy, which shows promising results fighting tumors in clinical trials. It consists of autologous isolated T cells modified with a chimeric receptor based on the T-cell receptor combined with the recognition domain of an antibody. Upon reinjection, CAR T-cells exhibit cytotoxicity with high affinity towards cells displaying the antigen. However, clinical trials have shown that as tumor antigens are not solely expressed on tumor cells, but also on healthy tissues, grave off-target effects like the Graft-versus-Host-Disease may occur. In order to avoid such side-effects, we engineer CAR T-cell lines specifically activated by factors of the tumor microenvironment. Controlled by a genetic AND-gate system the T cells need two input signals in order to express CAR. This would allow highly localized cytotoxic activity of T cells and provide safer cell-based cancer immunotherapy especially for solid tumors.</p></div>
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<div class='column half_size'> <h2>FSU</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 2-102 </li> <li><b> Presentation: </b>Friday - Room 302 - 4:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:FSU'>Bartii: Cell-Based Therapy for Celiac Disease</a> <br>Celiac Disease (CD) is an autoimmune disorder that affects approximately 75,000,000 people around the world. The disease is triggered by the ingestion of gluten, a protein found in wheat. Common symptoms are abdominal discomfort, diarrhea, and malnutrition. The current practice for treating Celiac Disease is strict adherence to a gluten-free diet. Gluten-free diets are difficult to maintain, diminish the quality of life of CD patients, and on average are 242% more expensive than diets that contain gluten. We are proposing a new approach in the prevention and management of CD where patients are able to enjoy foods that contain gluten through population of the gut with engineered therapeutic cells. The cells will be able to: 1) Degrade gliadin, a peptide in gluten that elicits an inflammatory response 2) Sequester gliadin by binding it to the surface of the therapeutic cells 3) Sequester zonulin, a hormone responsible for enhancing inflammation.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Fudan</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 1-80 </li> <li><b> Presentation: </b>Saturday - Room 302 - 4:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Fudan'>SwordS: antigen density targeting with customized therapeutic responses via SynNotch-Stripe system</a> <br>Antigen density on tumor cells' surface is heterogeneous, which constrains current solid tumor immunotherapy to target only highly expressed tumor associated antigens (TAAs). We designed an antigen density targeting immunotherapy platform, SwordS (SynNotch-Stripe system), that is capable of generating non-monotonic therapeutic responses. To demonstrate the concept, we took advanced-stage hepatocellular carcinoma (HCC), one of the most common malignant tumors and a leading cause of cancer-related death in China, as a potential target of disease treatment by SwordS. In combination with HCC associated antigen responding SynNotch, our genetically engineered cells would generate an antigen density-dependent, triple HCC therapeutic response patterns. Our approach is aimed to reduce the on-target/off-tumor effects and greatly expand the diversification and combined potency of tumor therapy. We believe that SwordS is promising to become a brand new generation's customized therapy developing platform for optimizing cellular immunotherapy against cancerous diseases.</p></div>
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<div class='column half_size'> <h2>Fudan China</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Information Processing</li><li><b> Poster: </b> Zone 1-84 </li> <li><b> Presentation: </b>Sunday - Room 306 - 9:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Fudan China'>MemOrderY: A sequential memory device that monitors the changing of signals</a> <br>Biological memory can be defined as a sustained cellular response to a transient stimulus. Although the existing memory devices can be highly diverse and delicate, they can only record the static state at the instant the recording action happens, therefore, they do not have the ability to monitor the dynamic changing process of one signal. This year, we want to development the concept of cellular memory, and to realize the monitoring of one changing signal. So, we design a unique memory device with sequential structure using recombinases. After we measure the orthogonality and efficiency of our recombinases, we try to engineer our E.coli population to record several static states of the target signal at different time point. Thus, by putting these results together in the right time order with our recombinase-based sequential system, we can finally get an idea of how the signal changes as time goes by.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Gaston Day School</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Energy</li><li><b> Poster: </b> Zone 4-238 </li> <li><b> Presentation: </b>Saturday - Ballroom A - 1:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Gaston Day School'>Engineering E.coli to Improve Alcohols Resistance For Biofuel Production</a> <br>During industrial production of alcohols, large-scale bacterial fermentation is often used to yield more product. However, when the alcohol level in the growth medium nears the toxic concentration for the bacteria, the bacteria will start to break down the alcohol they have created. Therefore, the toxic threshold determines the maximum alcohol production. This year, we have started a new project to increase alcohol resistance in bacteria, which should also increase the toxic threshold. This, in turn, would allow the bacteria to produce higher concentrations of the desired alcohol. E.coli is a good platform for biofuel production because the pathways to produce alcohols such as ethanol, isobutanol and isopropanol already exist. We plan to clone several genes in E.coli, such as GlmY and GlmZ, that are associated with alcohol resistance.</p></div>
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<div class='column half_size'> <h2>Georgia State</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Diagnostics</li><li><b> Poster: </b> Zone 1-61 </li> <li><b> Presentation: </b>Sunday - Room 306 - 2:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Georgia State'>The Novel Synthesis of Factor C: A Story of Blood and Venom</a> <br>Endotoxin contamination is a concern for pharmaceutical and medical devices that are intended to encounter human blood. The most widely accepted test for detection is the Limulus Amebocyte Lysate (LAL), which is produced by harvesting the blood of horseshoe crabs and this has devastated their population. LAL detects concentrations as low as one part per trillion of endotoxins by using the natural clotting mechanism of the horseshoe crab blood in the presence of lipopolysaccharides (LPS) found on the surface of gram-negative bacteria. Factor C is a component of LAL that self-cleaves in the presence of LPS to initiate clotting. We used the cleaving property of factor C to design a novel contamination biosensor. Producing a recombinant fusion of factor C with human chorionic gonadotropin (hCG), will allow us to detect our system using over-the-counter pregnancy tests creating a cheaper and more efficient way to detect endotoxins.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Gifu</h2> <ul> <li><b> Region:  </b>Asia - Japan</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Food & Nutrition</li><li><b> Poster: </b> Zone 2-109 </li> <li><b> Presentation: </b>Sunday - Room 309 - 11:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Gifu'>Sake Sommelier</a> <br>Our team will try to make a new technology called LAM (Lactic acid mediated) communication utilizing GAR+ prion. GAR, or glucose associated repression controls the usage of glucose of yeast. In 2016, it was proved that this pathway is managed by the certain amount of lactic acid. Lactic acid produced by lactic acid bacteria, affects the prion formed gar- and induces the formation of GAR+. Considering this mechanism and terminators of fission yeast and regulating the amount of mRNA of GFP and anti-GFP, we will enable yeast to communicate each other beyond the species of gram-negative bacteria and make a biosensor to sense hiochi.</p></div>
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<div class='column half_size'> <h2>Glasgow</h2> <ul> <li><b> Region:  </b>Europe - United Kingdom</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Food & Nutrition</li><li><b> Poster: </b> Zone 1-33 </li> <li><b> Presentation: </b>Friday - Room 304 - 3:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Glasgow'>Campylocator: Detection of Campylobacter jejuni for the prevention of food poisoning</a> <br>Food contamination and improper handling of raw poultry is the leading cause of food poisoning in the U.K. Campylobacter jejuni is native to poultry but is highly pathogenic to humans and cross-contamination of surfaces and other foods is common. The current detection methods are time consuming and costly and therefore we aimed to create a new cheaper, faster system for detection of this bacteria using synthetic biology. We designed and engineered a dual input biosensor using sensory aspects including campylobacter-specific sugars and quorum sensing to identify any C. jejuni present on a swabbed surface. We also developed an understanding of the legal aspects of using GMO biosensors within the EU. In the future, our biosensor is a potential solution in reducing the risk of food poisoning from Campylobacter.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Greece</h2> <ul> <li><b> Region:  </b>Europe - Greece</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 1-51 </li> <li><b> Presentation: </b>Friday - Room 304 - 11:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Greece'>pANDORRA Engineering and delivering modular RNAi-based logic circuits to treat colorectal cancer</a> <br>Engineering of transcriptional/post-transcriptional synthetic circuits and optimization of delivery systems to transfer them into mammalian cells could revolutionize the development of programmable cellular responses towards a plethora of applications in health and disease. We are developing pANDORRA, an assembly platform for modular RNAi-based logic circuits, capable of integrating multiple endogenous inputs to classify a cell by its miRNA expression profile and trigger a biological actuation. As a proof-of-principle, we are employing this strategy to build a cell-type classifier for colorectal cancer cells inducing fluorescence and/or triggering apoptosis. Simultaneously, in order to design a multi-pronged treatment approach for colorectal neoplasia, we are engineering a novel anti-cancer E.coli agent, facilitating selective adhesion and cell density-dependent invasion into cancer cells, as the delivery module for our classifier circuit. In the future, we envision our system to be employed in a variety of pathological conditions generating reporter signals or protein outputs of therapeutic potential.</p></div>
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<div class='column half_size'> <h2>Grenoble-Alpes</h2> <ul> <li><b> Region:  </b>Europe - France</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Diagnostics</li><li><b> Poster: </b> Zone 5-285 </li> <li><b> Presentation: </b>Friday - Room 310 - 1:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Grenoble-Alpes'>SnapLab, our portable kit that will detect cholera</a> <br>We are designing a pathogen sensitive detector, allowing an easier and more specific diagnostic of cholera. After extracting DNA from the feces and performing the analysis, a nucleic acid sequence will be detected if the patient is infected with cholera. Once these sequences are introduced into the bacteria, fluorescence will be emitted and captured by the camera of a smartphone. The application that we will design will perform the analysis and do the image processing. Plus, the temperature will continuously be monitored within the kit. The greatest advantage of this device will be its capability to communicate the results to its user and to map the cases of cholera. That way, we will be able to know which area is the most affected by the epidemic. Going forward, this kind of device will be replicable for different pathogens, thus allowing to widen the spectrum of this kit's use.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Groningen</h2> <ul> <li><b> Region:  </b>Europe - Netherlands</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Food & Nutrition</li><li><b> Poster: </b> Zone 2-105 </li> <li><b> Presentation: </b>Saturday - Room 312 - 9:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Groningen'>IMPACT - a programmable bacteriophage detection system</a> <br>During the fermentation process of dairy products, such as cheese and yogurt, fermentation bacteria are under constant threat of bacteriophages. Severe infections can result in inferior product quality, wasted processing time and expensive countermeasures. Our team has developed IMPACT: Integrated Modular Phage-Activated CRISPR Tracer. Built in Lactococcus lactis, this bacteriophage detection system consists of two specialized orthogonal CRISPR mechanisms. The first continuously surveys incoming bacteriophage DNA and isolates spacers from it, while the other enables transcription of a signal-gene when a spacer is matched to the pre-programmed target array. To facilitate use, we have developed a closed detection cartridge and bioinformatic algorithms for determining new target sequences. Our product offers rapid on-site detection without techniques that require highly trained personnel. Our goal is to have a positive impact on industries all over the world that depend on fermentation processes and contribute to a better understanding of bacteriophage infections in general.</p></div>
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<div class='column half_size'> <h2>GZHS-United</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 2-145 </li> <li><b> Presentation: </b>Saturday - Room 304 - 2:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:GZHS-United'>Mos Quit X Cry</a> <br>Mosquito-related diseases, such as malaria, dengue fever, cause thousands of casualties and tremendous economic loss every year. In most of the cases, Aedes and Culex are the major source of suffering, and governments around the world take diminishing Aedes and Culex as priority in mosquito-related diseases control. Bacillus thuringiensis israelensis (Bti) and Bacillus sphaericus (Bs) are natural-occurring biological larvicides that are widely used in urban area because they are environmental-friendly and economical. In our project, two mosquito toxic proteins, Cry4Ba and Mtx1, which are derived from Bti and Bs respectively, are coexpressed via transcriptional and translational fusion. The recombinant protein has higher efficiency in larvae elimination and is more extensive insecticidal spectrum than any single of them. Our project has created a new larvicide that specifically target against the larvae of mosquito, and we hope our product could keep people away from the suffering caused by mosquitoes.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Hamburg</h2> <ul> <li><b> Region:  </b>Europe - Germany</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 1-79 </li> <li><b> Presentation: </b>Friday - Room 311 - 2:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Hamburg'>Resistent Germs And How To Fight Them</a> <br>Estimates from the World Health Organization predict a resurgence of bacteria to their long-lost top spot among the most devastating human diseases. How did it come to that? Since the discovery of Alexander Fleming, the first scientist that invented and proved the concept of antibiotics, over the years scientists have discovered a vast number of antibiotics to effectively treat bacterial infections. We could fight most bacterial threats for a long time which lead to a notion of false comfort that everything is under control! However, with the current overuse of antibiotics and acquired resistances among bacteria we are about to enter a new era, the post antibiotic era. We are now reaching the tipping point, at which new strategies are required to overcome multiresistance and prevent a resurgence of devastating infections. Our Project will help to combat multiresistant-infections with a Trojan-Horse-Approach utilizing gallium-loaded siderophores as a resistance-resistant therapy.</p></div>
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<div class='column half_size'> <h2>Harvard</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Manufacturing</li><li><b> Poster: </b> Zone 1-32 </li> <li><b> Presentation: </b>Saturday - Room 312 - 1:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Harvard'>Optimizing Curli Fiber Production as a Scalable Materials Manufacturing Platform</a> <br>Curli fibers, the main proteinaceous component in E. coli biofilms, polymerize extracellularly to form a macroscopic agglomeration of material when isolated in sufficient bulk. It has been demonstrated that functional peptide domains can be fused to the self-polymerizing units of curli to form a variety of functional materials. Thus, curli fibers present a promising platform for the scalable production of programmable materials. Our project focuses on optimizing curli production on two fronts. First, we aim to increase curli export efficiency by optimizing the stoichiometric ratio of proteins involved in the curli pathway. Second, we aim to optimize the conditions for protein-producing cell cultures by growing them in a bioreactor. Our work along these two lines will inform the further development of the curli system as a feasible biosynthetic platform for producing materials at industrially relevant yields.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>HBUT-China</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 1-56 </li> <li><b> Presentation: </b>Friday - Room 312 - 2:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:HBUT-China'>Nickel Hunter: a biosensor that detects nickel ions in the natural environment</a> <br>China is the world's largest producer and consumer of nickel ions. However, nickel and its compounds are one of the primary pollutants in China. They mainly derive from electroplating, nickel metal processing and battery manufacturing. Nickel and its compounds released from the industry have detrimental effects on the environment and hence threaten human health. Therefore, nickel is one of the heavy metals that are often monitored in the environment and food chains. The traditional nickel detecting method is to implement chemical measurement of nickel-containing samples in the laboratory, which is time-consuming, expensive, and difficult to operate. Thus, we expect to create a cheap, user-friendly E. coli biosensor, a type of bacterium that produces fluorescence protein when it detects nickel ions in the environment. Consequently, we can find out the amount of nickel ions existing in a certain environment by examining the intensity of fluorescence produced by the probing bacteria.</p></div>
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<div class='column half_size'> <h2>Heidelberg</h2> <ul> <li><b> Region:  </b>Europe - Germany</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 2-89 </li> <li><b> Presentation: </b>Saturday - Room 302 - 12:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Heidelberg'>THE PHAGE AND THE FURIOUS</a> <br>Darwinian evolution is an enormously powerful concept that drove biology towards astonishing complexity and beauty. This year, the iGEM team Heidelberg aims at harnessing this power to accelerate the engineering of biomolecules for human benefit. To this end, we built upon the PACE (phage-assisted continuous evolution) method: Synthetic biological circuits couple the survival of quickly mutating phages carrying a protein of interest to directed selection within E. coli hosts. Thereby, proteins with improved functions can be evolved within hours. We designed a standardized toolbox that highly simplifies PACE and expands its utility towards various new areas of application, including the development of enzymes for pharmaceutical production. Additionally, we applied machine learning techniques to evaluate and systematically improve protein sequences to serve a desired purpose. Taken together, we provide a new foundational advance by introducing a unique combination of in silico and in vivo directed evolution to Synthetic Biology.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>HFLS H2Z Hangzhou</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 4-225 </li> <li><b> Presentation: </b>Friday - Room 304 - 2:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:HFLS H2Z Hangzhou'>Biosolution to Nitrite Degradation in Industrial Pickle Production</a> <br>Pickles have long been an important part in the worldwide diet. But the nitrite generated in the production of pickles has always been a concerning problem to health and food safety, due to its conversion to carcinogenic nitrosamine once taken up by humans. Currently, most industrial production of pickles relies on the natural decomposing process of nitrite, which is inefficient and often takes months to complete. To make an improvement, we designed a bio-device to make the degradation of nitrite more rapid and environmental-friendly. Our device consists of a positive feedback loop device followed by a fusion enzyme which can reduce nitrite to nitrogen and oxygen. The feedback loop is regulated by a nitrite/nitrate specific promoter to ensure the expression of downstream function proteins only in pickles environment. Our solution drastically shorten the production period and increases profit margin for the multibillion-dollar pickled vegetables industry.</p></div>
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<div class='column half_size'> <h2>HFUT-China</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Software</li><li><b> Poster: </b> Zone 3-171 </li> <li><b> Presentation: </b>Sunday - Room 310 - 9:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:HFUT-China'>BioDesigner Dolphin</a> <br>We developed BioDesigner Dolphin, an information portal which integrates papers, previous teams and BioBricks information along with various algorithms and designs of assistant devices. Users can search for team information, and they will obtain extra information about similar teams as well. Search results are classified into different categories so users will acquire various information efficiently on project overview, description, team awards and so on. The searching engine of BioDesigner Dolphin also allows users to find gene information and explore gene relationship. Besides information acquisition, users are also able to design biological parts with the help of recommendation. We hope BioDesigner Dolphin will improve the working efficiency of researchers and give inspirations to iGEM teams when deciding theme and methodology of their projects.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>HK SKHLPSS</h2> <ul> <li><b> Region:  </b>Asia - Hong Kong</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 1-5 </li> <li><b> Presentation: </b>Friday - Ballroom A - 11:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:HK SKHLPSS'>A Self-Assembled DNA Nanocube for the Diagnosis of H3N2 Influenza</a> <br>DNA is always used a genetic material for information transfer over generations. It's programmability also allows the application in fabricating various objects for diagnostics and therapeutics as the field of DNA nanotechnology. This year, we used DNA to fabricate a three-dimensional cube that is responsive to the presence of H3N2 influenza mRNA biomarker. We used DNA and RNA oligos of the same sequence of the target for detection. From the result, we found that the DNA nanocube specifically responses to the presence of target leading to the opening of the lid. This results in the disassemble of the quadruplex formation and reduction in hemin-mediated peroxidase activity. We proved that a three-dimensional nanodevice can be used for quick diagnosis within 30 minutes and it is applicable for the detection of different biomarkers and we wish to largely produce this diagnostic device with engineered bacteria.</p></div>
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<div class='column half_size'> <h2>HokkaidoU Japan</h2> <ul> <li><b> Region:  </b>Asia - Japan</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 1-88 </li> <li><b> Presentation: </b>Friday - Ballroom B - 12:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:HokkaidoU Japan'>E.co Circle</a> <br>In stock-breeding, animals are fed with grains that contain phytic acids though many livestock are not capable of producing phytase, an enzyme that decomposes phytic acid, and remaining phytic acid is excreted in the excrement. Excreted phytic acid flows into rivers and leads to eutrophication that causes problems such as red tide, which exerts adverse effects on ecosystem and fishery. Under the status quo, people try to cope with this problem by adding phytase to the feed of livestock however, its enzyme activity is thought to be lowered when it is heated during its production. Moreover, the low pH in the stomach of livestock may also lower its activity. In our project, we aim to increase stability against heat and extreme pH by circularizing enzyme using self-assembling peptides (SAPs) which could decrease the amount of phosphate in the excrement and enhance nutrition absorption since phytic acids chelate minerals.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Hong Kong HKU</h2> <ul> <li><b> Region:  </b>Asia - Hong Kong</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Diagnostics</li><li><b> Poster: </b> Zone 1-22 </li> <li><b> Presentation: </b>Saturday - Room 309 - 9:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Hong Kong HKU'>Disease Diagnosis Using 3D Functional DNA Nanostructures produced in-vivo</a> <br>DNA nanotechnology utilizes DNA's chemical properties to produce nanostructures with novel functions. DNA diagnostic nanodevices are produced using the predictable and programmable properties of DNA binding. In our project, we will produce biobricks encoding a 3D nano device which detects diseases, like Huntington's disease and cancers, that produces mRNA biomarkers. The presence of target would induce a conformational change of our nanostructure, which we can be assessed through gel electrophoresis, colorimetric and fluorescence assay. Lastly, we will transform the construct with our biobrick , consisting of our oligos, and reverse transcriptase into E. coli that can facilitate the synthesis of our nanostructure inside the cell. By using E. coli, this will help us to mass produce a diagnostic tool for a specified disease.</p></div>
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<div class='column half_size'> <h2>Hong Kong HKUST</h2> <ul> <li><b> Region:  </b>Asia - Hong Kong</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 4-223 </li> <li><b> Presentation: </b>Saturday - Room 306 - 4:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Hong Kong HKUST'>Genetic Containment Strategy: Preventing the Replication of unintentionally released Genetically Modified Materials through Recombinase-based Deletion</a> <br>Unintentional release of genetically engineered organisms (GMOs) has always been a major safety concern in the field of synthetic biology. Different approaches of genetic containment strategy such as kill-switches and auxotrophic mutants pose some issues of horizontal gene transfer of modified genes and metabolic cross-feeding that may limit the effectiveness of those approaches. To circumvent the shortcomings, we present an alternative safety circuit which is capable of sensing and amplifying a signalling molecule under a time-delay mechanism. After the time-delay, the circuit will trigger the production of a recombinase that splices out the genetically modified segment from the origin of replication (ORI) of the carrier vector, thus preventing replication of the genetically modified segment in the host. Through this genetic containment approach, we hope to create a standardized design to lower the risk of leakage of genetically modified materials to the environment and alleviate public concerns.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Hong Kong UCCKE</h2> <ul> <li><b> Region:  </b>Asia - Hong Kong</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 5-294 </li> <li><b> Presentation: </b>Sunday - Room 312 - 9:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Hong Kong UCCKE'>A meter and medication of Gout: uric acid detector, disintegration and deployment</a> <br>Knowing that about 1% population of the world suffers from gout, which causes extreme pain daily, we would like to use genetic engineering techniques to help those patients. Gout is formed due to uric acid crystallizes and accumulated at synovial fluid. Thus, we wish to develop a rapid detection method to confirm whether he is suffering from gout by measuring the concentration of uric acid in their blood. The cure or relieve gout by preventing the increase of uric acid concentration to a certain threshold is also in progress. Several parts have been designed to achieve the above goals. Assays are also designed to test and demonstrate the sensing or curing ability of our parts.</p></div>
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<div class='column half_size'> <h2>Hong Kong-CUHK</h2> <ul> <li><b> Region:  </b>Asia - Hong Kong</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Diagnostics</li><li><b> Poster: </b> Zone 5-261 </li> <li><b> Presentation: </b>Friday - Room 311 - 11:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Hong Kong-CUHK'>DR. SWITCH (Disease-associated RNA Switch)</a> <br>Influenza A is a rapid changing disease that causes 5,000,000 of death annually worldwide. Among different subtypes, highly pathogenic avian influenza has the highest mortality rate. Challenges of disease control in the modern world with high population mobility remains at the speed and accuracy of diagnosis. However, nowadays influenza A subtyping method rely greatly on RT-PCR, which requires long time, expertise and laboratory space. Meanwhile, a novel type of riboswitch, namely toehold switch, shows its potential in subtyping Influenza A with quicker detection and lower production cost. Our project focus on developing an on-site subtypting method for Influenza A virus subtype H5N1 and H7N9 using toehold switches. An online software program was also developed for designing toehold switch.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>HUST-China</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 2-147 </li> <li><b> Presentation: </b>Saturday - Room 310 - 12:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:HUST-China'>REEBOT</a> <br>The rare-earth elements (REEs), essential in many high-tech products, are becoming increasingly important. However, mining, refining, and recycling of them may yield hazard by-product if not properly managed. Therefore, we have attempted to apply synthetic biology strategies for its proper usage. Here we have proposed REEBOT, the REE robot, which could sense lanthanide ions by its membrane protein, and then catch those ions with the artificial peptides on its surface. After its enriching process, REEBOT would be adsorbed to silicon with the help of Si-tag, enabling us to recycle it. To enhance its efficiency and specificity, we have also designed an awakening system: only under the presence of rare earth elements could REEBOT start its enriching and recycling system, which could also ensure its safety.</p></div>
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<div class='column half_size'> <h2>HZAU-China</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 1-41 </li> <li><b> Presentation: </b>Sunday - Room 310 - 4:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:HZAU-China'>Synchronizer-4C: Computer-Controlled Cell Cycles</a> <br>Cell cycle synchronization is highly needed in many fields and the traditional synchronization methods have different limitations; for example, chemical methods usually have severe side-effects on the natural physiological states of cells while physical methods (like cell sorting) cannot sustain long time synchronization. In this project, we proposed a cell synchronization approach based on a synthetic circuit of light-controlled CRISPR system targeted at OriC to block the initiation of chromosome replication in E. coli cells. Under the control of computer, the cell cycles can be synchronized with tuned lightening patterns. Our synthetic biological approach of cell synchronization has multiple advantages than traditional methods and may become a fundamental tool for biological research.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>ICT-Mumbai</h2> <ul> <li><b> Region:  </b>Asia - India</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 2-127 </li> <li><b> Presentation: </b>Friday - Room 309 - 2:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:ICT-Mumbai'>DyEODORANT: Giving ammonia the blues</a> <br>Ammonia released from hydrolysis of urine is a major reason for the stench in public toilets. Apart from being a put-off, ammonia is also hazardous. Current approaches to tackle this problem include flushing water, using microbes (BioBlocks®) that break down urea in urine to prevent its hydrolysis, and using air fresheners. The first approach requires using copious amounts of water, which is not abundantly available in many parts of the world, while the second is not cost-effective. Finally, spraying air fresheners is not a solution, as it does not get rid of ammonia. We propose to engineer Escherichia coli to assimilate ammonia and convert it into indigoidine, a blue colored compound. Ammonia from air can be dissolved in an aqueous medium and can act as a nitrogen source for the engineered cells that maybe housed in a cassette; the synthesized indigoidine will indicate when the cassette has to be replaced.</p></div>
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<div class='column half_size'> <h2>IISc-Bangalore</h2> <ul> <li><b> Region:  </b>Asia - India</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>New Application</li><li><b> Poster: </b> Zone 2-120 </li> <li><b> Presentation: </b>Saturday - Room 302 - 9:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:IISc-Bangalore'>iFLOAT: a multifaceted approach to cluster bioengineered gas vesicles in vitro and enhance their flotation</a> <br>Gas vesicles (GVs) are hollow protein nanostructures synthesized by phototrophic haloarchaea and cyanobacteria to regulate their flotation in aquatic habitats. Bioengineered GVs have been genetically modified for diverse purposes including ultrasonic molecular imaging, gauging cellular turgor pressures, and vaccine delivery harnessing unique acoustic, mechanical, and surface properties of GVs but none of their current applications exploits their most fundamental characteristic: buoyancy. Our modelling indicates that clusters of GVs float several orders of magnitude better than individual GVs, as buoyancy scales with volume while Stokes' drag scales with effective radius. Our project iFLOAT aims to improve the flotation of gas vesicles by clustering them using three distinct methods charge-based flocculation, biotin-streptavidin interaction, and SpyCatcher-SpyTag heterodimerization and simultaneously develop robust, reproducible flotation assays. Potential future applications of buoyant clusters of bioengineered gas vesicles include bioremediation of oil spills and flotation-based separation and purification of specific targets from mixtures.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>IISER-Mohali-INDIA</h2> <ul> <li><b> Region:  </b>Asia - India</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 5-273 </li> <li><b> Presentation: </b>Sunday - Room 311 - 4:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:IISER-Mohali-INDIA'>gEco: Paper based bio-synthetic system for detection and capture of noxious gases and phenolic compounds</a> <br>Pollution is a major problem worldwide and more severe in developing countries like India. According to WHO database, more than 80% of the people around the world are exposed to pollutants. These are measured by instruments like GC-FID, PTRMS which are costly and cumbersome to install. Therefore, alternative and cost effective approaches are required. So, we would like to develop a detector and capture system for pollutants by designing synthetic circuit in E. coli. For detecting and reducing/capturing salicylate, we designed a synthetic circuit and simulated it for its feasibility based upon kinetic equations. From simulation results, bacteria is showing color gradation from yellow to green on the basis of levels of salicylate present in the environment. We cloned a part of circuit for producing yellow color in bacteria. The cloning of other part for producing gradation of color and developing it as a paper based system is going on.</p></div>
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<div class='column half_size'> <h2>IISER-Pune-India</h2> <ul> <li><b> Region:  </b>Asia - India</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Diagnostics</li><li><b> Poster: </b> Zone 3-186 </li> <li><b> Presentation: </b>Friday - Ballroom A - 10:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:IISER-Pune-India'>TB or not TB? A diagnostic tool</a> <br>Cheap and easily available diagnostic tool for tuberculosis is the need of the hour. Problems faced during TB diagnosis include the long culturing time and expensive microscopy. We aim to create an inexpensive device which can be used by diagnosticians on a day-to-day basis without using microscopic equipment. Our project has three modules: The Hijack module will facilitate faster growth of M. tuberculosis by increasing the frequency of oscillations of certain cell cycle proteins. The Detection module will make the bacteria express chromoproteins, which can be seen by the eye. The Termination module will ensure that the fast growing bacteria are killed after they reach a required population using quorum sensing based killer gene expression. The device will be delivered using a bacteriophage delivery system, and this entire diagnostic process will be carried out in a closed, handy device which we have designed.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>IIT Delhi</h2> <ul> <li><b> Region:  </b>Asia - India</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Information Processing</li><li><b> Poster: </b> Zone 2-148 </li> <li><b> Presentation: </b>Saturday - Room 310 - 4:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:IIT Delhi'>BLAST - Basic Logic Assessment and Signalling Tools</a> <br>Lack of digital responses in Synthetic Biology have inhibited the diverse potential that accompanies the digitization of biological circuits. This year we aim to develop synthetic modules for signal processing in biological systems, in the form of elements of specialized logic gates based on transcriptional regulation. We move from developing near digital logic gates with sharp responses, to more specialized collapsible and reconfigurable circuits which can perform various operations like developing square pulses. Further, to realize this aim of making a square wave generator, we engineered a five node repression based ring network to give digital oscillations. Quantitative computational modelling would be used to tailor the cellular environment and observe period, steepness, noise and amplitude variations. Our project poses to be an integral element in genetic networks intended to solve scientific challenges for years to come, ranging from making light sensitive frequency modulators and bacterial memory storage systems.</p></div>
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<div class='column half_size'> <h2>IIT-Madras</h2> <ul> <li><b> Region:  </b>Asia - India</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Software</li><li><b> Poster: </b> Zone 3-174 </li> <li><b> Presentation: </b>Sunday - Room 309 - 3:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:IIT-Madras'>A digital information catalogue of host organisms for synthetic biology, with supportive software tools</a> <br>With regard to construction of synthetic biological systems, it is observed in several iGEM projects and literature that E. coli could not express quite a number of interesting phenotypes that are native to specific organisms. In such cases it is advantageous to use those organisms and introduce synthetic circuits into them. Hence, it is desirable to have a catalogue of alternative host organisms with specific characters, and a database of protocols, parts and software tools to work with them. Our database will consist of a collection of organisms used as hosts, their physical attributes, protocols involved in culturing and transformation, and host-wise listing of biobrick parts and other vectors. It shall serve as a platform for synthetic biologists to exchange all relevant information about host organisms. Along with the database, a set of necessary computational tools such as codon optimisation will also be developed.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>INSA-UPS France</h2> <ul> <li><b> Region:  </b>Europe - France</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Information Processing</li><li><b> Poster: </b> Zone 2-107 </li> <li><b> Presentation: </b>Saturday - Room 310 - 3:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:INSA-UPS France'>Croc'n Cholera</a> <br>Synthetic biology projects are usually based on a unique strain of microorganism. New exciting possibilities are expected to emerge by using synthetic microbial consortia. This way, the most interesting properties of microorganisms (e.g. detection, production, resistance) can be combined and modified to achieve new desired tasks. This is what we did in our iGEM project. As a proof of concept, we create a synthetic microbial consortium to fight against cholera disease. The players are modified strains of (1) Escherichia coli producing a quorum sensing (QS) molecule to mimic the presence of pathogenic Vibrio cholerae bacteria; (2) Vibrio harveyi producing diacetyl in response to QS molecule; and (3) Pichia pastoris yeast producing antimicrobial crocodile peptides in response to diacetyl. By crossing the border of the cell-to-cell communication between prokaryote-eukaryote, our project brings not only new perspectives to circumvent cholera epidemia but also to design new synthetic biology approaches using microbial consortia.</p></div>
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<div class='column half_size'> <h2>IONIS-PARIS</h2> <ul> <li><b> Region:  </b>Europe - France</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Food & Nutrition</li><li><b> Poster: </b> Zone 2-139 </li> <li><b> Presentation: </b>Saturday - Ballroom B - 12:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:IONIS-PARIS'>SofterShock : a thermo-adaptive solution for fighting extreme climatic conditions on crops</a> <br>Recently displaced from its leading position among global wine producers with a 12% recession last year, France suffers from climate changes and their negative impacts on vineyards. The appearance of extreme temperature events threatens the agricultural economy and farmers have to deal with the unsatisfactory current solutions. Using synthetic biology, we are developing a thermo-adaptive biological product 'SofterShock' for protecting grapevines against climatic hazards. We are engineering a microorganism to make it respond differently according to the temperatures. Below 15°C, anti-freeze proteins will prevent ice-crystal growth and above 37°C, light-reflecting compounds will limit evapotranspiration. Once applied on crops, our solution will possess a double protection: anti-drought and anti-frost. We elaborate a 'killswitch' strategy to limit microorganism dissemination and DNA transfer. In order to not alter plant biodiversity or wine characteristics, we will select the best chassis to combine with novel properties and bring an innovative approach to global crop protection.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>ITB Indonesia</h2> <ul> <li><b> Region:  </b>Asia - Indonesia</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 1-72 </li> <li><b> Presentation: </b>Friday - Room 312 - 1:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:ITB Indonesia'>Dewaruci - Removal of Microplastic Pollution in the Ocean Using Biofilm-based Polyethylene Terephthalate (PET) Degradation</a> <br>Polyethylene terephthalate (PET)-based plastic pollution in the ocean is a very concerning environmental issue. These plastics are extremely difficult to degrade. Moreover, harsh ocean environment breaks down these plastics into tiny fragments called microplastics. Microplastics are commonly ingested by marine life, causing poisoning which could lead to deaths. While larger-sized plastics are easy to collect for recycling, microplastics are impossible to collect, making them an untreatable pollution. ITB_Indonesia team will create a synthetic bacterium which has the ability to remove plastic pollution from the ocean efficiently. This bacterial machine will do its action in four main steps: 1. detection of microplastics; 2. attachment to the microplastics through biofilm formation; 3. plastic degradation using PETase enzyme; 4. conversion of PET-degradation products into nutrition source. Additionally, this bacterium will be designed to survive marine conditions. Through this breakthrough, microplastic pollution would be treated and marine wildlife would be saved.</p></div>
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<div class='column half_size'> <h2>iTesla-SoundBio</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 5-275 </li> <li><b> Presentation: </b>Saturday - Room 309 - 3:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:iTesla-SoundBio'>Eliminating PCB pollution in the Puget Sound by genetically modifying E. coli</a> <br>Polychlorinated biphenyls (PCBs) are a class of man-made organic chlorine contaminants. Although their manufacture has been banned, they remain in the environment today. PCBs are probable carcinogens and toxic; cause immune system and thyroid defects; and its biomagnification up the food chain in the Puget Sound has been particularly detrimental to orcas. Though they persist because they are highly nonreactive, it has been known for several decades that PCBs slowly degrade in the environment. Recently, it was discovered that the bacterium Dehalococcoides mccartyi can break them down with a variety of enzymes, the genes for which were sequenced in 2014 by Wang. However, D. maccartyi is anaerobic and obtains energy through organohalide respiration. We planned to transform these genes into easier-to-work-with E. coli for potential PCB cleanup operations. The end goal was a process using the produced enzymes or technology containing the genetic pathway for use in PCB clean-up operations.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Jilin China</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 2-128 </li> <li><b> Presentation: </b>Friday - Ballroom B - 11:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Jilin China'>GeneGuard: A modular plasmid system designed for chlorophenol degradation.</a> <br>2018Jilin_China takes biosafety into our major concern. Our research interst has been attracted to Chlorophenol, one important raw material in organic synthesis. Though widely used in industrial and agricultural production, the water pollution resulted from the leakage or non-compliance of the emissions becomes a huge threaten to human health. Therefore, we designed a self-regulated circuit with the protein DmpR as the sensor to identify chlorophenol signals and its derivation, and to initiate expression of the two critical enzymes-- monooxygenase and dioxygenase in two E.coli strains for degradation of chlorophenol in water. Additionally, we added a toxin-antitoxin (TA) system for the self-regulation of E.coli growth. In the absence of pollutants, the engineered bacteria will express toxin that can inhibit their own growth. When exposed to contaminants, the expressing of antitoxin will be initiated and block the toxicity, bringing bacteria back to normal, so that the purification mission will be completed.</p></div>
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<div class='column half_size'> <h2>JNFLS</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 1-25 </li> <li><b> Presentation: </b>Sunday - Room 312 - 10:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:JNFLS'>Executioner of colon cancer</a> <br>Cancer mortality rate is very high. The biggest characteristic of cancer cells is rapid cell division, resulting in the hypoxia microenvironment of solid tumor. Our project is to construct three plasmids, which are transported to the solid tumor using the probiotics Nissle 1917 as gene delivery carrier. When the extracellular environment lacks of oxygen, a plasmid in Nissle 1917 can express invasin and Hyl proteins, making the Nisssle 1917 invade into tumor cells, and avoid cell lysosomes endocytosis. After the Nissle 1917 enter solid tumor cells, another plasmid will express TAT protein, inducing cell apoptosis. The specialty of our project is that if the Nissle 1917 enter the nontumorous cells by mistake, the third plasmid will start suicide program, which will not pose a threat to normal cells, achieving the safety of gene therapy.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Judd UK</h2> <ul> <li><b> Region:  </b>Europe - United Kingdom</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 4-207 </li> <li><b> Presentation: </b>Friday - Ballroom A - 12:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Judd UK'>IonIron - a home-testing kit to keep an eye on your iron levels</a> <br>We are aiming to genetically engineer E.coli to detect iron concentrations in saliva as a biological sensor for iron deficiency and overdose. This would ultimately be developed into a cell-free, paper based system. According to the WHO, it is estimated that 1 billion people worldwide as well as over 50% of pregnant women in LEDCs are iron deficient. Iron supplementation programmes exist in 90 countries worldwide; however, most of these are not systematically monitored, implemented or evaluated. Excess iron supplementation can result in an increased risk of developing chronic conditions such as diabetes and arthritis. Monitoring these conditions requires a time consuming method involving expensive equipment and trained personnel which are difficult to find in LEDCs. Our construct will change colour depending on the iron levels in patients' saliva samples. This would make our test inexpensive, unobtrusive and easy to use to help monitor these conditions across the globe.</p></div>
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<div class='column half_size'> <h2>KAIT JAPAN</h2> <ul> <li><b> Region:  </b>Asia - Japan</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 2-141 </li> <li><b> Presentation: </b>Friday - Room 304 - 12:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:KAIT JAPAN'>CAR: Cure Allergic Rhinitis (Hay Fever in Japan)</a> <br>Hay fever in Japan is most commonly caused by pollen from Cryptomeria japonica and Japanese cypress. Which are native Japanese tree species. About 20% of the population currently suffer from this type of seasonal hay fever in Japan. The general symptoms are, sneezing, runny nose, nasal congestion and itchy eyes. There is an opinion that the balancing of helper T cells which controls the immune system is involved. Helper T cells transmitsantigen information to B cells, which are antibody-producing cells. And depending on the type of cytokine produced, it is roughly divided into type 1(Th1) and type 2(Th 2). Our aim is to create a system that produces IL12 to maintain the balance between Th1 and Th2 cells.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Kent</h2> <ul> <li><b> Region:  </b>Europe - United Kingdom</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>New Application</li><li><b> Poster: </b> Zone 5-279 </li> <li><b> Presentation: </b>Friday - Room 310 - 12:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Kent'>LuCas: the unique Cas13a mediated mRNA localization tool</a> <br>Cas13a is a RNA guided endonuclease which degrades RNAs based on alignment of its CRISPR derived guide RNA. To determine the sub-cellular localization of messenger RNA (mRNA) we fluorescently tagged a Cas13a that cannot cleave its target RNA (dCas13a). This was achieved by using four mutations, two in HEPN1 and two in the HEPN2 domains, which although ablating nuclease activity, still permitted dCAS13a to bind the target RNA sequence. In tandem we designed guide RNAs for targeting mRNA of four cytosolic proteins. Visualization of the dCAS13a was achieved by fusion with a GFP, and to enhance target detection, a nuclear localization sequence sequestered the dCas13a-GFP in the nucleus until needed in the cytosol, thus reducing background noise. We have performed verification tests, constructed mathematical models and developed multiple tools for public engagement. Our findings will lead to the development of a new tool for research and potentially in diagnostic laboratories.</p></div>
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<div class='column half_size'> <h2>Kingsborough NY</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 2-101 </li> <li><b> Presentation: </b>Friday - Room 302 - 11:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Kingsborough NY'>Microbes of the Night</a> <br>In synthetic biology, its essential to implement control mechanisms that disable microbes that are unintentionally released into the enviroment. Teams have developed 'kill-switches', or toxic genes are activated under selected conditions. We decided to create a light-inducible kill-switch, based on the design by Wageningen 2016. This complements our previous project (which we are continuing to explore); enhancing E. coli metabolism for wastewater treatment, in dark conditions. The kill-switch is based upon the pDawn system, activating transcription in the presence of blue light. It features MazF, a mRNA-targeting endonuclease. We have designed controls to verify the expression pattern. Furthermore, we introduced additional layers of regulation to prevent premature cell death. Completion of our previous work, together with our kill-switch, is a step towards an environmentally friendly and safe bacterium for nitrogen removal. Moreover, the creation of an effective light inducible kill-switch is a useful addition to the synthetic biology toolkit.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Kobe</h2> <ul> <li><b> Region:  </b>Asia - Japan</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Food & Nutrition</li><li><b> Poster: </b> Zone 3-188 </li> <li><b> Presentation: </b>Sunday - Room 309 - 11:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Kobe'>Tea Ceremony Master Bug: Evaluating Tea Quality with a Biosensor for L-theanine</a> <br>The aim of our project is to create a biosensor for evaluating the concentration of L-theanine. Theanine is an amino acid primarily found in particular plants, especially in tea plant (Camellia sinensis). Theanine boosts alpha brain waves, promoting relaxation. In addition, theanine is one of the taste ingredients of green tea, which is called as 'umami' in Japanese, meaning pleasant savory taste. For these reasons, green tea containing the more theanine is considered to have the higher quality. Currently, the theanine content in green tea is measured by instrumental analysis depending on the expensive equipment. To reduce the cost and special technique required for the measurement, we aimed at developing a bacterial sensor to evaluate the theanine content in green tea based on identification of the genes in Bacillus subtillis that are induced in the presence of theanine.</p></div>
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<div class='column half_size'> <h2>KU Leuven</h2> <ul> <li><b> Region:  </b>Europe - Belgium</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>New Application</li><li><b> Poster: </b> Zone 2-167 </li> <li><b> Presentation: </b>Saturday - Room 311 - 3:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:KU Leuven'>HEKcite: Measuring frequency change of an artificial rhythm in HEK cells for therapeutic drug monitoring</a> <br>Lack of continuous therapeutic drug monitoring is associated with increased health costs, morbidity and mortality. A more dynamic sensing system could improve the therapy and quality of life of patients taking drugs with a narrow therapeutic range. Here, an electrically oscillating system consisting of genetically modified Human Embryonic Kidney (HEK) cells is proposed. After transfecting HEK cells with genes encoding key ion channels, an intrinsic rhythm of subsequent de- and repolarization was obtained. Molecular substrates, such as drugs, can open or close these ion channels and thus affect the frequency of the rhythm. This change in frequency can then be measured in vivo by use of a multi-electrode array and correlated to the concentration of the drugs in the blood. Additionally, substrate specificity can be chosen by integration of a certain substrate-sensitive ion channel into the oscillating system. This multipurpose sensor could be developed for medical and biotechnological applications.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>KUAS Korea</h2> <ul> <li><b> Region:  </b>Asia - Korea, Republic Of</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Diagnostics</li><li><b> Poster: </b> Zone 4-227 </li> <li><b> Presentation: </b>Saturday - Room 304 - 11:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:KUAS Korea'>POO-robiotics: Check Your BOwel and rebalance the Gut (CYBOrG)!</a> <br>Everybody poops. A stool analysis is a cheap and useful pre-diagnostic tool for many human diseases by chemical and biological examinations of daily stools. For instance, the colon cancer can be pre-screened by checking the presence of occult blood in feces. However, the procedure of collecting samples and delivering it to the laboratory often makes people cumbersome and therefore causes a delay of the examination. This year at iGEM, team KUAS_Korea presents 'POO-robiotics', a do-it-yourself (DIY) stool analysis at home. We employ Lactobacillus plantarum L67 as a chassis, a probiotic with antiallergic activity and used as a yogurt starter. The designed genetic circuit will convert bowel conditions into color pigments. As a proof of concept, we focused on the screening of occult blood, pH variation, and bile salt residues. After ingesting our 'POO-robiotics', individuals can identify their own bowel conditions at home by simply checking the color of their feces.</p></div>
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<div class='column half_size'> <h2>Kyoto</h2> <ul> <li><b> Region:  </b>Asia - Japan</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 5-292 </li> <li><b> Presentation: </b>Friday - Room 312 - 2:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Kyoto'>B.xylophilus Busters-the attempt to kill pine-wood nematodes by feeding RNAi</a> <br>Pine-wilt disease caused by Bursaphelenchus xylophilus causes tremendous damage to pines in Asia and Europe. However, the existing counter-measures are not only insufficient, but also cause environmental and ecological damage. We engineered a solution to killing nematodes effectively and specifically by focusing on the nematode's diet: yeast living inside pines. We selected target genes which were both nematode-specific and predicted to be essential for survival. We then engineered yeast which express dsRNA targeting these genes, with the goal of feeding the engineered yeast to the nematodes to knock down their genes (feeding RNAi). Furthermore, we predict that engineered yeast may be used to colonize healthy pines, functioning as a preventive measure against nematode infestation. The behavior of dsRNA in yeast is still not well understood, and establishment of a feeding RNAi system in pine-wood nematodes is unprecedented. Thus, our method will also support fundamental research on RNAi and pine-wood nematodes.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Lambert GA</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 1-85 </li> <li><b> Presentation: </b>Saturday - Room 309 - 12:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Lambert GA'>CLiP'd: Characterizing non-Lysosomal Inducible Protein Degradation</a> <br>In the development of genetic circuits, researchers often face issues with the overlap of protein expression. As a result, the 2018 Lambert iGEM team aimed to develop a clean way to 'switch' off protein expression by further characterizing a proteolytic mechanism known as ClpXP. An inducible genetic construct was made to express tsPurple (a chromoprotein) and degrade via ClpXP upon induction of varying levels of IPTG, resulting in correlating amounts of protein degradation. Data was collected on the team's engineered Chrom-Q, a 3-D printed camera-device that supports a constant light source for centrifuged cells; in turn the data was analyzed using Lambert iGEM's self-constructed software app to determine HSL values. The purpose and goal for this technology was to promote scientific research under any financial circumstance to quantify data in standardized conditions. Measuring relative strengths of protein degradation using self-engineered products will allow an economic approach in characterizing non-lysosomal proteolysis.</p></div>
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<div class='column half_size'> <h2>Lanzhou</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 2-138 </li> <li><b> Presentation: </b>Sunday - Room 311 - 3:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Lanzhou'>A novel method in controling weeds and pests by tandem RNA Interference</a> <br>Weeds and pests are most important damages to the crop yield in the world. Traditional ways like using herbicides and pesticides will easily cause resistance and pollution problems. In addressing this challenge we focus on RNA interference (RNAi), a novel molecular technology that used for gene knockdown, which has been showing great potential in agriculture field especially for insects control, Meanwhile we notice that many weeds are the hosts or intermediate hosts of pests. Based on these two observations, we are aimed at using synthetic biology to control weeds and pests at the same time. We selected model organism Arabidopsis as basic plant verification system which has clear genetic background and field pests Aphidoidea are chosen to be discussed as well in our experiment.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Lethbridge</h2> <ul> <li><b> Region:  </b>North America - Canada</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 4-224 </li> <li><b> Presentation: </b>Friday - Room 306 - 1:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Lethbridge'>Next vivo: Cell-Free Synthetic Biology for the Masses</a> <br>We aim to develop a standardized, modular, and open-source ex vivo transcription and translation (TX/TL) system available for research and teaching communities worldwide. Ex vivo systems provide several advantages to cell-based platforms, including: simple input and output, non-proliferation, precise control of molecular interactions, and incorporation of unnatural amino acids. Thus, ex vivo systems are highly useful tools in making synthetic biology accessible to novices, providing enthusiasts with inexpensive cell-free synthesis, and empowering experts with modular control over robust expression systems. With our end-users in mind, we have designed, modelled, and built a plasmid-based multi-protein parts collection for the stoichiometric expression of all required biomachinery for coupled TX/TL reactions, as well as a novel purification method that makes these parts readily available from an inexpensive single-step elution. Lastly, we have created a software tool to preempt biosecurity challenges associated with genetic recoding in ex vivo systems.</p></div>
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<div class='column half_size'> <h2>Lethbridge HS</h2> <ul> <li><b> Region:  </b>North America - Canada</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 2-129 </li> <li><b> Presentation: </b>Saturday - Room 304 - 1:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Lethbridge HS'>SynthetINK: environmentally friendly pigment production</a> <br>Printer ink is a commodity that is used on a daily basis. The current pigments used to colour conventional inks are environmentally harmful to produce. Our goal is to produce biological pigments by putting the biosynthesis pathway genes encoding for black, cyan, magenta, and yellow pigments into Escherichia coli. Using synthetic biology to produce pigments may provide a cleaner and safer alternative to conventional pigment manufacturing. Costs of manufacturing methods can be compared and pigment production yields can be modeled mathematically. Pigments purified from bacteria are combined with a solvent and resin to create an ink mixture. Consultation with potential stakeholders indicated that pigments and inks produced by this method would need to be tested for bleaching, bleeding and colour consistency, among other characteristics. Additional human practices include analyzing the environmental impact of standard pigment production versus bacterial production and presenting iGEM and STEAM initiatives to members of our community.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Linkoping Sweden</h2> <ul> <li><b> Region:  </b>Europe - Sweden</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Manufacturing</li><li><b> Poster: </b> Zone 1-15 </li> <li><b> Presentation: </b>Sunday - Room 304 - 10:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Linkoping Sweden'>Forgetful Folding</a> <br>Aggregation prone peptides, such as Amyloid Beta and Tau which are found in Alzheimer's disease tend to form plaque and tangles in the brain. Proteins known as chaperones can help these peptides in the folding process and hinder aggregation. The four chaperones called GroEL, GroES, DnaK and Trigger Factor are going to be studied, both on their own and in different combinations. These chaperones will be overexpressed in Escherichia coli together with Tau and Amyloid Beta fused with the fluorescent proteins eGFP and mNeonGreen. These fusion proteins will also be expressed in different conditions where parameters such as temperature, expression time and induction strength is varied.</p></div>
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<div class='column half_size'> <h2>LUBBOCK TTU</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Open Track</li><li><b> Poster: </b> Zone 3-180 </li> <li><b> Presentation: </b>Saturday - Ballroom B - 2:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:LUBBOCK TTU'>Characterization and Standardization of a Thermal Actuator and Calcium-Sensitive Reporter in Saccharomyces cerevisiae.</a> <br>The most commonly used input signals in iGEM generally include chemicals and light. Temperature-based input signals are not used as frequently and remain a reservoir of potential for future synthetic biology tools. Our project explores the characterization and standardization of thermosensitive ion channels, known as TRPV1, to function as a thermal actuator and regulate calcium-sensitive gene expression in Saccharomyces cerevisiae. At the activation temperature, gating of the thermal actuator allows for an influx of extracellular calcium ions, which initiate the calmodulin-calcineurin signaling pathway, and promote the expression of genes regulated by Crz1p-sensitive promoters. The characterization of the thermal actuator was conducted in S. cerevisiae because yeast offers an accessible eukaryotic chassis for other iGEM teams to work with. By varying the temperature, the thermal actuator can be used to control genetic circuits that function as temperature-sensitive kill switches, drug delivery devices, or biosensors.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Lund</h2> <ul> <li><b> Region:  </b>Europe - Sweden</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 1-70 </li> <li><b> Presentation: </b>Sunday - Room 306 - 11:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Lund'>Construction of a tripartite split-GFP biosensor for detection of microplastics</a> <br>In light of the recent discussions regarding the realisation of the UN development goal number 14 concerning the conservation and sustainable use of marine resources, iGEM Lund has set out to aid in the world-wide engagement against microplastic pollution. Microplastic pollution is an ever-growing problem that stems from wasteful lifestyles with propagating adverse effects throughout the entire food chain. Upwards of 10 million metric tons of plastic has been estimated to enter the ocean every year. Participating in the iGEM competition for the first time, team Lund intends to rapidly and accurately determine the presence of microplastics through the design and implementation of a genetic circuit into E. coli. A logic AND-gate will be constructed utilising the conformational change of a heterologously expressed hER-alpha to associate a split fluorescent reporter.</p></div>
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<div class='column half_size'> <h2>Macquarie Australia</h2> <ul> <li><b> Region:  </b>Asia - Australia</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Energy</li><li><b> Poster: </b> Zone 5-284 </li> <li><b> Presentation: </b>Sunday - Room 304 - 11:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Macquarie Australia'>HydroGEM - Producers of Pollution-Free Energy</a> <br>To seek a clean and sustainable fuel resource, we sought to imitate the most efficient natural mechanism for the transduction of energy - photosynthesis. By engineering the photosynthesis system into E.coli, 'green' hydrogen fuel can be produced simply from sunlight and water. To do this, we focused on the assembly of the hydrogenase enzyme complex, the final component of the photosynthesis pathway. We successfully added an [FeFe] Hydrogenase enzyme, from Chlamydomonas reinhardtii, ferredoxin, ferredoxin NADP+ reductase (FNR) and maturation enzymes (HydEFG), which together, work cohesively to produce our desired 'green' hydrogen gas product. Our modeling and human practice approaches provided an assessment of the viability of the production of hydrogen on an industrial scale. We have also developed strategies to educate future generations about the potential applications of synthetic biology for providing alternative green energy solutions which can address the global energy crisis.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Manchester</h2> <ul> <li><b> Region:  </b>Europe - United Kingdom</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 1-77 </li> <li><b> Presentation: </b>Sunday - Room 311 - 10:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Manchester'>Phosphostore</a> <br>Phosphate supplementation is essential for maximizing plant yields in many agricultural settings. However, phosphate runoff from fields often causes eutrophication, leading to the deterioration of aquatic ecosystems. Moreover phosphate rock is a finite and increasingly scarce resource. Together, these two issues suggest a closed-loop solution. IGEM Manchester aims to address this issue using a bioengineered device: Phosphostore, genetically-modified bacteria that accumulate phosphate from wastewater in protein-based microcompartments for future recycling. In interviews with a wide range of stakeholders, we explore the economic and regulatory constraints that would influence the implementation of this system in real-world water treatment plants, as well as utilize a Design of Experiments approach to design a system with the required properties (e.g. the correct shell protein ratios for proper microcompartment formation) that would make our solution feasible on a larger scale.</p></div>
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<div class='column half_size'> <h2>ManhattanCol Bronx</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Energy</li><li><b> Poster: </b> Zone 1-46 </li> <li><b> Presentation: </b>Sunday - Room 304 - 12:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:ManhattanCol Bronx'>E(lectro) coli and the GOxLDEN nANODE</a> <br>We are maximizing the efficiency of a bioanode in a three-fold approach. First, we stably express the MtrCAB operon from Shewanella oneidensis, an electric bacterium, in E. coli. MtrCAB is responsible for the production of membrane bound cytochromes and known to generate bacterial nanowires. We anticipate that the MtrCAB system will allow for an electric E. coli that produces nanowire connections between the anode and bacterium for direct electron transfer. Second, we utilize variants of the Aspergillus niger enzyme, glucose oxidase (GOx), that are engineered for stability and affinity to gold (via the addition of thiol fusion tags). Finally, we synthesized a gold nanowire anode to increase the surface area for GOx affinity, bacterial nanowire connections and electron deposition. We envision a system that utilizes each approach concurrently in an effort to increase the electron shuttling of a biofuel cell at the anode.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>McMaster II</h2> <ul> <li><b> Region:  </b>North America - Canada</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 1-26 </li> <li><b> Presentation: </b>Saturday - Room 306 - 11:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:McMaster II'>C12 Mediated Cancer Treatment: Dual Functionality as a Cytotoxic and Signalling Agent</a> <br>Current chemotherapeutic agents trigger apoptosis non-specifically and induce cell death within healthy tissues. We propose a novel therapeutic using a bacterial vector that expresses acyl-homoserine lactone C12, the Pseudomonas aeruginosa signalling molecule known to induce cancer cell apoptosis through a Bcl-2 independent pathway. Upon detection of hypoxia and low pH, known tumour microenvironment markers, C12 will be released by the bacteria containing our genetically engineered circuit to act as: (1) a cytotoxic agent that induces cancer cell death, and (2) a signalling molecule that coordinates actions between bacterial colonies. Furthermore, the quorum sensing properties of C12 have been manipulated to activate a kill mechanism that arrests bacterial growth upon destruction of the tumour and the ensuing loss of its microenvironment. Thus, we propose constructing a genetic circuit that not only removes tumours, but also self-regulates itself to mitigate the risk of bacterial infection in the absence of cancerous cells.</p></div>
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<div class='column half_size'> <h2>McMasterU</h2> <ul> <li><b> Region:  </b>North America - Canada</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Diagnostics</li><li><b> Poster: </b> Zone 2-94 </li> <li><b> Presentation: </b>Saturday - Room 304 - 12:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:McMasterU'>An RNA-cleaving fluorogenic DNAzyme probe for simple detection of bacterial pathogens</a> <br>Current point-of-care diagnostics for bacterial infections are costly, time-consuming, and offer limited strain specificity. These challenges contribute to improper antibiotic usage, accelerating the propagation of antimicrobial-resistant (AMR) bacteria. We are developing DNAzymes - catalytically active ssDNA generated via in vitro selection - to serve as inexpensive and sensitive probes for the rapid detection of AMR bacteria. In the presence of targeted strains, the DNAzyme cleaves a fluorophore-RNA-quencher motif at the RNA site, generating fluorescence. As a proof-of-concept, we have adapted a known E. coli K12 DNAzyme for use in a plate-based assay, and are generating a novel DNAzyme to detect resistant strains of C. difficile. Simultaneously, we are leveraging machine learning techniques to predict potential DNAzymes, and are developing kinetic models to describe DNAzyme behaviour. Our project addresses the need for novel approaches within AMR detection and active antimicrobial stewardship issues widely recognized by the experts in this field.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Michigan</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>New Application</li><li><b> Poster: </b> Zone 5-286 </li> <li><b> Presentation: </b>Sunday - Room 310 - 1:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Michigan'>Thermolyze: A Temperature Controlled Kill-Switch for Containment of Pathogenic Bacteria in Research Labs</a> <br>Genetically modified and/or pathogenic bacteria used in research pose a concern to the public due to the potential consequences if they escape into the environment. Efforts to address this have led to the design of bacterial kill switches: biocontainment systems pairing environmental sensing mechanisms with circuit-based control of viability. Though successful switches exist, most require specific molecular signaling mechanisms, limiting their use. We designed a temperature-controlled kill switch activated below 34C using the temperature-dependent repressor TlpA36. Bacteria are lysed by constitutively expressed holin and endolysin unless counteracted by antiholin, which is under the control of TlpA36 and therefore only expressed in a narrow temperature range. This system should function with any gram-negative bacteria. We implemented our switch in E. coli as proof of concept. Promoters of varying strengths were tested to fine-tune the time until lysis, giving researchers a buffer period to work with cells at low temperatures.</p></div>
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<div class='column half_size'> <h2>Michigan Software</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Software</li><li><b> Poster: </b> Zone 3-175 </li> <li><b> Presentation: </b>Sunday - Room 310 - 9:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Michigan Software'>ProtoCat - Collaborating Towards Success</a> <br>Choosing apt and reliable protocols for new experiments is a problem that wet labs routinely face due to the difficulty in anticipating which protocols will produce the best results. Experimental practices may differ immensely across laboratories and precise details of these practices may be lost or forgotten as skilled faculty or students leave the lab to pursue other endeavors. Furthermore, there are few well-defined protocols that are generally agreed upon by the scientific community, in part due to the lack of a system that can supply a measure of a protocol's acceptance. In order to address these problems, we set out to build a database that integrates a crowd-sourced ratings and comments system to serve as a protocol curator that enables lab investigators to compare various protocol efficacies, quantify a protocol's acceptance within the scientific community, and provide an avenue through which experiential knowledge can be communicated and shared.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Mingdao</h2> <ul> <li><b> Region:  </b>Asia - Taiwan</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 1-1 </li> <li><b> Presentation: </b>Saturday - Ballroom A - 4:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Mingdao'>Sugar Crush Probiotic-based glucose retrieval system</a> <br>According to research, in 2015, about 7 adults in 10 suffer the problem of overweight or even obesity, and it is expected that more people are going to get into this kind of unhealthy problem. One of the most major factors that lead to obesity is 'sugar', which could be easily found in beverages, dessert, and almost any kind of food. Thus, it is quite difficult not to absorb too much amount of sugar in our daily lives. In hope of preventing our bodies from absorbing too much glucose, our team aims to engineer bacteria that absorb glucose more efficiently. Our team constructed glucose active transporters on the membrane of E.coli, enabling the glucose uptake to become faster than intestine cells. On the other hand, our team has designed a suicide circuit ensuring the bacteria don't absorb all the sugar and the body can get adequate amount of sugar.</p></div>
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<div class='column half_size'> <h2>Minnesota</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 2-97 </li> <li><b> Presentation: </b>Saturday - Room 309 - 4:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Minnesota'>The Use of Cytolysin FitD Overexpression and Biocontainment Systems for the Control of Zebra Mussels</a> <br>Zebra mussels have a large impact locally in Minnesota as well as nationally. Zequanox is a new effective treatment composed of heat-killed Pseudomonas fluorescens, and it is very expensive. The Minnesota iGEM team has proposed a novel synthetic system that is based upon a toxin released by this Pseudomonas fluorescens strain, cytolysin FitD, that could be released into lakes. This designed system entails the creation of a modified Escherichia coli strain that expresses FitD and a biomolecular control system to allow for the release of live bacteria into the lake. With the continuous production of the FitD toxin, an increased number of zebra mussels will be killed, limiting the number of treatments needed. Minnesota iGEM experimented with several biocontainment strategies, including a thymidine auxotrophy system, purine auxotrophy system, SacB control system, and toxin activation system. These control mechanisms help to create robust and safe engineered biological systems for environmental applications.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Missouri Rolla</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 5-267 </li> <li><b> Presentation: </b>Sunday - Room 302 - 3:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Missouri Rolla'>Detecting groundwater and soil pollutants using plant biosensors</a> <br>Plant-based biosensors have immense benefits over analytical chemistry or potentiometric techniques because they continuously sample a large volume of the environment, provide warning to laypeople, and achieve the amazing specificity and sensitivity of biomolecules. We are developing two approaches to biosensing contaminants with plants. Both systems are based on important developments in biosensors, namely the creation of synthetic signal transduction systems in bacteria and plants and the redesign of natural periplasmic binding proteins for the detection of new ligands. Taken together, these advances could allow a computationally-designed periplasmic binding protein which binds a contaminant of interest extracellularly to transfer the signal through a phosphorylation cascade and produce a transcriptional response. We will create circuits to implement these synthetic signal transduction systems, attempt to computationally design periplasmic binding proteins for new ligands, and test the efficacy of our two biosensing approaches.</p></div>
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<div class='column half_size'> <h2>MIT</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 1-30 </li> <li><b> Presentation: </b>Sunday - Room 311 - 11:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:MIT'>Splice and Dice: Artificial Control of Alternative Splicing via RNA Binding Proteins</a> <br>Alternative splicing is the eukaryotic mechanism that selects which exons will be included in processed mRNA. It increases the diversity of the human proteome by allowing more than one protein isoform to be produced from the same gene. The inclusion or exclusion of particular exons is regulated by splicing factors which bind to specific motifs in the pre-mRNA. Our project aims to control alternative splicing by using the RNA-binding proteins dCas13a and Ms2 to interfere with these splicing factors' binding, allowing us to control which exons are included in the final processed mRNA. By choosing between different protein isoforms, this control method may allow synthetic genes to dynamically change functionality. It also has therapeutic potential for diseases that arise from aberrant splicing, including an aggressive form of breast cancer where one splice variant produces a nonfunctional tumor suppressor, contributing to tumor formation.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Moscow RF</h2> <ul> <li><b> Region:  </b>Europe - Russian Federation</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Food & Nutrition</li><li><b> Poster: </b> Zone 2-104 </li> <li><b> Presentation: </b>Saturday - Room 309 - 2:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Moscow RF'>Phytases piggy bank</a> <br>The project is aimed at solving the problem of thermal destruction of phytase of Citrobacter braakii during production of granulated compound feeds for farm animals. As producers serving as capsules for phytase molecules and protecting them from high temperatures we will use Yarrowia lipolytica. In order to protect phytase from degradation when affected by enzymes of yeast cells we will modify the protein attaching another protein phytochelatin to one of the ends of the protein chain. Phytochelatin has a very stable and compact structure resistant to yeast enzymes and will serve as a barrier between phytase and such destructive enzymes.</p></div>
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<div class='column half_size'> <h2>MSU-Michigan</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 1-36 </li> <li><b> Presentation: </b>Sunday - Ballroom A - 1:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:MSU-Michigan'>Biosensing Water Contaminants with Genetically Engineered Shewanella oneidensis MR-1 using Single-Chambered Bioelectrochemical Systems</a> <br>Pollutants in fresh water such as pharmaceuticals, hormones and heavy metals are rarely monitored and the need to detect and remove these compounds in an inexpensive way is what motivates this project. The marine bacterium Shewanella oneidensis MR-1 could be a part of the solution through its unique ability to transport electrons to an external acceptor such as an anode through its external electron transport chain (Mtr pathway). This can be utilized in bioelectrochemical systems to make a biosensor by removing the mtrB gene which allows electricity production then turning this gene back on in the presence of water contaminants. This biosensor will be engineered to be manufactured on a large scale to be used for research, education, humanitarian efforts and even consumer use. Although the proof of concept is currently tested in a single chambered bioelectrochemical system, an affordable and portable paper microbial fuel cell system is being developed.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Munich</h2> <ul> <li><b> Region:  </b>Europe - Germany</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Diagnostics</li><li><b> Poster: </b> Zone 2-150 </li> <li><b> Presentation: </b>Sunday - Room 312 - 3:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Munich'>CascAID ( Cas13a Controlled Assay for Infectious Diseases )</a> <br>The ongoing crisis of increasing antibiotic resistance demands innovative preventive strategies. Recently, the RNA-targeting protein CRISPR-Cas13a has been used for highly sensitive DNA and RNA detection, promising diverse applications in point-of-care diagnostics. We integrated Cas13a in the detection unit of CascAID, our GMO-free diagnostic platform. CascAID combines an automated microfluidic device for rapid lysis and extraction of nucleic acids with a paper-based readout system. We demonstrated the performance of our device by targeting the 16S RNA from E. coli. We improved the detection limit of our platform, using simulations to optimize our amplification scheme and the final readout. Conceived as a distributable platform for rapid point-of-care diagnostics, CascAID can be used to distinguish between bacterial and viral infections, thus minimizing the widespread use of antibiotics. Furthermore, Cas13a allows the fast design of target sequences, making our system adaptive to the emergence of new viral outbreaks or fast mutating pathogens.</p></div>
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<div class='column half_size'> <h2>Nagahama</h2> <ul> <li><b> Region:  </b>Asia - Japan</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Food & Nutrition</li><li><b> Poster: </b> Zone 2-168 </li> <li><b> Presentation: </b>Friday - Room 309 - 12:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Nagahama'>Design of nutritious food based on 'Funazushi'</a> <br>Our team wants to make nutritious foods that can be stored for a long time to help people suffering from hunger. Starvation is caused by the fact that not only calories but also nutrients such as protein are short. Therefore, we propose nutritious food that can be stored for a long time by fermentation mainly using fish which is a protein source which does not cost money to raise. We focused on the fermented food called Funazushi which rooted in the area where we live in. We will develop nutritious food by recombining yeast which was dominant species of Funazushi and making yeast produces nutrients lacking in the area. Because Funazushi is high salt concentration and low pH state during fermentation ,we will try to create yeast which make necessary nutrients for nation which is troubled by starvation while have resistance to high salt concentration and low pH.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Nanjing NFLS</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 5-280 </li> <li><b> Presentation: </b>Sunday - Room 310 - 11:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Nanjing NFLS'>Fortified Aniline Killer - the Identification, Recombination, and Verification of Aniline Compound Degradation Genes</a> <br>The biodegradation solution to toxic substances in the environment has received general consent and considerable attention. Our project aims at the biodegradation of toxic aniline and its compounds (a type of chemical raw material and the intermediate metabolite of aniline herbicides). Currently the spectrum for aniline biodegradation genes is too narrow to effectively recover polluted soil and waterbody environments. Based on previously discovered relevant genes, we attempt to search for crucial genes for aniline degradation in Acinetobacter sp. strain YAA, and perform gene recombination and expression, meanwhile construct recombinant genetic engineering bacteria, and test the bioremediation effects in contaminated waterbodies and soil samples. Results show that recombined target gene could efficiently express in E. coli, and that the engineered bacteria acquired from three-parent hybridization express a wider range of substrate spectrum, thus laying the foundation for further bioremediation research.</p></div>
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<div class='column half_size'> <h2>Nanjing-China</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 5-269 </li> <li><b> Presentation: </b>Friday - Ballroom A - 4:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Nanjing-China'>Three Microbial Whole-Cell Sensing Systems to Detect Gas Molecules in the Environment</a> <br>Formaldehyde, hydrogen sulfide and hydrogen pose great danger to our lives. Traditional methods for detecting them are mainly based on irreversible redox reactions in expensive devices with short life spans, whereas whole-cell bacterial biosensors have major advantages over traditional analyses with regard to specificity, sensitivity and portability. We attempt to develop whole-cell systems detecting these gases. We have managed to transfer gene clusters encoding translational suppressors or activator into E. coli to respond to different gas molecules by up regulation of specific downstream genes. In order to visualize the gases' existence and concentration, FP genes are inserted in the expression system after the promoter influenced by the suppressor or activator. At present, results have shown sensibility at a µM level. As long as proper containers are designed, we will be able to construct portable sensors by which users can perform instant on-site monitoring with higher sensitivity, stability but lower costs.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>NAU-CHINA</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Food & Nutrition</li><li><b> Poster: </b> Zone 5-258 </li> <li><b> Presentation: </b>Saturday - Room 309 - 1:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:NAU-CHINA'>Wheat Guard system</a> <br>Fusarium head blight(FHB)is one of the most destructive global disease of cereal,which poses a significant threat to the wheat production and the safety of food. Fusarium Graminearum predominates among several Fusarium species that can cause FHB. Deoxynivalenol (DON) and zearalenone (ZEN) compounds, produced by Fusarium that are common contaminants which pose a threat to human and animal health. So the main purpose of our project is to prevent FHB,not only inhibit growth of the F. graminearum,but also degrade DON and ZEN . We choose to have mass production of biological pesticidesantifungal peptide using yeast system and engineer Yeast-based biosensor to detect. Considering biosafety,our project also includes a kill switch, which is responsible for preventing gene contamination. The mammalian Bax protein will confer a lethal phenotype when expressed in yeast. This reassures that the yeast removes itself when it was exposed to the environment.</p></div>
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<div class='column half_size'> <h2>NAWI Graz</h2> <ul> <li><b> Region:  </b>Europe - Austria</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Information Processing</li><li><b> Poster: </b> Zone 2-91 </li> <li><b> Presentation: </b>Saturday - Room 310 - 4:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:NAWI Graz'>ColiBot a robot-bacteria interface</a> <br>The aim of project 'ColiBot' is to create a robot-bacteria interface in which information processing is done by a bacterial culture that forms a feedback loop with a mobile robot. Escherichia coli is cultivated in a bioreactor, which provides stable conditions. Communication from bacterial cells to robot, the output signal, is achieved by fluorescence proteins. The expression of those proteins is influenced by certain environmental conditions. For measurement, a small culture sample will be transported through a modular system to a measurement chamber that detects the fluorescence wavelengths of the culture. This procedure is repeated over and over again, while the robot moves accordingly through an arena. Our first approach of this project is based on thermosensitive bacteria for information processing. Until now, this project already shows satisfactory results. Now, we are primary focusing on the second part of our project, trying to achieve information processing by pH shift.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>NCKU Tainan</h2> <ul> <li><b> Region:  </b>Asia - Taiwan</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 5-290 </li> <li><b> Presentation: </b>Sunday - Ballroom A - 2:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:NCKU Tainan'>NO Problem- A Biological Approach to Nitrate Sensing and Regulation</a> <br>Aquaculture is expected to become major fishery consumption for human upon the depletion of ocean resources, and to reach USD 202 billions by 2020 in a commercial sight. Keeping water unpolluted is crucial to aquaculture industry, with Nitrate the main target when monitoring water condition. Nevertheless, as to control its concentration, changing water continuously, the most common and affordable way for fish-farmers, is undoubtedly a burden for earth. So how to make monitoring and controlling of Nitrate inexpensive, precisely sensitive and with less manpower? Now, NCKU_Tainan brings a new idea 'NO Problem: A Biological Approach to Nitrate Sensing and Regulation.' With a plasmid composed of PyeaR promoter and GFP for nitrate sensing, genes constructed for four enzymes by which Nitrate transformed into glutamine, a harmless and valuable amino acid and our own device for both sensing and regulation process, we turn traditional aquaculture into a sustainable industry.</p></div>
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<div class='column half_size'> <h2>NCTU Formosa</h2> <ul> <li><b> Region:  </b>Asia - Taiwan</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Software</li><li><b> Poster: </b> Zone 3-184 </li> <li><b> Presentation: </b>Friday - Room 312 - 11:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:NCTU Formosa'>Parabase A Simple and Applicable Peptide Prediction System with Validation of Artificial Intelligence</a> <br>In the era of explosive information, the power of using a huge quantity of information is pivotal, so comes in the genesis of Parabase, which integrates A.I. based on Scoring Card Method into databases to achieve drug repurposing by the cross match of collection data and the quick prediction of the unknown in vast data sets. The system can be highly applicable in different topics, and we take fungal diseases for example. We have discovered new antifungal peptides and done experiments to validate their functions. After the antifungal peptides are set, IoT then gathers weather information responsible for the changing situation of reality and tallies out the spore germination prediction model. With the Parabase system composed of Database and IoT, farmers can easily opt for the antifungal peptides to eradicate the pathogens and the exact spraying timing.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>NEFU China</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 2-152 </li> <li><b> Presentation: </b>Friday - Ballroom B - 11:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:NEFU China'>Coordinated Grease Eraser: Build a microbial trap for grease</a> <br>Civil sewage contains enriched grease with low biodegradability. To develop a novel approach for grease treatment, we designed a microbial cooperation system based on serine-mediated attraction and leucine-mediated repellent of bacteria. Our system consists of 3 Leaders (LA, LB, LC) and 2 Followers (FD, FE) that are engineered microorganisms. LA inducibly secretes serine, LB constitutively secretes leucine, and LC makes acyl-CoA synthetase long chain (ACSL) to metabolize fatty acids. Serine and leucine produced by Leaders can attract or repel FD/FE, respectively. FD secretes lipase to dissolve sewage grease into fatty acids and FE expresses a fatty acid binding protein on its membrane to carry fatty acids. When Followers are attracted to Leaders, a fatty acid-enriched microenvironment can be built to let ACSL from LC metabolize fatty acids. Thus, we developed a novel grease-degrading system consisting of differentially engineered microbial groups, similar to an assembly line in a human society.</p></div>
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<div class='column half_size'> <h2>NEU-China</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Diagnostics</li><li><b> Poster: </b> Zone 4-251 </li> <li><b> Presentation: </b>Friday - Room 310 - 2:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:NEU-China'>iSmeller: An intensified cellular odor sensor system based on CRISPR activation technology</a> <br>Odor molecule can be sensed via the specific binding with its cognate olfactory receptors and the following elicited signaling cascade within the cell. Our research aims to build a mammalian cell-based biological odor detection system (iSmeller, intensified Smeller) with enhanced sensitivity by employing the CRISPR/Cas9 activation technology. Once an odor binds to the specific olfactory receptors on the cell membrane, it leads to a series of signaling rally and consequently generates a flux of cAMP (cyclic AMP) which could be detected by a cAMP-activated reporter gene system. We implement CRISPR activation apparatus to simultaneously amplify several core components endogenously along the olfactory signal cascade to enhance power and sensitivity of the cellular odor sensor. We will evaluate the performance of iSmeller with two odor/receptor pairs: β-citronellol/OR1A1 and bourgeonal/OR1D2. The iSmeller holds great promise in various applications such as cancer diagnosis, environmental pollution evaluation and food quality control.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Newcastle</h2> <ul> <li><b> Region:  </b>Europe - United Kingdom</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 1-78 </li> <li><b> Presentation: </b>Sunday - Room 309 - 9:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Newcastle'>Sensynova - a new era of biosensors</a> <br>Biosensor applications are wide-reaching, but their development is complex, inefficient, and uptake limited. We propose a new foundational paradigm for biosensor development; a modular, multicellular development platform, Sensynova. Biosensor designs were reviewed, identifying design-patterns of commonly used subcomponents and configurations. Separating biosensor subcomponents as modules, in different bacterial cells, promotes 'off-the-shelf' reuse. New sensors are developed simply by mixing proportions of these cells which communicate using small molecules. A synthetic biology dialogue helped derive designs for new modules (adaptors, detectors, processors, and reporters), and a proof-of-concept system. Cell-free, automation, developer requirements, target-specific knowledge, robustness, legislation, and end-user uptake were also investigated.</p></div>
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<div class='column half_size'> <h2>NIPER-Guwahati</h2> <ul> <li><b> Region:  </b>Asia - India</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 1-62 </li> <li><b> Presentation: </b>Sunday - Room 302 - 12:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:NIPER-Guwahati'>Development of synthetic Bio-conjugates for targeted down-regulation of Oncogenes.</a> <br>Our iGEM-2018 work involves evolution of Bcl-2 mRNA-binding peptides and DNAzymes for Bcl-2 mRNA cleaving activity, which can eventually down regulate the expression of Bcl-2 anti-apoptotic protein in a very specific manner. The second part of the project is to evolve cell permeating peptides specific for skin cancer cells (A375) through phage-surface display random peptide library. We will eventually fuse the novel Bcl-2 mRNA binding peptides and mRNA cleaving DNAzymes with Cell-specific Cell Permeating Peptides (CPPs) to develop Bioconjugates which can target cancer cell through the CPP and inhibit the Bcl-2 protein expression through the novel Bcl-2 mRNA binding peptide and mRNA cleaving DNAzyme to induce apoptosis of the cancer cells. The work has a special significance as we try to boost the global efforts of developing 'Complete' Drug molecules/Bio-pharmaceuticals; which can inhibit the target (Drug Action), guided by a CPP to Deliver the Oncogene-Inhibitor inside Cancer cells (Drug Delivery).</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>NJU-China</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 2-132 </li> <li><b> Presentation: </b>Saturday - Room 310 - 9:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:NJU-China'>FFF(free from fat)</a> <br>Obesity has become increasingly disturbing and common these years. However, a perfect treatment of obesity has not appeared so far. The goal of our project is to develop a strategy to treat obesity, with building a transplantable system targeting a specific molecule that functions in white fat tissue. We packed siRNA into exosomes (nano-sized vesicles secreted by human cells). Then we modified our exosome with a certain peptide to act as white-fat-tissue-specific targeting tool. The siRNA will function to bring out the apoptosis of fat tissue. Our validation experiments will be carried out at the level of cells and animals (mice) to prove both the targeting and function of siRNA. Eventually, we expect to see a specific accumulation of the siRNA in the mice's white fat tissue and the decrease of mice's fat and their weights. This project may provide new insights into future treatment of obesity.</p></div>
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<div class='column half_size'> <h2>NKU China</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Energy</li><li><b> Poster: </b> Zone 4-237 </li> <li><b> Presentation: </b>Saturday - Ballroom A - 2:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:NKU China'>Traffic Police in the Reservoir -- engineered microbes that control water flooding</a> <br>In the process of oil recovery by water injection, large water channels will be formed. Water mainly flows through these channels, avoiding brushing the oil stuck in the minor channels, so that the oil remains unexplored. Our project is aiming to engineer Enterobacter sp. FY-07 (which is separated from oilfield produced water and able to produce cellulose in anaerobic conditions) using toggle switch, so as to produce rhamnolipid and cellulose in an controllable way. The engineered Enterobacter sp. FY-07 acts as the traffic police controlling the oil flux. In large channels, cellulose is produced to clog the flowing water and help it enter into the minor channels and wash out the oil within them. In minor channels, rhamnolipid is produced to emulsify oil, so the oil can be easily washed out. Our project aims at improving oil recovery rate in the oil harvesting process using the engineered bacteria.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>NortheasternU-Boston</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 1-74 </li> <li><b> Presentation: </b>Saturday - Room 306 - 4:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:NortheasternU-Boston'>Expansion of Cell-Free Manufacturing with Post-Translational Modification</a> <br>Production of recombinant proteins has enabled or improved the treatment of numerous diseases including anemia, diabetes, and cystic fibrosis. However, recombinant protein production requires industrial infrastructure and the biologics produced in this manner typically have stringent storage requirements, including refrigeration. Many areas of the world lack infrastructure for local production or cold-chain infrastructure for effective delivery of recombinant proteins. Cell-free manufacturing based on freeze dried protein expression reaction pellets may be a solution. These pellets contain the molecular machinery to manufacture proteins and can withstand variations in temperature and humidity. Cell-free expression in this context has limited ability to produce complex proteins. Our project uses anti-microbial peptides as model molecules in order to characterize limits of cell-free expression of functional molecules. We then attempt to expand the production of functional molecules by introducing proteins for post-translational modification of expressed anti-microbial peptides to rescue functionality and demonstrate improved cell-free expression.</p></div>
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<div class='column half_size'> <h2>Northwestern</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 4-250 </li> <li><b> Presentation: </b>Saturday - Room 302 - 4:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Northwestern'>VesiCure: Designing pathways for integrating functional Cas9 protein into outer membrane vesicles</a> <br>Inappropriate use of antibiotics has escalated the growing problem of antibiotic resistance in many threatening diseases. In 2014, the World Health Organization classified antibiotic resistance as a global epidemic. Inactivating resistance genes via Cas9 nuclease-mediated cleavage has been shown to be an effective means of combating this epidemic; however, methods of in vivo delivery are currently limited. Our team aims to deliver Cas9 to antibiotic-resistant, pathogenic bacteria through submicron bacterial outer membrane vesicles (OMVs) as a companion re-sensitization therapeutic to antibiotic treatment. OMVs are naturally produced by all Gram-negative bacteria and are used for crosstalk, stress responses, and nutrient acquisition. Their ability to be modified and directed with relative ease makes them an ideal carrier of CRISPR-Cas9. Aiding conventional antibiotic treatment, our technology will model a complete protein delivery system and transport functional Cas9 to target cells.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>NPU-China</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Manufacturing</li><li><b> Poster: </b> Zone 1-42 </li> <li><b> Presentation: </b>Saturday - Room 312 - 2:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:NPU-China'>Glycerol-based Acrylic Acid Cell Factory</a> <br>Acrylic acid is a bulk chemical raw material,whose excellent polymerization capacity is widely used in many fields.This year, we chose to use glycerol as carbon source to achieve the all green production of acrylic acid. Based on the core enzyme Ceas2, high-yield acrylic acid cell factory was built through the Part,Pathway,System and Process. We designed the Ceas2 mutant by utilizing the AEMD platform. HPLC and HTS techniques were applied in screening for Ceas2 mutants of high catalytic efficiency.We devised GDC pathway, achieving complete synthesis from glycerol to acrylic acid. In addition, we add a reduction power module for this pathway.We constructed a new pathway in E. coli and S. cerevisiae respectively,and after prediction via metabolic flux modeling,we optimized the cell metabolism by using the RED and CRISPR-Cas9 technique. The cell production process was hereby bolstered by optimizing the fermentation process and screening the carbon source,Buffer,temperature,pH and other experimental conditions.</p></div>
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<div class='column half_size'> <h2>NTHU Taiwan</h2> <ul> <li><b> Region:  </b>Asia - Taiwan</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 2-157 </li> <li><b> Presentation: </b>Friday - Room 309 - 1:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:NTHU Taiwan'>EDCs Terminator</a> <br>This year, our goal is to build a system that can detect and degrade EDCs. In many developing countries, factories spew toxic water into rivers, and farmers nearby may accidentally utilize it. EDCs can interfere with endocrine systems, causing harmful effect on organisms. In our project, we focus on two common kinds of EDCs, BPA and NP. For detection, we modified E.coli to express EDC receptor, ERα and GFP. Next, we assembled monobodies on gold surface. We can measure the fluorescent intensity of GFP or information of SPR via interaction between ERα and monobody, thus estimate the concentration of EDCs. For degradation, we modified E.coli to produce target enzymes which can degrade BPA and NP. We integrated target enzymes with activated carbon and bioreactor system to eliminate EDCs. In conclusion, our project aims to solve water safety issue for farmers in developing countries and create a more healthy agricultural environment.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>NTNU Trondheim</h2> <ul> <li><b> Region:  </b>Europe - Norway</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 1-63 </li> <li><b> Presentation: </b>Saturday - Room 306 - 12:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:NTNU Trondheim'>Phage Age: Combating antibiotic resistant bacteria through bacteriophage mutation and selection</a> <br>Antibiotic resistance is poised to become one of the greatest dangers of our time. Widespread overuse of antibiotics coupled with minimal investment in new treatments have allowed pathogenic bacteria to develop resistances to many antibiotics. Our team sought to develop a platform that utilizes genetically modified E. coli DH5α to quickly evolve bacteriophages (phages). These phages should be capable of infecting the target bacteria in our coupled chemostat system. We have created a cheap, fast and simple system as well as a mathematical model for understanding its regulation. Photosensors capable of measuring real-time concentration of bacteria and phages were constructed. A plasmid to increase the mutation rate of host bacteria and thus also of invasive phages was designed. Additionally, a protocol for selecting and purifying phages from environmental samples has been developed by our team.</p></div>
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<div class='column half_size'> <h2>NTU SINGAPORE</h2> <ul> <li><b> Region:  </b>Asia - Singapore</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 1-38 </li> <li><b> Presentation: </b>Friday - Room 312 - 4:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:NTU SINGAPORE'>Improving CRISPR-Cas-based technologies</a> <br>The CRISPR-Cas system is a wonderful tool for mankind to manipulate the genetic code of an organism. Originally functioning as bacterial adaptive immune systems, CRISPR-Cas-based technologies have been extensively studied and improved upon in recent years. Our team is interested in overcoming current limitations of CRISPR-Cas technologies, which may hinder their efficiency and deployment in living cells and organisms. There are three projects that we are working on. First, we are interested in enhancing the efficiency of HDR repair, which is utilized by scientists to precisely edit certain genes of their interest, by fusing the Cas9 enzyme with a HDR protein. Second, we are trying to deploy the enhanced design to correct a non-small-cell lung cancer mutation. Third, we are optimizing the dCas9 DNA-targeting scaffold by exploring potential deletions and introducing several mutations that will render it to be more compact and better than the traditional dCas9.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>NU Kazakhstan</h2> <ul> <li><b> Region:  </b>Asia - Kazakhstan</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 5-260 </li> <li><b> Presentation: </b>Sunday - Room 306 - 12:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:NU Kazakhstan'>Bioremediation of hexavalent chromium</a> <br>Chromium is a well-known toxin and carcinogen with wide industrial use. Pollution with chromium is a serious environmental concern in Kazakhstan since it is the 2nd largest chromium manufacturer in the world. Chromium primarily exists in two redox forms: trivalent and hexavalent. The former is poorly soluble and less toxic compared to the latter form. Hexavalent chromium is bioavailable and readily crosses membranes through sulfate transporters. The goal of our project is to collect Cr(VI) from wastewater, reduce it to trivalent form and store inside the microalgae C.reinhardtii. We are introducing chromate reductase which converts Cr(VI) to Cr(III) and oligopeptide chromodulin which tightly binds 4 Cr(III) ions. To increase chromate uptake into the cell, we are exploiting natural ability of C.reinhardtii to upregulate sulfate channels when starved from sulfur. Our safety system is represented by photosensitizing protein SuperNova. It generates ROS when exposed to 585 nm wavelength of light.</p></div>
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<div class='column half_size'> <h2>NUDT CHINA</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 4-249 </li> <li><b> Presentation: </b>Sunday - Room 310 - 3:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:NUDT CHINA'>MiRNA Locker: A Modularized DNA Assembly As miRNA Inhibitors</a> <br>Nowadays, sequence-specific microRNA (miRNA) inhibitors have been extensively demanded in miRNA loss-of-function studies and gene therapies, whereas current developed inhibitors still suffer from high cost and poor scalability. Seen new approaches needed, our project attempts to demonstrate a novel design of miRNA inhibitor, named as miRNA locker, which can be easily assembled using modularized DNA parts from a set of chemically synthetic oligo DNA library. The microRNA lockers we assembled were proven to be able to bind miRNAs in an Ago2 dependent manner, and were able to trigger gene expression and phenotypic changes consistent to commercialized miRNA inhibitors while decreasing costs significantly. We also demonstrate a computer-aided designing software to facilitate the lockers design and optimization. With its unique advantage and potential on multi-targeting and convenience, we believe that our design might provide an alternative approach for miRNA inhibiting for research, diagnostic and therapeutic uses.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>NUS Singapore</h2> <ul> <li><b> Region:  </b>Asia - Singapore</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 2-159 </li> <li><b> Presentation: </b>Saturday - Room 302 - 11:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:NUS Singapore'>Making engineering of customised kill switches easier!</a> <br>Many SynBio groups are engineering microbes that could one day be useful in detecting diseases, fighting cancer and monitoring heavy metals in rivers. However, engineered microbes may leak into non-designated environment, posing threats to our natural ecosystem. This is a major hurdle towards the commercialization of engineered microbes. To address this, we need effective kill switches to prevent engineered microbes from escaping into the environment. However, existing kill switches have limitations and, more importantly, it is difficult to readily tailor make kill switches for different applications. Team NUSgem aims to make engineering of customised, effective kill switches easier. To this end, we are developing a library of characterized sensors, a killing and verification module which can be used in a computer aided design tool (e.g., Cello) and can be readily modelled. As a proof of concept, we focus on developing kill switch for engineered probiotics for human health.</p></div>
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<div class='column half_size'> <h2>NWU-CHINA</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 5-274 </li> <li><b> Presentation: </b>Friday - Room 311 - 4:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:NWU-CHINA'>Alkane Biosensor</a> <br>Our project for this year is developing a biosensor for alkane. As present methods dealing with oil spill cannot meet the requirement of environmental recovery, our team think that the best way solving oil spill problem is preventing it. We separated oil degradation bacteria from areas contaminated by oil, then we confirmed this bacteria is Pseudomonas aeruginosa strain by measuring its 16S rRNA and named it DN1. For oil degradation is an alternative metabolic pathway in bacteria, there is a manipulator for oil degradation gene, such as GntR. It codes GntR protein, which can bind with promoter on upstream of alkB2. When alkane exists, GntR will unbind with the promoter, and the RFP gene we added on downstream will express to show a signal. We used P.a DN1 and DH5α as our chassis to explore which bacteria will be a better chassis for our device.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>NYMU-Taipei</h2> <ul> <li><b> Region:  </b>Asia - Taiwan</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Energy</li><li><b> Poster: </b> Zone 1-16 </li> <li><b> Presentation: </b>Friday - Ballroom B - 9:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:NYMU-Taipei'>Smart AlgaEnergy</a> <br>Facing the threatening energy crisis, scientists are craving for alternative energy sources. Taking both clean energy productivity and other factors under consideration, we have decided to target our project on increasing the oil accumulation in microalgae by multiple approaches. On the one hand, we have determined to make microalgae undergo nitrogen starvation to increase its oil accumulation by creating a co-culturing system of microalgae and NrtA-transformed Escherichia coli that can deprive microalgae of nitrogen source. On the other hand, we have changed the color of microalgae by transforming pigmentation functions from other species into microalgae cells to enhance its efficiency of photosynthesis. By combining these two approaches, we can develop a new intelligent system which can enhance bio-energy production and contribute to the needs of renewable clean energy.</p></div>
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<div class='column half_size'> <h2>NYU Abu Dhabi</h2> <ul> <li><b> Region:  </b>Asia - United Arab Emirates</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Diagnostics</li><li><b> Poster: </b> Zone 2-114 </li> <li><b> Presentation: </b>Sunday - Room 302 - 9:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:NYU Abu Dhabi'>E. coLAMP: A portable device for rapid detection of Shiga toxin-producing Escherichia coli</a> <br>Shiga toxin-producing Escherichia coli (STEC) is one of the leading causes of food-borne illnesses. Shiga toxin's mode of action involves the inhibition of protein synthesis, consequently leading to cell death. While most countries have stringent food safety regulations to prevent the sale of contaminated foods, small scale manufacturers often do not have the access, time, or resources to ensure the safety of their food. Therefore, the aim of this project was to design a cost-effective, portable device that can readily detect the presence of STEC. The device functions by lysing the bacterial cell wall and amplifying a STEC-specific gene sequence using loop-mediated isothermal amplification. It is envisioned that the use of this device in the developing world would be an effective means of reducing the incidence of food-borne illnesses.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>NYU Shanghai</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Food & Nutrition</li><li><b> Poster: </b> Zone 4-210 </li> <li><b> Presentation: </b>Friday - Room 309 - 11:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:NYU Shanghai'>Methyltransferase-1-Mediated Consumption of Methanol in Fake Alcohol</a> <br>In China and Europe, substitutes for drinking alcohol, known as fake alcohol, have caused dangerous health effects in the community. One such substitute is methanol, known to cause blindness and/or death. The methyltransferase pathway exists in Methanosarcina Acetivorans, converting methanol into methane. By taking advantage of this pathway and two of its essential component, mtaB and corrinoid protein mtaC, methanol may be reduced in fake alcohol solution without affecting the concentration of ethanol. Since methane is a greenhouse gas, we stopped the biological pathway halfway at its intermediate methyl-mtaC. After transforming mtaB and mtaC into DH5α strain of E.coli, the effectiveness of the pathway remained undetermined due to limitations of our gas chromatography equipment and to large fluctuations in our magenta sulfite colorimetric results. Further tests, including clonogenic assay and fluorescence counterstaining, suggest that the possibility of the E.coli being unable to survive in methanol could be ruled out.</p></div>
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<div class='column half_size'> <h2>OUC-China</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 3-200 </li> <li><b> Presentation: </b>Saturday - Room 310 - 11:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:OUC-China'>A bottle of algae Wine</a> <br>Algae Outbreak is a serious marine disaster for ocean life, which threatens economic interests and health of human. The periodically outbreak of Enteromorpha on the coastline has been a stubborn environmental problem in ShanDong, China. Here, we aim to utilize the cellobiose and xylose from waste algae and turn them into ethanol as healthy and tasty algae wine with resveratrol. Additionally, we achieved a new synthetic biology platform for artificial interspecific cooperation. E.coli and S. cerevisiae are engineered to organize together as multi-cell device. The co-cultured E. coli works as surface-display system of S. cerevisiae for enhancing its biological function. Simultaneously, we built a mini transcriptional unit of standardized promoters and terminators with concise structure in Yeast, providing more potential for large-scale SynBio operations. Our project can contribute to local environmental issue and enrich synthetic biology toolbox by novel interspecific cooperation platform and transcription regulatory elements.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Oxford</h2> <ul> <li><b> Region:  </b>Europe - United Kingdom</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Diagnostics</li><li><b> Poster: </b> Zone 2-142 </li> <li><b> Presentation: </b>Saturday - Room 309 - 9:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Oxford'>See cruzi: Cell-free Protease Detection to Diagnose a Neglected Tropical Disease</a> <br>Our project seeks to find a synthetic biology solution to the problem of diagnosing Chagas disease, a neglected tropical disease. Caused by the parasite, Trypanosoma cruzi, it is endemic to much of Latin America. Chagas disease claims over 12,000 lives per year, yet remains difficult to diagnose in its treatable acute phase. Existing diagnostics require highly-trained personnel and expensive equipment. Our solution is to develop an accurate, low cost, and portable cell-free diagnostic kit that detects the presence of cruzipain, a protease specific to T. cruzi. We have developed, modelled, and tested two designs: (i) a cell-free DNA circuit-based diagnostic utilising the TetR repressor system and (ii) a protein-based outer membrane vesicle (OMV) diagnostic using the SpyTag/SpyCatcher system for localisation of our parts to the outer membrane and a split-protease-based protein circuit to amplify the signal. We believe this method will be applicable to numerous pathogens with specific proteases.</p></div>
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<div class='column half_size'> <h2>Paris Bettencourt</h2> <ul> <li><b> Region:  </b>Europe - France</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 5-255 </li> <li><b> Presentation: </b>Friday - Room 302 - 12:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Paris Bettencourt'>Medusa: Bringing control to the 3rd dimension</a> <br>Accurate spatial-temporal response is fundamental to synthetic biology. Optogenetics has emerged as a powerful tool for genetic control and Medusa brings optogenetics to the next level. By engineering <i>E. coli</i> to respond to multiple light inputs, creating a logical AND gate, we aim to achieve both spatial and temporal control of gene expression. Photosensory transmembrane proteins as well as photoswitchable protein caging were investigated to further expand the existing library of optogenetic tools. For spatial control at the subcellular level, we explored the use of a novel synthetic RNA organelles to manipulate enzymatic activity. Finally, in an effort to promote synthetic biology, we sought the input of the DIY community and chose to illustrate the power of our system by 3D-printing biomaterials.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>PASantiago Chile</h2> <ul> <li><b> Region:  </b>Latin America - Chile</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 5-263 </li> <li><b> Presentation: </b>Sunday - Room 304 - 2:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:PASantiago Chile'>Blueberi: Saving Lives</a> <br>Our project is directed mainly to radiologists and medical technologists due to they are constantly exposed to ionizing radiation, which is harmful to the body and accumulates over the years, causing from skin problems to different types of cancer. 'Blueberi' is a biological option to dosimeters that currently work to measure how much radiation the specialist was exposed. The problem with these devices is that the results can be affected by different external factors as well as adulterations when they are sent to the National Health Service. Our project will give an immediate response to the exposure to high ionizing radiation levels , thanks to the use of genetically modified bacterias that will measure the mutation of DNA, it's going to change color and release a lemon scent, so the specialist has a double warning that the professional is in a potential risk.</p></div>
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<div class='column half_size'> <h2>Pasteur Paris</h2> <ul> <li><b> Region:  </b>Europe - France</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 1-83 </li> <li><b> Presentation: </b>Sunday - Room 309 - 2:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Pasteur Paris'>æther : an innovative air-purifying biomaterial</a> <br>Indoor air pollution is a worldwide threat and existing solutions are limited as stated by experts we met. Our aim is to design an air purifying device. Not only will it capture toxic compounds present in the air, but it will also degrade them using enzymes. As a proof of concept, we have chosen Polycyclic Aromatic Hydrocarbons (PAHs) as targets, since they are some of the most dangerous volatile air pollutants. The enzymatic pathway we have elaborated will degrade PAHs into pyruvate, a physiological compound. Our system and its coating will not release any GMOs. After meetings and discussions with the general public, health specialists, air quality regulators, law and political actors, we have designed an affordable and user-friendly device, æther. Indeed, it consists of an energetically autonomous DIY kit based on simple materials, so that people with low income and restricted access to electricity can also benefit from it.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Peking</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Information Processing</li><li><b> Poster: </b> Zone 1-82 </li> <li><b> Presentation: </b>Friday - Room 309 - 3:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Peking'>Genetic Sequential Logic Programming</a> <br>Complex gene regulation requires responses that depend not only on the current levels of input but also on signals received in the past, enabling temporal variation in cell behavior. In digital circuit theory, this information-processing paradigm refers to sequential logic. We developed recombinase parts that can stably edit DNA sequences and demonstrated their capability of implementing sequential logic in cell. The core of sequential logic is the memory module to store past events. We built a bio-flip-flop with similar function as its electronic counterpart, which can store one bit of memory. By incorporating repressilator into the system, we aim to trigger cell state transition with an intracellular oscillation clock signal. We also developed an automated method to generate genetic sequential logic circuits according to customized specification of inputs and responses in different temporal states, namely the 3D truth table.</p></div>
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<div class='column half_size'> <h2>Penn</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Hardware</li><li><b> Poster: </b> Zone 3-177 </li> <li><b> Presentation: </b>Saturday - Room 311 - 11:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Penn'>KAM-Spec: An open-source, cost-effective dispersion-based microplate reader</a> <br>Microplate readers are important tools used for multiplexed assays in synthetic biology. However, the current market price for such devices creates a high barrier of entry for many institutions. To make this key technology more accessible, the Penn iGEM team (2018) strives to create an open-source and cost-effective solution. The KAM-Spec is a ~$2K dispersion-based plate reader (up to 96 wells), in which full absorbance and emission spectra are rapidly resolved on a CCD line-array camera. KAM-spec automation and analysis is performed in Python. KAM-spec performance will be benchmarked using commercial fluorophores and common fluorescent bacterial strains used in synthetic biology and optogenetics.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Peshawar</h2> <ul> <li><b> Region:  </b>Asia - Pakistan</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 2-133 </li> <li><b> Presentation: </b>Saturday - Room 309 - 4:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Peshawar'>Bio-Reporter Fish: Detection of heavy metal contamination in freshwater through novel BioBricks-based devices</a> <br>Estimates from national and international studies indicate an alarming concentration of heavy-metals in the water resources of Pakistan, with 60 million Pakistanis affected by arsenic alone. This highlights the negative impact of heavy-metal contamination on environment, food, and health. To solve this problem, we are developing novel bio-brick devices which will enable a fish to detect Arsenic, Cadmium, Mercury, Nickel, Copper and Zinc. Using metal inducible promoters we aim to construct six devices which express specific chromo-proteins for heavy-metal detection. All devices with prokaryotic parts will initially be tested in E.coli to establish their proper functioning. Next, we will express heavy-metal reporter devices in fish which will in principle be able to provide colorimetric detection of heavy-metals in fresh water ponds. This novel bio-reporter system will ultimately help in taking timely actions to ensure the safety of water and fish, impacting the environment, food and livelihood of millions of Pakistanis.</p></div>
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<div class='column half_size'> <h2>Pittsburgh</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>New Application</li><li><b> Poster: </b> Zone 5-256 </li> <li><b> Presentation: </b>Friday - Room 302 - 1:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Pittsburgh'>Droving with Dronpa: Rapid, Reversible Control of Escherichia Coli Motility Using Light</a> <br>Real-time controllable nanorobots are an attractive goal of engineering and robotics. However, current nanorobots are limited by the precision of control: most utilize magnetic or electric field based steering. Yet, light-based control through laser technology, offers precise spatial resolution at the diffraction limit. We seek to modify the chemotactic machinery of E. coli by modulating the activity of the critical chemotaxis protein CheY. The GFP-related protein Dronpa has been demonstrated to reversibly block kinase activity through light-induced dimerization [Science 2018, 355, 836-842]. Our team has designed a novel Dronpa-CheY fusion protein to precisely control the movement of E. coli with different wavelengths of light. Since Dronpa controls CheY activity directly, the effects after exposure to light will be rapid, compared to cases controlled by gene regulation. The control of E. coli that can be precisely 'driven' on the micrometer-scale may revolutionize targeted medical treatment, bioanalytical sensing, and nanomanufacturing.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Potsdam</h2> <ul> <li><b> Region:  </b>Europe - Germany</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 2-162 </li> <li><b> Presentation: </b>Sunday - Room 302 - 2:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Potsdam'>Two novel approaches to metabolic channeling to increase the efficiency of the Indole-3-acetic acid pathway</a> <br>With metabolic channeling, the speed of the reaction of a metabolic pathway is raised by putting the enzymes close together, thus the diffusion distances for the intermediates are reduced. Therefor we have two approaches. In the first approach, we are utilizing the DNA-binding property of the dCas9-protein to put the enzymes next to each other on a DNA-scaffold. The proteins bind via Aptamers and specific binding proteins to dCAS9. This approach is tested in E. coli while the second one will be implemented in yeast. The second approach works with liquid-liquid-phase separation. In this process, membraneless organelles are formed, induced by specific variable domains of Ddx4. We want to investigate, whether fusing the enzymes for the pathway with Ddx4 enables droplet formation and thereby induces metabolic channelling.</p></div>
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<div class='column half_size'> <h2>Princeton</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 4-228 </li> <li><b> Presentation: </b>Friday - Room 312 - 3:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Princeton'>Engineering the Microbiome of Drosophila melanogaster</a> <br>Tremendous potential lies in engineering the microbiome, like recognizing and metabolizing toxic compounds the host cannot. Using the Drosophila gut as our model host and E.coli as our microbiome component, we developed techniques to engineer the gut microbiome. The E. coli was engineered to fluoresce GFP or RFP when induced by arabinose, its localization in the gut confirmed by fluorescent microscopy of dissected gut. To increase uptake of e. coli, it was mixed with baker's yeast, thus coexistence of 3 species was required to deliver the bacteria to fly gut, When continuously fed, the bacteria remained in the gut, but removing bacteria from food led to a gut residence time of E. coli of 24 hours. The work showed the resistance of the host to establish a foreign persistent microbiome; future work would involve engineering a more native bacterial species such as Lactobacillus to increase gut residence time.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Purdue</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 5-288 </li> <li><b> Presentation: </b>Saturday - Room 311 - 2:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Purdue'>Engineering the human lung microbiome to degrade inhaled carcinogens</a> <br>Benzene, an inhaled carcinogen linked to leukemia and lymphoma, is found in consumer goods and industrial byproducts. To reduce exposure-related illnesses, we engineered bacteria to degrade benzene into safe metabolites in a nine-enzyme pathway. This prophylactic Benzene REduction THERapy (BREaTHER) may be introduced to the lung microbiome. As proof-of-concept we evaluated the ability of engineered E. coli to degrade benzene via gas chromatography and measured improvements in the benzene tolerance of engineered strains. We also demonstrated that nebulizers can efficiently deliver BREaTHER into the lungs. To define the conditions under which BREaTHER is safe and effective, we developed a mathematical model. We envision BREaTHER using a variety of lung microbes and have designed 'universal' promoters and ribosome binding sites via analysis of various Gram positive and negative bacteria. BREaTHER may one day provide additional protection for concerned individuals and reduce the occupational exposure of high risk workers such as firefighters.</p></div>
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<div class='column half_size'> <h2>Queens Canada</h2> <ul> <li><b> Region:  </b>North America - Canada</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 4-205 </li> <li><b> Presentation: </b>Sunday - Room 312 - 11:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Queens Canada'>Glacial Gladiators: Bifunctional Biofilms for Arctic Bioremediation</a> <br>Biofilms are often maligned because of their roles in antibiotic-resistant infections and dental plaque. However, biofilms also offer an attractive platform for the design of self-assembling biomaterials programmed for specific functionality. The amyloid protein CsgA accounts for the majority of the proteinaceous component, curli nanofibres, of Escherichia coli biofilms. CsgA has been shown to be tolerant of C-terminal fusions, allowing CsgA endowed with diverse peptide domains to be secreted and self-assembled extracellularly similar to normal curli nanofibres. We present the genetic engineering of CsgA to create a biofilm that binds ice and degrades hydrocarbons. A type I antifreeze protein, AFP8, will be fused to CsgA for ice binding, and a PA-14 adhesin domain will be fused, via the SpyTag-SpyCatcher system, to bind the hydrocarbon-degrading bacterium Marinobacter hydrocarbonoclasticus. Thus, the end-product will be a bifunctional biofilm capable of establishing itself on Arctic ice to degrade toxic hydrocarbons present in oil spills.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>RDFZ-China</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 1-11 </li> <li><b> Presentation: </b>Friday - Ballroom A - 11:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:RDFZ-China'>Mobile Surfactant Factory Combating Oil Spill With Engineered Bacillus subtilis</a> <br>Soil contamination due to crude oil causes environmental and health-related problems. Our project engineers Bacillus subtilis that function as surfactin producing units to remediate contaminated soils. Surfactin is a biosurfactant that can emulsify hydrophobic organic compounds and, in turn, enhance the biodegradation process. To synthesize and export surfactin more efficiently, we overexpress sfp, the 4'-phosphopantetheinyl-transferase, and YerP, a surfactin efflux pump. In addition, lmrA, a multidrug resistance transporter from Lactococcus lactis, is mutated and tested for higher surfactin specificity. We want our product to provide a greener and safer alternative to methods such as heat treatment and leaching. Biosurfactants and the introduction of Bacillus subtilis should have fewer impacts on soil microbiome, and should be more effective than relying on bioremediation alone. We hope that our project can contribute to the use of B. subtilis as a chassis in synthetic biology, and explore new methods of utilizing multi-drug resistance factors.</p></div>
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<div class='column half_size'> <h2>REC-CHENNAI</h2> <ul> <li><b> Region:  </b>Asia - India</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Food & Nutrition</li><li><b> Poster: </b> Zone 2-121 </li> <li><b> Presentation: </b>Sunday - Room 309 - 12:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:REC-CHENNAI'>Latarcoli: A knight on guard against food pathogens</a> <br>The rise of the super bugs poses an imminent threat that looms large for the very existence of humanity, catching us off guard and weaving the web of extensive antibiotic resistance. Antimicrobial peptides have found a meteoric acclamation amongst research scientists owing to their lineament of resisting the resilience of bacteria. Latarcins are antimicrobial peptides found in spider venom. Latarcin-2a(M-Zodatoxin) is a 26 amino acid, highly cationic peptide that lyses microbes via a discrete, membrane-specific carpet mechanism. A proposed mutation to its native form eliminates its existing haemolytic and cytolytic activity thus rendering it innocuous to humans. In an attempt to overcome the lethal effects of Latarcin on our chassis itself, a quorum sensing mechanism will be incorporated into our host. Having identified a niche in the food preservative sector, we plan to enclose this engineered strain in a food wrapper to extend the shelf life of food.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>RHIT</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Open Track</li><li><b> Poster: </b> Zone 3-181 </li> <li><b> Presentation: </b>Saturday - Ballroom B - 1:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:RHIT'>B-Fine: Characterization of Vitamin B9 and B12 Binding Riboswitches</a> <br>Enabling the ease of access to proper nutrition is vital for developing a healthy human population. Understanding the elements of nutrition will aid in engineering solutions to current -and future- nutrition concerns. One set of vitamins where deficiencies are presently a concern, especially among pregnant women, are vitamins B9 and B12. The primary goal of this project was to characterize and document riboswitches responsive to vitamins B9 and B12. Five riboswitches regulated by either vitamin B9 or B12 were selected and synthesized. E. coli were engineered to express the mRNA regulating GFP expression constitutively using the well-documented promoter BBa_J23106. The GFP expression when exposed to varied levels of the ligand were measured over time through fluorescence measurements, and the binding affinity of the ligand to each riboswitch was determined through isothermal titration calorimetry. These data and subsequent documentation will aid in providing a usable, documented part for further use.</p></div>
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<div class='column half_size'> <h2>Rice</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 1-37 </li> <li><b> Presentation: </b>Sunday - Room 312 - 12:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Rice'>HexaTri: Bioremediation of Chromium(VI) Contaminated Wastewater via Engineered Chromium(VI)-Reducing Shewanella oneidensis</a> <br>A recent analysis of America's drinking water for carcinogenic hexavalent chromium (CrVI) revealed over 218 million Americans consume CrVI at levels exceeding a de minimis lifetime cancer risk. Our team attempted to solve this problem by engineering Shewanella oneidensis to reduce CrVI to its less toxic form (CrIII) in contaminated wastewater. We enhanced reduction via expression of a mutated chromate reductase enzyme (chrR6) and increased chromate permeability via over-expression of sulfate transporter and binding proteins (cysP,U,W,A and sbp). Addressing biocontainment, we included a 'kill switch' where low CrVI levels signaled expression of a 'toxin' (BamHI). Laboratory work has been completed in model organism Escherichia coli; future work includes characterizing the circuit in S. oneidensis. To assess real-world feasibility, we developed bioreactor- and cell-scale simulations of our engineered bacteria in an activated sludge secondary treatment system aimed at determining the kinetics of Cr(VI) remediation and cell death.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>RPI Troy NY</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Manufacturing</li><li><b> Poster: </b> Zone 1-4 </li> <li><b> Presentation: </b>Saturday - Room 312 - 2:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:RPI Troy NY'>Selective modification of yeast MFE2 gene improves the efficiency of medium-chain length sophorolipid production.</a> <br>Sophorolipids are a group of amphipathic compounds synthesized by yeasts, including our selected chassis Starmerella bombicola. These compounds are among the most industrially viable biosurfactants. As surfactants, sophorolipids are superior to current synthetic alternatives largely due to their low toxicity and ready biodegradability. Anti-cell proliferation and anti-microbial assays suggest that medium-chain length sophorolipids possess therapeutic potential. However, their higher cost of production poses a major barrier to commercial use. Even when grown on a substrate largely composed of fatty acids, a significant portion of the fatty acids are diverted from sophorolipid production due to competition with the β-oxidation pathway. Fatty acids diverted into the β-oxidation pathway undergo irregular cleavage, lowering sophorolipid yield and creating a heterogeneous mixture of products. Full suppression of this pathway would result in undesirable metabolic disruption. Selective suppression of this pathway through genetic engineering could reduce production costs through improving the yield of useful chain lengths.</p></div>
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<div class='column half_size'> <h2>SCU China</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>New Application</li><li><b> Poster: </b> Zone 4-245 </li> <li><b> Presentation: </b>Saturday - Room 311 - 4:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:SCU China'>Rhythmic Production of Melatonin in E.coli</a> <br>Nowadays, insomnia and circadian rhythm disorders are increasingly plaguing individuals' daily life. According to NIH reports, around 50-70 million U.S. adults are suffering from sleep insufficiency and poor-quality sleep. The circadian rhythm in human is predominantly under the regulation of melatonin, a hormone produced by pineal gland periodically. This year we want to use engineered E.coli to mimic this process in human. We propose to construct a melatonin biosynthesis pathway in E.coli to produce melatonin, while simultaneously couple this process with periodically-optimized repressilator, a synthetic genetic oscillator with higher precision, with the intention to render melatonin production resemble mammalian periodicity in E.coli.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>SCU-WestChina</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 5-282 </li> <li><b> Presentation: </b>Saturday - Room 310 - 9:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:SCU-WestChina'>Blocking the Urate Storm in the Blood</a> <br>Hyperuricemia and refractory gout are caused by the high urate concentration in the blood. Considering there are still debates on whether the drug should be used in the asymptomatic hyperuricemia patients and the drug resistance of the refractory gout patients, new approaches are eagerly needed. We constructed the urate metabolic pathway in the probiotic E. coli Nissle 1917 and applied it in the gut to reduce the urate concentration in the blood indirectly. In addition, we built a dialysis-like device combined with modified bacteria to utilize the urate directly in the blood. Our solutions provide a suitable, long-term and non-drug treatment for asymptomatic hyperuricemia patients and an ultimate treatment for the refractory gout patients.</p></div>
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<div class='column half_size'> <h2>SCUT-China A</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 4-212 </li> <li><b> Presentation: </b>Saturday - Ballroom A - 11:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:SCUT-China A'>A reporter device based on SRRz lysis gene applied to heavy matel ions detection</a> <br>Our team tries to build a group of heavy metal bio-sensors: We standardize the lysis gene SRRz and the β-galactosidase gene, to build a visible and low-cost reporter which can detect chemical substances in aqueous solution qualitatively, and in a certain concentration range, it can detect the chemical substances quantitatively. Subsequently, we will link some specific inducible promoters of heavy metal ions to this reporter and transform these devices into Escherichia coli BL21 to verify the feasibility of the reporter and construct engineering bacteria that can rapidly detect heavy metal ions in aqueous solution.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>SCUT-FSE-CHINA</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>New Application</li><li><b> Poster: </b> Zone 1-7 </li> <li><b> Presentation: </b>Friday - Room 310 - 11:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:SCUT-FSE-CHINA'>Robust E.coli for Open Culture in Industrial Fermentation Processes</a> <br>Microbial fermentation is an important component of industrial biotechnology and is increasingly popular, with products ranging from bulk chemicals to bioactive molecules. However, despite advance in biotechnology and improvement in fermentation control, microbial contamination and phages infection during fermentation process still remain major concerns worldwide. This is due to the widespread distribution of microorganism as well as phages and the consequent negative economic impact caused by frequent sterilization. In an effort to avoid fermentation failure and even to make these processes more economical, we try to introduce a 'robust strain' for developing the fermentation process in the open (unsterile) culture. Here, we introduce the metabolic pathways of formamide and phosphite into the host to fit our special designed medium so that the unexpected microorganism could not exist. Additionally, applying CRISPR/Cas9 system makes the host attain phage resistance ability. Eventually, an open fermentative process can be achieved.</p></div>
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<div class='column half_size'> <h2>SDSZ-China</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 1-6 </li> <li><b> Presentation: </b>Friday - Ballroom B - 4:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:SDSZ-China'>Automatic Synthesis of UDCA (Effective Ingredient of Bear Bile) Using Immobilized Enzymes</a> <br>Bear bile, a widely employed Chinese traditional medicine, has significant pharmaceutical effects on treating primary biliary cholangitis, hepatitis C, allotransplantation rejection, primary sclerosing cholangitis, and acute calculous cholecystitis. In order to find an alternative for extracting bile from living Asian black bear, our team works on the biological synthesis of UDCA( Ursodeoxycholic Acid, the effective ingredient of bear bile). By employing CBD(cellulous binding domain) to immobilize enzymes (7α-HSDH, 7β-HSDH, GDH, and LDH) on cellulous, we are able to convert CDCA(Chenodeoxycholic Acid), found in goose bile, into UDCA. Furthermore, we have designed a machine equipped with reaction efficiency measuring system and enzyme-adding controlling system. Our automatic biological synthesis will not only be more efficient but also be cheaper than the tradition extraction and the chemical approach. This approach relieves the pain of patients and the bile bears.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>SDU CHINA</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 1-27 </li> <li><b> Presentation: </b>Friday - Room 304 - 11:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:SDU CHINA'>Cancer Slayer ─ An invincible opponent of PD-L1</a> <br>Non-small cell lung cancer (NSCLC) is the leading cause of cancer-related death among the world with low overall survival rate. In NSCLC, immunotherapy has been indicated as a potential therapy for treating in situ solid tumor. Previous research has indicated that tumor cells can express programmed death-1 ligand (PD-L1) to diminish T-cell effector functions and therefore to achieve immune escape. In our project, gene edition will be incorporated with immunotherapy to eradicate the immune escape occurred in NSCLC. By constructing plasmid with Crispr-Cas 9 system targeting the gene coding for PD-L1, the expression of PD-L1 will be inhibited to restore immune system supervision. To ensure the biosafety, another plasmid with Crsipr-Cas 9 system to cut off the housekeeping gene of two plasmids will be also constructed to suicide both plasmids when PD-L1 expression was not detectable. Better therapeutic effects of immunotherapy to conquer the NSCLC are hoped to be achieved.</p></div>
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<div class='column half_size'> <h2>SDU-Denmark</h2> <ul> <li><b> Region:  </b>Europe - Denmark</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Energy</li><li><b> Poster: </b> Zone 4-229 </li> <li><b> Presentation: </b>Sunday - Room 304 - 11:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:SDU-Denmark'>PowerLeaf a bacterial solar battery</a> <br>The PowerLeaf introduces a novel solution for long-term storage of solar energy, thus becoming an alternative to solar cells. This is accomplished without the use of environmentally harmful resources. The device is designed to resemble a plant leaf, which is meant to provide a nature-in-city ambience. This hypothetical implementation of the PowerLeaf in an urban environment, was developed through public engagement and collaboration.The bacterial solar battery is composed of an energy storing unit (1), and an energy converting unit (2). The energy storing unit (1) is defined by a genetically engineered Escherichia Coli, which fixates carbon dioxide into the chemically stable polymer cellulose. A light sensing system activates dormancy during nighttime, to reduce energy lost by metabolism. The energy converting unit (2) uses genetically engineered Geobacter Sulfurreducens to consume the stored cellulose. Retrieved electrons are transferred by optimized nanowires to an anode resulting in an electrical current.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>SECA NZ</h2> <ul> <li><b> Region:  </b>Asia - New Zealand</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Food & Nutrition</li><li><b> Poster: </b> Zone 1-24 </li> <li><b> Presentation: </b>Saturday - Ballroom B - 11:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:SECA NZ'>Frozen in Thyme</a> <br>With an ever-growing world population, having sustainable and reliable crops for food production is becoming increasingly important. However, every year millions of dollars' worth of produce is damaged, lost, or never produced because of frosts. Frost damages new shoots and buds of crop plants through the formation of ice crystals within the tissues, which rupture the surrounding cells. As a result, new plant and fruit growth is severely inhibited. Despite promising research into frost resistance mechanisms, the majority of producers still utilise costly, and often ineffective, traditional methods of frost avoidance. Our team seeks to introduce a variety of frost resistance genes into the model organisms Arabidopsis thaliana and Escherichia coli for characterisation. This will provide insight into the varying ability of frost resistance genes to protect model organisms at sub-zero temperatures, ultimately leading to the production of frost tolerant crops.</p></div>
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<div class='column half_size'> <h2>Shanghaitech</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 1-68 </li> <li><b> Presentation: </b>Sunday - Room 302 - 1:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Shanghaitech'>A multilayer signal-processing system based on Quorum Sensing (Multilayer-QS)</a> <br>In synthetic biology, building complex logic circuits are often difficult, especially in a single cell population. It requires many non-crosstalking information processing units such as quorum sensing (QS) factors, to work within a cell without significant interference. However, these non-crosstalking QS factors are very limited. Furthermore, even for simple circuits, one has to create de novo which can be difficult for beginners. It would be ideal to use modularized parts assemble directly into circuits. Therefore, we aimed to create a multilayer signal-processing system by using compartmentalized QS factors. We have provided proof-of-concept data and modeling to show that our system would allow faithful information flow between bacterial population. Also, we aimed to build QS part libraries to allow easily switching of parts, changing signal inputs and outputs without de novo cloning. Thus, our system may not only increase signal-processing power, but also make it more friendly to synthetic biologists.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Sheffield</h2> <ul> <li><b> Region:  </b>Europe - United Kingdom</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Hardware</li><li><b> Poster: </b> Zone 3-183 </li> <li><b> Presentation: </b>Saturday - Room 311 - 11:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Sheffield'>BrightBiotics Monitoring bacterial growth to advise on antibiotic choices</a> <br>With increasing use, and especially misuse of antibiotics, microorganisms keep becoming more and more resistant to them. This phenomenon is called antimicrobial resistance, or AMR. As current diagnostic devices are not fast enough, this has resulted in the overprescription of antibiotics, leading to an increase in AMR. The aim of our project, BrightBiotics, was to create a cheap, rapid and user-friendly way to faster advise healthcare professionals, on what antibiotics to use. Our device, the BrightBiotics System, does this by measuring bacterial growth, as turbidity, in the presence of different antibiotics. Once the patient's sample has been prepared and put in the device, photodiodes detect changes in turbidity, and the data is sent via WiFi to the Cloud. The healthcare professionals can then check the results allowing them to make a more informed decision about which antibiotic to give the patient.</p></div>
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<div class='column half_size'> <h2>Shenzhen SFLS</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 5-289 </li> <li><b> Presentation: </b>Sunday - Room 306 - 4:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Shenzhen SFLS'>Targeting the Mutant BRAF in Melanoma Cells by CRISPR/Cas9 Technology</a> <br>Melanoma is the most malignant type of skin cancer with high metastasis potential and a low survival rate. It is reported that about 60% of melanomas contain a mutation in the v-raf murine sarcoma viral oncogene homolog B (BRAF), and V600E (1799T>A) variation in BRAF is the main type of mutations in the cancer tissues, which plays a critical role in carcinogenesis of melanoma. In our project, we aim to disrupt the mutant BRAF in the two melanoma cell lines (A375 and G361) by CRISPR/Cas9 technology. The data showed that the system significantly inhibited the proliferation and migration, and induced apoptosis in the two cell lines, which suggest that we could target a specific oncogene and achieve personalized therapy for different types of cancer only by simply changing the sequence of a sgRNA.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>SHSBNU China</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 1-52 </li> <li><b> Presentation: </b>Saturday - Room 311 - 9:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:SHSBNU China'>Noninvasive gut inflammation detector</a> <br>Thiosulfate and tetrathionate are two kinds of chemical compound which would be produced during gut inflammation. Until now, scientists are able to detect gut inflammation using utilized two-system detector, which includes detector and reporter part, gained from marine Shewanella species and present the result by expressing sfGFP gene. Considering this method can be further improved, SHSBNU_China team worked on changing the reporter part to let the results be presented more clearly and visibly without specially-produced ultraviolet light, instead, the E.coli would change into a different color even in anaerobic environment. Furthermore, to make the result being collected more easily, we developed a kind of pill, where the E.coli is stored, with special walls that would only allow small molecules to get through. This system also has a functional potential that it could be further modified to do some treatment to the inflammation once it's detected.</p></div>
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<div class='column half_size'> <h2>SIAT-SCIE</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 2-131 </li> <li><b> Presentation: </b>Sunday - Room 312 - 9:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:SIAT-SCIE'>Tardi-Guards</a> <br>Genetically engineered organisms designed by iGEM teams have the potential to serve in wide range of fields. And when it comes to application, resilience of these organisms is an important factor that needs our attention. Hence this year, our project seeks to improve the stress resistance ability of engineered organisms. Our solution was built upon Tardigrades, an organism famous for their extraordinary ability to survive in harsh conditions. The resilience comes from some unique protective proteins. We express these proteins in vivo, test its ability to increase the survivability of bacteria under water deficient and radiation conditions, eventually it will be used on eukaryotic cells like yeast, multicellular organisms like nematode or even mammal cells and organs. Our products can be easily used by many teams whose engineered organism have to work in extreme environments, with numerous potential use such as in culture collection and protection of transplant organs.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>SiCAU-China</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>New Application</li><li><b> Poster: </b> Zone 1-60 </li> <li><b> Presentation: </b>Saturday - Room 302 - 9:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:SiCAU-China'>A Sensitive Positive Feedback Detector</a> <br>Positive feedback system can be found in everywhere, existed widely in creature contained from Lac operon of prokaryotes to human beings, and it has been used to construct various attractive circuits such bistable state, oscillators and other inconceivable systems. In our project this year, the significant performance of sensitivity, which researchers has not concerned to, will be developed in positive feedback loop established by LuxR/LuxI quorum sensing system. But this loop will be open because of its background expression. The AiiA, which can hydrolyze the AHL, will be control the background expression, together with the Lac operon being the system main switch. Furthermore, the input defined by user will have a negative correlation to the opening time. Hence, there need a model to describe this relation and even realize quantitative determination.</p></div>
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<div class='column half_size'> <h2>SJTU-BioX-Shanghai</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>New Application</li><li><b> Poster: </b> Zone 2-95 </li> <li><b> Presentation: </b>Saturday - Room 302 - 10:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:SJTU-BioX-Shanghai'>Palette</a> <br>In our project, Palette, we develop a system which can detect multiple target substances and can read the result by naked eyes. We choose chromoproteins to provide rich colors for indication of multiple signals. Furthermore, by mixing two types of chromoproteins, we can create a third color taken as the characterization of the relative abundance of two signal molecules. We employed small transcription activating RNAs (STAR) to decrease the leaky expression of chromoproteins which we found in our experiment. We also introduced test paper and smartphone into our project to make our system more user friendly. With these designs, even ordinary people can easily tell the concentration of target substances. To test the system, we choose heavy metal ions as an example. Since heavy metal pollution is an urgent problem, we hope our application can be used widely.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>SJTU-Software</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Software</li><li><b> Poster: </b> Zone 3-173 </li> <li><b> Presentation: </b>Sunday - Room 309 - 4:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:SJTU-Software'>BAT: BiobrickAssist Technology, a search & evaluation engine for biobricks</a> <br>As many accessable biobricks are not well annotated or documented even on some official sites, researchers especially novices are hard to find biobricks of high quality. Thus we have developed a web application named BAT(BiobrickAssist Technology) with Node.js. BAT mainly functions as a search and evaluation engine for biobricks. We are aimed to create a platform for researchers to learn and evaluate. Based on our work in 2016, BAT can do evaluation at different levels and evaluate completely new biobricks, and this year we do some optimization for the scoring algorithm. Users may search biobricks by categories, submission time etc. Considering the auto-evaluation may not be perfect all the time, we have been developing a small but useful community like Q/A for users to manually select best biobricks. If a researcher has used a biobrick, he(she) can score it on our site and leave a short comment.</p></div>
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<div class='column half_size'> <h2>SMS Shenzhen</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 4-230 </li> <li><b> Presentation: </b>Sunday - Room 306 - 3:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:SMS Shenzhen'>Pesticide Mate</a> <br>This year, SMS_Shenzhen develops a pesticide mate which can reduce copious quantities of pesticides using and is free from side effects to the environment. Scale insects are pests which threaten agriculture and gardening industry. Because of its harmfulness and tenacity, a large amount of contact pesticide is used yearly to repress its outbreak. In this project, E. coli was applied to selectivity degrade the thick shell of scale insects. Three kinds of enzymes are expressed in E. coli to degrade the chitin, protein and wax shell, which make it possible for pesticide to penetrate the shell. To avoid hurting plants'wax-protein surface, a sucrose-induced enzyme release system is introduced, which utilizes the insect's honeydew secretion. Though pests may not be killed directly by E. coli, there is a huge decrease in pesticides needed in the killing process, which saves much money and brings numerous benefits to environment.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>SSTi-SZGD</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 2-113 </li> <li><b> Presentation: </b>Friday - Ballroom A - 3:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:SSTi-SZGD'>Guardian of the wheatland</a> <br>The aim of this project is to combine optogenetics and biotechnology, by using genetically modified organism as the core carriers, to develop a novel method for degrading pesticide residues in contaminated soil. We employed a novel light inducible/repressive system that can efficiently overexpress heterogenous hydrolases that are able to degrade chemical pesticides organophosphorus and parathion-methyl residues in soil . By using light control gene expression system, protein products can be produced without the need of using toxic and expensive chemical inducers (i.e. IPTG). In addition, we plan to develop a device that integrates monitoring and data-sharing functions that help applying this system to on-site pesticide residue detection and degradation. We hope to achieve a microbial degradation method with low toxicity, low cost and high efficiency that serve a positive role in maintaining ecological balance and sustaining development in China .</p></div>
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<div class='column half_size'> <h2>Stanford-Brown</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Manufacturing</li><li><b> Poster: </b> Zone 3-204 </li> <li><b> Presentation: </b>Sunday - Ballroom A - 12:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Stanford-Brown'>Mars: Getting there and staying there</a> <br>Planetary exploration requires a balance between preemptive planning and financial feasibility. The risk of mid-mission equipment failure, power shortages, or supply depletion incentivizes precautionary measures, but the financial strain of sending unnecessary mass into space limits this practice. To balance the two, our team explored the advantages of biological solutions, namely the self-sustaining abilities of low-mass organisms, to make planetary exploration more self-sufficient and economical. Prioritizing repair over replacement, we are developing self-healing materials embedded with Bacillus subtilis. For longer-lasting energy, we are designing a 'biobactery' using linearly oriented E. coli to generate power. For renewable materials, we are engineering bacteria to synthesize and degrade rubber. Individually, these projects offer sustainable alternatives for repair, power, and materials. But when combined, these consolidated insights can provide us with the power to get to Mars and resources to sustain us while we're there.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Stockholm</h2> <ul> <li><b> Region:  </b>Europe - Sweden</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 1-28 </li> <li><b> Presentation: </b>Saturday - Room 302 - 3:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Stockholm'>PROlung – a mucus degrading lung probiotic</a> <br>Until recently, the mucus layer of our lungs has remained unexplored. Many respiratory diseases such as asthma, chronic obstructive pulmonary disease (COPD) and cystic fibrosis are characterized by an excessive accumulation of thick mucus. Afflicted people suffer repeated lung infections and breathing difficulties caused by clogged airways, resulting in severely reduced quality of life. We address this issue by developing an unprecedented probiotic approach that self-regulates mucus thickness to protect and promote respiratory health. Our engineered bacteria sense the pathologically altered osmotic pressure caused by thickened mucus, thus triggering the expression of mucus degrading enzymes. For a proof-of-concept we degrade mucus, envisioning to clear the airways and consequentially remove entrapped pathogens and harmful particles. As pioneers in the field of lung probiotics, we challenge conventional treatments by exploring the lung microbiome as a potential solution to manage mucus-related respiratory diseases.</p></div>
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<div class='column half_size'> <h2>Stony Brook</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 1-49 </li> <li><b> Presentation: </b>Sunday - Ballroom A - 10:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Stony Brook'>Bacterioassassins: Development of hybrid bacteriocins to Target Methicillin-resistant Staphylococcus aureus</a> <br>MRSA is a prevalent threat due to its high resistance against multiple antibiotics, prompting health professionals to find alternative treatment options. Bacteriocins are ribosomally synthesized antimicrobial peptides produced by bacteria to selectively kill other strains of bacteria in their surrounding environment. Our study involves creating a hybrid of the bacteriocins, Lacticin Z and Aureocin A53 (or Epidermicin NI01) by connecting them with three glycine residues. These bacteriocins have shown effective inhibitory activity against MRSA strains; they form pores to penetrate the membrane of the pathogenic strain. We tested if the hybrid bacteriocins will have a synergistic effect and compared their cytotoxicity over time to that of the individual bacteriocins against MRSA. This was done by conducting two assays: minimum inhibitory concentration and the spot-on-lawn. Through development of hybrids, we aim to optimize the activity of bacteriocins and treat bacterial infections, particularly those with antibiotic resistance.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Stuttgart</h2> <ul> <li><b> Region:  </b>Europe - Germany</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 4-235 </li> <li><b> Presentation: </b>Sunday - Room 311 - 9:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Stuttgart'>Light up the Pipe</a> <br>The clogging of drains and pipe systems by hair and fat is a serious problem in industry and private households. Currently many blockages are dissolved by toxic and reactive chemicals like sodium hydroxide and chlorine compounds. We want to engage this problem in a more sustainable way by developing a biological cleaner based on a holistic approach using E. coli. Our microbial system is targeted on producing and secreting enzymes to break down hair, fat and other pollutants. By optimizing the secretion of the selected enzymes, we are avoiding enzyme purification which can save valuable money and time. Additionally we want to produce a scent from the existing waste as an indicator of successful degradation. Involving mathematical modeling of enzymatic kinetics and degradation processes will support the experimental work. Concluding, we hope to reduce chemical waste and deal with an everyday problem more sustainably.</p></div>
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<div class='column half_size'> <h2>SUIS Alpha Shanghai</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 4-217 </li> <li><b> Presentation: </b>Sunday - Room 310 - 11:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:SUIS Alpha Shanghai'>E-coli?? E-cOILi: Recycled Waste Cooking Oil Treatment System.</a> <br>Recycled waste cooking oil exhibits amplified volumes of Malondialdehyde (MDA), a mutagenic and carcinogenic substance which reacts with DNA to form adducts to deoxyguanosine and deoxyadenosine. The illegal practice returning this recycled waste oil back into the food industry can result in the ingestion of unsafe quantities of MDA. Malondialdehyde can be broken down into benign metabolites via the sequential enzymatic action of aldehyde dehydrogenase (specifically mitochondrial ALDH2) and malonic semialdehyde oxidative decarboxylase. The products of the reaction are acetyl-CoA with the release of CO2. We designed a genetic circuit which expresses these two enzymes in equal amounts and is supports the expression system of E.coli, rendering our device useful for the development of a biological treatment system which could form part of standard protocols relating to the treatment of waste oil in industrial oil refinery plants.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>SUSTech Shenzhen</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 1-12 </li> <li><b> Presentation: </b>Sunday - Room 311 - 11:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:SUSTech Shenzhen'>C.elegans in Skinner Box the study of learning behavior based on optofluidics</a> <br>What is the distinction between the conditioned reflex of Pavlov's dogs and the behavioral reinforcement of Skinner's pigeons? What is the determination of the formation of behaviors and how to control it? Taking the response to alcohol of C.elegans as an example, a platform of optofluidics is established to provide deeper insights into these questions. Expression of two channelrhodopsins in the olfactory receptor neuron pair provides worms with the preference and aversion to specific wavelengths, and the lights are employed to reinforce their addictive or abstemious attitude to alcohol. The neo-behaviorism theory is expected to be verified in C.elegans, demonstrating the learning capability of model organisms based on both behavioral observation and quantification at the molecular level. Hopefully, downstream neurons of the new-learned behavior will be revealed by using this platform, and it depicts a future of training human brains through optogenetics.</p></div>
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<div class='column half_size'> <h2>SVCE CHENNAI</h2> <ul> <li><b> Region:  </b>Asia - India</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 1-57 </li> <li><b> Presentation: </b>Sunday - Room 309 - 9:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:SVCE CHENNAI'>ReguloGEM - the ideal regulatory BioBrick</a> <br>Synthetic biologists over the years have regulated protein expression using two types of regulators - transcriptional and translational. While transcriptional regulators are easily composable and are capable of regulating multiple genes(operons) and complex genetic circuits, they are difficult to engineer. On the other hand, translational regulators are not capable of regulating multiple genes and complex genetic circuits but can be easily engineered de novo using predictive thermodynamic models. Hence an ideal regulator is found wanting, one which is capable of regulating multiple genes simultaneously and at the same time easily engineerable. ReguloGEM provides such a regulator based on the tnaC operon. This regulator termed the Adaptor is capable of converting the translational regulatory property of riboswitches into transcriptional regulation. The Adaptor will be tested using temperature and pH sensitive riboswitches. We have also built a machine learning based tool that is capable of predicting the strength of sigma 70 promoters.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Sydney Australia</h2> <ul> <li><b> Region:  </b>Asia - Australia</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 4-246 </li> <li><b> Presentation: </b>Saturday - Room 311 - 1:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Sydney Australia'>Designing Insulin that is Single-Chain and Open-source (DISCO)</a> <br>Insulin is used to treat diabetes, which affects about 415 million people globally today. Currently, the control of the insulin market by a few large pharmaceutical companies has kept insulin prices very high, beyond the reach of many around the world who rely on insulin for survival. This year, the University of Sydney iGEM team aims to address this problem of worldwide insulin inaccessibility. Our project involves using synthetic biology to develop an insulin manufacturing system that is cost efficient and simple, using the bacterial species Escherichia coli and Bacillus subtilis. We plan to have these microbes express proinsulin, the native human insulin, as well as our own newly designed open-source single-chain insulin, which we named 'Winsulin'. We hope to develop a novel, cost efficient, and optimised pipeline for the production of proinsulin and Winsulin - a small step in making insulin affordable for all.</p></div>
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<div class='column half_size'> <h2>SYSU-CHINA</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 2-144 </li> <li><b> Presentation: </b>Sunday - Room 312 - 1:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:SYSU-CHINA'>Stem Cell Woundplast</a> <br>Our goal this year is to provide a novel therapy for Asherman's Syndrome (AS) with engineered mesenchymal stem cells (MSCs). AS is characterized by adhesions in the endometrium, and often associated with dilation and curettage of the intrauterine cavity. Current treatment remains ineffective for severe adhesions, which may lead to infertility, repeated miscarriages, obstetric complications, even endometriosis. Our Woundplast aims at treating AS with MSCs in a safe and effective manner. To target and maintain engineered MSCs to the wound, we use Pluronic F-127, an FDA approved material as supporting matrix. Besides, we engineered MSCs to over-express PVDF, bFGF and VEGF individually or in combination to further promote wound healing. We test our idea in vitro with rat model. More importantly, we believe our project has the potential to be used in other types of wound healing, not just AS.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>SYSU-Software</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Software</li><li><b> Poster: </b> Zone 3-172 </li> <li><b> Presentation: </b>Sunday - Room 310 - 10:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:SYSU-Software'>S-DINSearch engine and Design platform for Inspiration with Network analysis.</a> <br>With an exponential accumulation of circuit designs in synthetic biology, it becomes time-consuming to ponder out how to utilize the previous works in solving a new problem. This year, we create S-DIN for the ocean of projects facilitated by the power of network analysis and recommendation algorithms. It contains two main parts: Intelligent Search Engine and Embedded Design Platform. By drawing digital users portrait, our search engine can help users specify their needs and recommend related projects & parts. For the first time in synthetic biology, we introduced the big-data analysis to analyze the complex network of projects, parts, and topics, which supports our recommendation and search results in a global way. The embedded design platform allows you to search and edit a previous work simultaneously and related circuits & parts are recommended based on interaction database. Finally, the mathematical performance of circuits design will be simulated by our platform.</p></div>
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<div class='column half_size'> <h2>Szeged SA RMG</h2> <ul> <li><b> Region:  </b>Europe - Hungary</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 4-208 </li> <li><b> Presentation: </b>Saturday - Room 309 - 11:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Szeged SA RMG'>METHUNGENY - Methane Biosensor Project</a> <br>Methane is a significant substance both in the environment and in the industry, thus indicating its presence has a great importance. Our aim is to develop a methane-biosensor. Our plan is to genetically modify a methanotroph bacterium (Methylococcus capsulatus) to produce lactate from methane or methanol. During its metabolism this bacterium produces pyruvate in the presence of methane. After having inserted the lactate-dehydrogenase gene, pyruvate is converted to have enough lactate for an enzymatic assay to change color when excess amount of methane is present in the environment of the bacteria. In the beginning the bacterium is cultivated in NMS medium containing methanol. For the genetic modification we use the lactate-dehydrogenase gene from Bacillus coagulans. First we transform E. coli with the cloned pMHE conjugation vector, which will transfer the LDH gene into M. capsulatus. The lactate concentration of the transformed bacterial medium will be determined with a lactate-assay.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>SZU-China</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Manufacturing</li><li><b> Poster: </b> Zone 4-209 </li> <li><b> Presentation: </b>Sunday - Room 304 - 9:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:SZU-China'>CON-cure-CRETE</a> <br>This year we designed a self-healing system for concrete. When there is a microcrack our system can be switched on and concrete can start to heal themselves. We transfered gerA gene to be our biosensor. When there is liquid L-alanine. GerA receptor can be induced so the whole chain can be started. we improved the alkali resistance by transfer nhaC. We put the spores of our Bacillus subtilis into microcapsules, along with nutrients and L-alanine powder. And mix the microcapsule with concrete. When there is a microcrack, the tension of the wall breaking will also break the microcapsule and the water will infiltrate, after the germination that induced by L-alanine. The Carbonic anhydrase gene that we transfered will let CO2 hydrate to produce CO32-, which then binds with free Ca + in the environment to form calcium carbonate sediment,so the microcracks are filled.The rebars inside won't rust.</p></div>
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<div class='column half_size'> <h2>Tartu TUIT</h2> <ul> <li><b> Region:  </b>Europe - Estonia</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Manufacturing</li><li><b> Poster: </b> Zone 4-243 </li> <li><b> Presentation: </b>Sunday - Ballroom A - 11:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Tartu TUIT'>Yeasthylene</a> <br>Ethylene is the building block of many chemical compounds. Its polymer, polyethylene, is the main component in numerous plastic materials. Due to its versatility, the demand for ethylene has been increasing during the last decade. As it is derived from petroleum, which is a non-renewable source, it is necessary to find an environmentally friendly way of producing ethylene to satisfy this demand. In this project, two yeast strains with completely different roles will be genetically modified to produce ethylene from sucrose. The focus of the project is set to make those strains dependent on each-other and to provide a balanced growth. This approach represents a more efficient method than cloning the whole pathway into one population, especially when longer heterologous pathways will be used in the future to produce more complex chemicals. Energy gain due to lower metabolic burden and balanced co-factor metabolism will result in higher production rates.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>TAS Taipei</h2> <ul> <li><b> Region:  </b>Asia - Taiwan</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 1-45 </li> <li><b> Presentation: </b>Sunday - Room 310 - 12:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:TAS Taipei'>NANOTRAP; Nanoparticle removal from wastewater systems</a> <br>The small size of nanoparticles is both an advantage and a problem. Their high surface-area-to-volume ratio enables novel medical, industrial, and commercial applications. However, their small size also allows them to evade conventional filtration during water treatment, posing health risks to humans, plants, and aquatic life. Our project aims to remove nanoparticles using two approaches: 1) bind citrate-capped nanoparticles with the membrane protein proteorhodopsin and 2) trap nanoparticles using E. coli biofilm produced by overexpressing two regulators -- OmpR234 and CsgD. We envision integrating our trapping system in both rural and urban wastewater treatment plants to efficiently capture all nanoparticles before treated water is released into the environment.</p></div>
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<div class='column half_size'> <h2>TCFSH Taiwan</h2> <ul> <li><b> Region:  </b>Asia - Taiwan</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 5-276 </li> <li><b> Presentation: </b>Saturday - Ballroom A - 4:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:TCFSH Taiwan'>Detecoli : A biomonitor sticker on freights</a> <br>DETECOLIa word we created by combining 'detection' and 'E. coli'which changes color in environments of excess sunlight or high temperatures. The detection should be visualized by discriminating the alteration of three chromoproteins (cjBlue, RFP, BFP) expressed by E. coli with the regulatory circuit of temperature and UV light. We aim to build up a quantitative experiment for observing the color of E. coli. For the practical application we aim to place E.coli on stickers and attach the stickers on the product before delivery, thus able to monitor the whole process of transportation. DETECOLI alerts consumers to possible deterioration or contamination by changing color, and serves as a guarantee of quality.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Tec-Chihuahua</h2> <ul> <li><b> Region:  </b>Latin America - Mexico</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 2-123 </li> <li><b> Presentation: </b>Saturday - Room 302 - 1:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Tec-Chihuahua'>Erwinions: Quenching the fire out of Fire Blight</a> <br>Erwinia amylovora causes fire blight disease worldwide in some important crops such as apple, roses, pear and most Rosaceae's family members. For example, the largest Latin American apple producer has 3,000 hectare from which 50% are estimated to have the disease. This iGEM edition, Tec-Chihuahua presents its proposal to address this environmental/economical issue by using synthetic biology techniques to synthesize three enzymes that might inhibit most, if not all, of the virulence factors. The use of N-Acyl homoserine lactonase would directly affect the AHLs by hydrolyzing the main quorum sensing molecule. Then, the Cyclic-di-GMP phosphodiesterase would linearize the c-di-GMP avoiding the formation of biofilm while encouraging motility. Nevertheless, Tec-Chihuahua proposes to arrest flagellar rotation with a glycosyltransferase. As these are intracellular proteins, the pathogen should be genetically modified and tested hoping for a descent. Afterwards, the commercial and technical viability of a theoretical biocontrol would be developed as real proposal.</p></div>
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<div class='column half_size'> <h2>TecCEM</h2> <ul> <li><b> Region:  </b>Latin America - Mexico</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>New Application</li><li><b> Poster: </b> Zone 5-295 </li> <li><b> Presentation: </b>Saturday - Room 306 - 2:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:TecCEM'>Silencing multiple Diaphorina citri genes using siRNA for control of Huanglongbing disease in citrus plantations.</a> <br>Huanglongbing disease (HLB) is caused by Candidatus liberibacter asiaticus (CLas), a phloem-limited bacteria, transmitted by the Asian citrus psyllid Diaphorina citri (ACP). Current HLB control methods include insecticides and antibiotics that present short-term solutions, that are not specific and may cause a negative impact in plants and the final product. The use of RNAi technology has been widely used in research of gene silencing. Team TEC CEM designed siRNAs targeting four different D. citri genes: Abnormal wing disc (Awd), Wingless (WNT), Superoxide dismutase 1 (CSD1) and Rac-like GTP-binding protein 1 (RacI) to prevent CLas infection and the spread of HLB. RNAi has been proposed as a control mechanism for D. citri, but has only been tested using long dsRNA, therefore we developed siRNAs to maximize the specificity, reducing off-targeting. To ensure effective delivery, siRNAs will be encapsulated using nanotechnology for their direct application to citrus plants.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>TECHNION-ISRAEL</h2> <ul> <li><b> Region:  </b>Asia - Israel</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 3-197 </li> <li><b> Presentation: </b>Sunday - Room 304 - 3:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:TECHNION-ISRAEL'>Tolegen: A preventative treatment for autoimmune disease and allergies</a> <br>Autoimmune disease and allergies are an increasingly common phenomenon in the Western world. An estimated 73 million people suffer from allergies and autoimmune disease in the United States. To date, many of these diseases lack treatment and pose an incredible financial burden on both the patients and society. We intend to design a preventative treatment for allergies and autoimmune disease by utilizing the innate system of Central Tolerance. We've designed a plasmid based platform that will allow inducible expression and display of target antigens on the membrane of Hematopoietic Stem Cells (HSCs). Hematopoietic progenitor cells (HPC-7) will be transfected with our plasmid and we will attempt to show apoptosis in an immature B cell model (WEHI-231) closely approximating the process of Central Tolerance. In the future this technology may be used to engineer HSCs harvested from cord blood and allow for a cost effective preventative treatment.</p></div>
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<div class='column half_size'> <h2>TecMonterrey GDA</h2> <ul> <li><b> Region:  </b>Latin America - Mexico</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 2-135 </li> <li><b> Presentation: </b>Friday - Room 311 - 3:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:TecMonterrey GDA'>PHAgave</a> <br>PHAgave' aims to synthesize polyhydroxyalkanoates (PHA), a form of bioplastic naturally produced by bacterial fermentation, from the available carbon sources in residues from the tequila production process through a recombinant E. coli strain. The study compares the metabolic speed for the PHA synthesis between Pseudomonas putida KT2440 and a recombinant E. coli with the genes for PHA synthesis (ACC, fabG, phaG, phaC1 and phaC2) for a continuous bioplastic production. This stage also includes the extraction of the PHAs from the intracellular medium in a more sustainable way than a chemical lysis.The main objective is to make the process efficient, clean, and with a high yield. The obtained bioplastic has multiple applications; for example, it can be used for the creation of disposable laboratory equipment and containers due to its resistance to heat and oils. A business model for the commercialization of our bioplastic is included.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Tel-Hai</h2> <ul> <li><b> Region:  </b>Asia - Israel</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Food & Nutrition</li><li><b> Poster: </b> Zone 5-262 </li> <li><b> Presentation: </b>Friday - Room 304 - 4:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Tel-Hai'>Wonder Wine</a> <br>The purpose of our project is to improve upon the quality of wine nutritional value production by way of genetically engineered yeast, aimed at several objectives. The first is spoilage of the wine due to the undesired presence of the Brettanomyces yeast. We intend to target this obstacle by secretion of Brett-specific toxins by our 'designer' yeast. Second, enhancing the health benefits of wine, specifically antioxidant content, by increasing presence of reservatrol. Third, lowering the glycemic index of wine while maintaining its flavor and quality by introducing the Miraculin molecule.</p></div>
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<div class='column half_size'> <h2>Tianjin</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 4-216 </li> <li><b> Presentation: </b>Saturday - Room 304 - 9:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Tianjin'>Romantic Switcher</a> <br>We developed a novel gene switcher based on the mating-type switch and the mating behavior of Saccharomyces cerevisiae, namely 'Mating Switcher'. Two groups of MATa haploid yeast with different functional genes initially work separately. Then by activating the inducible promoter in one group, the MATa yeast in this group will become MATα yeast to mate with another group. With vika/vox system, the original function can be shut off, and new function can be launched after mating. We applied our mating-type switcher to a controllable system of heavy metal enrichment for further disposal. To realize the separation of different ions in polluted water, we designed a gene circuit enabling the adsorption of different metal ions (Cu2+, Cd2+ ) in chronological order. And thanks to the flexibility and feasibility of our mating-type switcher, there will be more applications waiting us to exploit and develop.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>TJU China</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>New Application</li><li><b> Poster: </b> Zone 5-265 </li> <li><b> Presentation: </b>Friday - Room 306 - 4:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:TJU China'>Utilizing a Novel Infrared Fuorescent System to Track Intestinal Bacteria in Real Time</a> <br>In recent years, the researchers have revealed the key role of intestinal microbiota. There is an increasing number of evidences indicating that gut flora can really influence our thinking, mood, behavior, and feelings. However, there exists difficulties in tracking intestinal bacteria in a living body. This year we achieve this goal by using a novel fluorescent system. Several important enteropathogens and probiotics are on our list, including facultative anaerobe and obligate anaerobe, like EHEC O157:H7, Bifidobacterium longum and so on. We construct different shuttle vectors to express this fluorescent system and successfully prove that it works well. Through the expression system, bacteria with fluorescence can be detected in a living body, making in vivo imaging come true.</p></div>
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<div class='column half_size'> <h2>TMMU-China</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 1-66 </li> <li><b> Presentation: </b>Saturday - Ballroom A - 9:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:TMMU-China'>Development of Quorum Sensing Tool Kit for Gram-positive Bacteria</a> <br>Gram-positive bacteria comprise various kinds of microbes. Quorum sensing (QS) system can play diverse roles in response to bacteria population density, which makes it an intriguing tool for synthetic biologists. Most of the QS systems are relied on the N-acyl homoserine lactones (AHLs) based QS tool kit of Gram-negative bacteria, however, QS tool kit for Gram-positive bacteria has rarely reported. In this project, we want to develope a QS tool kit for Gram-positive bacteria. We will build this tool kit based on the Agr system from S.aureus, the PlcR-PapR system from Bacillus cereus, and the AimR-AimP system from the Bacillus subtilis bacteriophage Phi3T. We are going to test the utility of this tool kit in Bacillus subtilis and Lactococcus lactis. This QS tool kit will facilitate synthetic biologists to construct more sophisticated systems, both in Gram-positive bacteria and mixed microbial consortia.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>TNCR Korea</h2> <ul> <li><b> Region:  </b>Asia - Korea, Republic Of</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 2-137 </li> <li><b> Presentation: </b>Friday - Ballroom B - 4:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:TNCR Korea'>Transformation of Dipeptidyl peptidase-4(DPP-4) to Intestinal Gut Microflora: A possible alternative of 'Gluten-free Diet'</a> <br>Gluten-related disorders, including celiac disease(CD) and non-celiac gluten sensitivity, are found worldwide. Currently available therapy for CD patients, permanent gluten-free diet(GFD), has drawbacks of restricted nutrition and lifelong remission. Thus, we considered a non-dietary therapy that utilizes synthetic biology targeting the gut microflora. Dipeptidyl peptidase-4(DPP-4) gene, which is known to decompose the gluten, was inserted to the iGEM provided vectors through infusion cloning based on the 3A Assembly method. Western blot analysis using Flag-tag was conducted to verify the expression of the target gene. Because excessive expression of DPP-4 may induce stress and inflammation, we added Anderson promoter that differentially regulates gene expression in three levels to achieve optimal expression of DPP-4 of an individual. The transformed dominant gut bacteria can be embedded into a bacteria-favorable yogurt for the subsequent probiotic administration. This study proposes a potential novel treatment of gluten-related disorders through recombinant gut bacteria</p></div>
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<div class='column half_size'> <h2>TokyoTech</h2> <ul> <li><b> Region:  </b>Asia - Japan</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Information Processing</li><li><b> Poster: </b> Zone 2-124 </li> <li><b> Presentation: </b>Sunday - Room 306 - 9:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:TokyoTech'>Coli Sapiens: Co-Culture System of Human Cells and Bacteria Sustained by Cross-Kingdom Talk</a> <br>Gene therapy has been expected in cancer therapy for years. An interesting therapy for cancer using anaerobic bacteria as a carrier has been developed, but after the anaerobic cancer region is diminished, the bacteria cannot stay there anymore. If anti-cancer bacteria can stay in affected area, they promptly respond to cancer recurrence. Co-existence of bacteria and host cells should be quite difficult in our body or human cell culture systems, because bacteria grow so fast. It is important to control bacterial proliferation in them. So, we try to establish a new living system that human cells control the population of bacteria by engineering the both cells by creating two signaling pathways of 1) Bacteria-Mammals and 2) Bacteria-Plants. We expect that this system will lead to a new experimental approach and a new medical therapy. Moreover, we imagine about 'A boundary between cellular groups and living organisms' with general public.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Tongji China</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>New Application</li><li><b> Poster: </b> Zone 2-100 </li> <li><b> Presentation: </b>Friday - Room 306 - 3:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Tongji China'>A new use of UAS/Gal4 system for pest control</a> <br>The spread of many diseases is related to mosquitoes, such as dengue, Zika, and chikungunya, which pose a threat to human health. And many pests also have a negative impact on agricultural production. Our project is focusing on addressing the growing number of pest-induced disasters and outbreaks by changing sexual orientation. We use Drosophila melanogaster as chassis organisms, and use the classic UAS/Gal4 system to regulate this character. What's more, we also build models to simulate the effects. Compared to other traditional ways, this method is heritable and continuable, and causes less impact on the ecosystem. In addition, the gene will be activated in summer, when pests thrived. We hope that our project will provide a new way to solve the problems caused by pest.</p></div>
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<div class='column half_size'> <h2>Toronto</h2> <ul> <li><b> Region:  </b>North America - Canada</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 1-55 </li> <li><b> Presentation: </b>Friday - Room 312 - 12:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Toronto'>Light, Lac and LOV: A light-regulated switch for control of gene expression</a> <br>iGEM Toronto has developed a genetic switch that will allow stringent control of transcriptional activity using LacILOV, a novel light-regulated transcriptional modulator, and cI, a viral repressor. Using blue light as an input, our tool will enable users to manipulate desired gene outputs. As a proof of the utility of our switch, we propose a system that will permit spatiotemporal control of CRISPR activity using blue light. By integrating anti-CRISPR proteins and sgRNAs as our outputs, we demonstrate the applicability of our design to CRISPR-Cas9 gene editing technology. Given the foundational nature of our project, we have devised a guide that will aid researchers in considering the ethical, legal and socio-economic implications of the various applications of our system. Using human gene editing as an example, we aim to create a framework that facilitates reflexive dialogue, incorporating feedback from various potential stakeholders.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>TP-CC San Diego</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 2-149 </li> <li><b> Presentation: </b>Sunday - Ballroom A - 3:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:TP-CC San Diego'>Cancer Research Utilizing CRISPR based ecDNA Modification</a> <br>Cancer, a genetic disease resulting in uncontrollable cell growth, is mostly caused by somatic mutations acquired throughout an individual's lifetime. Because it induces the increased expression of growth related genes, oncogene amplification is one of the driving forces of cancer cell replication. Recently, it was discovered that some oncogenes resided on extrachromosomal DNA (ecDNA). Like the DNA on chromosomes, ecDNAs are double stranded. A key difference, however, is the circular shape of ecDNAs; they are able to randomly distribute because they do not have centromeres, which increases heterogeneity in daughter cells. This can cause the cancerous tumors to develop faster resistance to current treatments. To target the ecDNA, we used CRISPR technology to create double strand breaks specifically in the ecDNA. Because ecDNA causes oncogene copy number to increase exponentially, utilizing CRISPR to create breaks in ecDNA decreases cancer cells' replication speed.</p></div>
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<div class='column half_size'> <h2>Tsinghua</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Food & Nutrition</li><li><b> Poster: </b> Zone 1-71 </li> <li><b> Presentation: </b>Sunday - Room 311 - 1:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Tsinghua'>YeasyAFT: An easy-to-use biosensor of aflatoxin based on yeast two-hybrid assay</a> <br>We engineered yeasts to be biosensors of aflatoxin (AFT), a carcinogen to human. Often produced by molds when foods decay, AFT is easily found in everyday foods such as grains, oil and milk. However, its detection remains expensive and inconvenient, requiring special equipment. We developed a biosensor of aflatoxin easy for household use which gives a warning of AFT levels beyond safety limit in oil and milk. Utilizing the yeast two-hybrid (Y2H) assay, we fused two partial antibodies (single-chain variable fragments) targeting aflatoxin with Y2H elements to drive the expression of the reporter gene in response to AFT. The reporter is a hexose transporter gene linking the level of AFT detected to the concentration of glucose in medium, easily read out by a glucometer. Thus we combine the sensitivity of antibody reaction, flexibility of Y2H assay and convenience of glucometer readout to facilitate household detection of AFT in everyday foods.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Tsinghua-A</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Information Processing</li><li><b> Poster: </b> Zone 4-252 </li> <li><b> Presentation: </b>Sunday - Room 306 - 10:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Tsinghua-A'>E.coli War</a> <br>During a war, what makes one side outcompete the other? Is it the more powerful weapons, more sufficient logistic supply or better cooperation and communication? Our bacteria can tell! Here we devise an interesting interactive system with E.coli from different 'sides', with each of them incorporated with functionally independent roles including warrior, farmer and beggar, based on certain gene circuit and the mechanism of quorum sensing. By combining experimenting and modeling, we monitor the ratio and capability of each category of individuals to obtain the factors to facilitate the victory of a group. With our efforts to explore synthetic biology as our tool, more ecological rules will be tested and more stories about inter- and inner-species cooperation and competition will be uncovered. From these, we can have a better understanding at the rules of competition or 'warfare' in the ecosystem as well as in the human society.</p></div>
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<div class='column half_size'> <h2>TU Darmstadt</h2> <ul> <li><b> Region:  </b>Europe - Germany</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Manufacturing</li><li><b> Poster: </b> Zone 2-96 </li> <li><b> Presentation: </b>Friday - Room 310 - 10:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:TU Darmstadt'>ChiTUcare</a> <br>Over the course of the last decades wound infections have become a major issue in daily medical routine. In this context we present a method combining continuous wound screening with next generation wound care. To accomplish fast wound screening, we introduce a tool to detect individual bacterial proteases. Here, non-toxic fluorophores are linked to chitosan oligomers by sequence-specific peptide linkers within a hydrogel matrix. This method excels by being painless, quick and non-invasive. Chitosans show antimicrobial and wound-healing supportive properties, making chitosan oligomers excellent plaster materials and fluorophor-carriers. De novo biosynthesis in E. coli makes it possible to produce chitosan oligomers with different defined deacetylation patterns which differ in their bioactivity and are therefore useful for various applications for instance plant protection and medical materials. For this purpose different chitindeacetylases, with unique deacetylation patterns can be individually expressed in E. coli by orthogonal regulation via a split-T7-RNAP regulation system.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>TU Dresden</h2> <ul> <li><b> Region:  </b>Europe - Germany</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 2-103 </li> <li><b> Presentation: </b>Sunday - Room 311 - 12:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:TU Dresden'>EncaBcillus It's a trap!</a> <br>Synthetic biology wants to go beyond the pure biological by integrating concepts from chemistry or physics into the living world. At this interphase, our project wants to introduce Peptidosomes as a new fundamental approach for generating and applying encapsulated bacteria. These spheres possess advantageous properties like stability in different media and a mesh-like structure that allows for the selective exchange of compounds via diffusion. Therefore, we are able to benefit from the entrapped cells' abilities, while ensuring that they are not released into their surroundings. Using the powerful genetics of <i>Bacillus subtilis</i> and its secretory capabilities we demonstrate communication and cooperation between separately encapsulated bacterial populations as well as the environment. Peptidosomes can be further enhanced by incorporating magnetic or biological beads which can be functionalized with proteins into their peptide-based shell. With this unique setup, we provide a whole new universe of applications to the iGEM community.</p></div>
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<div class='column half_size'> <h2>TU-Eindhoven</h2> <ul> <li><b> Region:  </b>Europe - Netherlands</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>New Application</li><li><b> Poster: </b> Zone 3-203 </li> <li><b> Presentation: </b>Saturday - Room 306 - 2:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:TU-Eindhoven'>GUPPI: Gelation Using Protein Protein Interactions</a> <br>Cancer is a major cause of death worldwide. With our project, GUPPI, we hope to set the basics of a system that can encapsulate the cancerous tissue to prevent metastasis in an early stage. GUPPI utilizes Protein Protein Interactions and is inspired by the formation of membraneless organelles by multivalent interactions. A designed protein scaffold and its binding partner, both having sequential repeating units, will respond to an inducer and form a gel-like structure. We envision that later on, GUPPI can respond to extracellular conditions that will act as an inducer of the gelation to specifically target and encapsulate the desired tissue. The GUPPI system has some major advantages, such as the tunability of the protein's multivalency and the possible adaptation of interactions. Furthermore, a rule-base-model is developed to predict, verify and characterize the wet-lab experiments and act as an additional support.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>TUDelft</h2> <ul> <li><b> Region:  </b>Europe - Netherlands</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>New Application</li><li><b> Poster: </b> Zone 1-65 </li> <li><b> Presentation: </b>Friday - Room 302 - 2:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:TUDelft'>CASE13A - Cutting our way through the antibiotic resistance problem</a> <br>The existing methods to detect the presence of a specific RNA sequence in a sample are laborious and require both trained personnel and sophisticated lab equipment. Inevitably, these restrictions limit the development of diagnostic detection methods based on specific RNA sequences. Here, we aimed to overcome these limitations by using the CRISPR-Cas protein Cas13a. Once this recently characterized protein binds to its complementary target, it unspecifically cleaves all surrounding RNA. Utilizing this property we designed a system for the detection of antibiotic resistance genes in agricultural pathogens, aiming to combat the global rise of antibiotic resistance. We developed a procedure to extract biological samples and detect RNA sequences of interest by converting the collateral cleavage activity of Cas13a to a read-out visible to the naked eye. Through ongoing interaction with direct stakeholders, we made substantial progress towards making not only durable components but a cheap, safe and reliable detection method.</p></div>
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<div class='column half_size'> <h2>Tuebingen</h2> <ul> <li><b> Region:  </b>Europe - Germany</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 2-134 </li> <li><b> Presentation: </b>Friday - Room 309 - 10:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Tuebingen'>The Advanced Trojan Horse - a new approach for designing resistance-specific antibiotics</a> <br>The rising amount of microbial resistances urge for innovation and new therapeutics. Many substances already available in the lab are potent as antibiotics but cannot be used in humans due to toxicity or problems in delivery. Therefore, we used aminocoumarins and created a new derivative via a semi-biosynthetic synthesis approach. The introduction of specific modifications changes the pattern of interaction with proteins while also improving the chemical properties of aminocoumarins. Our modification specifically targets ß-lactam resistant pathogens. For proof of principle, we developed a suitable test system consisting of an E.coli-based pathogen model and a toxicity assay. Additionally, we performed an in silico prediction of changes in binding affinity to target proteins. In conclusion, we created an antibiotic that is only activated by ß-lactam resistant pathogens itself via enzymatic cleavage while not affecting other cells in the human body - the advanced Trojan horse is set free.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>TUST China</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Manufacturing</li><li><b> Poster: </b> Zone 4-241 </li> <li><b> Presentation: </b>Saturday - Room 304 - 3:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:TUST China'>Research into Increasing Yields of Bacterial Cellulose via Methods of Synthetic Biology</a> <br>Bacterial cellulose is a novel nano-material synthesized by microbiology. BC has a unique three-dimensional net structure with high degree of biological histocompatibility and degradability. Therefore, it has a wide range of application.However,low yield and high cost of producing BC makes it way behind reaching practical need of production and application.Hence, we intended to implement synthetic biology to improve the yield of bacterial cellulose. 1.Refinement of fermentation conditions. It has been proved by research that G.xylinus can reach its highest yield of bacterial cellulose when pH=4.8.Therefore, we intend to control the continually descending pH of the environment during fermentation and maintain its pH to around 4.8. 2.Partial alternation of carbon flux distribution. We hope we can redirect and improve the carbon flux distribution to the pathway of producing bacterial cellulose via over-expressing some key enzymes during the fermetation of G.xylinus.</p></div>
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<div class='column half_size'> <h2>U of Guelph</h2> <ul> <li><b> Region:  </b>North America - Canada</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Manufacturing</li><li><b> Poster: </b> Zone 3-195 </li> <li><b> Presentation: </b>Saturday - Room 304 - 4:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:U of Guelph'>One OXCellent FRC'n Project</a> <br>The University of Guelph's project focuses on the development of an enzyme-based cleaning method for the removal of calcium oxalate scale (commonly called beerstone) from the inside of beer brewing vats. Beerstone is incredibly insoluble and difficult to remove, with common cleaning methods involving the use of caustic acids. Our team hopes to use the enzymes Formyl-CoA Transferase (FRC) and Oxalyl-CoA decarboxylase (OXC) from Oxalobacter formigenes's oxalate degrading metabolism to break down beerstone. This year's aspect of the project focused on cloning frc and oxc into E.coli DH5a using pET-28a. This required conducting site directed mutagenesis to add the PstI cut site to the pET-28a vector. Future experimentation will include cloning into BL21, expressing and characterizing FRC and OXC, and the development of an enzyme-based cleaning solution.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>UAlberta</h2> <ul> <li><b> Region:  </b>North America - Canada</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 4-234 </li> <li><b> Presentation: </b>Saturday - Room 302 - 11:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:UAlberta'>The RISE System: Recombinant protein Interaction Screening and Enrichment System</a> <br>Protein therapeutics are a front line approach to treatments for cancer, infections, autoimmune disorders, and other diseases. Developing new protein-based therapeutics require methodologies, particularly directed evolution, that enable the engineering of protein-protein interactions with high specificity and affinity. Due to the iterative mutagenesis required for directed evolution, optimizing protein interactions can become tedious. To enhance enrichment of desired variants Team UAlberta designed a protein-protein interaction assay based on the reconstitution of adenylate cyclase in Escherichia coli to accelerate screening for successful variants. We have built two constructs to act as reporters for our system. The first contains genes required for gas vesicle formation and bacterial buoyancy while the second encodes for fluorescent proteins. Our current efforts are focused on characterizing and validating our system using well-characterized protein interactions and our reporters.</p></div>
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<div class='column half_size'> <h2>UC San Diego</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>New Application</li><li><b> Poster: </b> Zone 4-219 </li> <li><b> Presentation: </b>Friday - Room 310 - 11:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:UC San Diego'>SynEco: A Xenobiotics-derived Co-culture System of S. elongatus and E. coli for Applications in Bioproduction</a> <br>Currently, the biofuel industry uses glucose as feedstock for E. coli. Methods to prevent contamination require expensive process sterilization or excess antibiotics dosage which become ineffective over time by promoting antibiotic resistance. In our project, we use a xenobiotic approach to engineer autotrophic cyanobacteria, Synechococcus elongatus PCC 7942, to produce the rare sugar D-tagatose in a five-step enzymatic pathway. After detecting tagatose via HPLC, we will seek to engineer a transporter for tagatose secretion, a mechanism that is currently not known. The cyanobacteria will be harnessed in conjunction with genetically engineered E. coli that can metabolize tagatose; by using a multifaceted approach, we could leverage xenobiotic technology in a unique way to create a novel production platform that uses tagatose as a nutrient source and an anti-contamination agent. Because our system utilizes photosynthetic cyanobacteria to cheaply produce the rare sugar carbon source, our co-culture system is both self-sustainable and cost-effective.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>UCAS</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Food & Nutrition</li><li><b> Poster: </b> Zone 2-155 </li> <li><b> Presentation: </b>Saturday - Room 312 - 10:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:UCAS'>We Fit Fish</a> <br>Aquatic products provide Chinese people with gourmet foods as well as high-quality proteins. In China, freshwater aquaculture products contribute up to 68% to total aquaculture products. Nevertheless, in freshwater aquaculture, there exists a major problem of excessive ammonia nitrogen in pond water, which is toxic to aquatic creatures. Although ammonia nitrogen concentration is critical in water quality evaluation, few farming ponds in China are equipped with ammonia monitoring systems, causing fish diseases and reduced aquaculture production. This year, UCAS iGEM team engineered E.coli to sense ammonia in pond water and alert farmers to high ammonia concentration. Furthermore, to remove the excess nitrogen from water, we introduced human xanthine oxidase to transfer ammonia into uric acid precipitation. Consequently, breeding density can be raised and farming water can be recycled, thus reducing costs and increasing benefits. Our uric acid-producing microorganism can also serve as a platform to select effective drugs for gout.</p></div>
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<div class='column half_size'> <h2>UCC Ireland</h2> <ul> <li><b> Region:  </b>Europe - Ireland</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Food & Nutrition</li><li><b> Poster: </b> Zone 4-206 </li> <li><b> Presentation: </b>Saturday - Room 309 - 2:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:UCC Ireland'>MOOnshine; biosensors for antibiotics and methanol</a> <br>To ensure consumer safety, all processed food and beverages are subject to rigorous testing for contaminants that are hazardous to human health. This testing can be expensive, inaccessible and time-consuming. Since these sophisticated tests are often limited to large-scale producers, local dairy farmers, microbreweries and home-brewers remain vulnerable to penalties and poisoning should the level of contaminants in their products fall outside the regulatory guidelines. Our iGEM project aims to create a biosensor, specifically to detect antibiotic residues in milk and methanol in alcohol. The universal readout will incorporate a blue chromoprotein, AmilCP, which will correlate with the concentration of the contaminant and be quantified with a portable colourimetric device linked to smartphones. A cell-free system will be utilised to circumvent the risks associated with the use of genetically-modified live bacteria outside the laboratory.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>UChicago</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>New Application</li><li><b> Poster: </b> Zone 2-154 </li> <li><b> Presentation: </b>Sunday - Room 310 - 2:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:UChicago'>Expression of Centromeric Activity by a Chromosomal Integration Plasmid in E. coli and Pichia pastoris</a> <br>Centromeric plasmids combine the stability of a chromosome and the flexibility of a plasmid to create the perfect tool for the biotechnical industry. Pichia pastoris, a strain of yeast often used in this field, lacks a centromeric plasmid, which limits the research that can be done with this species. The University of Chicago iGEM Team, GeneHackers, is conducting research to create a centromeric plasmid for Pichia pastoris. Such a plasmid that will be useful for a multitude of purposes, including bioengineering and industrial applications. We aim to find and incorporate the minimal sequence within the genome of Pichia pastoris that allows our modified version of the iGEM plasmid psB1C3 to behave as part of the yeast's chromosomes. The combination of DNA from both E. coli and Pichia pastoris will lead to the creation of a yeast centromeric plasmid that can act as a shuttle vector between the two organisms.</p></div>
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<div class='column half_size'> <h2>UChile Biotec</h2> <ul> <li><b> Region:  </b>Latin America - Chile</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 1-64 </li> <li><b> Presentation: </b>Saturday - Room 312 - 3:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:UChile Biotec'>Bimatox: A biosensor made of aptazyme to help people detect marine toxins in their environment</a> <br>BiMaTox is a biosensor that detects marine toxins that are produced during harmful algal blooms, also known as red tides. Of these toxins, saxitoxin is the most-deadly, as it attacks the human nervous system impeding synapse formation. The biosensor consists of a cell-free cellulose matrix device that displays a color in the presence of the toxin. This color is produced by the aptazymes which are contained within the device. The aptazyme consist of a specific toxin aptamer connected to a DNAzyme. When the toxin binds to its specific aptamer, the peroxidase activity of DNAzyme is triggered and produces the oxidation of a compound called ABTS, which generates a color that is readily visible to the human eye. The device is constructed in such a way that it is easy and simple to use, with the aim that, for example, fishermen can know when there are toxins in their fishing area.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>UChile OpenBio-CeBiB</h2> <ul> <li><b> Region:  </b>Latin America - Chile</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 3-187 </li> <li><b> Presentation: </b>Sunday - Room 311 - 4:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:UChile OpenBio-CeBiB'>Greenhardtii Project</a> <br>During the year 2015, the worldwide mean of atmospheric CO2 concentration surpassed the threshold of 400 ppm and will keep increasing. But can CO2 be thought of as an exploitable resource? Greenhardtii Project is an initiative that searches to generate a green microalgae with optimized capacity of carbon uptake, using this as cellular fuel to use it as a production platform of desired biomolecules. The optimization of the Calvin Cycle in our Greenhardtii platform (Green + Chlamydomonas reinhardtii) is produced by the expression of a cyanobacteria enzyme. Moreover, test of the kinetic behavior of a regulable promoter and pathways inhibition will be made in a mathematical model. To Greenhardtii Project, linking science with society is indispensable, so the design of a photobioreactor is being developed, in order to propose instalations in one of the sectors with the worst air standards in Chile</p></div>
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<div class='column half_size'> <h2>UCL</h2> <ul> <li><b> Region:  </b>Europe - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 1-87 </li> <li><b> Presentation: </b>Friday - Ballroom B - 2:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:UCL'>Light Induced Technologies (LIT): Advancing the Optical Control of Cellular Mechanisms</a> <br>We are developing optogenetic tools to improve two areas of human life: architecture and regenerative medicine. In contrast to current mechanical and chemical methods for gene control, our light-based strategies allow for the precise spatiotemporal and non-invasive control of complex gene circuits. To minimize the usage of electricity for illumination and fossil fuels for building materials, we are testing the feasibility of optogenetics to provide an eco-friendly and sustainable alternative. We are engineering bacterial cells that i) control their bioluminescence in response to day/night cycles and ii) can be directed by light to form physical structures out of biodegradable plastic. Additionally, to address the scalability and speed issues in tissue engineering, we are developing an optical guidance system for inter-cell adhesion and directed gene expression of mammalian cells for tissue generation. This will enable fast in situ cell adhesion for tissue-specific organ healing.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>UCLouvain</h2> <ul> <li><b> Region:  </b>Europe - Belgium</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>New Application</li><li><b> Poster: </b> Zone 2-151 </li> <li><b> Presentation: </b>Sunday - Room 310 - 2:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:UCLouvain'>BactaSun : Detecting UV with bacteria</a> <br>Nowadays, exposition to harmful UV rays has led to an ever growing number of skin cancer cases, amongst other sun-related diseases. Our aim is to design a biobadge detecting excessive UV exposure and therefore warn us to seek sun protection should it become necessary. This badge would work as a capsule holding E. coli cells, changing colours as the UV intensity increases. Therefore, we investigated two approaches using photocaged tyrosine (o-nitrobenzyl tyrosine). In both cases, UV-rays will release the tyrosine and enhance a reporter signal. (1) Starting with a tyrosine auxotroph E. coli strain, a reporter RFP will be synthetized once tyrosine is liberated from its cage. (2) Using a photocaged peptide and a specific transcription factor called ComR, we also aim at UV-controlling the expression of the reporter gene. The capsule would also work as a safe and reliable containment, destroying the engineered microorganisms once the biobadge is discarded.</p></div>
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<div class='column half_size'> <h2>UConn</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Energy</li><li><b> Poster: </b> Zone 4-244 </li> <li><b> Presentation: </b>Saturday - Ballroom A - 2:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:UConn'>An Algaeneious Approach to Continuous Cultures for Biofuel Production</a> <br>Biofuels are a promising, nearly carbon-neutral alternative fuel source, often derived from algal lipid production. Previous methods of fuel harvest have relied on destructive means of extraction, but we aim to upregulate the excretion of lipids, allowing for potential harvest by physical separation. Our goal is to enhance the algal lipid production and extracellular transport in Nannochloropsis oceanica, a well characterized species with high lipid content. This will be achieved by upregulating the endogenous lipid production enzymes of the cell with high expression promoters and transfecting algae with an ATP binding cassette transporter from Arabdopsis thaliana. Next steps will include developing a system to physically separate excreted lipid from the algal biomass, while maintaining a productive continuous culture.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>UCopenhagen</h2> <ul> <li><b> Region:  </b>Europe - Denmark</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 4-233 </li> <li><b> Presentation: </b>Saturday - Room 310 - 2:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:UCopenhagen'>Incell: a platform for synthetic endosymbiosis</a> <br>Incell is a new synthetic biology platform with near future applications in research, industry and services. We are rewriting nature's code for endosymbiosis and transforming an evolutionary phenomenon into a technology compatible with standard biological parts. Our vision is to produce synthetic hostendosymbiont systems. We set out with a trinity of experiments intrinsic to the synthetic reconstruction of endosymbiosis. First, creating and sustaining dependence between a host and its endosymbionts by fulfilling the amino acid requirement of an auxotrophic host. Next, to build a modular system of cell-penetrating peptides for protein transport of host nuclear encoded proteins into an endosymbiont, recapitulating a crucial feature of the natural process. Finally, regulating the number of endosymbionts within a host using a CRISPR-Cas system for control of replication. Further ahead we see a safe, customisable, sustainable technology providing biological solutions to present and future challenges in biotechnology, agriculture and medicine.</p></div>
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<div class='column half_size'> <h2>UCSC</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Manufacturing</li><li><b> Poster: </b> Zone 4-211 </li> <li><b> Presentation: </b>Saturday - Room 304 - 4:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:UCSC'>Bugs Without Borders</a> <br>Much of the world struggles with inadequate access to essential medicines and nutrition due to high pharmaceutical prices and unreliable distribution. Our solution is to decentralize production of these resources by engineering the robust cyanobacterium, Arthrospira platensis, to produce essential medicines and supplements self-sustainably, photosynthetically, and on-site at healthcare facilities. However, due to insufficient research into the genetics of A. platensis, we have undertaken two separate engineering endeavors in the metabolically similar Synechococcus elongatus PCC 7942 to produce acetaminophen and human-usable vitamin B12. The genes for acetaminophen production, 4ABH and nhoA, and those for B12 production, ssuE and bluB, have been transformed into PCC 7942 with the aim of method validation and subsequent migration to A. platensis, once a genetic system has been established. In addition, we are performing a whole genome sequencing of A. platensis UTEX 2340 to further this research and its potential medical applications.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>UESTC-China</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 5-257 </li> <li><b> Presentation: </b>Sunday - Room 306 - 11:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:UESTC-China'>Tobacco. Degradation. TCP.</a> <br>1,2,3-Trichloropropane (TCP) is a new organic pollutant which has been introduced into our environment as a consequence of industrial waste disposal and widespread open use in agriculture.It's reported that TCP is intended to be pathogenic,carcinogenic and quite persistent in environment.To solve the pollution of TCP,the predecessors have tried to carry out TCP degradation by using E.coli and immobilized enzymes.Although its degradation efficiency is pretty high,long-term sustained environmental remediation outcomes couldn't be achieved.So as to solving this problem,this year we choose tobacco to design a phytoremediation system for TCP. Three kind of enzymes,DhaA in Rhodococcus sp, HheC and EchA derived from Agrobacterium radiobacter AD1,are transformed into tobacco to degrade the TCP into non-toxic and harmless glycerin in the soil and sewage,and to achieve the sustained environmental remediation.</p></div>
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<div class='column half_size'> <h2>UFlorida</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 4-248 </li> <li><b> Presentation: </b>Friday - Room 302 - 9:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:UFlorida'>Tryptophol Synthesis for Mitigating Amphibian Chytridiomycosis</a> <br>Amphibian populations worldwide are threatened by the disease Chytridiomycosis, which is caused by the aquatic fungal pathogen Batrachochytrium dendrobatidis (Bd). Chytridiomycosis often leads to death; however, a few species of amphibians are resistant to the Chytridiomycosis infection. The resistance is conferred by symbiotic bacteria present on their skin that produce antifungal metabolites. The UFlorida iGEM team seeks to develop a new treatment for Chytridiomycosis based on these antifungal metabolites. One such antifungal compound, tryptophol, has been shown to be effective at combating Bd at low doses. Tryptophan is converted to tryptophol by three enzymes, Aromatic Amino Acid Aminotransferase II, 2-oxo Acid Decarboxylase, and Alcohol Dehydrogenase I. Our team modified E.coli with the genes comprising the pathway for tryptophol synthesis. The UFlorida team expects to demonstrate that the tryptophol from the genetically modified E. coli will show antifungal activity against the Chytridiomycota family as an antifungal treatment for amphibians.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>UGA-Georgia</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Food & Nutrition</li><li><b> Poster: </b> Zone 3-190 </li> <li><b> Presentation: </b>Sunday - Room 311 - 2:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:UGA-Georgia'>Development of an Aptameric Biosensor for Aflatoxin B1 in Peanuts</a> <br>The University of Georgia's 2018 iGEM team aims to engineer a biosensor for the detection of aflatoxin B1, a harmful mycotoxin peanut contaminant. As Georgia produces more peanuts than any other state in the United States, UGA iGEM recognizes that aflatoxin B1 contamination in peanuts is a regionally important issue. While other iGEM teams have developed detection methods for aflatoxin B1, these methods lack high specificity. To achieve a highly-specific biosensor, UGA iGEM has incorporated an aflatoxin B1 aptamer that has previously been used for an in vitro detection assay. By mimicking this system in vivo, UGA iGEM is developing a cost-effective two-component riboswitch aflatoxin biosensor. This technology could be utilized in the manufacturing process to cut costs in recognizing infected peanuts. Moreover, by creating an affordable aptasensor, this will both make peanut crop growth more accessible to developing countries and decrease aflatoxin-related deaths worldwide.</p></div>
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<div class='column half_size'> <h2>UiOslo Norway</h2> <ul> <li><b> Region:  </b>Europe - Norway</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>New Application</li><li><b> Poster: </b> Zone 2-160 </li> <li><b> Presentation: </b>Friday - Room 302 - 2:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:UiOslo Norway'>Achieving lasing in a GFP protein solution and yeast cells</a> <br>A bio-laser, which is a laser with a biological gain medium, was first described in 2011. In our project, we want to create and explore such a bio-laser. To achieve this, we will first attempt to use an external light source and mirrors to get stimulated light amplification in a solution of fluorescent proteins, and use that as a functional proof of concept. The second part is to transform S. Pombe yeast cells with said fluorescent protein, and try to achieve lasing in a solution of live yeast cells.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>UIOWA</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Manufacturing</li><li><b> Poster: </b> Zone 1-73 </li> <li><b> Presentation: </b>Friday - Room 306 - 12:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:UIOWA'>Development of a 3-Hydroxypropionic Acid Biosensor</a> <br>Many industrial manufacturing processes utilize the metabolite 3-hydroxypropionic acid (3-HP) as a platform chemical for the synthesis of complex biofuels and plastics. Current companies engineering bacteria to overproduce 3-HP utilize high-performance liquid chromatography to assay concentrations, which is a precise method for established bioreactors but time-consuming for testing experimental strains. Recent studies identified 3-HP responsive genes in <i>Pseudomonas denitrificans</i> and <i>Pseudomonas putida</i>, which could be used as a viable biosensor for real-time monitoring of 3-HP concentrations in vivo. Our ongoing research project utilizes the 3-HP responsive genes found in <i>P. putida</i> and <i>P. denitrificans</i> as biological reporters which express luciferase in the presence of 3-HP. We will then adapt this system to <i>Bacillus subtilis</i>, which has shown potential as a 3-HP producer for industrial processes due to its high tolerance for concentrations of 3-HP that are toxic in other microorganisms. Our biosensor is a useful tool for metabolic engineering research.</p></div>
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<div class='column half_size'> <h2>UIUC Illinois</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Manufacturing</li><li><b> Poster: </b> Zone 1-69 </li> <li><b> Presentation: </b>Sunday - Room 304 - 9:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:UIUC Illinois'>Sweet Giblets: A Homemade Gibson Assembly Recipe</a> <br>The aim of this project is to lower the cost of a common recombinant DNA technique, the Gibson Assembly. The concept revolves around the construction and expression of plasmids with DNA polymerase and DNA ligase as the insert genes. The constructed plasmids for these two proteins are transformed into DH5α cells for high cloning and then transformed into BL21(DE3) for high gene expression and production of the proteins of interest. Cell lysate from transformed BL21(DE3) cells is used as DNA ligase and DNA polymerase and the base level of exonuclease present naturally in the cell lysate serves as the T5 exonuclease. Using different combinations of the cell lysates for the DNA ligase and DNA polymerase, a plasmid with known sequence and properties is assembled to test the concept. Sequence results obtained after each trial are recorded as a measure of success or a need to modify the lysate ratios.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>ULaVerne Collab</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 1-35 </li> <li><b> Presentation: </b>Saturday - Ballroom A - 12:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:ULaVerne Collab'>S.O.S! Save Our Seas!</a> <br>Corals are responsible for sustaining a quarter of the ocean's biodiversity. However, due to natural biochemical processes and human activities, ocean temperatures are rising by 1-2% every year. This results in coral bleaching, the loss or expulsion of zooxanthellae from its tissue, due to the accumulation of reactive oxygen species (ROS) produced from photosystem I. ROSs can be converted to less toxic chemicals by superoxide dismutases (SODs), however it does not react as quickly with ROSs as does other chemicals in the cell. Our research aims to reduce the production of ROSs by characterizing three SODs. We will determine which SOD is most efficient based on its placement in the cell under abiotic stresses, such as light and heat. We will also create a chassis for Symbiodinium and construct biobricks for each individual part. In addition, a controlled water tank will be created to simulate environmental conditions.</p></div>
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<div class='column half_size'> <h2>UMaryland</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 5-271 </li> <li><b> Presentation: </b>Sunday - Room 309 - 1:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:UMaryland'>An Apeeling Solution to Panama Disease In Bananas</a> <br>Panama disease, caused by the fungus Fusarium oxysporum, poses a major threat to the world's banana population. Experts confirm that the most common banana cultivar could be wiped out, resulting in major agricultural and economic consequences. Our goal is to combat F. oxysporum with transgenic bacteria that sense fusaric acid, a toxin released by F. oxysporum, and respond by producing and secreting thaumatin like protein (TLP), an antifungal agent found in plants. Transferring the final genetic circuitry to Bacillus amyloliquefaciens, a symbiont associated with the roots of the banana plant, will provide a soil additive capable of protecting banana crops from this threatening disease. This system can be tuned with a Cas9 mutagenesis screening method we developed. Finally, to increase awareness of the role of synthetic biology in protecting food and water, we fabricated an inexpensive 'lab-in-a-box' system suitable for high schools along with a bacterial based metal detection system.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>UNBC-Canada</h2> <ul> <li><b> Region:  </b>North America - Canada</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 4-231 </li> <li><b> Presentation: </b>Sunday - Room 312 - 2:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:UNBC-Canada'>MRSAway</a> <br>Antibiotic resistance is one of the largest issues facing modern medicine today. Of particular importance is the lethal Methicillin-resistant Staphylococcus aureus, or MRSA. We propose to use sRNA-mediated gene silencing as a substitute for antibiotics to target an array of essential genes in MRSA: mecA, secA, glmM, and ddl. First, we identified a dsRNA-binding chaperone, Hfq, which acts to stabilize the sRNA-mRNA duplex in order to recruit RNase III to degrade the dsRNA. We then designed complimentary sRNAs for each mRNA target and tested the affinity of Hfq to our custom designed (AU)7A binding region on the sRNAs using a fluorescence polarization assay. The number of ribonucleotides cleaved from the binding region of Hfq via RNase III was determined via alkaline hydrolysis and long-format PAGE. Finally, Hfq and sRNA were co-transformed on a single vector to test gene knockdown efficiency.</p></div>
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<div class='column half_size'> <h2>UNC-Asheville</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 2-115 </li> <li><b> Presentation: </b>Sunday - Room 312 - 11:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:UNC-Asheville'>TCEasy</a> <br>The EPA-designated CTS Superfund site in Asheville, NC is polluted with trichloroethylene (TCE), linked to the development of carcinomas and kidney cancer. This organic solvent has been shown to be degraded by soluble methane monooxygenase (sMMO), a protein complex expressed by Methylococcus capsulatus. Using a theoretical metabolic pathway on the EAWAG biodegradation database, which includes sMMO and a haloacid dehalogenase (dhlB) from Xanthobacter autotrophicus, our team is attempting to fully degrade TCE to glyoxylate. Our team aims to express these proteins, in addition to the chaperone protein complex GroEl/Es, in one plasmid under the PLlac 0-1 promoter and upstream of T1 and T7 double terminator region. The metabolic pathway will be assembled using Gibson assembly in a standard iGEM vector containing chloramphenicol resistance. Once assembled, JM109 E.coli expressing this plasmid will be tested for ability to degrade TCE using purge and trap mass spectrometry</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>UNebraska-Lincoln</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 2-98 </li> <li><b> Presentation: </b>Saturday - Room 304 - 10:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:UNebraska-Lincoln'>Engineering E. coli to Reduce Methane Emissions in Cattle</a> <br>The excessive production of methane by cattle is harmful to both the environment and the cattle industry. The reduction of nitrate to nitrite by the rumen microbiota has been shown to compete with the methanogenesis process for hydrogen. Nitrate is an effective feed additive, but in large quantities it causes nitrate poisoning. To combat this we have engineered E. coli to express a nitrite reductase protein. When introduced into the cows' gut microbiome, it will make the cows resistant to nitrate poisoning. Seaweed has also been found to effectively reduce methane emissions when used as a cattle feed supplement. Bromoform was found to be the compound in seaweed that inhibits methanogenesis. We studied the possibility of producing bromoform directly in the cows' gut by engineering E. coli to produce a bromoperoxidase enzyme. In further efforts we hope to replace recurring feed additive purchases with a one-time inoculation of food-grade bacteria.</p></div>
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<div class='column half_size'> <h2>UNIFI</h2> <ul> <li><b> Region:  </b>Europe - Italy</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Open Track</li><li><b> Poster: </b> Zone 3-176 </li> <li><b> Presentation: </b>Saturday - Ballroom B - 2:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:UNIFI'>The sound of coli</a> <br>Since '90 biotechnologies have been highly debated at political and social level, strongly influencing public perception and mass media. Our aim is to investigate the relationship between public perception and biotechnologies and managing to speak to the broadest audience we chose the universal language of music, an innovative science art. We make use of bacterial oscillator related to quorum sensing molecules. In particular the idea is to create three E. coli strains, expressing three fluorescent proteins under an oscillating gene regulation circuit controlled by three molecular inducers. The patterns of the emitted fluorescence by the co-culture will be used as input signal for a colour-to-sound translation software. The end will be a 'son et lumière' show, which will serve as demonstration of the complexity and beauty of the fascinating biomolecular world. We want to demonstrate that such hidden beauty can be disclosed only by the use of biotechnological tools.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>UNOTT</h2> <ul> <li><b> Region:  </b>Europe - United Kingdom</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>New Application</li><li><b> Poster: </b> Zone 2-92 </li> <li><b> Presentation: </b>Saturday - Room 311 - 4:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:UNOTT'>Key. coli: next generation security - protect your gems with germs!</a> <br>Numerous critical issues have begun to emerge affecting digital password security. Companies are increasingly turning to physical strategies, involving biometric and digital keys, to secure client accounts. Synthetic biology offers significant unprecedented security opportunities through synthetically generated biometrics. Consequently, we have developed a randomly assorting, fluorescent bacterial key. Separate genes encoding three distinct fluorescent proteins are expressed using different promoters that are capable of inhibition by dCas9. Null and functional sgRNA DNA modules were endowed with identical sticky ends to compete with one another during ligation, generating an ON/OFF fluorescent state and variance for distinguishable keys. Each combination is modelled from lab data, illustrating discernibility. We have designed a safe, portable device for storage of E. coli, paired to a streamlined authentication procedure tailored to be immune to current hacking frameworks. This system is scalable to include any type of protein, synonymously expanding the number of combinations and improving security.</p></div>
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<div class='column half_size'> <h2>uOttawa</h2> <ul> <li><b> Region:  </b>North America - Canada</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 4-222 </li> <li><b> Presentation: </b>Friday - Room 312 - 4:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:uOttawa'>Exploring gRNA-modulated genetic networks</a> <br>Despite the fundamental role transcription factors play, they place many constraints on experimental designs due to limited types available. Synthetic guide RNA can be modulated to match existing promoters, allowing for targeted regulation without the need for DNA manipulation. Inspired by Gander's study, 'Digital logic circuits in yeast with CRISPR-dCas9 NOR gates', we have decided to build a NOR gate, whose output is controlled via inducible production of gRNA-complexed dCas9. First, we will create four different strains of yeast, each representing a stationary state. The system has two different gRNA; the expression of either results in the inhibition or transcription of yeGFP. Finally, we will create another strain containing a NOR gate, whose different output states can be modified by controlling the production of both gRNAs using different inducible promoters. Thus, our project verifies regulated recruitment using synthetic guide RNA as a viable alternative to conventional transcriptional regulatory modules.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>UPMC PARIS</h2> <ul> <li><b> Region:  </b>Europe - France</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Manufacturing</li><li><b> Poster: </b> Zone 5-272 </li> <li><b> Presentation: </b>Friday - Ballroom A - 2:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:UPMC PARIS'>The BioMaker Factory, Synthetic biology for access to health care</a> <br>Realizing that the lack of access to health care is a major problem in developing countries, we decided to create an automated user-friendly mobile factory able to produce therapeutic molecules for multiple diseases. A heterologous recombinant protein expression system will make E. coli bacteria produce antigen-binding (Fab) fragments of antibodies under an optogenetic regulation thus the production. Our smart box will automatically manage the expression of active biological substances as well as their purification thanks to a computer that will control every step through a software specially designed for our box. <br> 'The BioMaker Factory' will be available to humanitarian organizations and local facilities to tackle the lack of access to health care in areas in need. <br> Thanks to the BioBricks system and the work currently done by researchers and industries to develop bioproduction, we are now confident that 'The BioMaker Factory' will offer a wide range of applications.</p></div>
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<div class='column half_size'> <h2>Uppsala</h2> <ul> <li><b> Region:  </b>Europe - Sweden</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Manufacturing</li><li><b> Poster: </b> Zone 4-242 </li> <li><b> Presentation: </b>Saturday - Room 311 - 12:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Uppsala'>Crafting Crocin</a> <br>Crocin is part of a beta-carotene pathway that leads to synthesis of saffron, which gives the compound it's beautiful crimson colour. In recent years Crocin has caught the attention of researchers worldwide as a potential treatment for various degenerative diseases such as cancer and Alzheimer's. Besides treating diseases we also see potential of Crocin being used as a dye in different industries. The Zeaxanthin pathway is in the registry as well the beta-carotene pathway, but due to that the Zeaxanthin plasmid is quite large and unstable we decided to use lambda red recombineering to transfer it from the plasmid to the chromosome to make it more stable. When producing a compound synthetically and potentially cheaper than the actual plant, it is important to take the ethical aspects into account. That's why ethics has been a huge part of our project and with our Ethics manual hope to inspire more teams.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>UrbanTundra Edmonton</h2> <ul> <li><b> Region:  </b>North America - Canada</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 3-192 </li> <li><b> Presentation: </b>Sunday - Room 304 - 2:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:UrbanTundra Edmonton'>Cleaning an Interplanetary Toxin: Converting Perchlorate into a Breathable Alternative</a> <br>Perchlorate is a natural toxin that exists on Mars at high concentrations of ~0.5-1% and on Earth at significant concentrations of ~0.15-0.25%. However, perchlorate is also a by-product contaminant of several industrial processes. Certain soil bacteria degrade perchlorate to oxygen and chloride using the enzymes perchlorate reductase and chlorite dismutase. By exploiting this two-step enzyme pathway, our team hopes to bioremediate Martian soil for future human settlement and potential applications on Earth. Last year, our high school team UrbanTundra 2016 successfully expressed chlorite dismutase in E. coli, and showed that it could convert the chlorite intermediate to chloride and oxygen. This year, our plans are two-fold: 1) to complete the pathway by expressing perchlorate reductase, a challenging problem involving a large two-subunit membrane protein requiring multiple cofactors, and 2) the design of a self-contained bioreactor for the enzyme pathway that can be used on both planets.</p></div>
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<div class='column half_size'> <h2>US AFRL CarrollHS</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 2-161 </li> <li><b> Presentation: </b>Saturday - Room 311 - 9:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:US AFRL CarrollHS'>Engineered Microbes to Sense and Respond to ETEC</a> <br>Every year, Enterotoxigenic Escherichia coli (ETEC), the most common form of traveler's diarrhea, affects thousands of deployed warfighters. The goal is to engineer non-pathogenic E. coli to sense ETEC, respond to its presence, and package it in a cellulose matrix to enable environmental detection of ETEC. We created two plasmids: 'sense-respond'; and 'packaging'. The sense-respond plasmid sensed Auto-Inducer 2 (AI-2), a quorum sensing molecule created by most ETEC strains, by expressing LsrR which switches on the Lsr promoter. Activation of the Lsr promoter expresses Super-Folder Green Fluorescent Protein (sfGFP), indicating the presence of ETEC. The packaging plasmid expresses a fusion protein consisting of curli fibers and cellulose binding domains. These modified surface proteins permit the bacteria to bind to cellulose, encapsulating the sense-response module. We envision this genetically engineered machine to be deployed in both the internal and external environment to detect ETEC.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>USMA-West Point</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Diagnostics</li><li><b> Poster: </b> Zone 1-40 </li> <li><b> Presentation: </b>Sunday - Room 306 - 1:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:USMA-West Point'>Detecting chemicals with engineered olfactory receptors through microelectrode array readings</a> <br>Current state-of-the-art inorganic hardware sensors for biological and chemical agent detection are highly tailored for specific chemicals and find difficulty when used to detect compounds outside of a highly defined analyte set. Olfactory receptors are G Protein Coupled Receptors (GPCRs) that discriminate thousands of odorants based on genetic sequences that in the presence of a ligand cause cells to generate an electric potential that is measurable using microelectrode arrays (MEAs). Here, we modify HT-22 cells by adding individual olfactory receptors plasmids via nucleofection. A bioreactor was designed with a peristaltic pump system allowing for media to flow across a MEA cultured with neurons which enables the controlled addition of liquid samples for action potential measurement. Analysis of modified neurons serve as a representative model for exploiting the sensitivity and selectivity of native olfactory systems to be used as rapid detection systems for applications in security and medical & health capacities.</p></div>
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<div class='column half_size'> <h2>USNA Annapolis</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 3-194 </li> <li><b> Presentation: </b>Friday - Room 311 - 2:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:USNA Annapolis'>Editing the Human Microbiome: Preventing Aerosolized Peptide Proteins</a> <br>Intercellular communication in biofilm microbial communities is a well-known natural phenomenon. Recently, it has been reported that cells in biofilms may also communicate long distances via ion gradients, mimicking neuronal networks. We believe such electrical communication could be important in pathogenicity of air-borne environmental toxicants if they interfere with natural ion fluxes in the human respiratory microbiome. If a microorganism were engineered to respond to an ionic change, the respiratory microbiome could detect and respond to an environmental toxicant exposure in real-time. Our project will demonstrate a cation responsive genetic sensor by regulating expression of GFP using the sodium responsive transcriptional regulator, NhaR. We will use the ionophore monensin, known to create a change in Na+ equilibrium across the cell membrane, as a proxy to imitate an ionic response within a biofilm. This will ultimately provide bioengineers a method to create alternate probiotic sensors for cell-communication and possibly ion homeostasis.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>USP-Brazil</h2> <ul> <li><b> Region:  </b>Latin America - Brazil</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>New Application</li><li><b> Poster: </b> Zone 2-156 </li> <li><b> Presentation: </b>Friday - Room 306 - 4:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:USP-Brazil'>BioTrojan: Combining paratransgenesis and Synthetic Biology approaches to combat mosquito-borne diseases</a> <br>Paratransgenesis can be defined as a set of strategies to eliminate a pathogen from vector populations through the usage of genetically modified symbionts, thus controlling vector-borne diseases. For our iGEM Project, we have focused on generating a versatile molecular toolkit for endogenous detection and elimination of mosquito-borne pathogens. We have selected Pantoea agglomerans, a ubiquitous bacterium which is enriched in the midgut microbiota of anophelines, as a novel chassis for targeting malarial parasites. Two coupled genetic circuits have been designed (i) for sensing malarial infection biomarkers in the blood ingested by mosquitoes and (ii) for subsequent production/secretion of anti-Plasmodium synthetic peptides. A third module, consisting in an endogenous bacterial killer-switch was designed to control the population dynamics of the genetically engineered symbiont. This is the first study combining the conceptual frameworks of both paratransgenesis and Synthetic Biology, bearing great potential for the generation of novel approaches for combating mosquito-borne diseases.</p></div>
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<div class='column half_size'> <h2>UST Beijing</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Food & Nutrition</li><li><b> Poster: </b> Zone 1-31 </li> <li><b> Presentation: </b>Friday - Room 311 - 9:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:UST Beijing'>Cyclase of Nature & Pangu Algorithm</a> <br>Out of 500 some existing amino acids nature only picks 20 as major building blocks to make proteins. To analyze these 20 molecules, a Matlab computer algorithm is scripted to measure physical-chemical distance among them, which is then summed up to score homologous proteins. We called the program Pangu, a Chinese legendary figure, to reflect the shared-common ancestor of life on earth. We hope programs like Pangu would supplement standard methods of analyzing phylogenetic relationships between proteins and species. Guided by Pangu algorithm, we will synthesize an artificial squalene cyclase in cultured human cells to study basic physiology of cholesterol and related analogs. We hope the result will help to develop new methods to identify micro-nutrients importance for human health. Last but not least, we will continue our 2016 iGEM program iGUT, an E.coli-expressed beta-glucosidase for notoginseng processing to improve bio-availability.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>USTC</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>New Application</li><li><b> Poster: </b> Zone 5-254 </li> <li><b> Presentation: </b>Saturday - Room 312 - 11:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:USTC'>PELICAN</a> <br>Bio-manufacturing is a type of manufacturing that utilizes biological systems to produce commercially important biomaterials. However, it can't be scaled up and put into practice so easily mainly due to the unstable productivity. So, to make bio-manufacturing a more practical technology for synthesis, we build up a more stable and efficient synthesis platform based on bio-cathode. There are 3 systems in our project. To enable E.coli to transfer the extracellular electrons into the cytoplasm as NADH, we construct the Mtr CAB system, the first system we have. Mtr CAB, a protein complex located on the outer membrane, can transfer electrons from the outside of the membrane into the periplasm. The second system is a photoelectric system, generating high energy electrons with CdS nanoparticles as a light harvester. Lastly, we introduce an enzyme as an indicator to demonstrate our project's flexibility and efficiency.</p></div>
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<div class='column half_size'> <h2>USTC-Software</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Software</li><li><b> Poster: </b> Zone 3-178 </li> <li><b> Presentation: </b>Sunday - Room 309 - 4:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:USTC-Software'>Biohub 2.0</a> <br>Biohub 2.0 is a synthetic biological platform devoting for more efficient ideas sharing and colliding. With a more friendly and more convenient web-based interface, users can browse the parts interested them and rate the parts impressed them easily. If inspiration or questions popped out during studying, one can leave a comment under the specific part and communicate with other users. Experiment experience can also be published for later referencing. More than a community, the platform is also a well-designed plugin system, allowing splendid field-related algorithms to be integrated into it. Currently it carries BioBrick Manager, Biobless and ABACUS as default plugins, but users can develop and upload their own ones freely with the help of Biohub's documentation.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>UT-Knoxville</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Manufacturing</li><li><b> Poster: </b> Zone 2-117 </li> <li><b> Presentation: </b>Friday - Ballroom A - 2:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:UT-Knoxville'>Expanding Our Aromatic Waste Degradation Platform</a> <br>Crude oil processing produces toxic byproducts, such as benzene, toluene, and xylenes (BTX) capable of contaminating groundwater and soil leading to potentially serious health risks for both humans and wildlife. Thus, the effective removal of these hazardous organic compounds is imperative towards protecting natural resources. While it is possible to manually clean contaminated sites, such efforts are costly and time consuming. Our project seeks to degrade the toluene-based contaminants into valuable aromatic aldehydes by expressing the xyl ortho pathway from Pseudomonas putida in E. coli. As a continuation of our 2016 project, the 2018 UT-Knoxville iGEM team aims to use synthetic biology and metabolic engineering techniques to further develop our bioremediation strain. First, regulatory elements sensitive to the presence of aromatic hydrocarbons are engineered to fine-tune protein production. Second, overexpression of broadly specific efflux pumps intend to increase organic solvent tolerance and alleviate toxic effects. And third, exploring enzymatic homologs can expand our product library. Our project aims to increase production titers and develop a more robust microorganism suitable for manufacturing and bioremediation needs.</p></div>
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<div class='column half_size'> <h2>Utrecht</h2> <ul> <li><b> Region:  </b>Europe - Netherlands</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Diagnostics</li><li><b> Poster: </b> Zone 4-218 </li> <li><b> Presentation: </b>Friday - Room 310 - 2:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Utrecht'>OUTCASST: Out-of-cell CRISPR Activated Sequence-specific Signal Transducer</a> <br>We aim to create a DNA detection kit for diagnosis of diseases caused by microorganisms, such as Chagas disease. Current test-kits for Chagas disease lack in specificity or sensitivity and require trained personnel and a well-equipped laboratory, which are often not available in rural areas. Our system, called OUTCASST, detects pathogen DNA, allowing for direct diagnosis in a simple, robust and inexpensive manner that can be used in absence of laboratory equipment. It works through DNA binding and colocalization of catalytically inactive Cas9 and Cpf1 fused to membrane proteins and exposed to the extracellular medium. To assemble OUTCASST, we generated inactive Cas9 and Cpf1 variants and checked for functionality. In parallel, several modelling techniques were employed to identify venues for optimization. OUTCASST can be adapted easily to detect any desired DNA sequence and is therefore a valuable addition to the pool of toolkits for disease diagnosis.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Valencia UPV</h2> <ul> <li><b> Region:  </b>Europe - Spain</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Food & Nutrition</li><li><b> Poster: </b> Zone 2-99 </li> <li><b> Presentation: </b>Saturday - Room 312 - 9:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Valencia UPV'>ChatterPlant</a> <br>Urban overpopulation, climate change and natural resources decrement are threatening food security. Ensuring season-less, accessible and local food production promotes a sustainable agriculture. Valencia_UPV provides a whole new system to control plant physiology at both genetic and environmental level. ChatterPlant is a SynBio-based solution that works as plant-human interface allowing a bidirectional communication. First, a root-specific modular optogenetic circuit enables control on plants´ endogenous gene expression (e.g flowering). Then, a sensor circuit with color coded output provides specific information of stress conditions, accelerating corrective measures. The genetic setup is complemented with a hardware device, ChatterBox, specially designed to control plant's growth conditions. ChatterPlant's possibilities can be improved gathering Plant SynBio knowledge. PlantLabCo is an open-access online platform which aims to unify Plant SynBio researchers' work. Individual results can be published, supported by a modeling software tool integrated to ease the mathematical models' generation of genetic circuits.</p></div>
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<div class='column half_size'> <h2>Vilnius-Lithuania</h2> <ul> <li><b> Region:  </b>Europe - Lithuania</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 5-264 </li> <li><b> Presentation: </b>Saturday - Ballroom A - 10:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Vilnius-Lithuania'>SynORI a framework for multi-plasmid systems</a> <br>Gene copy number serves as a fundamental parameter in the dynamics of synthetic gene circuits, but is often not explicitly considered. Coupled with transcriptional and translational regulation, copy number control would offer an effective coordination and increased dynamic range of multiple gene expression. Therefore, we modified the ColE1 replicon to develop a synthetic origin of replication - SynORI - which enables the alteration of plasmid copy number. SynORI framework also incorporates a multi-plasmid regulation system based on uniquely barcoded regulatory RNA molecules, allowing to co-maintain different-group plasmids at preselected copy numbers in a standardized manner. In case certain plasmids are chosen to have a low copy number, an active partitioning system will minimize the risk of plasmid loss and increase the stability of our system. SynORI enables the creation of more complex metabolic pathways, smart assembly of protein complexes and a more precise information processing in synthetic biology.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Virginia</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 1-43 </li> <li><b> Presentation: </b>Friday - Room 302 - 10:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Virginia'>Sewage, PD</a> <br>Current wastewater treatment methods are complex and often difficult to maintain. During the biological nutrient removal process, sludge composed of co-cultures of nitrifying and denitrifying bacteria converts ammonia and nitrites into inert nitrogen gas. Proper treatment of wastewater is important because the release of ammonia and nitrites poses health risks to humans. These toxic chemicals also fuel detrimental water eutrophication. Unfortunately, reaching optimal efficiency of the predominant nitrifier, Nitrosomonas europaea, requires aeration, which is costly for treatment facilities. Here we present a biological device that reduces aeration requirements and eliminates the need for co-cultures. We use a denitrifying bacterium Paracoccus denitrificans as a chassis for a device that contains a nitrification circuit taken from the genome of N. europaea. The addition of amoCAB, haoA, and the associated cytochrome genes creates a complete nitrogen removal system. Upon implementation, our device reduces the operating costs of wastewater treatment plants.</p></div>
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<div class='column half_size'> <h2>Wageningen UR</h2> <ul> <li><b> Region:  </b>Europe - Netherlands</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Diagnostics</li><li><b> Poster: </b> Zone 3-196 </li> <li><b> Presentation: </b>Sunday - Room 302 - 10:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Wageningen UR'>Mantis: Modular antigen-based test for infectious diseases</a> <br>Over the last two decades epidemics of infectious diseases have caused major harm to the world population. These outbreaks often originate from developing countries, where diagnosis can be problematic. The Mantis project aims to detect antigens in blood samples of patients using an in vivo bacterial system, allowing for efficient diagnosis even in rural areas. Mantis is fast, robust, modular, and requires little equipment. Moreover, the whole-cell system allows for more affordable production and longer storage compared to current systems. Detection is based on affinity bodies, an antibody mimetic that can be produced by bacteria. Through rational design, the system can be adapted to detect a wide range of pathogens. The addition of the affinity body to a bacterial receptor will rapidly generate a clear fluorescent signal, measured by our portable, 3D-printed diagnostic device directly in the field. This way, Mantis will help diseases come to light.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Warwick</h2> <ul> <li><b> Region:  </b>Europe - United Kingdom</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 2-111 </li> <li><b> Presentation: </b>Saturday - Ballroom A - 9:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Warwick'>Application of optogenetic control mechanisms for manipulating biopolymer synthesis in advancing 3D printing technologies</a> <br>By providing a well-defined, biocompatible surface coating, the risk of bone and dental implant failure will be greatly reduced. We aim to accomplish this by controlling the spatial production of extra-cellular cellulose with light. Our modified E.coli builds on previous teams work, utilising a transmembrane protein complex, which upon exposure to red light, phosphorylates a promoter and initiates the synthesis cascade. Using this technology, our team will be able to build a 3D printer where living bacteria act as the bioink. Our team will then be able to produce cellulose structures, featuring micrometer pores, which mimic the surface of broken bone, for implants. This structure has been shown to promote osseointegration, helping to reduce overall failure rates.</p></div>
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<div class='column half_size'> <h2>Washington</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>New Application</li><li><b> Poster: </b> Zone 3-201 </li> <li><b> Presentation: </b>Saturday - Room 306 - 1:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Washington'>Viva Violacein - An Affordable Real-Time Metabolics Tracker</a> <br>Advances in synthetic biology have lead to new, useful metabolic pathways that can be used to produce metabolites on a commercially-viable scale. However, management of these cultures is time-consuming and labor-intensive, and measuring levels of metabolites often involves prohibitively expensive analytics, such as HPLC. Our project aims to overcome these problems by providing a low-cost, automated turbidostat bioreactor that analyzes a yeast culture in real time and corrects inputs to maintain culture conditions. To test our system, we use the violacein metabolic pathway, regulated with inducible promoters, to yield four visually distinct pigments. An open-source Raspberry Pi computer collects color and opacity information about the culture, and software analyzes the color and gradually introduces the inducers to keep the culture's production stable. By combining biological, software, and hardware systems, our design can generate previously-unavailable visual data in certain biosynthesis processes, and has a wide range of applications in industrial fermentation.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>WashU StLouis</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 3-202 </li> <li><b> Presentation: </b>Saturday - Room 302 - 2:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:WashU StLouis'>Operation: Ultraviolet</a> <br>Due to numerous climate effects, photosynthetic organisms are being damaged due to increased levels of harmful UV-B radiation. Luckily, many organisms exist that have a natural resistance to this kind of radiation. Using genes from the tardigrade species Ramazzottius Varieornatus, the bacteria species Deinococcus Radiodurans, and a strain of cyanobacteria, we hope to induce resistance to UV-B radiation damage. In order to demonstrate proof of these genes' utility, our first step was to transform the genes into E. Coli. From there, we planned to test these transformed cells in our Environmental Simulation System by irradiating the cells and comparing their growth to that of a control. So far, we have found that E. Coli cells with Dsup are substantially more resistant to UV-B radiation, and we have also recorded preliminary data on uvsE as well. Currently, we are transforming the four genes into cyanobacteria and testing them under UV-B light.</p></div>
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<div class='column half_size'> <h2>Waterloo</h2> <ul> <li><b> Region:  </b>North America - Canada</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 1-20 </li> <li><b> Presentation: </b>Friday - Ballroom B - 2:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Waterloo'>Prions be Lit: Functional Amyloid as a Biological Tool</a> <br>Prions are perhaps most famous for their implication in neurodegenerative diseases. However, there are also proteins that bear strong similarities to prions while not being associated with an infectious disease. These proteins have been deemed 'functional prions.' Here, engineered functional prions in Saccharomyces cerevisiae provide a proof of concept for using prions as a tool in synthetic biology to co-localize different proteins. These engineered proteins have prion-like aggregative behaviour, as well as a fluorescent tag. They will be used to test the viability of using engineered prions to bring and keep proteins in close proximity to each other while maintaining their function.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Westminster UK</h2> <ul> <li><b> Region:  </b>Europe - United Kingdom</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 1-34 </li> <li><b> Presentation: </b>Friday - Room 302 - 4:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Westminster UK'>The detection of quorum-sensing signalling molecules from Pseudonomas Putida via a novel biosensor</a> <br>AHL is a quorum-sensing molecule secreted by bacteria and is essential in biofilm formation. Biofilm is a collection of extracellular proteins and DNA which decreases sensitivity of bacteria to antibiotics. Antibiotic resistance is emerging as a world crisis with the NHS spending roughly £1 billion just on treating nosocomial infections. Multidrug resistant (MDR) gram negative bacteria such as Pseudomonas in particular are emerging as increasingly problematic bacterial species, especially in secondary infections. Therefore, we are aiming to develop strategies to help counter biofilm formation from the molecular level using synthetic biology, with the specific genes ppuR, ppuI and RsaL in Pseudomonas Putida being involved in the formation of the quorum sensing molecule AHL. A Biosensor can be developed to identify and decrease production of AHL, causing decreased biofilm formation and an increased sensitivity of the bacteria to antibiotics. Subsequent applications in pharmacology and well as the development of biocontainment devices.</p></div>
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<div class='column half_size'> <h2>WHU-China</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 2-110 </li> <li><b> Presentation: </b>Friday - Room 309 - 2:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:WHU-China'>Wow(WHU-iGEM operate wastewater)biodegradation of halogenated phenol in wastewater</a> <br>Widely used in agriculture and various industries, synthetic phenolic compounds commonly exist in wastewater and have been troublesome in wastewater treatment due to their remarkable stability and acute toxicity. They can accumulate through food chains and serve as mutagens and carcinogens to people and other organisms. Among them, halogenated phenolic compounds are notablely more toxic and less bio-degradable. Even when the number of halogen atoms increases, the toxicity of the whole molecule is raised as well . To deal with this serious problem, our team aims to construct a Hybrid Membrane Bioreactor to assist the degradation of halogenated phenolic compounds in wastewater. In this device, we intend to apply an engineered Bacillus megaterium which can mainly express an original reductive dehalogenase RdhANP. And we will also make some genetic changes on this B. megaterium to scale up its efficiency in treating the wastewater containing halogenated phenols.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>William and Mary</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Foundational Advance</li><li><b> Poster: </b> Zone 1-9 </li> <li><b> Presentation: </b>Sunday - Room 302 - 2:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:William and Mary'>Modular Control of Gene Expression Speed using Protein Degradation Tags</a> <br>It has become apparent that a fundamental principle of cellular signal processing is the encoding of information within the temporal dynamics of regulatory circuits. For synthetic circuits to achieve the versatility and effectiveness of endogenous circuits, it is necessary to develop simple, effective methods to control a circuit's speed. Current approaches to speed control are too complex for widespread use we lack a modular system that allows one to 'swap out' a sequence to predictably change a gene's speed just as swapping an RBS can change the gene's expression strength. To address this need, we developed a BioBrick suite of degradation tags associated with an E. coli-orthogonal protease, providing the parts and characterization necessary for controlling genetic circuit speed in a simple, modular, and predictable way. Additionally, we created a searchable database of previous iGEM teams' outreach projects, designed to better enable future teams to build upon previous outreach efforts.</p></div>
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<div class='column half_size'> <h2>WLC-Milwaukee</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 2-108 </li> <li><b> Presentation: </b>Sunday - Room 302 - 4:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:WLC-Milwaukee'>Phage Gauge: A novel method of detecting Escherichia coli in contaminated water.</a> <br>Escherichia coli infection is a common problem when water resources such as drinking water, beaches, or irrigation systems are contaminated with human waste. Infections by these bacteria can lead to severe gastrointestinal problems and even death if left untreated. Therefore, it is necessary to have water testing methods that can rapidly and accurately determine whether water sources contain these harmful pathogens. The WLC-iGEM team is working on developing a water testing kit that provides fast and accurate results using components of the Lambda Phage tail that are specific for their target bacteria. These bacteriophage tail components have been cloned and will be purified. By attaching a horseradish peroxidase enzyme (that will produce color when a substrate is added) to these bacteriophage components, E. coli should be able to be detected when present in a water sample. The high specificity and high concentration of bacteriophages should provide accurate and rapid results.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Worldshaper-Nanjing</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 2-93 </li> <li><b> Presentation: </b>Saturday - Room 306 - 9:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Worldshaper-Nanjing'>Self-sinking Algae for CO2 Sequestration</a> <br>Increasing level of carbon dioxide in earth's atmosphere is the main reason of global warming. Thus, it has become important to slow down the accumulation rate or reduce the amount of carbon dioxide in atmosphere. Here, we hope to develop an efficient biological carbon dioxide sequestration system using Synchronous sp. PCC 7002. The capability of CO2 capturing and storage of the algae was improved by inserting foreign genes, encoding rubisco, and starch synthase. The modified strain was also designed to have an expression of a metal binding protein on its pilus to increase weight and deactivate pilus slowly, which would finally cause the alga to sink to the sea bottom permanently so as to cut off the carbon from being reused.</p></div>
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<div class='column half_size'> <h2>Worldshaper-Wuhan</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 1-75 </li> <li><b> Presentation: </b>Friday - Room 304 - 1:30 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Worldshaper-Wuhan'>miR-21 Sponge in Colorectal Cancer for Diagnosis and Treatment</a> <br>Colorectal cancer is one of the most common cancers in the world. The current method for early diagnosis of colorectal cancer remains as a big limitation. The current options for treating colorectal cancer include chemotherapy, which attack all fast-growing cells. MicroRNAs are noncoding single strand small RNA molecules which act as regulators of gene expression and control many cellular processes. Recently, miR-21 is reported to have high sensitivity and specificity in identifying colorectal cancer. Meanwhile, miR-21 can be served as a therapeutic target by targeting many oncogenes in colorectal cancer. That had inspired us of using it as the new biomarker in diagnosing and treatment of colorectal cancer. Our project constructed a mir-21 sponge containing marker gene of GFP and luc for the detection and inhibition of mir-21 in cell lines, which offers a non-invasive and highly sensitive approach for early diagnosis and treatment of colorectal cancer in the future.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>Worldshaper-XSHS</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>High School</li> <li><b> Track: </b>High School</li><li><b> Poster: </b> Zone 3-189 </li> <li><b> Presentation: </b>Saturday - Room 306 - 10:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:Worldshaper-XSHS'>Portable low-cost bio-detector for dissolved oxygen, phosphorus or nitrogen in water</a> <br>Hometown Hangzhou is widely known by water-related UNESCO World Heritages West Lake and Grand Canal, however, severe water pollution problem caused by many reasons also exist. Hence, we hope to provide an easy-operating and low-cost tool for public to monitor water quality around. We designed a portable water quality bio-detector prototype based on E.coli strains which were constructed to detect dissolved oxygen, phosphorus or nitrogen in water respectively. The oxygen sensitive vgb promoter and a GFP reporter constitute Oxygen detector 1.0. To enhance the expression of GFP, version 2.0 contains a vgb promoter, a T7 RNA polymerase gene, a T7 promoter and a GFP gene. For nitrogen, the PyeaR promoter was used to response to different concentrations of nitrate, nitrite and nitric, with a BFP reporter gene. For phosphate, a plasmid consisting of an 'external phosphate sensing promoter' to sense the phosphate concentration and a RFP gene to report.</p></div>
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<div class='column half_size'> <h2>WPI Worcester</h2> <ul> <li><b> Region:  </b>North America - United States</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 1-53 </li> <li><b> Presentation: </b>Saturday - Ballroom B - 10:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:WPI Worcester'>Go(a)t Lead? Bacterial Detection and Bioremediation of Lead Contamination in Drinking Water</a> <br>Lead contamination in drinking water is a major problem across the U.S. Our project aims to improve lead testing and treatment by developing a lead biosensor and colorimetric lead assay, as well as a lead-binding probiotic. Our lead biosensor improves the cost and efficiency of lead testing by producing specific chromoproteins that indicate benchmark levels of lead contamination in a sample. These benchmarks were confirmed by our assay. We are conducting proof-of-principle demonstrations of the biosensor in Escherichia coli, and will ultimately transform it into the Generally Recognized As Safe organism Bacillus subtilis. The probiotic, Lactobacillus rhamnosus, offers an emergency prophylactic solution for treatment by absorbing lead from the gastrointestinal tract after consumption of contaminated water. To achieve this, we are using selective pressure to evolve a probiotic with enhanced lead-binding capacity. Our project will improve the accessibility of lead detection and bioremediation for the general population.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>XJTLU-CHINA</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Therapeutics</li><li><b> Poster: </b> Zone 1-58 </li> <li><b> Presentation: </b>Saturday - Room 306 - 11:00 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:XJTLU-CHINA'>Grenadier Guards using antimicrobial peptides to fight against Staphylococcus aureus</a> <br>Staphylococcus aureus develops resistance to various antibiotics and becomes increasingly difficult to be eliminated due to antibiotic overuse. Patients with intestinal S. aureus colonization tend to suffer from fecal incontinence, diarrhea and so on. Hence, our project aims to make the most of antimicrobial peptides (AMPs), which have a reputation for their efficient antimicrobial activity against bacteria, as new therapeutics. We genetically engineer Lactococcus lactis (Grenadier Guards) to closely detect the presence of S. aureus and throw AMPs (grenades) to eradicate them within a short time after infection. The mechanism includes utilizing the S. aureus's own quorum sensing system as a sensor, or using the cells' osmoregulatory system to control the expression of the AMP genes in tandem repeats, which can produce a relatively high quantity level, subsequently Lactococcus lactis will undergo autolysis controlled by a toggle switch to release AMPs to attack S. aureus, thus relieving the symptoms.</p></div>
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<div class='column half_size'> <h2>XMU-China</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Environment</li><li><b> Poster: </b> Zone 1-17 </li> <li><b> Presentation: </b>Saturday - Room 312 - 4:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:XMU-China'>A chip based device for sensitive and in situ detection of several contaminants in water</a> <br>With the increasing amount of industrial wasted water being discharged into water areas, various kinds of harmful ions have had a great impact on the ecological environment and daily drinking water, but the degree of detection of these ions is limited in some special institutions and instruments, which cannot be portable, real-time and general. Thus, we plan to develop a miniature instrument to achieve these goals. To achieve a trace detection, we designed a genetic system which can amplify electrochemical signals or optical signals. At the same time, we designed a device based on micro-fluid chip to concentrate our engineered bacteria on improving the sensitivity of detection following the principles of modularity, cheapness and easy operation. Last but not least, our system provides an innovative and satisfying platform of detection for other molecules by simply changing corresponding promoters.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>York</h2> <ul> <li><b> Region:  </b>Europe - United Kingdom</li> <li><b> Section: </b>Overgraduate</li> <li><b> Track: </b>Hardware</li><li><b> Poster: </b> Zone 3-182 </li> <li><b> Presentation: </b>Friday - Room 312 - 9:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:York'>QWACC: a Quicker Way to Analyse Co-Cultures</a> <br>Co-culturing of microorganisms is an extremely promising approach, in Biology, for understanding natural and synthetic cell population interactions, and for applications in Industrial Biotechnology including manufacturing and drug research. However, the maintenance of stable and productive co-cultures is technically challenging, expensive, and can be time consuming. We aim to develop a Digital In-line Holographic Microscope (DIHM), along with associated software, that will be able to monitor co-culture counts in a closed loop, in real time, and inexpensively. To complement the microscope, we will also develop a synthetic co-culture. This comprises Chlamydomonas reinhardtii and Escherichia coli, two visually distinct organisms. Chlamydomonas will be engineered to export maltose to feed E. coli, creating a sustainable production platform. We believe that our DIHM and co-culture is a promising start to streamlining the development of co-cultures for industrial applications.</p></div>
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<div class='column half_size'> <h2>ZJU-China</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>New Application</li><li><b> Poster: </b> Zone 5-277 </li> <li><b> Presentation: </b>Saturday - Room 312 - 12:00 pm</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:ZJU-China'>The Guardian Trichoderma</a> <br>Trichoderma is a genus of fungi that has been used as biocontrol agents for many years.Although these species have a considerable inherent ability of antagonizing phytopathogen,like mycoparasitism,bacteriolysis,antibiotic production etc., the practical application is still limited.Our project has tried to solve this problem in a synthetic biological way. Trichoderma.atroviride is our selected guardian,we use it as our chassis, making it can respond to specified volatile organic compounds(VOC) and then synthesize new VOC to realize the communication between guardians just like QS in bacteria.We further build a hardware to detect the healthy condition of plants based on machine learning. We also express ferritin and TRPV1 proteins to try to make the guardians respond to medium waves emitted by the hardware when it estimates the plants are attacked, and then our guardians will protect the plants from phytopathogen,nematodes,or even herbivores.We use tobaccos and its nature enemy Phytopathora nicotianae to elaborate our works.</p></div> <div class='clear'></div>
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<div class='column half_size'> <h2>ZJUT-China</h2> <ul> <li><b> Region:  </b>Asia - China</li> <li><b> Section: </b>Undergraduate</li> <li><b> Track: </b>Manufacturing</li><li><b> Poster: </b> Zone 4-220 </li> <li><b> Presentation: </b>Friday - Room 306 - 11:30 am</li> </ul> <br> <p>
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<a href='https://2018.igem.org/Team:ZJUT-China'>LiGeM: A Light-induced Genetically Engineered Machine for Cell Disruption</a> <br>In fermentation industry, numerous valuable products are intracellular metabolites. Thus, the cell disruption step is essential for product extraction. However, traditional cell disruption methods (including sonication and homogenization) usually need additional equipments and are laborious/time-consuming. To improve the efficiency of cell disruption and intracellular products extraction, a lysozyme-encoding gene was successfully integrated into a modified blue-light-controlled gene switch which was evaluated through eGFP gene expression. Subsequently, self-lysis of E. coli cells was assessed under blue light. To control the expression of lysis gene regulated by blue light, a model of light-emitting device was constructed and a layout of fermentor with light-emitting device was designed. Moreover, we made an economic analysis after consulting several bio-factories. It indicated that our design not only reduce the cost in cell disruption but also simplify operation process. Taken together, our project showed an exciting potential for cell disruption and intracellular products extraction in fermentation industry.</p></div>
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Latest revision as of 01:23, 18 October 2018

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ABSTRACTS

Aachen

Region: Europe - Germany
Section: Overgraduate
Track: Diagnostics
Poster: Zone 5 - #302 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room304 - 4:45 PM - 5:15 PM

Melasense

We plan on developing a melatonin biosensor. Our approach for the biosensor is to genetically modify Saccharomyces cerevisiae by integrating a highly specific human melatonin receptor into the cells. Melatonin has a high membrane permeability which permits us to use the nuclear retinoid z receptor (RZR) which is directly regulating gene expression. We express the RZR as a fusion-protein with the recognition sequence of the human estrogen receptor alpha (ERα). When melatonin is bound, the modified receptor binds to the estrogen receptor responsive element (ERE) and as a consequence regulate expression of firefly luciferase reporter genes. In our second approach, we will use the membrane-receptor MT1 for our biosensor. When melatonin binds to the G protein-coupled receptor, β-arrestins can be recruited. This mechanism allows us to use an enzyme fragment complementation assay based on two fusion-proteins.

Aalto-Helsinki

Region: Europe - Finland
Section: Overgraduate
Track: New Application
Poster: Zone 4 - #229 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room304 - 4:45 PM - 5:15 PM

Silkolor - A sustainable approach to dyeing industry using fusion proteins

Textile dyeing is one of the biggest polluters of natural waters. Many of the synthetic dyes used are non-biodegradable, toxic and large amounts of them end up in waters during the dyeing process. Natural dyes, although less toxic than synthetic ones, require mordants in order to bind to the fabric. Mordants often contain aluminum or other metals, which are harmful to the environment. We are addressing the problem by using two types of colorful fusion proteins. Chromoproteins are fused with binding domains to create colorful proteins which can bind cellulose or keratin based materials, such as cotton or wool, respectively. Spider silk is added to some of the proteins in order to make colored silk proteins that can be made into fibers, which would erase the need for the dyeing step from the textile value chain completely. Our experiments were focused on binding tests and silk fiber production.

ACIBADEM ISTANBUL

Region: Asia - Turkey
Section: Undergraduate
Track: Therapeutics
Poster: Zone 5 - #305 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room310 - 11:30 AM - 12:00 PM

LTNF 2.0: Circularized Venom Neutralizing Factor

The Opossum (Didelphimorphia) is an animal with a very unique characteristic; it displays an outstanding resistance to toxins, snake venoms in particular. This anti-venom ability is gained through a single protein; the Lethal Toxin Neutralizing Factor (LTNF). We are attempting to produce an improved version of this anti-venom, LTNF 2.0 if you will, as a synthetic anti-venom for human use. LTNF 2.0 incorporates the post-translational modification process known as circularization, a process that comprises of adding cysteine amino acids to both ends of a polypeptide chain; triggering the formation of a disulphide bridge, ultimately leading to a circular structure, hence the name circularization. Circularized proteins are known for not only greater stability but also greater efficacy of the protein, thereby improving its shelf life and lowering the required dosage for treatment, ultimately providing a more efficient bioproduct.

AFCM-Egypt

Region: Africa - Egypt
Section: Overgraduate
Track: Therapeutics
Poster: Zone 2 - #153 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room311 - 2:15 PM - 2:45 PM

Microbiota: Opening Doors to New Horizons in Colorectal Cancer Therapy

Colorectal cancer (CRC) is considered one of the most common cancers and accounts for almost half a million deaths annually worldwide. Tremendous progress has been made in understanding the role of the immune system in driving the development of cancers, including CRC. As sensors of cell death and tissue remodeling, Toll like receptors(TLRs) may have a universal role in cancer. There are different TLRs that respond to a variety of Pathogen associated molecular pattern (PAMPs) such as bacterial lipopolysaccharide . The evidence of existence of relevance between bacterial microbiota and carcinogenesis is increasing. it's suggested that microRNAs act as ligands of TLRs playing a role in epigenetic immune modulation. In this study, We will assess the therapeutic efficacy of microbiome based approach as novel therapeutic strategy in restoring normal Toll lie receptor signaling in CRC cell line .

AHUT China

Region: Asia - China
Section: Undergraduate
Track: Environment
Poster: Zone 2 - #99 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room208 - 3:15 PM - 3:45 PM

Carbon dioxide purifier

With greenhouse effect becoming a widespread concern in recent years, how to effectively capture CO2 has become a worldwide problem. At present, CO2 capture mostly includes absorption, adsorption and membrane methods, etc., which have problems with high cost, high energy consumption for regeneration and secondary pollution. CO2 capture using carbonic anhydrase has attracted extensive attention due to its high catalytic efficiency and environmentally friendly properties. First, our project successfully expressed wide type carbonic anhydrase in E. coli, however, its industrial application was limited due to poor stability and easy inactivation. Therefore, based on this, molecular simulation technology was used to investigate effect of amino acid residues mutation on the conformation and activity of enzyme, and the mutant carbonic anhydrase with higher thermal stability was obtained. The experimental results showed that the purified mutant carbonic anhydrase exhibited higher stability and activity than wild type carbonic anhydrase, achieving efficient capture of CO2.

Aix-Marseille

Region: Europe - France
Section: Overgraduate
Track: Therapeutics
Poster: Zone 2 - #128 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room311 - 3:15 PM - 3:45 PM

Breaking bugs

An alternative weaponry must be found to replace the harmful and expensive traditional insecticides, that are now nearly useless against bed bugs. In fact, they developed multiple resistance mechanisms (exoskeleton thickening and enhanced metabolic pathways). The breaking bugs project aims to provide a human-friendly, and efficient solution to eliminate bed bugs. The plan is to elaborate an attractive lethal trap. We will use biosynthesized pheromones as a chemical lure to attract the bugs into the trap and infect them with Beauveria bassiana (an entomopathogenic fungus), causing a fatal epidemic. We produced several types of pheromones in E. coli and are running tests to create the optimal pheromone cocktail. We have worked on producing several enzymes and adding adjuvants to improve the killing efficiency and speed of the fungus. We had nationwide advertising of our project and obtained an indisputable validation from the public for our engagement in fighting bed bugs.

ASIJ Tokyo

Region: Asia - Japan
Section: High School
Track: High School
Poster: Zone 5 - #287 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room309 - 2:15 PM - 2:45 PM

A1AT deLIVERy - Using Stem Cell and CRISPR Technology to Combat Alpha-1 Antitrypsin Deficiency

Alpha-1 Antitrypsin deficiency is a common genetic disorder -- the defective gene for which is carried by 1 in 25 people -- which arises from a single base pair mutation in the SERPINA1 gene, resulting in the production of a form of antitrypsin prone to polymerization. The mutated antitrypsin then builds up in liver cells and is unable to inhibit proteases in the lungs, leading to damage in both. Using CRISPR-Cas9 technology, we aimed to fix the error in SERPINA1 so that proper antitrypsin can be produced. We will show proof of concept in E. Coli cells using osmy secretion tags and GFP as a reporter. We hope to design a liver organ bud using IPS cell technology to deliver function A1AT through collaboration with Dr. Kagimoto of Healios Japan KK.

ASTWS-China

Region: Asia - China
Section: High School
Track: High School
Poster: Zone 2 - #152 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room302 - 11:30 AM - 12:00 PM

Environment-friendly Copper Ion Sense and Treatment System

With the continuous development of industrialization, the negative environmental effects caused by heavy metal pollution are becoming more and more significant. Owing to easy migration and difficult biodegradation, it poses more challenges to the treatment of heavy metals in the environment, especially in soil and water. In this study, we developed an engineered E. coli-based system to sensitively detect the copper concentration in industrial waste using synthetic biological methods. Meanwhile, we are trying to introduce a new gene to effectively capture copper ions in environment. If successful, this constructed biosystem could not only detect copper ions, but also enrich heavy metal pollutants (copper), form copper deposits and then purify the environment, which is portable, low-cost and environment-friendly.

Athens

Region: Europe - Greece
Section: Undergraduate
Track: Diagnostics
Poster: Zone 3 - #178 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room302 - 4:15 PM - 4:45 PM

GENOMERS: Toehold switch enabled viral detection via routine glucose monitoring technology

Middle-East Respiratory Syndrome Coronavirus (MERS-CoV) is a virus with ~35% mortality rate, considered to be one of the most likely to cause major epidemics. We aim to develop a rapid, low-cost test for MERS-CoV for potential use in field diagnosis. Our biosensor is based on the toehold switch mechanism. The designed switches regulate the expression of trehalase, an enzyme which hydrolyzes the disaccharide trehalose to glucose. Thus, overall, the presence of viral load in the sample triggers glucose production, which is measured by a repurposed glucometer, signaling the diagnosis. Finally, attempting to accelerate the diagnosis, we lower the complexity of the switches using an alternative reporter, an engineered split trehalase. The two split fragments assemble to a functional enzyme through coiled-coil interactions. Our proposed diagnostic workflow is easily customizable for the detection of other viruses threatening global health, aiming to contribute to travel medicine and diagnostics.

Auckland MOD

Region: Asia - New Zealand
Section: Undergraduate
Track: Environment
Poster: Zone 5 - #316 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room312 - 12:00 PM - 12:30 PM

Improving the Farmer, Environment and Nitrogen Use Efficiency

Environmental pollution is a pressed global issue, even in clean, green New Zealand. Maintaining clean waterways is our responsibility as kaitiaki of the land (guardians in Te Reo Māori), but agricultural practices such as excess fertiliser application and cow effluent are flooding our New Zealand soils and waterways with urea. Taking a fluxomics approach in Arabidopsis thaliana, we are overexpressing a high-affinity urea transporter (DUR3) to upregulate the uptake of urea, and glutamine synthetase (GS1) to convert the toxic metabolite ammonia into glutamine. As a result, urea is removed more readily from the soil before it’s subject to groundwater leaching or surface run-off. We predict the increase in amino acid production will enhance plant growth. Applying our model to other plants like ryegrasses will allow farmers to grow pasture or forage crops that utilize urea on the paddock more efficiently, requiring less financial investment into urea fertilisers.

Austin LASA

Region: North America - United States
Section: High School
Track: High School
Poster: Zone 5 - #317 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room302 - 2:15 PM - 2:45 PM

Infection Detection: HIV1 Detection in Infants

HIV diagnosis of infants in the developing world continues to pose many problems as current diagnostic methods are inaccurate in infants and difficult to administer in the field. Recent research demonstrates CRISPR-associated enzyme Cas12a's ability to indiscriminately cleave ssDNA following recognition and cleavage of a dsDNA target strand, lending itself to nucleotide detection assays. Due to their high stability in cells, Cas enzymes such as Cas12a are prime candidates for lyophilized bacterial reagents ('cellular reagents') that can be stored at room temperature until resuspended for later use in the field. Our project aims to design an innovative HIV1 diagnostic system for infants that combines cellular reagents with a Cas12a assay. For the purposes of iGEM and biosafety, our team focused on demonstrating the following with purified enzymes and cellular reagents: isothermal amplification of viral DNA and detection of viral DNA by a Cas12a assay.

Austin UTexas

Region: North America - United States
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 1 - #69 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room312 - 12:00 PM - 12:30 PM

A Broad Host Range Plasmid Kit for Engineering Non-Model Bacteria

Synthetic biologists often reach for a handful of well characterized organisms when designing experiments due to their ability to be reliably engineered with standard protocols. However, there are many non-model organisms that perform useful functions, survive extreme environments, or are optimized to produce certain materials which are largely ignored because the methods of engineering them are not well established. The broad host range kit aims to use genetic parts that function in a wide range of bacteria to make this process more efficient. The kit contains a combination of plasmid parts and assembled plasmids with origins of replication known to function in diverse bacteria. Each origin is linked to a fluorescent protein or chromoprotein so successful transformations can be easily identified when plated. Additionally, origins are associated with a specific barcode that can be sequenced to confirm the assembly. Several assemblies containing broad host range origins have been constructed.

Baltimore BioCrew

Region: North America - United States
Section: High School
Track: High School
Poster: Zone 4 - #237 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room304 - 2:45 PM - 3:15 PM

Coagulance Rx

In 2017, Baltimore suffered from 301 homicides due to gun violence. As students who live in Baltimore City, we knew that this issue needed to be addressed. We decided to create a cost-efficient alternative to current fibrinogen-laced bandages on the market. Our method to cause blood clots was by expressing Factor V activator RVV-V gamma in E.coli. We intend to embed this protease into a bandage to treat gunshot or stab victims. We have also worked to enhance the expression of tissue plasminogen activator (tPA), an enzyme that causes coagulated blood to degrade. We want to express an optimized sequence of tPA within E.coli. A purified form of this tPA would be used within an IV therapy for patients suffering from heart disease and other illnesses involving invasive blood clots. We hope to liberate communities within Baltimore by creating more balanced and equitable methods of treatment.

BCU

Region: Asia - China
Section: Undergraduate
Track: Environment
Poster: Zone 2 - #141 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room311 - 5:15 PM - 5:45 PM

Nicotine Degradation

Nicotine, a major alkaloid in tobacco plants, is a significant factor of evaluation for tobacco and cigarettes. Nicotine plays a critical role in smoking addiction and is well known to be harmful to human beings, because it easily crosses the blood-brain barrier and biological membranes. Meanwhile, with large quantities of tobacco products being produced and consumed, tobacco waste is entering the environment. So we want to find a key nicotine-degrading gene to degrade nicotine effectively in E.coli by synthetic biology. Nicotine oxidoreductase (nicA) from Pseudomonas putida S16 has been obtained by our team and a new expression vector has been constructed with promoter(J23119), ribosome binding site(RBS B0034), nicA ,terminator(B0015) in psb1c3. NICA expressed by E.coli top10 could catalyse and degrade Nicotine effectively from 35-50℃ and pH5 to pH8.

BFSUICC-China

Region: Asia - China
Section: High School
Track: High School
Poster: Zone 2 - #95 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room309 - 2:15 PM - 2:45 PM

Biological toolkit for Copper detection

The world's production (supply) and consumption (demand) of copper have increased dramatically in the past 25 years. Massive mining and extensive using of copper results in serious contamination to environment, and then copper contamination threaten the balance of the whole ecosystem. We design a circuit that can better detect the amount of copper ions than before. We improved a previous Part by placing self-cleaving RNA ribozyme RioJ between the promoter of copA and RBS, and replacing reporter of GFP by sf GFP. PcopA is regulated by Cue R protein. We design a new part that is made up of L-arobinose inducing PBAD, RBS and Cue R coding sequence. Furthermore we connect the improved part and the new part together, which is the circuit of our project. It is found that Cue R protein of different concentration affects the response of Pcop A to Copper ions.

BGIC-Global

Region: Asia - China
Section: High School
Track: High School
Poster: Zone 3 - #210 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room312 - 9:00 AM - 9:30 AM

Formaldehunter

In large cities of China, the population growth is accelerating. As a result, an increasing number of buildings are constructed and renovated, and problems of indoor air quality in newly decorated houses become more and more serious. Formaldehyde existing in paint and furniture may cause asthma, or even potentially leukemia. It is commonly acknowledged that formaldehyde volatile is very hard to control as it has long volatilization period. Unfortunately, current methods to remove formaldehyde are mostly either inefficient or expensive. Therefore, our project aims to develop an engineered E.coli to detect and eliminate the indoor formaldehyde safely and efficiently, when the concentration of which exceeds the legal limitation. By emitting florescence, the E.coli indicates the presence of formaldehyde and its effectiveness. Besides, the design of replaceable freeze-dried E.coli ensures the durability of the product. In this way, we would like to provide people with a real 'formaldehunter'.

BGU Israel

Region: Europe - Israel
Section: Overgraduate
Track: Therapeutics
Poster: Zone 4 - #250 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room309 - 9:30 AM - 10:00 AM

OriginALS - Prolong ALS Patients Surival

Amyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disease that leads to a progressive muscle wasting and paralysis due to damage in motor neurons. However, no efficient treatment exists. The BGU-IGEM team aims to develop a system that will ultimately prolong survival of ALS patients by targeting microglia and reactive astrocytes, which are both non-neuronal cells that directly contribute to motor neuronal damage. Our approach is based on: (1) inhibition of toxic pro-inflammatory cytokines secretion in microglia cells and (2) on promoting intrinsic apoptotic signal in reactive astrocytes and preventing their toxic effect on motor neurons. Using modified genome editing technique, we build a system that specifically target toxic astrocytes and prevent the formation of new ones which hopefully will slow down the progression of the disease. As the reactivity of microglia and astrocytes is a common in neurodegenerative diseases, our novel approach could be expanded to other neurodegenerative diseases.

Bielefeld-CeBiTec

Region: Europe - Germany
Section: Overgraduate
Track: Environment
Poster: Zone 2 - #164 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room207 - 5:15 PM - 5:45 PM

nanoFactory: Recycling metal resources - Every particle matters!

Copper, silver and gold - metals are essential for our daily life but resources are dwindling. Industrial mining of metals and electronic waste cause pollution of the environment. Therefore, we established new approaches to recover valuable resources through synthetic biology. By enhancing bacterial abilities to scavenge metal ions from the environment we generated nanoparticles. We optimized Escherichia coli to accumulate metal ions as copper and iron by overexpression of dedicated importers and silencing of exporters while reducing the effects of oxidative stress. To gather nanoparticles from various metal ions we engineered the iron storage protein ferritin. Recycled into nanoparticles the metals could be used for various applications as demonstrated by printing electronics. Considering Dual Use aspects we decided to extract metal ions from pit water instead of dissolving electronics directly. Therefore, in close collaboration with leading experts we developed a customized cross-flow bioreactor for the mining industry.

Bilkent-UNAMBG

Region: Europe - Turkey
Section: Undergraduate
Track: Environment
Poster: Zone 3 - #173 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room309 - 10:00 AM - 10:30 AM

The Last Penicillin Binder

Water pollution originates from many contaminants and antibiotic waste is one of them. Antibiotics which remain in waste water after a treatment may cause bacteria to become multi resistant. In result of this, bacterial infections could spread rapidly and without having an efficient treatment. Current chemical methods of water purification require high cost and energy to be effective. To solve this problem with a cheaper method, our team modified bacteria to bind penicillin remains in waste water. The bacteria produce biofilms which on the surface has penicillin binding peptides attached to csgA proteins. We aim to target beta-lactam rings of the penicillin with these peptides. Our modified bacteria produces an iron-storage protein, bacterioferritin. Then using a magnetic field, we plan to pull away the penicillin-captured-bacteria to which we have added magnetic property with bacterioferritin proteins.

Bio Without Borders

Region: North America - United States
Section: Overgraduate
Track: Diagnostics
Poster: Zone 1 - #62 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room309 - 2:15 PM - 2:45 PM

Blueblood

Horseshoe crab (Limulus polyphemus) blood is the basis for the LAL clotting test for endotoxins in injectable formulations. Harvesting crabs for this purpose has endangered this 350 million-year-old species. The first step in the cascade that characterizes the LAL test is activation of the protease Factor C by contact with endotoxins. We have devised a replacement for the LAL test using cloned Factor C and an artificial substrate consisting of a reporter fused to cellulose binding domain with the Factor C protease site connecting them. The substrate is bound to paper by the cellulose binding domain. When exposed to Factor C mixed with the injectable liquid formulation to be tested, the presence of endotoxins will activate the protease and the substrate will be cleaved, releasing the reporter. Our aim is to develop the most cost-effective and simple device possible so that it can be used by everyone.

BioIQS-Barcelona

Region: Europe - Spain
Section: Overgraduate
Track: Diagnostics
Poster: Zone 2 - #106 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room208 - 9:30 AM - 10:00 AM

IN SITU PERSONALIZED DIAGNOSIS KIT FOR CELIAC DISEASE

In our iGEM Project we will design a personalized gluten sensor through a synthetic biology approach. To do so, we will build a model based on the HLA expression of the patient which will be coupled to a sensor, allowing the detection of reactive epitopes. Our sensor: a) Will be built according to the patient HLA, allowing the detection of specific reactive epitopes independently of the food source. b) Will be able to detect reactive epitopes even in fermented foods. c) The methodology implemented in our sensor could be used for the identification of new reactive epitopes and unknown allelic variants. d) Requires only a DNA sample of the patient. Therefore, the methodology and application of our sensor could be extended for the detection of other HLA related disorders as well as the generation of new research lines for the diagnosis, detection and basic knowledge of these type of disorders.

BioMarvel

Region: Asia - Korea
Section: High School
Track: High School
Poster: Zone 1 - #64 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room309 - 2:45 PM - 3:15 PM

Functional Fusion Protein-Based Biochip for Diagnosis and Monitoring of Heart Failure

The goal of this project is to construct a novel fusion protein of gold binding polypeptides (GBP)-protein G (ProG) to develop an electrochemical biosensor for rapid and simple diagnosis and monitoring heart failure. DH5-alpha E. coli strain was transformed by a genetically modified recombinant vector coding GBP and ProG. The GBP-ProG fusion protein was derived from the strain with IPTG-induced expression and purified using the TALON metal affinity resin. The resulting GBP-ProG was directly self-immobilized onto gold surfaces via the GBP portion, followed by the oriented binding of antibodies onto the ProG domain targeting the Fc region of antibodies. An electrochemical immunochip was fabricated through the GBP-ProG and gold patterned interdigitated array electrode. Antibody immobilization onto the gold surface of the electrode by the GBP-ProG was rapidly and simply achieved with proper antibody orientation. This immunochip shown in this study could be used for diagnosis and monitoring of heart failure.

BIT

Region: Asia - China
Section: Undergraduate
Track: Diagnostics
Poster: Zone 5 - #271 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room309 - 12:00 PM - 12:30 PM

JACOB 2.0:Reborn for Optimization

Last year, our JACOB 1.0 used the competitive reaction between target protein and aptamer-complementary chain complexes to achieve signal conversion for sample markers' early detection. This year, we adopted the idea of JACOB, detect CKMB protein to monitor myocardial infarction. Then, in order to adapt to different needs of detection. We designed two sets of independent fluorescent expression systems that each has advantages. One is to modify the molecule SAM on the complementary chain, and to control engineering bacteria to produce GFP by using SAM-riboswitch. Another method is to combine the Spinach Probe with the complementary strand to form a stem loop structure to capture the Fluorescein (DFHBI) then produce fluorescence. We designed microfluidic chip that can carry the whole biological reaction process. We integrated the peristaltic pump on it also, so the chip and detection equipment are completely separated, which greatly reducing the volume of the overall instrument.

BIT-China

Region: Asia - China
Section: Undergraduate
Track: New Application
Poster: Zone 4 - #235 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room312 - 3:15 PM - 3:45 PM

Who can get an A?

Reactive oxygen species (ROS) is considered as the main reason of human aging through damaging DNA, attacking membrane and inducing apoptosis. Now many antioxidants adding in food, cosmetic and some medical production claim they can clear oxidative damages. Although many methods of measuring antioxidants capability are precise in vitro, there is no standard method for living cell. Therefore our project is to construct a system which can determine the activity of antioxidants in vivo. We chose Saccharomyces. cerevisiae as host and accumulated ROS by overexpressing genes. After reacting with antioxidants, the remaining ROS could reflect the antioxidant activity which could be detected by a redox sensor, roGFP2-Orp1. Additionally, a feedback gene circuit was set to avoid the overproduction of ROS which injured our yeast. Compared with the traditional methods, our system requires a milder environment, damage-free and with higher biologically relevant which make our system more reliable.

BJRS China

Region: Asia - China
Section: High School
Track: High School
Poster: Zone 4 - #249 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room304 - 3:15 PM - 3:45 PM

OxygenMAX

Previous work have shown that the expression of bacterial Vitreoscilla hemoglobin (VHb) can help bacteria utilize oxygen more efficiently. However, the bacterial cell membrane makes efficient hemoglobin-oxygen contact a challenge. Based on this, our team designed a VHb surface display system to express VHb on the outermost shell of the bacteria to raise the hemoglobin-oxygen contacting efficiency. Consequently,this could help bacteria tolerate the low oxygen environment better. We named this system OxygenMAX system. Basically, our OxygenMAX system can be applied to industrial fermentation to raise the high-cell-density growth of the engineering bacteria in bioreactors. Also, allowing for the better growth ability of the OxygenMAX system carried bacteria, our system can help avoid contamination with miscellaneous bacteria in industrial fermentation. Moreover, our OxygenMAX system can be applied to other low-oxygen engineering bacteria working condition like biosensor in intestinal tract, water or soil.

BNDS CHINA

Region: Asia - China
Section: High School
Track: High School
Poster: Zone 2 - #147 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room208 - 4:45 PM - 5:15 PM

A. hydrophila Killer

Aeromonas hydrophila is an ubiquitous gram-negative opportunistic pathogen in aquaculture. Every year, it causes a variety of diseases in fish. The symptoms include ulcers, fin rot, and hemorrhagic septicaemia. When A. hydrophila enters fish body, it often colonise in the gastrointestinal tract first. The pathogen's virulence factors secretion systems are controlled by N-acylhomoserine lactone (AHL)-dependent quorum-sensing system based on the ahyRI locus. Since the pathogen has developed resistance to most common antibiotics, our project targets to develop an A. hydrophila killer by engineering the fish probiotics, Escherichia coli MG1655. The killer expresses lactonase to degrade quorum sensing signals from the pathogen in aim of reducing the production of virulence factors. Also, it expresses antimicrobial peptides (AMPs) to inhibit the growth of A. hydrophila directly. We plan to regulate lactonase and AMPs expression by using Prhl promoter, which is induced by the pathogen's dominant quorum sensing molecule, C4-HSL.

BNU-China

Region: Asia - China
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 3 - #208 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room302 - 5:15 PM - 5:45 PM

Screening Advantageous Mutants - a Self-enrichment System

Bioengineering uses stable, highly productive mutants, target strains, which contain foreign genes. However, screening these mutants costs vast time and workforce, and it is difficult to avoid using antibiotics. We applies synthetic biology methods, constructing a novel pathway to screen mutants by giving target strains growth advantages. Here, utilizing AND gate, the gene of interest expresses to a certain level, making the downstream pchAB gene express and catalyze the generation of salicylic acid(SA). SA can activate the expression of glucose dehydrogenase, which gives the target strains an additional growth advantage. Besides, we integrate the most important control module of the system into the genome using Chemically Inducible Chromosomal Evolution(CIChE). In summary, the target strain will finally obtain the greatest growth advantage in bacterial suspensions and achieve screening internally. This new screening method is simple to operate and provides a new idea for antibiotic-free screening.

BOKU-Vienna

Region: Europe - Austria
Section: Overgraduate
Track: Information Processing
Poster: Zone 4 - #260 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room304 - 10:00 AM - 10:30 AM

ROBOCROP –Turning Genes ON and OFF, in Yeast and Arabidopsis through a dCas9 Toggle Switch

Our goal, communication with eukaryotes, is achieved through the heart piece of our model, the dCas9 Toggle Switch. This will allow switching between two stable states of gene expression. It consists of 2 gene classes which we simply call the ON and OFF genes. One gene in each class, which is considered the primary gene, codes for a gRNA which represses the antagonistic set of genes by binding to dCas9 and further blocking transcription though CRISPR Interference. The switch can be activated either by signal molecules binding to a receptor or directly by liposome bound gRNA that is taken up by the cell. As a proof of concept, the ON gene contains a GFP coding sequence as a reporter gene. Our design is very universal and has many possible applications in the lab and in agriculture, such as controlling flowering time of plants to protect them from late frost.

Bordeaux

Region: Europe - France
Section: Overgraduate
Track: Environment
Poster: Zone 5 - #277 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room302 - 5:15 PM - 5:45 PM

Far Waste in the Landes Forest

This year IGEM Bordeaux Team would like to find an alternative to an entire segment of the traditional petrobased chemistry by a new green biobased chemistry. Indeed, we would like to focus on the biocatalysis of the hydroxymethylfurfural (HMF) in 2,5-furandicarboxylic acid (FDCA). Don't worry, it is not as complicated as it appears. HMF is a by-product of the lignocellulosic biomass treatment. Its toxicity toward microorganisms leads to big issue for many companies which want to use these microorganisms to produce molecules of interest from lignocellulosic biomass. Our project consists in HMF detoxification by using it as a substrate to produce FDCA through bacteria .FDCA was identify as one of most promising biobased molecules which can replace many polymers such as PET (and other petrobased molecules). We suggest a sustainable alternative, eco-friendly and independent from fossil resource.

BostonU

Region: North America - United States
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 2 - #160 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room310 - 9:00 AM - 9:30 AM

Characterizing Inducible Tools for Dynamic Control of Transcription in Budding Yeast

BostonU is characterizing and optimizing two light-inducible promoters, LOV2 and PhiReX, in S. cerevisiae to improve eukaryotic transcriptional control with applications in industrial fermentation. Light-inducible promoters lend greater spatiotemporal control over transcription than small molecule-inducible promoters. Further, LOV2 is activated by blue light and PhiReX by red light, allowing for multiplexed control. We characterize these systems using the eVOLVER, a novel automated cell culturing platform developed by Brandon Wong at Boston University's Khalil Lab. The eVOLVER's specificity and high throughput allows for unprecedented characterization across light pulse programs, temperature, and OD thresholds. We then apply LOV2 and PhiReX to the violacein pathway, demonstrating the induction of four distinctly-colored phenotypes in a single strain, providing a proof-of-concept for the multiplexed control and finely-tuned expression of genes required for effective control of metabolic flux via transcriptional regulation.

BostonU HW

Region: North America - United States
Section: Undergraduate
Track: Open
Poster: Zone 3 - #195 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room312 - 2:15 PM - 2:45 PM

TERRA: An application agnostic device that selectively dispenses the outputs of microfluidic chips

While microfluidics is not new to synthetic biology, they're not widely used by or accessible to many biologists. The current 'lab on a chip' microfluidic chips are highly specialized to each experiment and expensive to manufacture. In order to analyze the results of the experiments on microfluidic chips, many designs incorporate embedded sensors directly on chip. However, labs already have dedicated equipment to analyze experiments, such as plate readers and flow cytometers. Traditional analytical equipment could be used to analyze the outputs of microfluidic chips if the outputs were dispensed selectively into standard vessels, such as a 96-well plate. This would increase the design space for microfluidic experiments, enabling biologists to incorporate microfluidic chips into their workflows without having to fabricate highly specialized chips. To accomplish this we have created TERRA, an application-agnostic system that selectively dispenses the outputs from a microfluidic chip into standard vessels for downstream analysis.

Botchan Lab Tokyo

Region: Asia - Japan
Section: Undergraduate
Track: Food & Nutrition
Poster: Zone 1 - #27 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room207 - 10:00 AM - 10:30 AM

Bacterial Supplement ~Amino Acid Synthesis Model from Nitrogen in Intestinal Bacteria~

Among some kind of nutrients, proteins are very important elements for body formation. However, it is difficult for people in poor areas to continuously obtain protein rich foods. Therefore, in addition to these ingredients, we propose 'Bacterial Supplement' anyone can easily take it into the body. We got this idea from Papuans living in Papua New Guinea. Despite their low-protein diets, they have muscular bodies. It is thought that nitrogen fixing bacteria in their intestines are influencing on protein nutrition. We thought to construct a pathway to synthesize amino acids from nitrogen in E. coli, introducing it in the future. To synthesize amino acids, we first express nitrogenase to convert nitrogen to ammonia. We then express amino acid dehydrogenase to synthesize glutamate and phenylalanine from accumulated ammonia. We hope that our project will contribute to the solution of protein-energy malnutrition by fixing this E. coli in our intestinal flora.

British Columbia

Region: North America - Canada
Section: Undergraduate
Track: Manufacturing
Poster: Zone 2 - #121 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room312 - 12:00 PM - 12:30 PM

Co-Optimize: Distributed Metabolic Pathway of Naringenin and Kaempferol

Distributing metabolic pathways between microbial community members has shown significant potential for the large-scale production of complex, biologically-derived chemical products. Our goal is to address the challenge of regulating population dynamics in a synthetic microbial consortium, by improving the rate of production of naringenin and its pharmaceutically significant derivative, kaempferol, which has anti-cancer properties. This is done by distributing the synthesis of kaempferol between two E. coli strains and optimizing their relative proportions in co-culture. To optimize population dynamics for the production of kaempferol, we regulated the ratio of the two strains using GP2, a transcriptional inhibitor, under the control of a biosensor responsive to the pathway intermediate naringenin. This couples cell growth with the concentration of naringenin, allowing the co-culture to self-optimize based on pathway intermediate abundance. Using our system, we have demonstrated a novel way to optimize microbial polycultures for the synthesis of metabolically complex compounds.

BrockU

Region: North America - Canada
Section: Overgraduate
Track: New Application
Poster: Zone 2 - #89 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room306 - 11:00 AM - 11:30 AM

Lights, Camera, Flip!: Engineering a Light-Activatable Flip Recombinase for in vivo Genetic Manipulation

Flip recombinase is a versatile and important recombinase enzyme with broad applications in molecular genetic applications. Flip recombinase has been used to induce genetic mutations in vivo in numerous model organisms including bacteria, Drosophila, Zebrafish, and mouse and human cells. However, Flip recombinase activity is binary and thus cannot be precisely activated in time and space. Utilizing light sensitive protein interaction domains termed 'magnets', we have developed a light-sensitive optogenetic variant of Flip recombinase that can be controlled in Escherichia coli with exquisite spatio-temporal precision. We believe this Opto-Flip recombinase has the potential to be utilized in multiple model organisms, and will provide a novel tool allowing for precise molecular-genetic control for numerous future research and industrial applications.

BUCT-China

Region: Asia - China
Section: Undergraduate
Track: Environment
Poster: Zone 4 - #253 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room207 - 4:45 PM - 5:15 PM

Research and Construction of Fatty Acids and Glyoxylic Acid Operons

The regulation of expression in the process of life is the essence of life. The construction of gene expression regulation network has become the key to explain the mystery of life. However, due to its complexity and diversity, it is necessary to study its subunit ¬-operator first. . In this experiment, experiments were carried out by experimental ideas such as controlled experiments and deductive methods. Through the design process, operon prediction, operon verification, quantitative analysis, model establishment and other experimental processes, the research and construction of multi-class fatty acids and glyoxylate operons were carried out. Through many experiments, this experiment successfully constructed fatty acid, glyoxylate operon, and found a suitable substrate for fatty acid operons: hydroxy fatty acids. At the same time, quantitative experiments have also made some progress. Based on the qualitative and quantitative experiments, we also established the mode

Bulgaria

Region: Europe - Bulgaria
Section: Undergraduate
Track: Diagnostics
Poster: Zone 5 - #286 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room304 - 11:30 AM - 12:00 PM

The 65 CRISPRoses Story

We aim to create a CRISPR-based DNA diagnostics system that could be used for the detection of the most frequent mutations leading to cystic fibrosis. This genetic condition is considered to be the most common rare disease in Bulgaria. In most cases, the patient is initially misdiagnosed when sweat chloride level is used as an indicator. Our system relies on CRISPR's ability to recognize specific sequences. We plan on using different read-outs, our first idea being site-specific DNA cleavage if a cystic fibrosis associated mutation is present. Another approach would be a pair of dCas9 proteins, linked to split halves of a reporter molecule that restores its activity if the target sequence is identified. Not only could our system be applied in big healthcare facilities, but also in many small town hospitals, since it does not require expensive and sophisticated equipment, for instance DNA sequencing devices.

Calgary

Region: North America - Canada
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 1 - #14 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room208 - 12:00 PM - 12:30 PM

Snip, Equip, Flip: Towards a Safer Gene Therapy

The ideal medicine is not a perfect treatment - it's a cure. Gene therapy, by correcting the genetic basis of disease, may represent humanity's best chance to develop such ultimate health solutions. Despite its unbounded potential, gene therapy is constrained by safety concerns surrounding existing gene transfer technologies. Highlighting a path forward, the 2018 Calgary team has developed a targeted gene integration strategy that leverages CRISPR knock-in, FLP recombinase vector integration and beta-resolvase backbone excision. Extending the integration strategy, the team tested chromatin-modifying elements to reduce variability in therapeutic gene regulation, built a droplet microfluidic device for a scalable gene transfer system, and developed a search tool to help iGEMers find past teams' software. As an extensible platform, the strategy promises greater reproducibility for transgenic research and industrial applications. As a vision for the future, the approach represents a shift away from legacy technologies and towards a safer gene therapy.

Cardiff Wales

Region: Europe - United Kingdom
Section: Undergraduate
Track: Environment
Poster: Zone 2 - #97 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room309 - 9:30 AM - 10:00 AM

RNAphid - an effective RNAi pesticide against Myzus persciae, expressed in Nicotiana benthamiana

Aphids are crop pests globally. They feed on a massive diversity of crops and can cause tremendous economic loss for farmers by reducing crop yields and grain sizes. They damage crops directly by feeding on plant vasculature, draining essential compounds, or indirectly, as hosts of a variety of plant viruses. Current agricultural practice is to use chemical pesticides, which are unfavourable due to off-target effects, harmfulness to humans, and developing resistance of aphids. Consequently, our team has attempted to produce an effective RNAi pesticide against Myzus persicae, the most economically detrimental aphid pest worldwide. In the vasculature of Nicotiana benthamiana, we express siRNAs that affect aphid bacteriocytes, cells that enable the survival of their essential symbiont, Buchnera aphidicola. We target genes BCR3 and SP3 to do this. Finally, we expand the limited PhytoBrick registry, with several plant promoters and reporter genes.

CCA-San Diego

Region: North America - United States
Section: High School
Track: High School
Poster: Zone 2 - #131 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room306 - 5:15 PM - 5:45 PM

HORIZON: Regulated Systems for Crude Oil Degradation, Coupled with Biohydrogen Production

Oil fuels our modern world, but unrefined oil contains carcinogenic compounds known as polycyclic aromatic hydrocarbons (PAHs). PAHs and Petrogenic PAHs can inflict lasting damage to entire ecosystems. Horizon harnesses the natural ability of microorganisms to degrade PAHs to catabolize them into nontoxic substances. Horizon then reuses the catabolic end products which can be metabolized by bacteria to produce clean energy by coupling the degradation pathways with sequences that upregulate hydrogen synthesis within E.Coli. Horizon also uses synthetic pathways to metabolize long n-chained hydrocarbons to fuel such hydrogen synthesis. These engineered E.Coli systems are then implemented in a bioreactor system optimized for bioremediation and capable of modulating between conditions for degradation and synthesis. To regulate the oil degradation and hydrogen synthesis pathways inexpensively, Horizon characterizes riboswitches and novel synthetic CRISPRi operators under riboswitch regulation. Ultimately, Horizon provides a comprehensive system for oil degradation and clean energy fuel production.

CCU Taiwan

Region: Asia - Taiwan
Section: Undergraduate
Track: New Application
Poster: Zone 1 - #45 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room311 - 2:45 PM - 3:15 PM

Liggreen

With the policy of restriction on plastic usage in Taiwan,we aim to produce a lignin-like polymer which can be applied as a lining for paper cups in place of plastic. We were inspired by the water resistant nature of lignin, but natural lignin has many weaknesses. By taking advantage of an oxidizing enzyme produced by engineered Pichia pastoris, we can bind monolignols together into a simpler polymer. This polymer, which we named Liggreen, is water resistant like plastic but decomposable and also heat resistant. Liggreen in paper cups is just one of many applications, so the future of Liggreen is prosperous.

CDHSU-CHINA

Region: Asia - China
Section: High School
Track: High School
Poster: Zone 1 - #78 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room306 - 10:00 AM - 10:30 AM

Use genetically modified lactic acid bacteria to compound miraculin

Nowadays, it is nearly impossible for the patients with diabetes mellitus to enjoy the sweat foods, and our project is designed to solve that problem. So far, there is one thing that could help us reach our purpose-- Synsepalum dulcificum. The key is that the Miraculin in the Synsepalum dulcificum Could turn the taste of sour foods to sweat briefly, allowing patients with diabetes mellitus to enjoy the sweat taste. However, the current technology couldn't make the collection of Miraculin from the Synsepalum dulcificum easy and efficiently. Our goal is to compound the Synsepalum dulcificum protein by using genetically modified technology, and we believe that the new compound method could increase the quantity of the Miraculin and decrease the cost of production, with the intention to help diabetes mellitus patients.

Chalmers-Gothenburg

Region: Europe - Sweden
Section: Overgraduate
Track: Therapeutics
Poster: Zone 1 - #49 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room302 - 11:00 AM - 11:30 AM

DiYEASTive: Probiotic yeast for diagnosis and treatment of colorectal cancer

Our project uses Synthetic Biology to treat colorectal cancer. Our envisioned product is a pill containing genetically engineered probiotic yeast. The pill is ingested by the patient and passes through the digestive tract. If the ingested yeast cells encounter cancer cells in the colon, they will selectively attach to them. As more yeast cells accumulate, the secretion of anti-cancer molecules will be triggered. The yeast cells continuously produce gas vesicles which will refract ultrasound waves. This allows detection and monitoring using simple ultrasound imaging technology in an otherwise invisible and inaccessible part of the body. Meanwhile, the anti-cancer molecules specifically target and kill the cancerous cells, treating the patient with highly limited collateral damage.

CIEI-BJ

Region: Asia - China
Section: High School
Track: High School
Poster: Zone 1 - #42 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room312 - 4:45 PM - 5:15 PM

A yeast system for detection and degradation of aflatoxin B1

Our project is inspired by the possible contamination of the carcinogenic aflatoxins (AFTs), in Pu?er, a Chinese traditional fermented tea. We aim to design a genetically engineered yeast system to detect and degrade its widely occurred species AFT-B1. Our system contains three modules-induction, detection and degradation. The induction module was designed based on an iGEM project in 2017 using two fragments of an antibody against AFT-B1. The detection module utilizes enhanced yellow fluorescent protein to indicate the presence of ATF-B1. In the degradation module, four candidate enzymes were incorporated individually and their activities were assessed. Both detection and degradation modules are triggered when AFT-B1 bridges the two antibody fragments. Our design not only provides a parallel detection and degradation in yeast with potential practical value for Pu?er Tea and other agricultural products, but also establishes a convenient screening system for identifying novel AFT-B1-degrading enzymes.

Claremont

Region: North America - United States
Section: Undergraduate
Track: Environment
Poster: Zone 2 - #93 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room310 - 2:15 PM - 2:45 PM

No title

No abstract

CMUQ

Region: Asia - Qatar
Section: Undergraduate
Track: Diagnostics
Poster: Zone 2 - #96 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room302 - 9:00 AM - 9:30 AM

Cas12a - Recognizing Carriers of recessive traits to save generations

Our approach overcomes the limitations of sequencing, it being a cost-ineffective, labour-intensive, and location-specific method. Utilizing CRISPR for purposes other than gene editing has allowed us to create a novel, field-ready, diagnostic technique for carriers of recessive traits. Cas12a proteins are DNA targeting enzymes that recognize DNA based on a guide RNA sequence designed to match a target. The binding initiates non-specific single-stranded DNA (ssDNA) cleavage activity in Cas12a sufficient to degrade linear and circular ssDNA within minutes. Through this, ssDNA attached to fluorescent dye and quencher, serving as reporters, will undergo degradation. Upon cleavage, the quencher is released and fluorescence is emitted. We designed, built and programmed a hand-held device that can detect the fluorescence with high sensitivity. Simply, DNA obtained from cheek swabs, inserted into the device, diagnoses carriers of Sickle Cell Anemia.

CO Mines

Region: North America - United States
Section: Undergraduate
Track: Environment
Poster: Zone 2 - #108 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room304 - 11:00 AM - 11:30 AM

Molecular Mining of Cadmium: Detecting and Binding Cadmium for Bioremediation

Heavy metal contamination at current and former mining sites is a significant environmental and human health problem. Cadmium (Cd) is one of the more commonly found metal contaminants and due to the highly toxic nature, even minute amounts can cause loss of function of the kidney and liver and loss of bone. We developed a rapid and efficient cadmium sensing and binding system that is capable of detecting cadmium down to 10 μM concentrations. When exposed to a minimum concentration of Cd, the cell expresses the green fluorescent protein (GFP). After Cd is detected, a metallothionein protein binds it and sequesters it in the periplasmic space in the E. coli cell. We will present data characterizing the performance of this system. The engineered system can be used for remediation efforts to remove Cd from the environment and process it safely.

ColegioFDR Peru

Region: Latin America - Peru
Section: High School
Track: High School
Poster: Zone 4 - #244 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room309 - 3:15 PM - 3:45 PM

Fishing for Mercury: Detecting and Removing Hg from Fish Meal.

Contamination of heavy metals is intoxicating the food chain at an alarming rate. We are working with T.A.S.A., exporter of anchovy fish meal to detect, accumulate, and isolate mercury (Hg) from their fish meal product. Our first construct contains a Hg accumulator and Green Fluorescence protein (GFP) to detect and accumulate the Hg. The second construct, with delayed expressed of a Killer Red (KR) protein, will kill the bacteria in response to light. We aim to characterize the delayed expression of the KR protein under three different RBSs using unique constructs. The construct enabling delayed expression of the KR protein will be coupled with GFP/accumulator construct. We are building the GFP/accumulator construct using overlapping PCR. Finally, we are designing and creating a container optimizing the efficiency of detection and removal of Hg from fish meal.

ColumbiaNYC

Region: North America - United States
Section: Undergraduate
Track: Diagnostics
Poster: Zone 4 - #240 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room302 - 9:30 AM - 10:00 AM

Self-Contained Detection of Pathogenic Bacteria Using E. coli Based TX-TL Cell-Free Expression System

Improved characterization of the cas13a protein provides the opportunity to build a cheap, rapid non-technical diagnostic tool that has point-of-care applications in resource-poor settings through the use of an Escherichia coli ­based transcription-translation (TX-TL) cell-free expression system. This self-contained platform encodes all components for diagnosis from detection to a readout in a cell-free solution. By combining the collateral cleavage of CRISPR-cas13a and small molecule sensing via metal sensitive operons, this system becomes modular, allowing for multiple diagnostic targets. To demonstrate, gene fragments of Chlamydia trachomatis and Neisseria gonorrhoeae were detected through the creation of specific targeting guide RNAs. CRISPR-cas13a's collateral cleavage and its preferential cleaving towards certain motifs allowed for the development of a ratiometric read-out due to the preferential degradation of chromoprotein expressing mRNA. The diagnostic system provides a simple in vitro platform that can be used for the versatile detection of pathogenic bacteria in clinical or field settings.

Cornell

Region: North America - United States
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 3 - #188 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room304 - 9:00 AM - 9:30 AM

Oscillate

As the field of synthetic biology grows, it becomes increasingly necessary to have a reliable cell signaling platform that is more resilient to noise than traditional promoter-controlled systems. This year, we developed a robust new paradigm for cellular signaling based on frequency, rather than amplitude-based signals. Our system is analogous to a band-pass filter in electronics; the bacteria respond only to signals of an intermediate frequency, but not those of low or high frequency. By adding tunable degradation tags to proteins in the system, it is possible to frequency at which the reporter was expressed. Versatile deterministic and stochastic models were developed by our team and used to simulate and predict properties of the system. Creating a more robust paradigm for cellular signaling has several implications for the future of synthetic biology, including advancements in biological data storage and computing, chemical production, and biosensing.

CPU CHINA

Region: Asia - China
Section: Undergraduate
Track: New Application
Poster: Zone 1 - #48 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room306 - 4:45 PM - 5:15 PM

A gene therapy strategy to target hepatocellular carcinoma based on conditional RNA interference

Hepatocellular carcinoma (HCC), also called malignant hepatoma, is one of the deadliest cancers. Through the introduction of a double-stranded RNA to the targeted messenger RNA (mRNA), RNA interference (RNAi) leads to the specific cleavage of the mRNA and efficient silencing of gene expression. Since RNAi could be used to silence genes involved in the development and progression of carcinomas, it has promising therapeutic potential for their treatment. The gene therapy strategy we propose here: (1) utilize two cancer-specific promoters (one HCC-specific) to open an AND-gated system to target HCC, the selectivity supposed to be extremely high; (2) is dependent on and hence controllable by a low molecular weight compound; (3) has the flexibility to be adapted to target any mRNA and, if there are disease-specific promoters, other diseases.

CSU CHINA

Region: Asia - China
Section: Undergraduate
Track: Therapeutics
Poster: Zone 1 - #8 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room302 - 11:30 AM - 12:00 PM

Hepasheild: Gene Circuits for Liver Cancer Gene Therapy

The goal of our team is to develop a sensitive system to specifically kill liver cancer cells via genetic circuits, by using the combination of liver cancer-specific promoters and miRNAs. The expression of Gal4-VP16 fusion protein was under the control of liver cancer cells-specific AFP, hTERT or ZEB1-AS1 promoters. The Gal4-VP16 in turn drives the HSV-thymidine kinase (HSV-TK) expression by binding to nine tandem UAS elements in the promoter. Furthermore, the expression of Gal80, a Gal4 inhibitor, is controlled under a CMV promoter as well as a cluster of miRNA93/miRNA-362-5p/miRNA-221 binding sites at the 3'-end. As miRNA93/miRNA-362-5p/miRNA-221 are liver cancer cells-specific miRNAs, the expression of Gal80 is significantly suppressed in the liver cancer cells compared with normal cells. As a result, the nontoxic ganciclovir is converted by HSV-TK to a cell-killing drug in the liver cancer cells, but not normal cells.

CSU Fort Collins

Region: North America - United States
Section: Overgraduate
Track: Therapeutics
Poster: Zone 4 - #239 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room207 - 3:15 PM - 3:45 PM

Staphylococcus aureus Quorum Sensing: A Look Into Ultra-Sensitivity Switches in Gram Positive Bacteria

One of the most pressing matters facing the medical community is the growing dilemma of bacterial resistance to antibiotics. Due to their overuse, we have created bacteria that are resistant to antibiotics, and there are cases of bacteria that are resistant to multiple antibiotics, so called 'superbugs', such as Methicillin Resistant Staphylococcus aureus(MRSA). They pose an enormous risk to human health in the coming decades. We focused on utilizing the quorum sensing system of S. aureus to build a sensitivity switch, dependent on the concentration of the autoinducing peptide (AIP) that it uses to detect it's population density, and become virulent and break away from the biofilm. Our system will hijack the system and trigger production of a phage that will specifically target S. aureus and deliver a kill mechanism. This system will be able to safely treat S. aureus and avoid perpetuating the problem of creating new resistant species.

CU-Boulder

Region: North America - United States
Section: Undergraduate
Track: Therapeutics
Poster: Zone 5 - #284 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room207 - 2:45 PM - 3:15 PM

Antibody Switch

Biologic based therapies have become a promising field in cancer medicine due to their ability to harness the immune system to attack cancer cells. However, a potential side-effect of these therapies is an overactive immune system which can lead to severe reactions and possibly death. A solution to this overactive autoimmune attack would be to engineer and implement a safety switch into the system. This would allow for more aggressive monoclonal antibody therapies to be used while limiting the hazards of potential severe side-effects of current therapies.

CUNY Kingsborough

Region: North America - United States
Section: Overgraduate
Track: Open
Poster: Zone 2 - #137 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room207 - 2:45 PM - 3:15 PM

ow Cost Quantification of DNA Using ImageJ™ and Application

Quantification of nucleic acids is essential for ligation reactions and other reactions that require nucleic acids. Without accurate quantification of nucleic acids, it is difficult to complete a molecular biology experiment. Spectrophotometers are commonly used but are not accessible to all lab groups, making experiments prohibitively difficult for some. The Ethidium Bromide Spot Test protocol is a quick and dirty approach that relies on visualizing dye-DNA complex fluorescence under UV light. However, its reliability is questionable because the protocol is not well characterized. This year, the CUNY Kingsborough iGEM team hopes to better characterize this protocol and standardize the fluorescent measurements using ImageJ™. Ideally, our characterization will allow future iGEM teams to reduce lab costs but still produce trustworthy results. As proof of application, we will use the Ethidium Bromide Spot Test to construct and characterize quorum sensing BioBricks. Additional modelling will be performed to tune the BioBricks’ pattern-forming behaviour.

Dalhousie Halifax NS

Region: North America - Canada
Section: Undergraduate
Track: Environment
Poster: Zone 3 - #179 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room207 - 3:15 PM - 3:45 PM

A Microbial Approach to Detecting Toxic Aluminum

As a result of acid rain, levels of toxic aluminum are rising in Nova Scotia rivers. These aluminum levels correlate with dramatic declines in Atlantic Salmon populations. Measuring aluminum levels is expensive, making it difficult for community groups that protect rivers in Nova Scotia to track aluminum levels. To decrease this cost, we designed a sensitive and inexpensive biosensor to detect levels of toxic aluminum. Our team is making use of the natural product pyoverdine, a fluorescent compound that certain pseudomonads produce to scavenge iron. While the enzymes responsible for pyoverdine synthesis are known, it is not known what steps in the pyoverdine synthesis pathway may be rate-limiting. We are overexpressing pyoverdine enzymes to determine the rate-limiting step. We are developing a fluorescent aluminum biosensor, which could be used as a 'point-of-care' diagnostic for at-risk rivers. This will enable targeting of mitigation strategies and better profiling of aluminum levels.

Delgado-Ivy-Marin

Region: North America - United States
Section: Overgraduate
Track: Therapeutics
Poster: Zone 5 - #299 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room306 - 4:45 PM - 5:15 PM

SynJazz NOLA

No abstract

DLUT China

Region: Asia - China
Section: Undergraduate
Track: Therapeutics
Poster: Zone 1 - #22 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room309 - 9:00 AM - 9:30 AM

A mirobial agent for treating hyperuricemia

Hyperuricemia refers to the symptom that the level of uric acid is unusually high in ,blood. It commonly affects joints and leads to the gouty arthritis which are shown as joint deformity. At present, the drugs for treatment of hyperuricemia show a strong side effect. Urate oxidase is an enzyme in organism that catalyzes the oxidation of uric acid in purine metabolism. It oxidizes uric acid to allantoin. Allantoin can be easily metabolized by the kidneys. To solve the above problems, introduced the gene encoding humanized urate oxidase into E. coli Nissle. After the patient consumes these bacteria, the recombinant strain will remain in the patient's intestine. When the uric acid concentration reaches the threshold, the strain can secrete urate oxidase which can reach the blood of the patient. In addition, we have set up a microbial population control and in vitro lethal system to make our strains safer.

DLUT China B

Region: Asia - China
Section: Undergraduate
Track: New Application
Poster: Zone 2 - #142 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room304 - 11:30 AM - 12:00 PM

Homehold portable urine analyzer for early diagnosis and monitoring of chronic kidney diseases

In order to provide regular screening and early prevention for potential patient populations, it provides home portable visual detection. This project is aimed at chronic kidney disease caused by hypertensive and diabetes.In the early stages of the disease,it can provides medical advice by testing the content of early indicator beta2 microglobulin in the urine. We can get the concentration of the beta2 microglobulin by color change of the liquid crystal film which substance is the orientation change of the liquid crystal molecules caused by the antigen-antibody reaction on the liquid crystal substrate.The aldehyde group at the carbon terminal of the nano-antibody is modified by a screening and co-expression system, and then C18 is attached to enhance its ability to induce liquid crystal molecules, so that the nano-antibody fully satisfies the needs of liquid crystal detection.This project provides prophylactic measures for patients, early recognition and timely treatment.

DNHS SanDiego

Region: North America - United States
Section: High School
Track: High School
Poster: Zone 4 - #216 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room207 - 4:15 PM - 4:45 PM

Survival and Quorum Sensing Activity of Pseudomonas aeruginosa Under Influence of QS Inhibitors vs Antibiotics

Pseudomonas aeruginosa, an opportunistic bacterial species, often infects major burns and cystic fibrosis. Historically, antibiotics can treat these infections; however, P. aeruginosa quickly grow resistance, increasing colonization in human flora and decreasing treatment efficiency. Alternatively to antibiotics, inhibition of quorum sensing (QS), chemical communication among bacterial colonies, is under speculation. This experiment compares the effects of common antibiotics (gentamicin and tobramycin) to QS inhibitors (salicylic acid and zeaxanthin) on Pseudomonas survival and QS activity. Bacteria transformed with a plasmid that detected LasR, a P. aeruginosa QS indicator, levels and correspondingly produced green fluorescence protein (GFP) would be transformed to P. aeruginosa and grown in the presence of each antibiotic and QS inhibitor over 3 days. Absorbance and fluorescence would then be measured through serial dilution. This experiment explores a promising possibility for the future of antibacterial care efficiency and success in saving the lives of cystic fibrosis and burn patients.

DTU-Denmark

Region: Europe - Denmark
Section: Overgraduate
Track: Manufacturing
Poster: Zone 1 - #52 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room207 - 9:00 AM - 9:30 AM

Hyphae Hackers: Fungal building materials for extreme environments

Colonization of uninhabitable areas, like Mars, will require building materials to be transported to the site of deployment. Transport limitations such as space and weight make this process very expensive. Based on these challenges, we propose to make building materials from fungal mycelium to be grown on site. Therefore, our project is focused on how to optimize the material properties of the fungi through engineering of basic fungal characteristics. Our initial studies identified Aspergillus oryzae as the best candidate chassis for material properties and ease of genetic engineering. Based on this, we transformed the melA gene from Rhizobium etli into A. oryzae in an effort to improve the UV radiation tolerance by establishing melanin production. Furthermore, we have designed a final geometric structure that can withstand external conditions and reduce the amount of work needed to assemble it.

Duesseldorf

Region: Europe - Germany
Section: Overgraduate
Track: Foundational Advance
Poster: Zone 4 - #254 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room311 - 9:30 AM - 10:00 AM

Trinity - towards an engineered co-culture toolbox

Co-cultures are found in all conceivable entities, such as the human gut, cheese or plants, but good tools to study those communities are currently not given. Indeed we created a modularly built toolbox using not only three different dependencies but also three different organisms: With Escherichia coli, Saccharomyces cerevisiae and Synechococcus elongatus our team engineered a system based on nutrient exchange. Here phosphate is provided through oxidation of phosphite, nitrogen source produced by melamine breakdown, whilst carbon source is provided by Synechococcus elongatus. Two additional independent approaches are designed, too. The first includes regulation via cross-feeding by amino acid auxotrophies and production: lysine by Escherichia coli and leucine by Saccharomyces cerevisiae. The other utilizes regulated self-lysis via quorum sensing molecules, to control cell density by a phage lysis gene. This engineered toolbox opens a wide range of possibilities to create microbial communities for different purposes, such as synthetic probiotics.

Duke

Region: North America - United States
Section: Undergraduate
Track: Manufacturing
Poster: Zone 3 - #169 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room312 - 11:30 AM - 12:00 PM

Optimized Taxol Biosynthesis in E. Coli

Taxol is a natural molecule found in the bark of the Pacific Yew tree that has been used to treat a variety of cancers. Current manufacturing methods are unable to achieve high yields; the aim of our project is to greatly improve manufacturing outputs and reduce costs through biosynthesis of taxol from an intermediate in the synthesis pathway in E. coli. We used a modular approach to link the five necessary genes together before recombineering the construct into the E. coli genome; our design thus can be easily adapted to produce next generation taxanes. Five T7 bacteriophage promoters of varying strengths were selected from a promoter library and fitted in random combinations to the pathway genes. The resulting variants were screened to determine which combination of promoters maximized taxol synthesis. Finally, we analyzed the activity of produced taxol and evaluated this biosynthesis design's feasibility in industrially relevant conditions.

East Chapel Hill

Region: North America - United States
Section: High School
Track: High School
Poster: Zone 4 - #242 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room312 - 10:00 AM - 10:30 AM

Improving the Efficacy of Riboswitch Based Sensor for Visual Detection of Fluoride in Water

Fluoride, in appropriate quantities, has been recognized as beneficial for protecting tooth enamel from decay. However, a significant problem arises when excess amounts of fluoride infiltrate drinking water. High fluoride concentrations can result in dental fluorosis, which is characterized in children by hypomineralization of the enamel. To address this challenge by efficiently detecting fluoride in water, we aim to develop a fluoride biosensor using previously characterized fluoride riboswitches. Last year, we have developed an operon that, when fluoride binds, activates the riboswitch resulting in transcription of the chloramphenicol acetyltransferase gene. Thus, when fluoride is present, bacterial growth can be observed in the presence of chloramphenicol. However, this system was only able to detect high fluoride concentrations. To improve the efficacy and reduce the detection threshold, we used restriction enzymes to test various promoters and riboswitch sequences. We found that two of the new sequences promoted higher bacterial growth.

Ecuador

Region: Latin America - Ecuador
Section: Undergraduate
Track: Therapeutics
Poster: Zone 1 - #58 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room302 - 11:00 AM - 11:30 AM

Recombinant production of fusion proteins and their coupling to bacterial cellulose for obtaining a biomaterial.

Development of a biomaterial based on the cross-linking of bacterial cellulose and fusion proteins, for use in biomedical applications. Bacterial cellulose is used as a bandage matrix. The fusion proteins have the following parts: CBD, ELP and BMP2. CBDs function is to bind to cellulose, the ELP protein gives greater flexibility to the bandage, while the BMP2 protein, an inducer of cell differentiation in osteoblasts, is responsible for reducing the recovery time of the bones. To achieve the objective, the expression of the cellulose and the fusion proteins is carried out separately. For bacterial cellulose, is used an Escherichia coli expression system, in two plasmids: psb1C3 responsible for cellulose synthesis and psb1A3 responsible for the synthesis of the export system and overproduction. For the fusion protein, is used plasmid psb1C3, which contain the genes for the proteins CBD, ELP and BMP2.

ECUST

Region: Asia - China
Section: Undergraduate
Track: Environment
Poster: Zone 1 - #80 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room312 - 11:00 AM - 11:30 AM

Engineering microbial method to solve the problem of blockage corrosion caused by bacteria

The global cost of blocking and corrosion in cooling towers is estimated to be several billion dollars each year, which mainly results from the colonization of microbes. The microbes cause the formation of corroded objections and biofilm, directly leading to severe blocking. In this year, ECUST iGEM is trying to solve the problem by synthetic biology, presenting a totally new idea. By constructing engineered Escherichia coli, we design an integrated gene circuit which assembles sensing, cleaning rust, eliminating biofilm and killing iron bacteria. The microbes in pipelines will firstly be sensed through quorum sensing, then two key substances will be secreted to clear rust and biofilm respectively. When this method achieves the certain effect, the expression of antimicrobial peptides and autolysins will be triggered to kill the bacteria without adhesion ability, basically preventing the pipelines from being blocked again.

Edinburgh OG

Region: Europe - United Kingdom
Section: Overgraduate
Track: Manufacturing
Poster: Zone 2 - #122 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room306 - 2:45 PM - 3:15 PM

Escherichia Coli with heterologous polyhydroxyalkanoate (PHA) pathway produces bio-based and biodegradable thermoplastics from industrial co-products

Among the pressing issues towards bio-based alternatives to plastic, cost-efficiency and truly sustainable models remain a challenge. As our proposed solution, we are investigating the production of polyhydroxybutyrate-co-valerate (PHBV) by looking not only at using industrial co-products as substrate but also improving downstream processing. PHBV and other polyhydroxyalkanoates (PHA) are thermoplastics that can be designed with bespoke physical properties based on their relative compositions. By introducing heterologous genes (phaCAB) from Cupriavidus necator, we engineered recombinant Escherichia coli to produce PHBV using co-products from local whisky distilleries. Furthermore, we have designed a secretion system to reduce costs associated with current extraction methods. To complement this, we are developing not only in silico metabolic models for optimized polymer synthesis but also macro-scale models to assess the environmental and economic impact of these products in their life cycles.

Edinburgh UG

Region: Europe - United Kingdom
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 2 - #166 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room208 - 9:00 AM - 9:30 AM

Maxed OOT

Release of the living prokaryotic chassis used in synthetic biology outside of laboratory conditions can cause unforeseeable damage to the environment and the ecosystems present there. However, the inability to release synthetic biology inhibits its usefulness, and limits its potential in solving global and localised problems. At team Maxed OOT we believe we have the solution… Maxicells! Maxicells are achromosomal E. coli cells that cannot replicate. Maxicells remain metabolically active following the loss of their chromosome and express genes given to them on an ‘instructor plasmid’. In our project we analyse the most efficient methods for maxicell production, quantify their active metabolic timeframe, and characterise them as a biosensor. Additionally, we present our triple lock system for preventing horizontal gene transfer. The resulting novel chassis could re-contextualise many previous Synthetic Biology projects and open doors for the field as a whole.

Emory

Region: North America - United States
Section: Undergraduate
Track: Food & Nutrition
Poster: Zone 2 - #168 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room312 - 5:15 PM - 5:45 PM

Recombinant bacteria protect fruit flies from malathion

Organophosphate (OP) insecticides, including parathion and malathion, inhibit the enzyme acetylcholinesterase, thereby causing over-accumulation of the neurotransmitter acetylcholine. OPs account for 30% of pesticide sales worldwide. Over 200,000 people, mostly farm workers, die each year from over-exposure. The OP malathion is the most common insecticide contaminant of livestock feed in the U.S. Here we show that Escherichia coli that express artificially evolved enzymes protect a model animal, Drosophila melanogaster, from otherwise toxic doses of malathion. This result is significant because the strategy could be extended to protect pollinating insects, livestock and farm workers from malathion. More generally, these results suggest that enzymes that bioremediate toxinscan be applied without purification as long as they are expressed in environmentally benign hosts.

EPFL

Region: Europe - Switzerland
Section: Overgraduate
Track: Therapeutics
Poster: Zone 1 - #84 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room207 - 4:45 PM - 5:15 PM

Title: CAPOEIRA (CAncer PersOnalised Encapsulin Immunotherapy & Relapse surveillAnce)

While Melanoma remains the deadliest form of skin cancer, immunotherapy approaches can harness our immune system to defeat it! Yet, current immuno-treatments suffer from high costs, limited accessibility, and poor specificity. Our project 'CAPOEIRA', named after the Brazilian self-defense martial-art, exploits the potential of synthetic biology to develop a personalized, cost-effective, and rapid production scheme for cancer vaccine and point-of-care relapse surveillance. First, a bioinformatic pipeline integrating state-of-the-art tools identifies our targets: melanoma neoantigens, the fingerprints of cancer cells. Next, cell-free protein expression rapidly synthesizes a library of encapsulin protein nanocompartments presenting the various neoantigen epitopes. This encapsulin vaccine activates dendritic cells which trigger T-cells' attack on the neoantigen-bearing cancer cells. Nevertheless, we don't underestimate a defeated villain! To detect potential relapse, we combine techniques including dumbbell probes, rolling circle amplification, isothermal amplification, and CRISPR-Cas12a to detect circulating tumor miRNA and DNA. Ultimately, CAPOEIRA trains the immune system to retaliate!

ETH Zurich

Region: Europe - Switzerland
Section: Overgraduate
Track: New Application
Poster: Zone 4 - #221 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room306 - 11:30 AM - 12:00 PM

AROMA - Autonomous Robot for Odorant Measurement in Air

Cell-based biosensors allow to simply and selectively sense diverse chemical signals; yet their applications are limited by the minutes-to-hours timescale of gene transcription and translation. To generate a real-time output, we exploit the much faster changes in protein interaction and bacterial movement. Based on the E. coli Tar chemotaxis receptor, we developed two sensing systems: detecting DNA binding of a transcription factor via split luciferase complementation, and imaging the movement of bacteria at the single-cell level. The sensory domain of Tar can be modified to recognize different molecules, extending the applicability of the sensor. To show the advances brought by our system we built AROMA, an autonomous robot that is directly driven by the onboard biosensor. The robot detects the concentration of volatile compounds in air by imaging the bacterial response with a microscope built in-house. This enables our device to locate the source of pollutants or chemical hazards.

Evry Paris-Saclay

Region: Europe - France
Section: Overgraduate
Track: Foundational Advance
Poster: Zone 1 - #83 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room306 - 2:45 PM - 3:15 PM

PepTalk - Repurposing Bacteriophage Peptide Signals For Expanded Bacterial Communication Vocabulary

Communication is Key' is a universal principle that applies to all levels of organization: from microbial colonies to human social networks. Communication helps single-celled organisms to determine their collective fate by quorum sensing, and individual footballers to coordinate the winning goal for their team (Allez les bleus!). However, if the language used to communicate has limited vocabulary, it's hard to have any meaningful conversation. Synthetic bacterial consortia are currently engineered using a very small set of signalling molecules for cell-to-cell communication, thus limiting the potential of this powerful technology. In our project, PepTalk, we repurpose the small peptide based signalling system of SPbeta group bacteriophages for application in the more widely used laboratory workhorse Escherichia coli by engineering hybrid E. coli promoters in order to demonstrate orthogonal communication channels between cells. The PepTalk system will expand the repertoire of unique bacterial communication signals, enabling more complex conversations in bacterial consortia.

Exeter

Region: Europe - United Kingdom
Section: Undergraduate
Track: Environment
Poster: Zone 1 - #7 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room309 - 5:15 PM - 5:45 PM

Project Perchlorate: Turning a problem on Earth into a solution on Mars

Mars is a location of scientific interest and the next step in space exploration. NASA’s 2008 Phoenix Rover found that Martian regolith contained up to 1% perchlorate salts, which would leach into crops grown in Martian soil and cause health issues like hypothyroidism. Additionally, transporting the necessary oxygen to a Martian base would be expensive and inefficient. Oxygen production would ideally take place in situ. Our project aims to utilise a GM bacterium that bioremediates perchlorate, reducing it to oxygen. Naturally occurring perchlorate reducing bacteria utilise two enzyme complexes; PcrABCD for perchlorate reductase and Cld for chlorite dismutase. We will insert these genes on two plasmids into E. coli. We’ve worked with stakeholders to design a perchlorate reducing bioreactor that could be integrated into existing life support systems, providing breathable oxygen. Existing methods of perchlorate disposal are explosive, something especially dangerous in space, making this a uniquely synbio project.

FAU Erlangen

Region: Europe - Germany
Section: Overgraduate
Track: Foundational Advance
Poster: Zone 4 - #224 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room304 - 2:15 PM - 2:45 PM

Paving the Way for Biocatalytically Active Protein Membranes

The idea of this project is the improvement of biocatalytic properties of enzyme cascades using surface-layer (S-layer) proteins. S-layers are prokaryotic protein membranes which assemble into two-dimensional lattices with different symmetries. As components of a model system, the S-layer proteins SbsB (p1, Geobacillus stearothermophilus), PS2 (p2, Corynebacterium glutamicum) and RsaA (p3, Caulobacter crescentus) were isolated. In solution these S-layer proteins arrange into three-dimensional nanostructures. Cluster formation of S-layer proteins was examined by mixing different symmetries (p1, p2 and p3). Structure formation was predicted with Monte-Carlo Markov chain simulations. To explore novel potential applications, S-layer proteins were conjugated with Streptavidin. Thus, various biotinylated fluorescence markers can be applied for FRET analysis. This can serve as model system for S-layer conjugates with biocatalysts.

FJNU-China

Region: Asia - China
Section: Undergraduate
Track: Environment
Poster: Zone 3 - #185 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room302 - 4:15 PM - 4:45 PM

2-PLEAsant

According to statistics, the microbes we touched each day are about 3 times more than the human cells. The infection with some specific microbes can cause infectious diseases and give unpleasant smell. Bacteria can infect any area of the body and cause different diseases: pneumonia, meningitis, food poisoning, etc. Our project focuses on inhibition of the infectious microbes in a more efficient, environmentally friendly way. Based on the principles of metabolic engineering, we engineered an E.coli strain producing phenyllaclic acid that has broad-spectrum antibacterial effects, and the rose-like aroma compound 2-phenylethanol. We incorporated the common components of temperature and salt control in the synthesis system, which applied phenyllaclic acid and 2-phenylethanol to the natural environments. In addition, we designed the toxic protein mazF as a suicide switch to ensure biosafety. In the future research, we plan to promote the system into various types of fields and solve more environmental problems.

FSU

Region: North America - United States
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 4 - #228 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room302 - 4:45 PM - 5:15 PM

Audiogenetics: Activating Bacteria with Sound

QUESTION: Can sound be used to induce gene expression in E. coli? IMPACT: It is routine to use a small molecule to induce gene expression in cells. Can sound become a routine means to induce gene expression? The Human Practices Team revealed that success in using sound to induce gene expression in cells has the potential to impact the brewing industry and molecular biology research. A potential negative impact could be the activation of pathogenic cells with sound guns. RESULTS: We characterized promoters submitted by the 2008 UC Berkeley team that potentially could be activated by sound. In parallel, we selected additional promoters that also have the potential to be induced by sound. We tested the promoters in new genetic devices to evaluate if different sound frequencies and amplitudes correlated with increased gene expression. The results of the tests are available on the wiki and will be presented.

Fudan

Region: Asia - China
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 1 - #16 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room311 - 9:00 AM - 9:30 AM

ENABLE across-membrane binary computing in mammalian cells

Contact-dependent signaling is critical for multicellular biological events, yet customizing contact-dependent signal transduction between cells remains challenging. Here we have developed the ENABLE toolbox, a complete set of transmembrane binary logic gates. Each gate consists of 3 layers: Receptor, Amplifier, and Combiner. We first optimized synthetic Notch receptors to enable cells to respond to different signals across the membrane reliably. These signals, individually amplified intracellularly by transcription, are further combined for computing. Our engineered zinc finger-based transcription factors perform binary computation and output designed products. In summary, we have combined spatially different signals in mammalian cells, and revealed new potentials for biological oscillators, tissue engineering, cancer treatments, bio-computing, etc. ENABLE is a toolbox for constructing contact-dependent signaling networks in mammals. The 3-layer design principle underlying ENABLE empowers any future development of transmembrane logic circuits, thus contributes a foundational advance to Synthetic Biology.

Fudan-CHINA

Region: Asia - China
Section: Undergraduate
Track: Therapeutics
Poster: Zone 2 - #154 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room310 - 11:00 AM - 11:30 AM

Synthetic Transducer Engineering Platform (STEP)

Cell therapy has shown great potential in cancer treatment these years, while the existing CAR-T cell therapy can only target on cell surface antigens. However, there are also many tumour markers free in the blood, also being important targets marking the location of tumour. Here we manage to construct a brand new transducer system, named STEP, to recognise small, soluble tumour markers (e.g. VEGF, AFP, TSGF). For that purpose, we adapt and optimise a newly developed system to transduce the input (free ligands) into release of a transcription factor and expression of desired drugs. To increase the recognition ability, we use Rosetta to redesign the interface between ligand and receptor in order to enhance the binding affinity. Our STEP system can be applied for detecting tumour markers in blood and secrete drug in real time to appropriate tissues, providing a new yet practical approach for cell therapy and cancer treatment.

Gaston Day School

Region: North America - United States
Section: Undergraduate
Track: Environment
Poster: Zone 2 - #130 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room208 - 11:00 AM - 11:30 AM

Improving E. coli's resistance to isobutanol for large scale production

We use fuel to power everything from our cars to our furnaces; however, our fuel supply is running low. As a result, we are turning to biofuels for renewable energy. We are trying ethanol, but it is inefficient, requires arable land, and pulls corn from the food supply. For this reason, our team is engineering E. coli K-12 to produce isobutanol, a biofuel with an energy density similar to gasoline. We started by improving E. coli's resistance to isobutanol. Though E. coli can produce isobutanol naturally, its toxicity will hinder production at high concentrations. Higher resistance will allow for greater production later. We cloned the genes GlmY, EutG, and AdhP, combined them with a range of promoters, and observed bacterial growth in media containing isobutanol from 0.0217 to 0.650mM. In the future, we plan on cloning AdhE, AceE, AceF, YiaY, and GlmZ: genes associated with alcoholic resistance.

GDSYZX

Region: Asia - China
Section: High School
Track: High School
Poster: Zone 1 - #71 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room309 - 3:15 PM - 3:45 PM

Rocking Yeast

Our goal this year is to create a kind of yeast for controlling heavy metal contamination in water. Heavy metal pollution has the characteristics of being enriched by the biological chain.Traditional treatment methods such as chemical reagent sedimentation mostly bring about great environment pollution and potential safety hazard. We aim at treating this pollution with yeast in an environmentally friendly, economical and effective manner. We found that gene PCS1 extracted from Arabidopsis thaliana can synthesize phytochelatins to chelate heavy metal ion. we use the genetic engineering techniques to take the pcs1 gene from Arabidopsis thaliana and then transfer it into the pPIC9K plasmid. The final step of the process is to transfer this plasmid into the yeast’s cell and activate the gene expression of psc1.

Georgia State

Region: North America - United States
Section: Overgraduate
Track: Diagnostics
Poster: Zone 3 - #183 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room302 - 10:00 AM - 10:30 AM

Is Your Detector Expecting? See with HCG!

Detection is essential in providing an illustration of the chemical world around us. Currently, fluorescent protein are used as reporters but they require additional analysis with expensive and immobile equipment. We propose to create an alternative detection system kit using recombinant Human Chorionic Gonadotropin (HCG) as a reporter. The goal of our project is to create an easy, cost-effective, and sensitive detection device for use in synthetic biology, it can even be used by other iGEM teams to get an all-or-nothing response indicating the presence of targeted protein using pregnancy test strips. We plan to create a pGEX plasmid containing recombinant HCG preceded by new restriction sites which is where the promoter is inserted, only to be activated in the presence of the protein in question. Then when a pregnancy test strip is inserted in the sample, it will trigger the response based on the activation of the introduced promoter.

Gifu

Region: Asia - Japan
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 4 - #217 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room306 - 2:45 PM - 3:15 PM

MPPP (Mass-production of protein in PURE system)

In vivo circular RNA expression can be a cutting edge method to perform mass-production of protein. During the translation of coding information of DNA into amino acids, function of ribosomes is naturally influential. The translation is initiated by binding ribosomes to mRNA and termination of translation is induced by a stop codon. When a start codon is recognized by ribosomes, the protein producing organelles release the protein. To produce large amount of protein and long-chain protein we can utilize circular RNA without the stop codon. iGEM Gifu 2015 performed the method of the Permuted Intron-Exon Method (PIE method). Currently 2.5% of transcribed RNA can be formed as circular RNA. With PIE method, mass-production of protein was confirmed in E.coli, however the protein had no function because of aggregation. This year our team will try to produce functional protein from the circular RNA in PURE system, a kind of cell-free system.

GO Paris-Saclay

Region: Europe - France
Section: Overgraduate
Track: Environment
Poster: Zone 3 - #205 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room311 - 4:15 PM - 4:45 PM

MethotrExit: a HeteroGenious Cleaning Factory

Cytotoxic anticancer drugs are among the harmful chemicals found in hospital wastewater at high concentrations. Degradation through physical and chemical methods exist but are often inefficient, unsustainable or expensive. We propose MethotrExit, a bioreactor-based approach to tackle this problem. We focused on the biotransformation of methotrexate (MTX), a widely used anticancer drug. We designed synthetic cassettes encoding a new biotransformation pathway using a heterologous carboxypeptidase in Escherichia coli. In only five hours, MethotrExit drastically removes MTX from the media. However, anticancer drug degradation products and/or the biotransformation pathway itself might be toxic for E. coli. To overcome this issue, biobricks generating heterogeneity in enzyme expression were built to ensure survival of a subpopulation. Modeling of this system highlights the interest of a division of labor between 'cleaning' and 'stem' bacterial cells.

Goettingen

Region: Europe - Germany
Section: Overgraduate
Track: Environment
Poster: Zone 3 - #198 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room312 - 9:30 AM - 10:00 AM

Glyphosate on my plate?! Detection and inactivation of Glyphosate using the soil bacterium Bacillus subtilis

Feeding the steadily growing world population is a major agricultural task that heavily relies on the utilization of herbicides. Glyphosate is the prominent example for a total-herbicide, as its usage rate is ever increasing since its introduction in 1974, making it the most-used herbicide in the USA today. Glyphosate has a bad reputation as it is thought to be harmful to human health. We want to improve the knowledge of the influence of glyphosate on the physiology of a model organism. For this purpose, we aim to engineer the Gram-positive model bacterium Bacillus subtilis for the detection and degradation of glyphosate. So far, we have isolated B. subtilis variants tolerating high amounts of glyphosate. Currently, these strains are used to develop and characterize a glyphosate detection system, which is based on fluorescently labeled bacteria. We also plan to engineer the bacteria for glyphosate inactivation using the glyphosate N-acetyl-transferase.

GreatBay China

Region: Asia - China
Section: High School
Track: High School
Poster: Zone 1 - #2 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room309 - 2:45 PM - 3:15 PM

mCATNIP: microbial Compartmentalization AssisTed Nepetalactol Ingredient Production

Nepetalactone is the active ingredient in catnip, a feline attractant, and a potential green pesticide. It has a common precursor, nepetalactol, with other plant-derived compounds of great therapeutic value, such as vincristine (an anti-cancer drug). We aim to synthesize nepetalactol through the co-culture of E. coli and yeast where E. coli generates the intermediate geraniol, and yeast continue to convert geraniol to nepetalactol. Endogenous genes in yeast are deleted to reduce shunt products. Besides, we design, characterize, and use a library of transcription activator-like effectors (TALE) stabilized promoter to regulate the heterologous gene expression in E. coli. Our applied design conceives the future application of nepetalactone on stray cat control, which we consider as an opportunity for public engagement and education.

Grenoble-Alpes

Region: Europe - France
Section: Undergraduate
Track: Diagnostics
Poster: Zone 1 - #70 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room309 - 11:30 AM - 12:00 PM

Phagyzer' : a fully automated detection device in the superbugs era.

Bacteriophages are viruses that kill specifically, and with a relative efficiency, strains from a bacterial species. They are thus a viable alternative to antibiotics that our fully automated device aims to promote. Our project is designed to: identify a pathogenic bacterium; detect if this bacterium presents an antibiotic resistance marker; select the most effective phages for a therapy. As a proof of concept, we targeted Pseudomonas Aeruginosa, a bacterium causing opportunistic lung infections in immunosuppressed patient. We created DNA probes targeting a housekeeping gene and an antibiotic marker of PAO1. In parallel we automated the different processes required for detection with DNA probes: from the DNA extraction after lysis to a fluorescence measurement via a bacterial transformation. Hence, untrained healthcare professionals will eventually be able to take a sample from a patient, run it through our system, wait for a few hours and get information to decide of a therapy.

Groningen

Region: Europe - Netherlands
Section: Overgraduate
Track: Manufacturing
Poster: Zone 4 - #238 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room304 - 2:45 PM - 3:15 PM

StyGreen: Bioplastic from cellulosic waste through consolidated bioprocessing

Current production of styrene, an important plastic monomer, is oil based. As an alternative to oil based styrene we aim to produce styrene from a presently underused wastestream: cellulosic waste. Our system consists of both breaking down cellulose to glucose and subsequent styrene production in Saccharomyces cerevisiae. First the cellulose is degraded by an established cellulosome complex containing different cellulases and a cellulose binding domain. By complexing the cellulases and anchoring the complex to the cell wall the efficiency of the cellulosome is enhanced synergistically. The freed glucose is taken up and used for growth and production of phenylalanine. Conversion of phenylalanine to styrene occurs in two steps, first the phenylalanine ammonia lyase enzyme (PAL2) is introduced, which enables the yeast to convert phenylalanine into trans-cinnamate. The final step of our cascade is catalyzed by a native enzyme, producing styrene from trans-cinnamate.

GZHS-United

Region: Asia - China
Section: High School
Track: High School
Poster: Zone 2 - #145 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room207 - 11:00 AM - 11:30 AM

And then there were none (mosquitoes)

Our project is to make a new biological mosquito killer to kill mosquitoes in an environmentally friendly way. Mosquito-borne diseases such as dengue and Zika are prevailing around the world and causing death of a great number of people every year. Therefore, controlling mosquitoes is of great importance. There are two active components in our product: protein Cry11Aa and recombinant Aedes aegypti densoviruses. Protein Cry11Aa is solubilized in mosquito mid-gut and can lead to cell lysis when binding the receptor on cell membrane. The recombinant Aedes aegypti densoviruses can express insect-specific toxin, which kill mosquito by to affect insect neuronal sodium conductance. We mix them together to make effective and environmental mosquito killer. The new mosquito killer shows a high specificity for mosquitoes as a host. It is relatively stable in the environment and have the potential to spread and persist in mosquito populations.

H14Z1 Hangzhou

Region: Asia - China
Section: High School
Track: High School
Poster: Zone 2 - #162 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room306 - 4:15 PM - 4:45 PM

Production of several liver-saving factors in Lactobacillus

After literature survey, several key liver-saving factors were screened out and further synthetic pathways were constructed in Lactobacillus. This in-vivo strategy will be super to the traditional production of these factors in industry.

HAFS

Region: Asia - Korea
Section: High School
Track: High School
Poster: Zone 2 - #109 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room312 - 4:15 PM - 4:45 PM

Minicell-based oral delivery of Insulin

Type 1 and 2 Diabetes mellitus (T1DM, T2DM) are caused by inappropriate insulin production. The former results from the lack of ß cell, while the later results from insulin resistance. In order to treat T1DM as well as severe cases of T2DM, patients should be injected with insulin analog multiple times a day. Because these analogues are readily degraded upon oral intake, the only method of injecting insulin analog is via invasive methods. We aimed to develop minicell-based insulin delivery system that can be orally administered. Minicells are achromosomal cells that do not reproduce. Overexpression of FtsZ gene in Escherichia coli induces abnormal cell division that produces minicells. Through gibson assembly, we have engineered the minicell that produce single chain insulin associated with cell penetrating peptide that facilitates cellular intake. The cells lyses in response to bile salt, which leads to targeted secretion of insulin in intestine.

Hamburg

Region: Europe - Germany
Section: Overgraduate
Track: Environment
Poster: Zone 1 - #82 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room311 - 9:00 AM - 9:30 AM

Reagents of S.H.I.E.L.D.

Malaria is one of the deadliest diseases worldwide. Extraordinary efforts are made to reduce malaria infections with limited success. All currently available applications, which look to prevent transmission by mosquitoes, are limited by the vast infrastructural differences in affected regions. With the Sustainable Human-Imitating Elimination and Lure Device (S.H.I.E.L.D.) we developed a mosquito trap tailored especially to the requirements of infrastructurally and economically disadvantaged regions. S.H.I.E.L.D. employs a self-sustaining co-culture of cyanobacteria and engineered E. coli which produce a complex mosquito attractant mixture as well as a targeted bioinsecticide. Careful implementation of novel regulatory circuits limiting cell growth, responding to nutrient availability, and monitoring metabolic load allows sustained in-trap production of attractants and insecticide over extended periods of time. The durable trap case with nano filter, co-culture separation and hydrogel reservoir ensures biosafety and brings together our no-maintenance sustainable solution to one of world's biggest problems.

Harvard

Region: North America - United States
Section: Undergraduate
Track: New Application
Poster: Zone 3 - #212 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room310 - 10:00 AM - 10:30 AM

Degratin: a story of keratin degradation

Keratosis pilaris and Seborrheic keratosis are characterized by a buildup of keratin which are accompanied by redness and rashes. In severe cases, these skin conditions may be precancerous. Keratin is difficult to degrade due to the nature of its protein structures. However, complete degradation can be induced by the synergistic capacity of endo-acting, exo-acting, and oligopeptide-acting keratinases. We have engineered strains of E.coli to produce these keratinases and secrete them through the curli secretion pathway. We then encapsulated these modified bacteria in a hydrogel only permeable to the enzymes and essential nutrients for growth. Thus, we've created a prototype for a keratin-degrading patch to place on the afflicted area to mitigate the lesion, eliminating the need for conventional invasive treatments. The development of easily produced keratinases lends to future uses, such as management of agricultural waste and facilitated research in precancerous growths linked to excess of keratin.

Hawaii

Region: North America - United States
Section: Overgraduate
Track: New Application
Poster: Zone 2 - #113 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room306 - 12:00 PM - 12:30 PM

Delivering Transgenes to Corn Centromeres

Nature has provided a remarkable system to insert genes into functional centromeres of grass genomes. Specifically, centromeric retrotransposons (CR) have the unique ability to insert themselves into the centromere by targeting a yet unidentified docking agent. We plan to adapt this system to insert genes of interest into centromeres. Centromeres are advantageous transgene targets because they lack recombination, allowing the stacking of multiple traits. Retrotransposons, or 'jumping genes,' self-replicate and package their genome into self-assembling virus-like particles (VLPs), then reinsert (or 'jump') themselves into a new chromosomal location. To measure the stability of VLPs for packaging molecular cargo, we cloned the full-length gene encoding the CR gag protein and successfully generated VLPs in vitro. We also tested the efficiency of different gene constructs in forming VLPs in vitro. Electron microscopy can confirm VLP assembly, however, we plan to develop a convenient fluorescent assay to assess VLP assembly.

HBUT-China

Region: Asia - China
Section: Undergraduate
Track: Environment
Poster: Zone 5 - #278 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room207 - 2:15 PM - 2:45 PM

Nickel Hunter2.0

This year's iGEM team decided to continue the work started by last year's team with the Nickel Hunter project; a biological device to detect nickel ions in the environment. Two shortcomings of the previous design were a small measurement range, and low precision. This year we added the nickel ions channel protein NikABCDE gene to the original gene element allowing the ions to enter the cell more smoothly, which has improved both of these issues. We also replaced the RFP gene with the luciferase LuxCDABE gene. The reporter gene emits fluorescence in response to nickel ions which further enhances our measurement precision. It also provided the opportunity to develop a biosensing instrument for real-time nickel ions detection. Our changes improved sensitivity and range, as well as provided an opportunity for a new method of nickel ions detection.

HebrewU

Region: Asia - Israel
Section: Overgraduate
Track: Environment
Poster: Zone 1 - #51 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room302 - 9:00 AM - 9:30 AM

The Catalysis of Dioxin Degradation

Dioxins, a family of chemical compounds, pose a serious threat to humans, animals, and the environment. Classified as persistent environmental pollutants, these compounds move up the food chain via bioaccumulation; consequently, they are found in very harmful concentrations by the time the reach humans. Our team has set out to engineer a metabolic pathway for the complete degradation of dioxins, and detoxification of chlorinated compounds. The pathway would involve the uptake of these pollutants and their subsequent breakdown into molecules that would enter organisms' native metabolism. We are testing the pathway in S. cerevisiae, and have prepared expression vectors and means to engineer a multitude of plants. By deploying such pathways directly into endemic plants, our solution can be tailored to specific regions. Furthermore, because we can efficiently control plant reproduction, we can responsibly implement synthetic biology to solve this issue in a non-invasive and ecological manner.

HFLS ZhejiangUnited

Region: Asia - China
Section: High School
Track: High School
Poster: Zone 2 - #129 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room207 - 11:30 AM - 12:00 PM

Formaldehyde Eliminator: Engineered Microbes for Detecting and Biodegrading of Formaldehyde

Formaldehyde brings different degrees of harmful symptoms to us humans, such as eye, throat and skin irritation, and even carcinogenicity, which is widespread used in construction and decoration industries. In previous iGEM projects related to formaldehyde, several problems still need to improved, such as 1) the present sensing threshold of formaldehyde concentration (~ 10 ppm) is far upper beyond the environment-protecting standard (~ 0.1 ppm); 2) the degrading system seems to work unstably, although some survival or duration after formaldehyde addition was observed. Our project is aiming to construct a more sensitive and effective E. coli-based system for detecting and further degrading formaldehyde in environments, basing on current systems (already registered as BioBrick parts).

HK HCY LFC

Region: Asia - Hong Kong
Section: High School
Track: High School
Poster: Zone 1 - #55 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room302 - 2:45 PM - 3:15 PM

A Self-Assembled DNA Tweezer Nanomachine - New Approach for the Diagnosis of Spinocerebellar Ataxia(SCA3)

The situation of SCA was described by Professor Edwin Chan during interviews. The difficulties encountered by patients from different stages of SCA were shared in a workshop with Hong Kong Spinocerebellar Ataxia Association. The SCA3 relates to either up or down regulation of four miRNAs biomarkers. A new approach for the diagnosis of SCA3 will be developed under this study. Under the mentorship of the University of Hong Kong, a DNA tweezer nanomachine is employed to detect target SCA3 biomarkers. When the desired miRNA hybridized to the recognition site on the tweezers, the nanomachine is turned from an open state to a closed state, which allows the assembly of the split strand G-quadruplex. The G-quadruplex acts as an aptamer and binds to hemin. The hemin-mediated peroxidase activity produces a color change as a signal. This alternative diagnostic method would have further implication on monitoring the onset and progress of SCA3.

HKJS S

Region: Asia - Hong Kong
Section: High School
Track: High School
Poster: Zone 1 - #46 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room304 - 10:00 AM - 10:30 AM

Carbon dioxide Reduction to Methane using Modified Nitrogenase with PET decomposition as Primary Carbon Source

Poly(ethyleneterephthalate) (PET) is a prevalent material which can is used in various applications, while bringing adverse effects to the environment. An enzyme, PETase, can degrade the highly-crystalized PET to mono-(2-hydroxyethyl) terephthalic acid (MHET), terephthalate and Bis(2-Hydroxyethyl) terephthalate. MHET is also further decomposed by MHETase to terephthalic acid and ethylene glycol (EG). EG can be further broken down in E. coli K-12 to produce carbon dioxide. Carbon dioxide, however, is a notable greenhouse gas. Using the mutagenesis of the amino acid residues of nifD in nitrogenase, the substrate binding site can be modified so that carbon dioxide can undergo the multi-electron reduction to methane. We propose an efficient carbon dioxide reduction system with the decomposition of PET as the primary carbon source. PETase, MHETase, and amino acid substituted nitrogen fixation genes in MoFe nitrogenase will be expressed in a fast-growing bacterium, E. coli.

Hong Kong HKU

Region: Asia - Hong Kong
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 2 - #117 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room311 - 11:00 AM - 11:30 AM

In vivo synthesis of therapeutic DNA nanostructures

DNA nanotechnology has been evolving fast in the past few decades and has found various new applications in biomedicine. Currently, most functional DNA nanostructures are assembled in vitro, using chemically synthesized custom oligonucleotides. Our project aims to harness the synthetic ability of bacteria to accelerate the production of functional DNA nanostructures. Multiple DNA nanostructures with aptamers and strand-displacement toeholds were designed for breast cancer therapy. We characterized their actions in vitro and evaluated their therapeutic effects on human breast cancer cell line. To synthesize these DNA nanostructures, a reverse transcription system consisting of three plasmids was designed to operate inside E. coli. By demonstrating a simple and scalable biological production method of functional DNA nanostructures, we made a foundational advance in synthetic biology.

Hong Kong HKUST

Region: Asia - Hong Kong
Section: Undergraduate
Track: Environment
Poster: Zone 3 - #190 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room304 - 11:30 AM - 12:00 PM

From plastics to the power line

Polyethylene is the most widely used plastic and arguably one of the most versatile materials to ever be synthesized. Its practicality and convenience however, have come at a great environmental cost. Polyethylene takes millennia to decompose, leeching harmful microplastics into the environment. We approached this pressing issue from a synthetic biology perspective, making use of E. coli engineered with genes encoding for laccase to degrade polyethylene into smaller alkane chains. Our team recognizes the opportunity to further advance this project by addressing another key issue – energy. Using Shewanella oneidensis MR-1 strain's inbuilt extracellular electron transport mechanism in tandem with genes responsible for alkane metabolism derived from Desulfatibacillum alkenivorans, we will generate electricity from the metabolism of degraded polyethylene, hoping that it will one day help in solving the world's growing energy needs. Thus, our project serves as an integrated effort to simultaneously solve two crucial problems.

Hong Kong JSS

Region: Asia - Hong Kong
Section: High School
Track: High School
Poster: Zone 5 - #297 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room312 - 9:30 AM - 10:00 AM

A Synthetic Approach to Absorbing Copper Ions in Aquaponics

Heavy metal pollution has been a hot issue among the society, copper is one of the most universal types of pollutant. In aquaponics, accumulation of copper ions is toxic to organisms. In sight of this, we aimed to create a cost-effective device for metal ions removal from water. In this project, metallothioneins, a type of protein capable of binding metal ions, was expressed in E. coli. Copper absorption capacity of the transformed bacteria is tested. From our results, E. coli can absorb copper ions at 10 mg/L and 2 mg/L. The is no significance difference between untransformed and transformed bacteria at 10 mg/L. At 2 mg/L, the transformed bacteria expressing Elsholtzia haichowensis Metallothionein 1 (EhMT1) slightly enhances the copper absorption ability. At last, we tried circulating E. coli inside dialysis tubings, receiving positive results, it is confirmed the idea using bacteria to remove copper ions in water is feasible.

Hong Kong-CUHK

Region: Asia - Hong Kong
Section: Overgraduate
Track: Diagnostics
Poster: Zone 2 - #157 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room309 - 3:15 PM - 3:45 PM

RAPID(RNA Aptamer Probe for Influenza Detector)

Transmissible diseases such as influenza have threatened the lives of people in Hong Kong and worldwide. However, while cold-flu differentiation remains difficult for non-experts, subtyping for epidemic control and treatment scheming is inaccessible for small clinics. In our project, we have constructed a sequence-specific RNA probe that increases its fluorescence by 10-fold upon target recognition. It is proven in a cell-free context and has the potential to expand to cellular applications. We also developed a mobile phone-based fluorometer coupled with its external software, collectively called Tracer. (The combination of hardware calibration and machine learning analysis may provide signal measurement with orthogonality and accuracy.) The tools can be combined into a user-friendly kit, allowing quick determination of their infection status using their nasal fluid, while the data obtained from a population of software users can be gathered for epidemic monitoring. This project provides a novel, rapid RNA-based influenza diagnostic system.

HSHL

Region: Europe - Germany
Section: Overgraduate
Track: Food & Nutrition
Poster: Zone 3 - #170 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room312 - 10:00 AM - 10:30 AM

Enabeling Tobacco plants to hyperaccumulate heavy metals

Our challenge is to solve the problem of heavy metal polluted soil, especially in areas of high industrial use, such as mining. We enable a tabacco plant to hyperaccumulate cadmium and lead by transfering genes of arabidopsis halleri and adding other special abilities that support accumulation of heavy metals.

HUBU-Wuhan

Region: Asia - China
Section: Undergraduate
Track: Energy
Poster: Zone 5 - #301 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room302 - 2:15 PM - 2:45 PM

Building up biological parts in non-model bacterium Zymomonas mobilis for converting waste cartons into biofuels

Although many genetic parts have been characterized, they are mostly from and for model species with limited studies on their compatibility. Additionally, significant amount of omics data has also been accumulated but not widely utilized yet. Zymomonas mobilis is a non-model Gram-negative ethanologenic bacterium with many desirable characteristics to favor the production of lignocellulosic biofuels. In this project, a reporter-gene system for Z. mobilis was established to effectively characterize genetic parts such as promoters and RBS. Moreover, promoter strength was systematically predicted based on omics datasets. These genetic parts including their compatibility were then characterized and further utilized for building an isobutanol-production module to convert campus waste paper cartons into renewable biofuels of ethanol and isobutanol. The success of our project will not only build up a reporter-gene system, basic and composite parts for the non-model species, but also provide renewable biofuels while protecting the campus environment.

HUST-China

Region: Asia - China
Section: Undergraduate
Track: Energy
Poster: Zone 1 - #26 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room311 - 12:00 PM - 12:30 PM

Optopia

To convert optical energy into electric energy in a clean and sustainable way, Optopia is designed as a photovoltaic system consisting of photosynthetic microorganism (Rhodopseudomonas palustris) and electrogenic microorganism (Shewanella oneidensis). Synthetic biology strategies are applied to the system to trigger production and export of lactate in Rhodopseudomonas palustris, as well as to improve efficiency of lactate utilization and extracellular electron generation in Shewanella oneidensis. Compared to Cyanobacteria, also a kind of photosynthetic microorganism but generating oxygen in photosynthesis, Rhodopseudomonas palustris serves as a better carbon resource provider for Shewanella oneidensis, not only because of its anaerobic photosynthesis maintaining an anaerobic environment required for extracellular electron generation in Shewanella oneidensis, but also due to its capacity of reusing the waste from Shewanella oneidensis. Hence, functioning as a compatible and mutually beneficial optical MFC (Microbial Fuel Cell), Optopia creates a novel and optimized approach to utilize clean resources through optical-electric conversion.

HZAU-China

Region: Asia - China
Section: Undergraduate
Track: Therapeutics
Poster: Zone 4 - #248 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room208 - 3:15 PM - 3:45 PM

Pyroptosis: a new approach for cancer therapy

Pyroptosis is an inflammatory form of programmed cell death. The morphology of pyroptosis is characterized by cell swelling which causes the release of cytoplasmic contents. Recent studies have demonstrated that the N-terminal domain of GasderminD protein accounts for pyroptosis of the host cell, which may be exploited for tumor suppression. In our project, we redesign Salmonella to act as a delivery vehicle that can target tumor cells and replicate in their cytoplasm. By inducing the bacterial expression of the N-terminal domain of GasderminD, bacteria are led to lysis and release this protein into the cytoplasm of tumor cell and then induce pyroptosis to the tumor cell by making membrane pores. The lysate of cell rupture during pyroptosis destroys the tumor microenvironment and attracts immune cells into tumor bed to kill tumor cells. Our project which aims to induce pyroptosis to tumor cells provides a new approach for cancer therapy.

HZNFHS China

Region: Asia - China
Section: High School
Track: High School
Poster: Zone 5 - #261 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room306 - 9:30 AM - 10:00 AM

Genetic Engineered Germ For Improving the Soil Environment of Tea Trees and More

Our Project is finding effective gene in some particular gems and applying them to another germ to created a engineered germ for improving the soil environment.

ICT-Mumbai

Region: Asia - India
Section: Undergraduate
Track: Environment
Poster: Zone 1 - #56 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room312 - 3:15 PM - 3:45 PM

SmartSoil: Rooting for Sustainable Agriculture

Plants secrete many chemicals in the soil around their roots. These exudates can act as molecular signals for microorganisms in the rhizosphere, which can in turn modulate gene expression. We wish to exploit this natural phenomenon to engineer microorganisms to sense and respond to plants. A synthetic symbiotic association that helps plants grow better and resist diseases will reduce dependence on artificial fertilizers and pesticides. Toward this end, we are studying changes in gene expression in the common soil bacterium, Bacillus subtilis, in response to root exudates of rice, wheat, tomato and soybean plants. As a case study, we are constructing a genetic amplifier using an exudate-inducible promoter to produce phosphatase, which will help solubilize organic phosphate present in the soil. This represents an advance toward smart soil management practices and sustainable agriculture.

IISc-Bangalore

Region: Asia - India
Section: Undergraduate
Track: Therapeutics
Poster: Zone 1 - #79 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room310 - 12:00 PM - 12:30 PM

PhageShift: Improving treatment of bacterial infections through novel modifications to conventional phage therapeutics

Bacteriophages have long been proclaimed as the answer to antibiotic resistant bacterial infections. However, simultaneous resistance to phages and antibiotics is a concerning possibility. Anticipating this problem, we have developed an in-silico protein modification algorithm that hard-codes mutual exclusion of antibiotic and phage resistance. An engineered phage with high affinity for phosphoethanolamine, the molecule that confers colistin resistance, has been developed as a proof-of-concept. This system has potential applications in drug delivery, ligand extraction and study of bacterial membrane proteins. We are also building a phage mediated immune recruitment system that ensures removal of the pathogen without significant toxin release - a fatal condition in immuno-compromised individuals. This is accomplished by a monocyte chemokine encoded into a lysis deficient phage genome that recruits phagocytic immune cells to the site of infection. PhageShift thus takes a leap forward in addressing potential problems with phage therapeutics before they arise.

IISER-Bhopal-India

Region: Asia - India
Section: Undergraduate
Track: Environment
Poster: Zone 5 - #267 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room312 - 11:30 AM - 12:00 PM

MethNote: A prototype of methane biosensor constructed by genetically modifying Pichia pastoris

Methane is a Greenhouse gas associated with Global Warming, and green methods are desired for its real-time monitoring. Thus, we have developed the prototype of a robust field-applicable methane biosensor, MethNote. We found an enzyme-complex methane monooxygenase(MMO) from Methylococcus capsulatus, a methanotrophic bacterium, that converts methane to methanol. We expressed soluble-MMO in the methylotrophic yeast, Pichia pastoris, which harbors a plasmid expressing the reporter gene under a methanol inducible promoter AOX. Thus, linking methane uptake to a reporter gene expression generates the proposed methane biosensor. The inclusion of sMMO pathway was also checked by metabolic modeling. The constructed part will be a useful contribution to the iGEM repository. A commercial design of MethNote will find widespread applications in environmental monitoring of methane. In future studies, we also anticipate an additional application of Mut- strain of P. pastoris expressing sMMO in biofuel production through methanol sequestration.

IISER-Kolkata

Region: Asia - India
Section: Undergraduate
Track: Therapeutics
Poster: Zone 2 - #159 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room207 - 4:15 PM - 4:45 PM

BACMAN

Arsenic contamination of ground water is a serious issue in West Bengal (India). Each year a large population falls victim to severe Arsenic poisoning due to ingestion of heavy doses of Arsenic through water and food over years. Small amounts of water can be purified before drinking using several available techniques such as chemical filtration kits etc. but no decontamination techniques exist to remove Arsenic uptaken by food crops (rice) or fishes through polluted water used to raise them in paddies or ponds. We, Team IISER-Kolkata plan to design a probiotic bacteria that can efficiently intake and sequester Arsenic at the physico-chemical conditions existing in the human gut. We aim to design an affordable and effective pill to administer the probiotic microbes into the gut. The microbes will then colonize in the gut and outcompete GI epithelia at Arsenic abosorption thus shielding humans from accumulating the ingested heavy-metal.

IISER-Mohali

Region: Asia - India
Section: Undergraduate
Track: Food & Nutrition
Poster: Zone 4 - #236 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room311 - 2:15 PM - 2:45 PM

FearOmone: Cat pheromone based Bio-synthetic deterrent to minimize post harvest losses caused by rat manifestation.

FearOmone seeks to exploit the innate fear of murines for the cats. Our challenge is to create genetically engineered yeast producing cat pheromone-based biosynthetic deterrent and prepare a device capable of diffusing this cat pheromone to areas surrounding grain storage facilities, thereby keeping murines away. Our first aim is to transform our host system, S. cerevisiae, with necessary synthetic gene circuits which will result in a recombineered yeast that mimics the cat nephron pathway for producing felinine. Next, we will conduct controlled experiments in the form of murine behavior assays to test the effectiveness of our synthetically derived felinine as a rat/mouse deterrent. Finally, we intend to design user-friendly and field-effective hardware to integrate with our yeast cells and run simulations on field data to understand murine behavior in realistic conditions and over a reasonable time-frame, with the intention of designing software for optimal dispersal of our FerOmone.

IIT Delhi

Region: Asia - India
Section: Overgraduate
Track: Foundational Advance
Poster: Zone 2 - #101 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room310 - 5:15 PM - 5:45 PM

Back & Forth with Recombinases

With the growth of synthetic biology, there has been an increase in the development of digital synthetic circuits, which requires biological logic gates that can accept a binary input and generate a suitable binary output. Often biological systems are unable to provide sharp and accurate input to output response due to reasons like noise, growth factors etc. Hence there exists a need of robust and reliable modules that can transform the analog and stochastic behaviour of biology into a digital response. We aim to develop recombinase based elementary constructs that would allow development of complex circuits with specialized functions with greater ease. Recombinases are enzymes that trigger site-specific recombination to perform excision/incision or inversion of genetic circuits, to produce the desired gene expression. Our project involves use of serine based recombinases to develop a novel recombinase based toolkit of elementary circuits such as feedforward loop, feedback loop etc.

IIT Kanpur

Region: Asia - India
Section: Undergraduate
Track: Environment
Poster: Zone 4 - #243 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room302 - 10:00 AM - 10:30 AM

SWASH: Hacking E.Coli to clean the cleansing agent

There are about 2 billion people worldwide who don't even have access to clean drinking water. This has resulted in a growing need for solutions to tackle the problem of water pollution. One of the major chemical wastes discharged in sewage and as industrial effluents are detergents. This year we plan to provide a reliable and robust solution to this problem by focusing on sodium dodecyl sulfate(SDS) which is an anionic biodegradable surfactant and is the major component of detergents used around the world. Our project is concerned with developing a synthetic pathway in E.coli for extracellular expression of enzyme alkyl-sulfatase originally found in bacteria Pseudomonas aeruginosa to degrade SDS into commercially viable 1-dodecanol. As part of our project, we will also develop a bio-sensor to precisely quantify and characterize the by-products obtained as a result of SDS degradation.

IIT-Madras

Region: Asia - India
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 2 - #120 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room310 - 10:00 AM - 10:30 AM

ADaPtat1on : Expanding Toolkit for Acinetobacter baylyi

Acinetobacter baylyi is a gram-negative, soil-dwelling, non-pathogenic, naturally competent and nutritionally versatile organism especially known for its ability to degrade aromatic compounds. However, only a few tools are available for its gene manipulation. This year, we plan to expand the toolkit for A. baylyi ADP1 by making a synthetic promoter library along with codon optimized fluorescent reporter proteins to achieve better control over its expression rates. The codon table is not available for this organism. So we obtained sequence data of well-characterised proteins of this organism by filtering manually putative and hypothetical sequences and used this data to generate the codon table using CUTE - a tool of ChassiDex. The codon optimisation is done manually by replacing the less frequent codons with high-frequency codons based on the generated table. This can potentially open up various new exciting synthetic biology opportunities with this unexplored organism.

Imperial College

Region: Europe - United Kingdom
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 2 - #116 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room310 - 4:45 PM - 5:15 PM

PixCell: Electronic Control of Biological Patterning

Engineering complex biological systems requires precise control of gene expression. Current biological control systems fail to provide the reversible and programmable spatiotemporal control of electrical systems used in industry. Electrogenetics is an emerging field of synthetic biology investigating electronic detection and control of gene expression. Presented here is the development of the first aerobic electrogenetic control system in E. coli. It functions through altering transcriptional activation of the SoxR/PsoxS redox-signalling system by controlling the oxidation of redox-mediators using an electrode. The potential of this system for precise spatial control is demonstrated using an affordable, custom electrode array to induce pattern formation in a lawn of cells. Patterning was a necessary condition for the evolution of complex multicellular life, and as such the programmable patterning demonstrated serves as an essential tool for the development of multicellular synthetic biology.

iTesla-SoundBio

Region: North America - United States
Section: High School
Track: High School
Poster: Zone 1 - #77 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room208 - 10:00 AM - 10:30 AM

Factor C The Difference: A Synthetic Biology Alternative to the LAL Endotoxin Detection Assay

Many gram-negative bacteria naturally create compounds called endotoxins, which induce pathological symptoms including septic shock in humans. Limulus Amebocyte Lysate (LAL) testing, the gold-standard endotoxin detection test, is used in virtually every area of biomedical product development. The test is derived from horseshoe crab blood, including coagulation Factor C, the primary effector protein. Many horseshoe crabs die each year due to the bleeding process, straining populations and ecosystems along the US Atlantic Coast and in Asia, where it is less sustainable. Moreover, LAL testing is expensive, creating a barrier to biomedical innovation in low-resource settings. For these reasons, our team sought to synthesize a codon-optimized sequence of Factor C and integrate it into Bacillus subtilis (a gram-positive bacterium) using a pAX01 backbone with a xylose inducible promoter. In the future, we hope to design a detection mechanism to signal for the cleavage of Factor C and the presence of endotoxin.

Jiangnan

Region: Asia - China
Section: Undergraduate
Track: Manufacturing
Poster: Zone 5 - #274 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room304 - 2:15 PM - 2:45 PM

SuperVIP-Suspended universal plasma-enabled rapid vaccine production

Vaccine is one of the most cost-effective public heath solution, with cell-based approach being a promising production strategy. We are devoted to establish a cell line with self-owned intellectual property and feasible for rapid production of a broad spectrum of viruses, with the aim of reducing the cost of cell based virus production in the heath care sector. By constructing two biobricks and enabling three features to our chassis cells, we considerably reduced virus production cost by increasing virus titer per cell and virus-producing cells per fermentor, and broadening cells' virus sensitivity spectrum. We used computational modeling to explore genes for biobrick construction and cold atmospheric plasma ejecting device to further increase virus titer. We proved the significance of our project through systematically examining the needs of vaccine production companies including our close collaborator DaBeiNong, and disseminated knowledge related to vaccine and synthetic biology to the public.

Jiangnan China

Region: Asia - China
Section: Undergraduate
Track: Manufacturing
Poster: Zone 1 - #50 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room207 - 9:30 AM - 10:00 AM

Anti-Man

Lactic acid bacteria are the most promising microorganisms to act as live vaccines and microbial cell factory which can produce various chemicals. During fermentation processing, they suffer from various stress conditions, especially acid and cold stress.Therefore, we aim to develop an ideal food-safe grade microorganism with enhanced acid and cold tolerance. Genome mutagenesis combined with high-throughput technologies was performed on Lactococcus lactis NZ9000 to screen acid tolerance strain. Next, comparative transcriptomics analysis was performed on mutant and parent strain to investigate the response mechanisms of microbial cells during acid stress. Based on the proposed acid tolerance mechanisms, one new anti-acid component-msmK was discovered. Also, an anti-cold gene cspD2 was selected. The constructed recombinant strain L.lactis NZ3900/pNZ 8149-MsmK-CspD2 shows a significant survival advantage compared with L.NZ3900/pNZ 8149, which means our product exhibited enhanced acid and cold tolerance. This study provides valuable insight into the development of robust industrial strains.

Jilin China

Region: Asia - China
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 4 - #252 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room208 - 2:45 PM - 3:15 PM

The collection of synthetic RNA-based thermosensors with different sensing temperatures

Many strategies could be used by bacteria to coordinate temperature-dependent gene expression. A well-known class of biological temperature sensitive element is RNA-based thermosensor, which is thermoregulatory RNA sequence in the 5'-untranslated region of mRNAs. RNA thermosensors could induce equilibrium shift between closed and open conformations of the translation initiation region under temperature variation condition, and lead to mRNA degradation or ribosome accessibility, thereby controlling the efficiency of translation initiation. However, natural RNA-based thermosensors are difficult to be engineered with the narrow sensing temperature range. Therefore, this year based on free-energy method, we designed a series of synthetic RNA-based thermosensors, which can be engineered easily with broader sensing range. Then, we predicted their theoretical sensing temperature, detected the practical threshold by experimenting setting temperature gradient, and built the standard parts collection.

JMU Wuerzburg

Region: Europe - Germany
Section: Undergraduate
Track: Diagnostics
Poster: Zone 1 - #28 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room309 - 11:00 AM - 11:30 AM

Test Tonic – a rapid diagnostic device for malaria

Malaria affects 200 million people every year as reported by the WHO. This disease is caused by different Plasmodium species, leading to different types of malaria. Therefore a successful therapy for malaria requires rapid identification of the species affecting the patient. We engineered Test Tonic, a qPCR-based diagnostic device, capable for detecting Plasmodium DNA. Test Tonic can not only detect Plasmodium in general but also uses our specifically engineered and optimized primer/probe pairs for the identification of individual Plasmodium species. As a low resource alternative to qPCR we investigate Recombinase Polymerase Amplification (RPA) for our Malaria diagnosis system. Providing isothermal DNA amplification, RPA avoids the need of an expensive thermocycler. These benefits of a quick, economically priced, easy to use and portable malaria test make Test Tonic suitable for the application in traveling situations and in areas without proper infrastructure and energy supply.

JNFLS

Region: Asia - China
Section: High School
Track: High School
Poster: Zone 5 - #281 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room311 - 12:00 PM - 12:30 PM

HCV, Aparecium!

We aim to develop a biosensor for detecting HCV by the nucleic acid aptamer, and the specific detection of trace HCV could be realized by rolling circle amplification, which has great significance to shorten the window period of HCV in clinic transfusion. HCV C gene was expressed, and collected secreted HCV C protein was used to bind specifically with the nucleic acid aptamer. Using the competing reaction of the target antigen, a highly sensitive fluorescent aptamer sensor was developed based on the rolling circle replication. When there is no target antigen, the aptamer complementary sequence binds with aptamer instead of the padlock probe; whereas when the aptamer probe binds with the target antigen, the complementary sequence hybridizes with padlock probe, which triggers rolling circle amplification reaction. Under the action of DNA ligase, the padlock probe is further cyclized and a rolling circle amplification occurs under the action of DNA polymerase.

KAIT JAPAN

Region: Asia - Japan
Section: Undergraduate
Track: Information Processing
Poster: Zone 3 - #175 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room306 - 10:00 AM - 10:30 AM

Challenge to suspended animation of cells

Conservation of cells, which is indispensable for regenerative medicine, now depends on freezing method. However, the freezing method has a low cell survival rate. Our idea is to preserve cells for a long time using suspended animation. Our definition of the state of cells suspended animation is state of hypometabolism followed by ATP depression, and then returned to the original state. H‚ÇÇS is believed to be involved in this suspended animation process at the individual level. The objective of our project is to let the E.coli respond to the signal of the cell, and secrete the necessary amount of H‚ÇÇS synthase (CTH) for the state of suspended animation to lower the metabolism. The secretion of CTH is regulated by RhlR . When the cells to be preserved become the state of suspended animation, the secretion of CTH from E.coli will stop, and most of the E.coli will also be suicided.

KCL UK

Region: Europe - United Kingdom
Section: Overgraduate
Track: Foundational Advance
Poster: Zone 1 - #37 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room311 - 9:00 AM - 9:30 AM

Developing a novel tool to overcome antibiotic resistance by regulating gene expression in bacteria

Antibiotic resistance is a major concern worldwide, estimated to cause 1 death every 4 minutes. Antibiotics for fatal infections such as tuberculosis and pneumonia have become less effective due to bacterial resistance to drug-based treatments. This phenomenon has led pharmaceutical companies to develop new antibiotics to try overcome this problem. However, this is costly and contributes to the emergence of multi-resistant bacterial strains. Throughout the years bacteria have developed mechanisms to resist antibiotics such as DNA mutagenesis, cell wall modification and other; most involve various bacterial proteins that have been modified or repurposed to protect bacteria. It has been shown that down-regulating these proteins' expression helps maximise the effects of antibiotics. Therefore, our team aim to engineer a library of sRNAs, providing a platform for new tools to regulate gene expression. Our approach therefore synergises with current antibiotic treatment regimes, creating an innovative therapeutic tool.

KUAS Korea

Region: Asia - Korea
Section: Undergraduate
Track: New Application
Poster: Zone 2 - #139 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room310 - 11:30 AM - 12:00 PM

Bacterial Evolutionary Game Simulation (BEGS) for Snowdrift, Harmony, Stag Hunt and Prisoner's Dilemma Games

How does microbial community perpetuate or perish? Like human society, in nature, microorganisms not only compete but also cooperate with each other for a successful establishment of a microbial community. The major goal of our project is to construct an accessible evolutionary game model using a synthetic microbial population controlled by genetic circuits. Here, we use E. coli to form a microbial population composed of the "cooperator" and the "cheater". "Cooperator" which displays β-glucosidase on the cell surface breaks down cellobiose into glucose. This enzymatic activity allows both "cooperator" and "cheater" to share glucose as an energy source (public goods). "Cheater" which expresses GFP is now able to proliferate within microbe population by glucose from cooperator. Based on the combination of mathematical modeling and experiments, we are going to find critical parameters for evolutionary games such as harmony, snow-drift and prisoner’s dilemma for controlling population dynamics of the microbial community.

Kyoto

Region: Asia - Japan
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 3 - #180 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room310 - 4:45 PM - 5:15 PM

Swallomyces cerevisiae ~Building a biological desalination system~

The conformation, kinetics, and binding of macromolecules are highly sensitive to the ion environment so we must control it to succeed biological research. Thus, there is demand of ionic control tool which supports bio-sensing and bio-remediation for research usage. So we addressed to develop such a biological deionization tool. This year we focused on Na+ which is basic ion in biology, and desalination system can be realized by salvaging Na+ in solution as paste of Saccharomyces cerevisiae by applying two attributes. One is highly Na+ uptake of their plasma membrane and vacuolar by transfer of transporters. The other is surface interaction aggregation system using SdrG-Fgβ protein connection through surface display. In addition, we calculate initial amount of our yeast to adjust to desired concentration by reconstructive membrane transport mathematical model. Furthermore, this tool can be applied to bioremediation and expanded to other ions.

LACAS BioBots

Region: Asia - Pakistan
Section: High School
Track: High School
Poster: Zone 1 - #21 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room310 - 2:15 PM - 2:45 PM

No title

No abstract

Lambert GA

Region: North America - United States
Section: High School
Track: High School
Poster: Zone 2 - #156 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room302 - 3:15 PM - 3:45 PM

Captivate: Capture the Data & Activate the Response

Vibrio cholerae, a pathogenic waterborne bacteria, impacts millions of people annually. Cases are most prevalent in developing countries with a lack of practical diagnostic methods and clean water. Lambert iGEM created a proactive, inexpensive diagnostic kit for V. cholerae detection utilizing frugal hardware devices and toehold switches. These riboregulators activate gene expression in response to predetermined RNA sequences. Engineering E. coli to detect V. cholerae, we targeted ctxB, a non-toxic subunit of a gene specific to all pathogenic V. cholerae. Our Chrome-Q system quantifies aquatic V. cholerae presence utilizing HSV values while the Color-Q app inputs data into our machine learning model, CALM. Utilizing rainfall, conflict, and cholera case/death data, CALM is able to accurately model the Yemeni V. cholerae outbreak, forecasting outbreaks weeks in advance. With this diagnostic kit, Lambert iGEM addresses V. cholerae epidemics by predicting outbreaks, thus providing low-cost sustainable diagnostic tools while enhancing quality prediction.

Leiden

Region: Europe - Netherlands
Section: Overgraduate
Track: Therapeutics
Poster: Zone 3 - #193 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room306 - 9:00 AM - 9:30 AM

Fifty Shades of Stress: A colourful screening platform for detecting bacterial cell stress

The number of drug-resistant pathogenic bacteria is rising at an alarming rate, while no new classes of antibiotics have been discovered in the past three decades. We tackle this twofold problem using an innovative open-source screening platform and an extensive societal outreach program aimed at spreading awareness of antimicrobial resistance. Current drug discovery efforts suffer from tunnel vision: screening is limited to lethal compounds. Our project aims to enable rapid discovery of compounds that stress bacterial cells, which can be used to establish novel synergistic combination therapies. Such combination therapies have proven to reduce resistance development in HIV and cancer treatments. In our project, we created an E. coli reporter strain that produces fluorescent proteins in response to distinct classes of cellular stress, by utilising promoters which become activated under specific stressful conditions. This specificity allows for determination of the mechanism of action and for establishment of synergistic combination therapies.

Lethbridge

Region: North America - Canada
Section: Overgraduate
Track: Foundational Advance
Poster: Zone 4 - #233 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room304 - 2:45 PM - 3:15 PM

VINCEnT: A modular Viral-Inspired Novel Cargo Encapsulation Toolkit for targeted delivery of molecules to cells

The 2018 Lethbridge iGEM team is developing a Viral-Inspired Novel Cargo Encapsulation Toolkit ('VINCEnT') for simple design and assembly of protein nanocompartments (PNCs). This standardized toolkit can be used to produce custom PNCs for targeted delivery of various cargos including nucleic acids, proteins, and small molecules to desired cell types. PNC design will be facilitated by our software platform, enabling informed selection of cell-targeting surface modifications, encapsulation proteins, and cargo-loading approaches tailored to the intended application. PNCs have wide-ranging utility from targeted drug delivery and gene therapy to materials synthesis and distribution of biological control agents. With the simplified design, standardized protocols, and modular components, less experienced users will be able to design and produce PNCs in a basic laboratory environment. We have also critically examined the 'dual-use' implications of making custom PNC production more accessible and have developed a risk assessment rubric for VINCEnT to help mitigate potential threats.

Lethbridge HS

Region: North America - Canada
Section: High School
Track: High School
Poster: Zone 3 - #174 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room310 - 3:15 PM - 3:45 PM

Cu Later: The Capture and Removal of Metal Ions from Solution Using Phage Capsid Display

Tailings ponds enclose 176 square kilometers of oil extraction waste in Alberta. They pose a serious issue, as they contain toxic products such as heavy metals that negatively affect the environment. Due to the difficulty of its separation, the potentially useful metals present in these tailings ponds are rendered useless. However, our system of bacteria and bacteriophage demonstrates a possible solution. The target metal being copper, we will use a copper-binding protein on bacteriophage capsids to bind the copper. Then, elastin-like polymers attached between the copper binding proteins and the capsid proteins will be used for inducible precipitation, bringing the metals to the bottom of the solution and allowing them to be repurposed. Cu Later is an innovative project by turning the waste in oil sands into opportunity, in addition to cleaning up the environment.

Linkoping Sweden

Region: Europe - Sweden
Section: Overgraduate
Track: Manufacturing
Poster: Zone 5 - #262 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room208 - 11:00 AM - 11:30 AM

The Folding Factory

The expression of proteins in bacteria is a way to enable production of biofuels, large scale production in the pharmaceutical industry, and research. However, mass production of certain proteins in bacteria is hindered by protein size or the complex folding structure of proteins. Protein folding has been shown to be assisted by chaperones, a protein aiding the expression of other proteins in bacteria. We illustrate this by co-expression of GroES and proteins that are problematic to express in E-coli. GroES is mostly known as a co-chaperone, but some studies indicate that it has a folding property on its own. We have aimed at investigating this further in order to create a system for expressing proteins in bacteria. We hope that our findings will give insight into sustainable ways for industrial protein production.

Lubbock TTU

Region: North America - United States
Section: Overgraduate
Track: Manufacturing
Poster: Zone 4 - #219 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room309 - 9:30 AM - 10:00 AM

Expanding the Synthetic Biology Toolkit for Polyamine Production

The metabolic engineering of E. coli has significant potential to provide an accessible cellular factory for the in vivo production of essential chemicals during space exploration. Recognizing the versatility of using E. coli for bio-manufacturing during space travel, we investigate applications in polyamine production. In particular, a diamine known as putrescine with medicinal and materials applications. To expand on earlier improvements of the product yield for putrescine in E. coli, we explore modifying the W3110 strain of K-12 E. coli. Additionally, we explore the use of TX-TL cell-free synthetic biology to design transcription factor-based biosensors for the detection of improved putrescine yield and to monitor other small molecules of interest. With these strategies we hope to improve the yield of putrescine in E. coli and to expand the synthetic biology toolkit for metabolic engineering.

Lund

Region: Europe - Sweden
Section: Overgraduate
Track: Manufacturing
Poster: Zone 3 - #172 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room306 - 12:00 PM - 12:30 PM

Using synthetic biology to increase recombinant protein yield via co-expression of Vitreoscilla hemoglobin

The use of Vitreoscilla hemoglobin (VHb) to increase recombinant protein yield via co-expression has been proven successful in various applications. However, recent studies have indicated that the success is largely dependent on the choice of associated expression system. While there are many ways of regulating VHb levels, there is to this end no simple nor standardized way of tuning the expression levels for a certain application. We present a set of inserts containing VHb expressed at various levels, created by utilizing the library of constitutive Anderson promoters. The effect on the cell growth was investigated by optical density measurements. The increase in recombinant protein yield was determined by co-expressing green fluorescent protein (GFP) and measuring fluorescence intensity by flow cytometry. Preliminary data suggest a positive correlation between VHb expression level and GFP fluorescence intensity. Further studies include expression under varying oxygen availability and expression of other target proteins.

LZU-CHINA

Region: Asia - China
Section: Undergraduate
Track: Therapeutics
Poster: Zone 4 - #246 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room309 - 4:15 PM - 4:45 PM

New therapy for gastric cancer based on TIL cells-exosomes mechanism

Gastric cancer is one of the most popular digestive malignant carcinomas in the world. Exosomes are cell-derived nanovesicles and act as vesicles for delivering micromolecular like miRNA. Here, we turn HEK 293 T cells and MGC803 cells into a manufacturing factory, massively producing exosomes with our target miRNA in it,whose function is related to reduce the viability of tumor cells.The three miRNA is obtained by bioinformation analysis.To be continued, considering the heterogeneity of tumor cells, we use inducible promoter to active three miRNAs separately. By changing the inducers' concentration, we want to grope optimum functional concentration range of miRNAs. Finally, we hope that this system can be used in tumor infiltrating T cells. TIL is an inactive T lymphocyte in tumor tissue whose function is inhibited because of tumor microenvironment. If the TIL were armed with our controllable miRNAs, a new therapy for gastric cancer treatment would appeared.

Macquarie Australia

Region: Asia - Australia
Section: Undergraduate
Track: New Application
Poster: Zone 1 - #20 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room207 - 10:00 AM - 10:30 AM

Chlorophyll-induced Vesicles (ChiVes) for metabolic engineering and protein purification

Recombinant proteins have diverse and important therapeutic and industrial utility, at present their purification is costly, time and labour intensive. Our research simplifies this purification process by sequestering desired proteins into synthetic vesicles, allowing for bulk purification via an operationally simple centrifugation step. These synthetic vesicles have been engineered into the expression host E.Coli. As previously shown in plants and algae, vesicle formation occurs spontaneously in the presence of chlorophyll and the enzymes needed for its biosynthesis. Cells grown in the dark recruit phospholipids to form crystalline aggregates known as prolamellar bodies. Subsequent exposure of the cells to light results in the conversion of these aggregates to vesicles. By mimicking this natural process, our cells can be selectively induced to capture valuable recombinant products in easily isolable vesicles. Additionally, through computational modelling and our human practices 'customer discovery' toolkit, we have validated the viability and potential impact of this research.

Madrid-OLM

Region: Europe - Spain
Section: Undergraduate
Track: Open
Poster: Zone 2 - #112 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room207 - 3:15 PM - 3:45 PM

Internet of BioThings

Society demands a better understanding of its environment. We require information about our surroundings, from the traffic density to the temperature distribution in the city we live. Generating and interconnecting this big amount of data is what we call the Internet of Things (IoT). There is no standard way of taking biological measurements within the frame of traditional IoT (i.e. the concentration in the air of viruses, toxins, allergens, etc). It is due to the instability of the reactives, the complexity of automating the laboratory protocols and the need of highly sensitive devices. Additionally, the economic cost of biological devices is remarkably high in comparison to traditional IoT gadgets. And this feature is key, as it is mandatory to extract data from a huge number of nodes. Our project deals with this issue, bringing together microfluidics, aptamer-based sensors, an affordable electrochemical metrological system and a big ammount of love.

Makerere University

Region: Africa - Uganda
Section: Undergraduate
Track: Environment
Poster: Zone 4 - #241 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room311 - 10:00 AM - 10:30 AM

Plastic biodegradation

Plastics are waste products that pollutes the environment we live in more especially clogging the sewage system in urban centers and toxins from decomposed plastics are introduced into ecological systems that humans often manipulate for food. A biological approach to resolving this problem is favorable because of its practicality and efficiency. Ideonella sakaiensis is a bacteria that naturally decomposes polyethylene terephthalate, we have decided to genetically modify E. coli cells to model the plastic degradation process by adding the Lipase and Chlorogenate Esterase genes from Ideonella sakaiensis into E. coli bacterial cells.

Manchester

Region: Europe - United Kingdom
Section: Undergraduate
Track: Food & Nutrition
Poster: Zone 2 - #143 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room311 - 2:45 PM - 3:15 PM

Man-Cheester: Development of Listeria monocytogenes biosensor for use in cheese starter cultures.

Listeria monocytogenes is a Gram-positive, rod-shaped, food-borne bacterium, capable of causing the rare, but potentially fatal, disease listeriosis. L. monocytogenes can replicate at temperatures as low as 0°C, allowing it to survive in industrial and domestic refrigerators. L. monocytogenes is often found in soft cheeses, making many varieties of cheese unavailable to those who are immunosuppressed. Man-Cheester aims to introduce the agr quorum sensing system from L. monocytogenes into bacteria used in the cheese making process. On detection of AIP, a key quorum sensing molecule of L. monocytogenes, a colour change will occur, causing the cheese to turn purple and alerting the consumer to its contamination. Our concept could be further developed to include other sources of L. monocytogenes contamination, such as meats, vegetables or kitchen surfaces, to prevent as many cases of listeriosis as possible.

Marburg

Region: Europe - Germany
Section: Overgraduate
Track: Foundational Advance
Poster: Zone 1 - #74 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room304 - 3:15 PM - 3:45 PM

Vibrigens - Accelerating Synbio: Establishing Vibrio natriegens as the new chassis organism for synthetic biology

Waiting for cells to grow is an enormous time sink for synthetic biologists. Cloning cycles with the current standard, Escherichia coli, typically take up to three days. In our project Vibrigens - Accelerating Synbio, we established the tools to turn Vibrio natriegens into the next generation chassis for synthetic biology, ready to be used reliably. By taking advantage of its unbeaten doubling time of 7 minutes, we substantially reduced waiting time and made one-day-cloning a reality. We built and characterized a flexible golden-gate-based part collection, consisting of more than 100 parts, which enables the creation of complex pathways in a short amount of time. Our engineered V. natriegens strains VibriClone and VibriExpress are designed for cloning and protein expression applications, respectively. Moreover, we established the first synthetic metabolic pathway in this organism by producing the platform chemical 3-Hydroxypropionate and along the way developed an accelerated workflow for metabolic engineering.

McGill

Region: North America - Canada
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 4 - #226 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room310 - 9:30 AM - 10:00 AM

Synnotch and Tandem ScFv in Novel System Granting Multi-Specificity to Phagocytic Immune Cells in Cancer

The Notch family of proteins are kinetically activated cell surface receptors found in eukaryotes which can be modified to form synthetic notch (SynNotch) receptors. Our team has designed a gene construct activated by SynNotch to produce a downstream product of choice. Through the transfection of immune cells with our SynNotch system and tandem ScFV's antibodies specific for both SynNotch and a target of interest, one can target many different cancers with the same population of transfected cells. The system provides specificity to one population of cells through use of a single tandem ScFV, and multi-specificity through the use of multiple ScFV's. The downstream product is modular and can be switched to activate cytokine signaling, cytotoxic granule release, and other important cellular events. This system shows great promise as a flexible, cost-effective immunotherapy with the potential to treat a wide variety of cancers.

McMaster

Region: North America - Canada
Section: Undergraduate
Track: New Application
Poster: Zone 1 - #34 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room310 - 3:15 PM - 3:45 PM

Investigating Mechanisms of Amyloid-beta Aggregation in Alzheimer's Disease

Our proposed project seeks to investigate amyloid-beta aggregopathy in Alzheimer's disease (AD) through an E.coli model system. We will generate a mutant library of the Amyloid Beta 1-42 (Aβ1-42) gene, to be recombinantly expressed in E.coli as part of a drop-out screen. Given that Aβ1-42 spontaneously aggregates into toxic plaques, we expect the dropout cultures to become enriched over time for Aβ1-42 gene variants correlated with a reduced capacity for aggregation. We will use next generation sequencing data from our initial and resulting mutant sequences to develop a model to identify key regions of the Aβ1-42 sequence crucial to plaque formation. This can contribute to future research by revealing plaque-forming Aβ mutations.

McMasterA

Region: North America - Canada
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 5 - #269 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room310 - 4:15 PM - 4:45 PM

No title

No abstract

Melbourne

Region: Asia - Australia
Section: Undergraduate
Track: Therapeutics
Poster: Zone 5 - #304 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room311 - 2:45 PM - 3:15 PM

Glutamate Biosensor

Our proposed project is to create a glutamate biosensor. The proposed biosensor can be used to detect and give a fluorescent readout on the glutamate concentration level. The biosensor will be a circuit in Escherichia coli where fluorescent readout, via FRET, will correlate with the glutamate concentration. The signal will be detected using a calcium based fluorescent system. Our system uses a calcium channel that has a glutamate binding site which opens upon binding in our bacteria. Once the channel opens, the influx of calcium and the binding of calcium to our calmodulin-based fluorescent sensor. The calmodulin undergoes a conformational change into its active form, and will form a protein-protein interaction with M13 peptide, the calmodulin-binding domain of skeletal muscle myosin light chain kinase. On the ends of both protein will have an EGFP protein that will be in vicinity of each other to give a FRET signal.

METU HS Ankara

Region: Europe - Turkey
Section: High School
Track: High School
Poster: Zone 2 - #132 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room312 - 4:15 PM - 4:45 PM

The Combination of FucO and GSH Stimulates Bioethanol Production from Lignocellulosic Biomass

As energy resources get scarce, bioethanol production from lignocellulosic waste looks like a great alternative in terms of high energy yield and eco-friendliness. Due to their highly complex and rigid structure, lignocellulosic wastes need to be pretreated before they can be fermented. The process causes toxic byproducts such as furfural and 5-Hydroxymethylfurfural that inhibit the ethanol production and growth rate of bacteria, E. coli ethanologenic strain KO11. By integrating GSH and FucO genes into KO11 bacteria, we aim to enhance bioethanol production. Since furfural and HMF act as thiol-reactive electrophiles, cellular glutathione levels get depleted in their presence, leading to the accumulation of reactive oxygen species. Thus, overexpression of GSH increases cellular growth rates and lifespan. On the other hand, the expression of fucO results in the formation of NADH dependent furfural oxidoreductase which degrades furfural into furfuryl alcohol resulting in a higher rate of growth and ethanol fermentation.

Michigan

Region: North America - United States
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 1 - #11 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room208 - 9:30 AM - 10:00 AM

CRISPR Testing Model: Competitive Binding

The Cas9 enzyme has seen a rapid expansion of applications in the field of gene therapy. However, CRISPR's high frequency of off site targets can lead to undesired mutations, making it imperative that accuracy and efficiency be improved to be successful. Since modifications to minimize off-site targets are under development, it is important that there is a standardized model available on which these modifications and their binding patterns can be tested and compared. We designed a testing platform for comparing engineered Cas9 variants to the natural form through direct competition. Our model relies on competition between two Cas9s from Streptococcus pyogenes and Staphylococcus aureus as a proof of concept in an assay termed 'Guardian/Assassin'. This system can be used to expedite the design process of Cas9 systems and expand the Cas9 toolbox by allowing faster identification of efficiency within IGEM and throughout the scientific community.

MichiganState

Region: North America - United States
Section: Undergraduate
Track: Food & Nutrition
Poster: Zone 1 - #60 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room207 - 9:30 AM - 10:00 AM

No title

No abstract

Mingdao

Region: Asia - Taiwan
Section: High School
Track: High School
Poster: Zone 5 - #296 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room207 - 5:15 PM - 5:45 PM

Blood Pathogen Test for a Mosquito Bite

Bloodborne and mosquito-borne diseases are common among humans. They are caused by pathogens in the blood such as Escherichia coli, Staphylococcus aureus, dengue viruses, HIV, etc. To detect these pathogens in the human bodies is difficult in areas with lacking resources such as healthcare workers and lab equipment. What's more, patients infected with diseases like HIV may not be willing to let others to know. Therefore, a simple and self diagnostic device would greatly appeal to them. Team Mingdao is working on engineered mosquitoes to become a biosensor and blood drawer. We successfully demonstrated the experiment in the mosquito cells with the synthetic Toll signaling through antimicrobial peptide (AMP) reporter system to response the pathogens. Finally, to make this project to be usable in real life, we designed a portable mosquito cage as the size of a matchbox for use at home even without any professional instruction.

Minnesota

Region: North America - United States
Section: Undergraduate
Track: Environment
Poster: Zone 4 - #232 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room309 - 4:15 PM - 4:45 PM

Self-Sustaining Engineered Bacteria for Mercury Bioremediation with Auxotrophic Based Biocontainment System

We have engineered mercury(II) ion auxotrophy, which is sensitive to the mercury(II) ion concentration. Cell proliferation will remain normal with the presence of mercury(II) and the auxotrophic attribute by mercury(II) concentration, at which become nonviable. This is achieved by inserting an plasmid vector into an existing auxotroph E. coli (strain JW3841-1), which has its GlnA gene (Glutamine synthetase) knocked out, leads to its inability to synthesize glutamine and constrains the E. coli's proliferation. MerR is a mercury(II)-dependent transcriptional repressor-activator based on mercury(II) concentration. When mercury(II) is present, it activates the transcription of the mercury resistance protein complex and represses when absent. GlnA, MerR and MerA gene will be implanted into strain JW3841-1. MerR is activated by environmental mercury(II), glutamine synthetase will be produced for cell utilization. When the environmental mercury(II) is fully converted into mercury(0) by MerA (Reductase), the translation of glutamine synthetase will stop, which lead to bacterial death.

Missouri Rolla

Region: North America - United States
Section: Undergraduate
Track: Environment
Poster: Zone 5 - #270 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room312 - 10:00 AM - 10:30 AM

BTree

Since the year 2002, North American ash trees have been infected with and killed by an invasive beetle species known as Emerald Ash Borers (EAB). Current methods for prevention and treatment of EAB's are too expensive and time consuming for large scale eradication. Our proposed long term solution is to develop Ash trees that are genetically resistant to EAB's. From a known Bacillus thuringiensis Cry8Da protein, we hope to induce mutations in the protein's receptor binding regions to create a Bt toxin specific for EAB's. After screening modified proteins, we will utilize leaf-specific expression of the Cry Toxin in Arabidopsis thaliana as our model system for Ash trees. This method will target EAB's as they feed on ash leaves during adulthood. We hope to present this system for future development as a safe and effective alternative to current treatment methods used in affected areas.

MIT

Region: North America - United States
Section: Overgraduate
Track: Therapeutics
Poster: Zone 5 - #319 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room302 - 10:00 AM - 10:30 AM

Porting the ComCDE System of Streptococcus mutans into HEK Cells as a Potential Caries Treatment

Cariogenesis is facilitated by the growth of dense, adherent biofilm on the surface of teeth. This process is largely initiated by Streptococcus mutans through quorum sensing, a process by which S. mutans release Competence Stimulating Peptide (CSP) to activate a two-component signaling system (ComCDE) in neighboring cells, leading to critical bacterial mass formation on the tooth surface. Here, we engineer mammalian cells to sense CSP and biofilm formation by incorporating the ComCDE system into Human Embryonic Kidney (HEK) cells. In turn, our engineered HEK cells process the signal and actuate a response by secretion of kappa casein, a protein with known anti-biofilm activity. We envision these cells being administered through either an oral device worn overnight or as a cell therapy injected into patients' gums by dental professionals. Ultimately, our system will allow cells in the oral cavity to automatically detect and combat cariogenesis, preventing the onset of dental caries.

Montpellier

Region: Europe - France
Section: Overgraduate
Track: New Application
Poster: Zone 1 - #61 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room208 - 5:15 PM - 5:45 PM

Vagineering : A New Non Hormonal Contraception

Modern hormonal contraceptive methods have been revolutionary for women in developed countries; however, they still exhibit a variety of challenges. Developing countries lack consistent access, hormonal contraceptives can produce harmful environmental effects, and some women are unable use them due to health problems. The Vagineering project looks to solve these issues with a novel, non-hormonal method. Our team aims to engineer Lactobacillus jensenii, a bacterium from the vaginal flora, to produce two proteins to prevent unintentional pregnancy: antisperm antibodies that inhibit sperm motility and anti-microbial peptides (AMPs) that produce spermicidal effects. The goal is to create a lasting contraceptive using only bacteria, which can later be reversed by engineering the strain with a kill-switch. Additionally, our studies of this strain have produced a toolbox that will help other teams to further engineer this less-characterized bacterium.

Munich

Region: Europe - Germany
Section: Overgraduate
Track: Manufacturing
Poster: Zone 5 - #265 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room311 - 4:45 PM - 5:15 PM

Phactory

Antimicrobial resistance is a major emerging threat as reported by the WHO. Worldwide implementation of bacteriophage therapy, a 100-year old treatment employing the natural enemies of bacteria, is impeded by the lack of common manufacturing procedures which meet international quality and safety standards. Based on synthetic biology we created Phactory, a cell-free molecular assembly line for bacteriophages. We demonstrate expression of several phages including T7, MS2 and 3S at clinically relevant concentrations. Exploiting the open nature of cell-free systems, Phactory enables modular composition of bacteriophages with engineered proteins while remaining GMO-free. We developed a quality control structure utilizing state-of-the-art bioinformatics, as well as purification and encapsulation protocols. To expand our production variety while reducing cost, we optimized and engineered home-made E. Coli cell-extract. Compared to traditional manufacturing procedures, Phactory requires 2.5% of the production volume and demands no special biosafety regulations to yield bacteriophages ready for therapy.

Nanjing NFLS

Region: Asia - China
Section: High School
Track: High School
Poster: Zone 1 - #9 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room306 - 9:00 AM - 9:30 AM

A telomerase and CRISPR-based gene therapy of cancer

Telomerase is silent in most normal somatic cells while active in over 90% of cancers. Therefore, various telomerase activity inhibitors have been developed to treat cancers but all failed. In our project, we acted oppositely to develop a cancer gene therapy by utilizing the telomerase activity in cancer cells. We constructed a telomerase-activating gene expression system to induce cancer cell death. In this system, a vector ended with a telomerase-recognizable end can be elongated by telomerase, which will provide a telomeric repeat sequence that can be bound by a telomeric DNA-targeting dCas9-VP64-sgRNA. This binding will activate expression of an effector gene Cas9. The produced Cas9 protein can then be targeted to the telomeres of cancer cell chromosomes by a telomere-targeting sgRNA, which will produce the DNA damage and lead to cancer cell death. However, due to no telomerase activity, this system will not affect normal cells.

Nanjing-China

Region: Asia - China
Section: Undergraduate
Track: Energy
Poster: Zone 2 - #126 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room302 - 2:45 PM - 3:15 PM

Light-Driven Biohybrid Nitrogen Fixation Approach in E. coli Cells

Our team, Nanjing-China 2018, intends to establish a sound and ideal whole-cell photocatalytic nitrogen fixation system. We use the engineered E. coli cells to express nitrogenase and in-situ synthesize of CdS semiconductors in the biohybrid system. Instead of ATP-hydrolysis, such system is able to photocatalytic N2(nitrogen) to NH3(ammonia). The biohybrid system based on engineered E. coli cells with biosynthesis inorganic materials will likely become an alternative approach for the convenient utilization of solar energy.

NAU-CHINA

Region: Asia - China
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 4 - #215 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room306 - 2:15 PM - 2:45 PM

MOSFET

MOSFET (metal-oxide-semiconductor field-effect transistor) is an essential component in both analog and digital circuits such as analog switches and micro-processors. Inspired by this idea, we built genetic circuit 'MOSFETs' in animal T cells which is 'Monitoring and Operating System Founded on Engineered T cells'. The upstream of this genetic circuit uses synNotch to transduce extracellular signals into cells. The concentration of signals corresponds to different threshold values, and the system can respond accordingly under different concentrations. We achieved some level of logical effects by applying recombinase's reverse mechanism to ensure the uniqueness of downstream output. By using ODE and gillespie algorithms, we conducted validations on mathematical models. Using the concentration of cell surface antigen as gate signal, different recombinase and promoter to adjust threshold value, we conducted experiment validation to measure different promoters and recombinases' response to signals.

Navarra BG

Region: Europe - Spain
Section: High School
Track: High School
Poster: Zone 1 - #72 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room304 - 9:30 AM - 10:00 AM

BioGalaxy: a project to produce plant biofactories for an extra-terrestrial future

In this project we propose to develop a simple and cost-effective plant-based method for production and purification of recombinant proteins. The system is based on the production of plants transiently expressing a target protein (TP) fused to granule-bound starch synthase (GBSS). Tissues of GBSS:TP expressing plants will be milled in an aqueous buffer and the starch granules will be purified from plant tissue-derived impurities through a series of simple centrifugation and wash/elution steps allowing the starch granules to precipitate in a highly purified form. The GBSS:TP will be engineered to contain a unique cleavage site recognized by a specific protease, enabling the TP to be separated from the GBSS into the aqueous buffer, while the GBSS remains embedded the starch granule. Once treated with the protease, the starch granules will be removed by centrifugation while the highly purified cleaved TP can be further purified using conventional downstream processing.

NAWI Graz

Region: Europe - Austria
Section: Overgraduate
Track: Environment
Poster: Zone 5 - #293 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room310 - 4:45 PM - 5:15 PM

E. coLipid - The good kind of fat!

In the last decades, the palm oil industry increased on an extreme level and, because of great demand, it still does. The main products from the palm plant, palm oil and palm kernel oil, are not dispensable in today´s society. Because of their characteristic properties, they are widely used in food-, material-, beauty- and fuel industry. Palm kernel oil mainly consists out of saturated fatty acids, with Lauric acid (C12) as main component. This unique lipid pattern mainly differs from the palm oil itself. The aim of our project: We are working on a way to produce palm kernel oil using microorganisms, especially E.coli.The production of fatty acids and their esterification to triglycerides as energy storage is a natural process in all organisms. We make use of this natural way of synthesis by modifying the expression of fatty acids with appropriate carbohydrate chain length on a molecular level.

NCHU Taichung

Region: Asia - Taiwan
Section: Undergraduate
Track: New Application
Poster: Zone 1 - #59 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room207 - 9:00 AM - 9:30 AM

Engineered Endophyte-Assisted Phytoremediation

Endophyte can live inside the plants and work together with them without causing harm to the host plant. With the large and deep root system of plants, the endophyte can have further impact in soil. A serious case of soil contamination is dioxin pollution after the Vietnam War. Dioxin is a group of toxic compounds that accumulate in the environment and are difficult to break down naturally. Tackle with large area soil dioxin contamination is hard, since the most efficient way to clean up is burning, which is eco-unfriendly and costly. Our project combines phytoremediation and engineered endophyte to clean dioxin-contaminated soil. We engineered an endophyte with membrane transporter, dehalogenase and laccase to intake and break down dioxin, and created biobricks compatible shuttle vector that can express in a well-researched endophyte, Burkholderia phytofirmans. This platform can potentially apply to projects that related to or benefit from plant-microbe interaction.

NCKU Tainan

Region: Asia - Taiwan
Section: Undergraduate
Track: Environment
Poster: Zone 1 - #85 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room312 - 2:45 PM - 3:15 PM

One step closer towards a low carbon society

Ever since the 90s when concern over the impact of carbon emission on our environment was first raised, global-wide efforts in reducing emission have been met with mixed results. Just 2017 alone the global emission level grew by 1.4%. This year, the 2018 iGEM NCKU Tainan team will design a device capable of piping CO2 and convert it into biomass via integrating a non-native Calvin-Benson-Bassham cycle into E. coli using the RuBisCO and PRK genes from Synechococcus sp, which encode for major enzymes involved in carbon fixation. Industrial gases will enter a pipe (inlet) at the bottom of a bioreactor, flow through a ceramic nozzle and mix with E. coli-containing mixture which also consumes CO2. 'Of CO2urse' is an alternative to utilize excess CO2. Our ultimate goal is to convert CO2 into useful bioproducts. It would be one step closer towards a low carbon society.

NCTU Formosa

Region: Asia - Taiwan
Section: Undergraduate
Track: Environment
Poster: Zone 1 - #18 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room310 - 10:00 AM - 10:30 AM

Plan(t) B

Soil bacteria distribution is skewed by chemical fertilizers. These elements temporarily increase nutrients; however, they promote excessive growth of certain bacteria, such as phosphate solubilizing bacteria, damaging soil integrity. We developed a regulation system to manipulate soil microbiota, using bacteriocins as bio-stimulants to maintain nutrient levels while balancing bacterial ratios. First, we determine ideal levels of nitrogen, phosphorus and potassium for plant growth. After determining a volume of fertilizer, we use a nutrient-to-microbiota model that relates element levels to bacteria amounts to determine the distribution of bacteria after fertilization. We use our bacteriocin-effect-model to predict an ideal bacteriocin volume. A correlation model relates inhibition to changes in bacterial ratios. This system predicts the bacteriocin volume needed to prevent bacteria that thrive off chemical fertilizers from becoming too dominant. Our innovative system of regulating microbiotas using bio-stimulants is a long-term solution, balancing high productivity with environmental sustainability.

NDC-HighRiverAB

Region: North America - Canada
Section: High School
Track: High School
Poster: Zone 2 - #103 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room311 - 11:30 AM - 12:00 PM

Escherichia coli transformed with EstA gene breaks ester bonds between fatty acids and 4-nitrophenol

Through the use of an esterase gene, the engineered bacteria was constructed with the purpose of reducing the accumulation of solidified fat that holds non-biodegradable material together in sewer systems. With the use of DH5…ë Escherichia coli as the chassis, a plasmid was introduced containing a pLac promoter, and EstA gene. The EstA gene that is found in the Pseudomonas aeruginosa, was inserted in the plasmid with the intention of breaking apart ester bonds which connect the glycerol backbone to the fatty acid. To test the enzyme's effectiveness, 4-nitrophenol joined to a short chain fatty acid by an ester bond was introduced to the bacteria sample. Once this ester bond is severed, the 4-nitrophenol compound turns green. Preliminary results have shown that the bacteria expressing EstA is capable of breaking the ester bonds within 4-nitrophenol constructs. In the future, our team hopes to achieve the same result with triglycerides.

NEFU China

Region: Asia - China
Section: Undergraduate
Track: Information Processing
Poster: Zone 1 - #15 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room304 - 9:30 AM - 10:00 AM

Secured Message Transmission by Yeast: A multiple-level encrypted biosystem for information storage

In the modern world, most people recognize computers as device to store information, but deoxyribonucleic acid, or DNA can do better. However, living organisms can also provide a superior camouflage for secret messages. The aim of our project is to develop a yeast-based encrypted system to transmit information between two parties. We convert messages into DNA sequences using a designated program or code book and integrate them into yeast genome. To comprehend the message, the receiver needs to successfully pass through multiple levels of encryption, including cracking a promoter lock by a specific small RNA, reuniting dispersed DNA segments separated by introns, retrieving message nucleotides by a specific primer set and decoding DNA sequence into readable sentences by a unique program. Additionally, a build-in suicide system will prevent the engineered yeast from being extensively propagated.

NEU China A

Region: Asia - China
Section: Undergraduate
Track: Therapeutics
Poster: Zone 1 - #53 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room208 - 2:15 PM - 2:45 PM

Engineered bacteria alleviate the inflammatory bowel disease and prevent colorectal cancer

Nowadays, due to the popularity of fast food and unhealthy life style, the number of patients with inflammatory bowel disease (IBD) is rising in Asia. In addition, patients with IBD have an increased risk of developing colorectal cancer (CRC). Therefore, NEU_China_A aims to design a biological system against IBD and potential CRC this year. To relieve the intestinal inflammation, we empowered our bacteria with an anti-inflammatory device, which includes a sensor to detect the inflammatory signal, a highly efficient enhancer and an effector to secrete interleukin ten (IL-10). Furthermore, we engineered our bacteria with myrosinase to turn the glucosinolates, a natural component of cruciferous vegetables, to sulphoraphane. It's an organic molecule with well-known anti-cancer activity. Integrating cruciferous vegetable diet with synthetic biology, we envision that the engineered bacteria will greatly help us to overcome the severe situation in the IBD patient's gut.

NEU China B

Region: Asia - China
Section: Overgraduate
Track: Food & Nutrition
Poster: Zone 1 - #12 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room310 - 11:30 AM - 12:00 PM

Engineered E.coli L-Lactate Biosensor in food fermentation

The role of L-lactate is not always beneficial for the yogurt fermentation due to excessive L-lactate can provide an optimized growth condition for yeast and mold. Therefore, it is important to detect the concentration of L-lactate. Acid-base titration is a common method for it, but this method is complicated and time-consuming. In order to monitor L-lactate quickly and conveniently, we designed a biosensor for detecting L-lactate concentration by using the lldPRD L-lactate operon and QS system in E. coli. One of these parts is able to induce the lldPRD genes expression, LuxS protein, in the presence of L-lactate. LuxS protein catalyzes the SAM cycle and produces a small signaling molecule AI-2 that motivates our second part promoter of LsrA&K to promote GFP expression. The optic fiber is able to detect the GFP signal and convert it into current. Simultaneously, the entire device container will be made by 3D printing.

New York City

Region: North America - United States
Section: High School
Track: High School
Poster: Zone 1 - #5 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room304 - 9:00 AM - 9:30 AM

Testing the efficacy of mRNA displacement technique in huntingtin cell lines to treat Huntington's Disease

Huntington's Disease (HD) is an autosomal dominant disorder that leads to the progressive degeneration of neurons in the brain, which currently has no cure. HD is typically adult-onset and is characterized by a variety of symptoms including memory loss, involuntary movements, poor coordination, and impaired decision-making. Mutation in the huntingtin (HTT) gene causes HD, specifically a trinucleotide repeat of CAG that is abnormally repeated over 40 times. The goal of our project was to test the effectiveness of the plasmid that we generated last year, which targets and blocks endogenous faulty mRNA and releases a corrected RNA strand for proper protein synthesis of the HTT gene. The efficacy of this plasmid was tested on huntingtin cell lines, specifically the HeLa/polyQ-mCFP cell line. The effectiveness of this treatment was tested by evaluating whether the quantity of mutated HTT protein decreases after transfecting cells with the engineered plasmid.

Newcastle

Region: Europe - United Kingdom
Section: Overgraduate
Track: Environment
Poster: Zone 2 - #135 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room309 - 12:00 PM - 12:30 PM

Alternative Roots: Engineering Microbial Communities

The demand for food, fuel and materials is placing unprecedented pressure on agricultural production. To secure higher productivity, the sector relies upon synthetic fertilisers derived from energy intensive manufacturing methods. Here, we propose an alternative approach to support plant productivity. The Alternative Roots project investigated Pseudomonas fluorescens as a chassis organism. Development of a plant-colonising chassis provides novel mechanisms for soil microbiome manipulation without genetically modified crops. As proof of concept, we focus on improving nitrogen supply via naringenin biosynthesis - a potential chemoattractant of free-living, nitrogen-fixing bacteria. Legal and social considerations of the project drove the development of NH-1, a low-cost, small-scale and programmable hydroponic system. Tailored to overcome experimental limitations faced by many plant scientists, NH-1 provides improved reproducibility, coupled with high-throughput experimentation. This system enabled exploration of future deployment techniques within contained environments that may result in enhanced, sustainable crop productivity at a local and accessible level.

NJU-China

Region: Asia - China
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 2 - #94 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room310 - 4:15 PM - 4:45 PM

Surf in the neuron: A new strategy to target the dendrites

With cell-type specific targeting exosomes expressing a special peptide on the exosomal membrane, we could deliver biological molecules to the neuronal cells. By this method, the localization of molecular cargos in the recipient cells is random and even. However, some molecules are localized at sub-cellular compartment naturally, like in neurons, several mRNAs are transported to the dendrites or axons. How to specifically deliver an exogenous mRNA to the neurites remains to be solved. We tested two cis-acting RNA elements (the 5’-UTRs of Tick-borne encephalitis virus (TBEV) and the 3’-UTR of mouse β-Actin gene) to guide the mRNA. It turns out the shorter one, 5’-UTR of TBEV works better, and the 5’-UTR could be successfully applied to the AAV vector, carrying the mRNA into the neurites. Through our element, we could improve the targeting method to the sub-cellular level and provide new insights into future treatment of certain neuronal diseases.

NKU CHINA

Region: Asia - China
Section: Undergraduate
Track: New Application
Poster: Zone 3 - #184 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room310 - 11:00 AM - 11:30 AM

Population Quality Control system: a circuit for yield enhancement based on non-genetic variations

Biosynthesis enables renewable and environment-friendly production of various compounds. However, present biosynthetic performances still await improvements to be cost competitive with petroleum-based chemical synthesis and suitable for large-scale industrial production. In order to achieve this goal, many approaches have been created, among which the Population Quality Control ( PopQC ) system is proved efficient. In our project, a PopQC system was developed as a plasmid based gene circuit in Bacillus amyloliquefaciens LL3 to continuously select high-performing cells in order to improve the yield of target metabolite, glutamate. In the presence of our PopQC system, high-producers stayed alive while low-producers were unable to survive. Consequently, the average intracellular concentration as well as the yield of glutamate among the population was enhanced, which finally led to the yield enhancement of poly-γ-glutamate, a high-value-added secondary metabolite.

NorthernBC-Canada

Region: North America - Canada
Section: Undergraduate
Track: Therapeutics
Poster: Zone 5 - #291 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room302 - 9:30 AM - 10:00 AM

No title

No abstract

Northwestern

Region: North America - United States
Section: Undergraduate
Track: Environment
Poster: Zone 3 - #186 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room207 - 11:00 AM - 11:30 AM

MetaSense: A heavy metal biosensor optimized for cell-free expression

Water pollution has become a rising problem in Lake Michigan as more contaminants are accidentally or illegally dumped. However, very little is being done to raise citizen awareness or to combat the negative effects on the ecosystem. Thus, the goal of this project is to create a paper-based cell-free assay that detects whether chromium or lead is present in a given water supply. Cell free systems are ideal for heavy metal detection because they are field-deplorable, eliminate issues of biocontamination, and facilitate increased reaction control via the open reaction environment. For each metal, there are two plasmids; one that produces a repressor protein while the other constitutively produces GFP. With this combination, the repressor interferes with the production of GFP until the specified heavy metal is present, resulting in a fluorescent output. The benefit of creating an easy-to-use sensor is that it empowers everyday citizens to test their water quality.

Nottingham

Region: Europe - United Kingdom
Section: Undergraduate
Track: Therapeutics
Poster: Zone 4 - #222 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room306 - 10:00 AM - 10:30 AM

Clostridium dTox

Clostridium difficile infections are the primary cause of healthcare associated diarrhea, with hypervirulent outbreaks becoming increasingly common across the globe. It is predicted that $6.3 billion is spent annually on treating C. difficile in the U.S alone. Patients who have undergone treatment with broad spectrum antibiotics are at a high risk of being infected by this opportunistic pathogen, because their native gut flora is more likely to exist in a dysbiotic state. Our project aims to engineer a lysogenic bacteriophage with genetic constructs that will suppress the toxin production in C. difficile. We will use two different strategies to achieve this: an antisense RNA system capable of inhibiting translation of toxin transcripts, and a dead Cas9 mechanism to impede transcription of the toxin genes. Ultimately, we intend to produce a novel phage therapy capable of reducing toxigenicity of resident C. difficile without affecting native gastrointestinal microbiota.

NPU-China

Region: Asia - China
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 2 - #150 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room311 - 10:00 AM - 10:30 AM

Design and Synthesis of the Minimal Saccharomyces cerevisiae Mitochondrial Genome

Mitochondria harbor relatively independent genome, the uniqueness of which enables S.cerevisiae to be widely used in the study of mitochondrial loss and relevant diseases. The mitochondrial genome size varies prodigiously between different yeasts, positively correlated with the size of intergenic regions and introns. This year, we boldly try to design and synthesize a minimal S. cerevisiae mitochondrial genome from scratch (39k). We employed bioinformatics algorithms to analyze the function and conservation of various parts of the original mitochondrial genome, providing a criterion for determining the non-essential sequences that could be deleted. The complexity of the mitochondrial genome sequence, low GC content and the existence of local GC clusters make it difficult to synthesize the genome, which was solved by specialised separation, parameter optimization, etc. This genome will be transferred into S. cerevisiae cells that have lost mitochondria genome, verify their function, feed back the result and optimize our original design.

NTHU Formosa

Region: Asia - Taiwan
Section: Overgraduate
Track: Diagnostics
Poster: Zone 1 - #32 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room309 - 11:00 AM - 11:30 AM

BioWatcher_Autonomous cell reporter system for non-invasive real-time blood diagnosis

Countless biomarkers exist in our blood flow, which could be applied to diagnose health condition or even potential diseases. Ensuring the accuracy, common ways for soluble biomarkers detection are mostly invasive and not real-time. Hence, we proposed Biowatcher, engineered reporter cells that enable detection and autonomous report of soluble biomarkers in the bloodstream. The sensing parts of the reporter cells are powered by nanobodies, the single-domain antibody that can be engineered to detect different biomarkers. Binding of biomarkers on nanobodies triggers cleavages and releases of transcriptional activators. Activating the expression of lux gene, in turn, induces bioluminescent emission as a readout for devices to detect. This kind of autonomous reporting system can have great varieties of applications by installation on wearable devices, watch for example. With the required software, the wearable devices could noninvasively track the level of biomarkers for real-time diagnosis.

NTHU Taiwan

Region: Asia - Taiwan
Section: Undergraduate
Track: Open
Poster: Zone 1 - #13 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room207 - 2:15 PM - 2:45 PM

Equivibrium

The Vibrio-related infection of the aquatic animal leads to inestimable financial damage for aquaculture in Taiwan. Our goal is to design a regulatory system to replace the usage of antibiotics. Our engineered E. coli will detect AHL secreted by Vibrio and will trigger E. coli a to produce a peptide which can kill Vibrio. The killing genes are regulated by the STAR system, and we would like to let the system satisfy the succession model. Moreover, to verify our experiment, we design a bioreactor which is low-cost and is a real-time O.D. measuring device. It can track two engineered germs at the same time. Last but not least, because the current Vibrio detection methods are time-consuming, we aim to create a high-specificity Vibrio detecting device which collects the water sample automatically and periodically. And it would warn fisherman timely if the concentration beyond the standard value.

NTNU Trondheim

Region: Europe - Norway
Section: Overgraduate
Track: Therapeutics
Poster: Zone 1 - #17 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room207 - 5:15 PM - 5:45 PM

Quorum Sensing as a target mechanism for reducing biofilm formation

Bacterial biofilm formation is a profound challenge in treating wounds, inserting prostheses in patients or on equipment in different production industries. Communication between bacteria and coordination of biofilm formation is mediated by the quorum sensing mechanism. Here we utilize a CRISPR interference (CRISPRi) system to inhibit Escherichia coli’s quorum sensing mechanism by knocking down the luxS gene. The luxS gene encodes the synthase “S-ribosylhomocysteine lysae”, which is responsible for synthesis of the Autoinducer-2 (AI-2) quorum sensing molecule. We implemented the CRISPRi system in E. coli DH5α and TG1 and measured the biofilm production by Crystal Violet assays. We were able to significantly reduce TG1’s biofilm formation, while DH5α showed results with high variability. Experimental approaches for reducing biofilm formation have the potential to illuminate unknown underlying processes in biofilm formation and possibly reveal treatments for the challenges that biofilms account for.

NTU-Singapore

Region: Asia - Singapore
Section: Overgraduate
Track: Foundational Advance
Poster: Zone 1 - #6 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room306 - 3:15 PM - 3:45 PM

ModVision - A programmable nucleic acid modification and detection toolkit based on CRISPR/Cas systems

Recently, different CRISPR/Cas systems have been engineered to perform base editing on both DNA and RNA. However, some critical shortcomings are hampering their applications. For example, these base editors are often too large to fit into common delivery vehicles. Additionally, no approach is available to enable fast screening of specific RNA modifications. To tackle the size issue, we developed novel compact Cas9 protein scaffolds that, when fused to deaminase domains, will be both small enough to fit into delivery vehicles and only exhibit sufficient editing activity for downstream therapeutic applications. With our human practice, similar efforts were made on analogous RNA modifications using the Cas13 protein family. To tackle the second issue, we aimed to directly detect nucleotide modifications in the transcriptome using nanopore sequencing. We synthesised and sequenced unmodified and modified RNAs with the nanopore sequencer to develop different machine learning models that reliably identify positions of base modifications.

NU Kazakhstan

Region: Asia - Kazahkstan
Section: Undergraduate
Track: Environment
Poster: Zone 2 - #140 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room302 - 9:30 AM - 10:00 AM

From a Dangerous Waste to Functional Nanomaterials: Bioremediation of Sour Crude Oil Waste using Cyanobacteria

Accumulation of a hydrogen sulfide as a consequence of sulfur-containing 'sour' oil refinement can be dangerous. H2S damages the drilling equipment and causes corrosion of transporting pipelines. We use Cyanobacteria as a chassis since the organism is autotrophic. We designed a Synechococcus elongatus PCC 7942 that expresses Sulfide Quinone Reductase (SQR) that catalyzes sulfide-dependent plastoquinone reduction in anaerobic conditions, while photosystem II stays inhibited due to sulfide being present. SQR converts Sulfide to elemental Sulfur which is stored in the bacteria and accumulates in the Biomass. The electron flow in this modified Photosynthetic Electron Transport Chain goes to a transgenic Hydrogenase making use of the existing anoxygenic conditions due to sulfide presence. The Biomass is finally converted to functional materials used for Proton Exchange Membrane (PEM) fuel cells in accordance with a newly developed method in our laboratory.

NUDT CHINA

Region: Asia - China
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 2 - #114 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room311 - 10:00 AM - 10:30 AM

PR PREDATOR-An improved protein degradation method based on ectopic expression of TRIM21 and recombinant antibody

TRIM-AWAY, through introducing antibody and Trim21 protein into cells by microinjection or electroporation, represents a novel strategy which could rapidly remove unmodified native proteins in diverse cell types. However, the high complexity and low efficiency limited its application. Through combining TRIM-AWAY and ectopic expression of recombinant antibodies, we developed PR PREDATOR, a robust tool for degrading endogenous proteins in mammalian cells. Basically, parts for expression of Trim21 and recombinant antibodies were constructed and inserted in one single vector to realize the P2A-mediated bicistronic expression. GFP and ErbB-3, a member of the receptor tyrosine-protein kinases highly involved in the proliferation and metastasis of cancer cells, were chosen as targets of PR PREDATOR for the proof of concept and further demonstration of our design respectively. Our PR PREDATOR method shall provide not only novel tools for protein function study but also brand-new options for treating disease caused by aberrant protein aggregations.

NUS Singapore-A

Region: Asia - Singapore
Section: Undergraduate
Track: Manufacturing
Poster: Zone 2 - #119 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room208 - 11:30 AM - 12:00 PM

Eco-friendly Bio-manufacturing of Flavonoid Dyes in Escherichia coli via Computer-mediated Optogenetic Regulation

Natural dyes are increasingly considered as an eco-friendly solution to the serious water pollution generated by the textile and dye industries. Traditional production of natural dyes from plants heavily exhausts land and labour. While bio-manufacturing is an attractive alternative, it remains costly and chemically-intensive. We aim to develop a new bio-manufacturing method of producing flavonoids in E. coli for use as natural dyes. To eliminate the use of expensive chemical inducers to switch from growth to production phase and allow dynamic gene regulation, we designed an optogenetic circuit using a blue light repressible promoter for flavonoid biosynthesis. As it is critical to monitor cellular metabolic burden for efficient production, we introduced a stress-sensing fluorescence reporter. To optimize operations, a computer-aided system was developed to regulate gene expression using light according to the feedback from the stress sensor. To demonstrate this approach, we produced Luteolin, a natural yellow dye.

NUS Singapore-Sci

Region: Asia - Singapore
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 4 - #255 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room312 - 11:00 AM - 11:30 AM

RESCUE - RNA Editing System for C-to-U Editing

Since the discovery of the CRISPR-Cas9, researchers now have a tool for precise gene targeting in any living organism. However, there remain concerns about whether such DNA editing methods are ethical, specific and safe, especially if editing is carried out in somatic cells. Recent work has shown that another Cas family protein, Cas13, can target and degrade specific RNA transcripts, thus effectively silencing target gene expression. The targeting of RNA strands has many advantages over DNA, as any changes are not permanent and its effect is transient. Our project aims to extend the application of CRISPR-Cas13 guided RNA targeting system for editing specific RNA bases on RNA strand (RESCUE system). Cas13 is linked to the catalytic domain of APOBEC1, an enzyme that can carry out RNA base modification. Our RESCUE system can diversify the current repertoire of RNA editing methods available.

NWU-China

Region: Asia - China
Section: Undergraduate
Track: Environment
Poster: Zone 2 - #100 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room310 - 5:15 PM - 5:45 PM

No title

No abstract

NYMU-Taipei

Region: Asia - Taiwan
Section: Undergraduate
Track: New Application
Poster: Zone 2 - #98 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room312 - 2:45 PM - 3:15 PM

Hair to Stay - a Drug Screening System for Androgenetic Alopecia (AGA)

Hair is one of the first noticeable aspects of our beauty and it reflects our identity. This year, the NYMU iGEM team aims to introduce a quick and convenient drug-screening platform to determine the effectiveness of hair loss product without animal or human testing. The cause of AGA is believed to be highly related to dihydrotestosterone (DHT), a derivative of testosterone that can possibly trigger the production of DKK-1 protein. DKK-1 protein can possibly inhibit the growth of root sheath cells in hair follicles and eventually lead to hair loss. The system that our team designed demonstrates a convenient platform to measure the amount of secreted DKK-1 protein, which provides a novel method for the screening of AGA drugs.

NYU Abu Dhabi

Region: Asia - United Arab Emirates
Section: Undergraduate
Track: Diagnostics
Poster: Zone 5 - #308 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room304 - 5:15 PM - 5:45 PM

Pathogene: A portable, low-cost, microfluidic lab-on-a-chip based device for rapid detection of multiple foodborne pathogens

Despite regulations in place to ensure the distribution of safe food, foodborne diseases (FBDs) remain a global concern. To address the worldwide challenge of FBDs, we have devised a customizable device for the simultaneous detection of multiple food-borne pathogens (FBPs). The device detects specific DNA sequences associated with four FBPs: Campylobacter, Listeria monocytogenes, Salmonella, and Vibrio cholerae using the isothermal amplification techniques: recombinase polymerase amplification (RPA) and loop-mediated isothermal amplification (LAMP). The use of isothermal techniques allows the device to be more portable and cost-effective compared to conventional PCR systems, while the use of microfluidics allows for multiplexing and rapid high-throughput screening. The parameters of the device such as the number of pathogens, and amplification and detection methods can be customized as required. This novel lab-on-a-chip based device is rapid, portable, affordable, sensitive, specific, and customizable, making it ideal for resource-limited settings and point-of-care testing.

OLS Canmore Canada

Region: North America - Canada
Section: High School
Track: High School
Poster: Zone 4 - #218 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room306 - 11:00 AM - 11:30 AM

The PET Peeve Project: Bio-tagging PET Plastic for Efficient Sorting and Recycling

The accumulation of plastic pollution has spurred a global crisis. Looking for a solution, the OLS SynBio team discovered that the issue is not the recycling of plastic, but instead the inefficient sorting of plastics. The project uses synthetic biology to create a novel fusion protein that can specifically bio-tag polyethylene terephthalate (PET) plastic, so it can be sorted and recycled correctly. The project involves two proteins, PET hydrolase (PETase) and a hydrophobin called BsIA, that are produced via a bacterial chassis called Bacillus subtilis. The PETase enzyme binds to PET and is fused to a red fluorescent protein called mCherry, visually indicating when the adhesion occurs. The hydrophobin is 'water-fearing' and will help to bind the PETase to PET plastic. So far, transformations of Bacillus subtilis using the construct have been successful, and real-world applications of the project look promising.

OUC-China

Region: Asia - China
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 1 - #86 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room311 - 12:00 PM - 12:30 PM

miniToe Family- A Controllable Toolkit Based on Csy4

This year, we design a toolkit focused on post-transcriptional regulation, which is composed of a RNA endoribonuclease (Csy4) and a RNA module named miniToe. Csy4 (Csy6f), a member of CRISPR family, recognizes a specific 22nt hairpin. The RNA module was constructed by inserting the 22nt Csy4 recognition site between a RBS and cis-repressive RNA element, which can be specifically cleaved upon Csy4 expression, so the RBS is usually masked. Cleaved at the specific recognition site, it can release the masked RBS, thus endowing the programming of gene expression in the translation level with higher feasibility. We want to use one system to achieve diverse expression of target gene. So we further design four Csy4 mutants and five miniToe mutants. The whole system including five Csy4s and six miniToes is called miniToe family. By combining each Csy4 and hairpin, we can achieve different expression level of the target proteins in a polycistron.

Oxford

Region: Europe - United Kingdom
Section: Undergraduate
Track: Therapeutics
Poster: Zone 5 - #312 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room302 - 12:00 PM - 12:30 PM

miBiome: Treatment of IBD with Genetically Engineered Probiotics

Inflammatory Bowel Disease (IBD) is characterised by chronic inflammation of the intestine. The condition is associated with an imbalance in immune cell populations, notably Th17 and Treg. Existing immunosuppressive therapies, when successful, often elicit systemic side effects and require frequent readministration. Our solution is to develop a probiotic strain that restores the Th17/Treg cell balance via secretion of IL-10 in response to nitric oxide in the intestinal lumen. Overshoot is prevented by an adenine riboswitch-sRNA construct which responds to extracellular adenosine, an indicator of the Treg cell population. Integration of separate stimuli in a dual feedback loop enables a more dynamic, robust response to the immune state of the body. Various features have been incorporated to maximise biological safety, including an inducible kill switch system. We believe our design offers a non-invasive, self-tuning therapeutic for IBD, with potential to replace conventional immunosuppressants in the treatment of gastrointestinal autoimmune disorders.

Paris Bettencourt

Region: Europe - France
Section: Overgraduate
Track: Therapeutics
Poster: Zone 1 - #19 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room306 - 5:15 PM - 5:45 PM

STAR CORES: Protein scaffolds for star-shaped antimicrobial peptides

Antibiotic overuse in livestock industry is one of the major drivers to the antibiotic resistance evolution; motivating calls to reduce, replace, and re-think the antibiotic usage in animals. Antimicrobial peptides (AMPs) are a promising alternative to conventional antibiotics. Recently, a class of chemically-synthesized, star-shaped AMPs has been shown to exhibit broad-spectrum antimicrobial activity while maintaining biocompatibility with mammalian cells. In this project, we combinatorially fused a set of known AMPs to structurally diverse, self-assembling protein cores to produce star-shaped complexes. Over 200 fusions were designed and expressed in a cell-free system, then screened for activity, biocompatibility, and membrane selectivity. In addition, we selected 4 AMPs for rational mutagenesis (~12000 variants), and a subset of fusions for molecular dynamic modeling, to identify features of surface charge and star geometry that impact AMP performance. Overall, we aim to create a novel class of selective, non-toxic AMPs which are biologically-produced.

Pasteur Paris

Region: Europe - France
Section: Overgraduate
Track: New Application
Poster: Zone 2 - #167 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room311 - 2:15 PM - 2:45 PM

NeuronArch: the novel connecting and protecting biofilm based system for prostheses

In the future, a long due consideration and an easier access to healthcare will be given to people with disabilities. Presently, some prostheses allow amputees to perform simple actions but without a direct connection between the nerves and the prosthesis. Furthermore, a major health risk is the development of pathogenic communities of microorganisms in structures called biofilms. Strong treatments with antibiotics, or even surgical reinterventions are then required. They represent a heavy burden for both the patient and the healthcare system. We imagined NeuronArch as a novel application that subverts potential pathogenic biofilms using an engineered one. This interface produces substances called neurotrophins (NGF), for directed and controlled growth of nerves. Using a conductive membrane, it will also allow passing of information and enhancement of the electrical properties. Altogether, these improvements would enable patients to regain natural perceptions and prevent the formation of Staphylococcus aureus biofilms by blocking quorum sensing.

Peking

Region: Asia - China
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 2 - #144 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room304 - 9:30 AM - 10:00 AM

Synthetic organelle: A phase-separation-based multifunctional toolbox

Membrane-less organelles are involved in many essential biological processes. In order to orchestrate various cellular regulation using a single platform and to make the response dynamics more flexible, we put forward the idea to construct a 'synthetic membrane-less organelle' as a multifunctional toolbox in yeast. In this case, certain components are self-organized to form liquid droplets through phase separation, which require multivalence and interaction as prerequisites. Based on this principle, we fused interactional modules into homo-oligometric tags (HOTags) to form droplets in the yeast. Various interactional modules provide diverse control methods while different promoters alter the features and kinetics of our systems. Beyond quantitative analysis of the foundational system, we verified the feasibility of several potential functions theoretically and experimentally, including reaction crucible, sequestration, organization hub, sensor, etc. In the future, by replacing functional modules with other parts, this system would conduct functions not included in the current project.

Pittsburgh

Region: North America - United States
Section: Undergraduate
Track: Information Processing
Poster: Zone 4 - #227 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room306 - 9:00 AM - 9:30 AM

Chronological Event Recording of Stimuli using CRISPR/Cas9-mediated Base Editing‚Ä®

The ability to measure and record molecular signals in a cell is critical. Current systems are limited in that they can only take a 'snapshot' of the environment, preventing scientists from understanding event order. Previously systems have utilized a CRISPR/Cas9 base editor complex (BE), which can record information in DNA by producing permanent single nucleotide changes; however, recording capability was limited to logging an average concentration of stimuli over a period of time. Our system builds upon these foundations by designing a method of true chronological event recording. By introducing recording plasmids with repeating units of DNA and multiple gRNA to direct our base editor construct, we can achieve true temporal resolution of stimuli. Furthermore, we simplified the readout, so inexpensive laboratory equipment can be used. This technique will provide an understanding of the order in which molecules and proteins appear in systems, illuminating the hidden, casual relationships.

Pittsburgh CSL

Region: North America - United States
Section: High School
Track: High School
Poster: Zone 1 - #76 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room306 - 11:30 AM - 12:00 PM

Energy on Demand from Symbiotic Microbial Fuel Cells

The burning of fossil fuels generates greenhouse gases that damage the atmosphere and impacts the global environment. Energy from sustainable sources such as wind and solar is difficult to store for times when no wind is blowing or no sun is shining. The purpose of this project is to show a possible symbiotic relationship between Shewanella oneidensis and E.coli to generate energy. This allows the use of energy in a eco friendly way. In order to build a sustainable energy source for energy on demand we created a system using living organisms. E.coli was engineered to synthesize lactate which will then be used to feed a Shewanella biofilm. Shewanella oneidensis is a bacterium notable for its ability to reduce metal ions, live in environments with or without oxygen and when incorporated into a microbial fuel cell produced voltage. Results of co-culture experiments to test the symbiotic relationship will be presented.

Purdue

Region: North America - United States
Section: Undergraduate
Track: Diagnostics
Poster: Zone 5 - #318 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room309 - 2:45 PM - 3:15 PM

A Novel Paper-Based Diagnostic Assay For The Detection of Candida Albicans

The common yeast infection, vulvovaginal candidiasis, affects 75% of women throughout their lifetime. This disease is caused by the fungal pathogen Candida albicans, which is also a major cause of systemic candidiasis, a rarer but deadly disease with up to a 49% lethality rate. Existing diagnostics for both infection types are lacking in accessibility, speed, or accuracy – far from the ideal test. This project focuses on creating such a test by detecting farnesol and tyrosol, biomarkers indicative of C. albicans, by binding them to the split proteins pqsR and tyrosinase. Upon binding, a split horseradish peroxidase catalyzes and produces a blue color on a paper test strip by oxidizing the substrate tetramethylbenzidine. This test will produce a colorimetric output for a simple-to-understand diagnosis without any infrastructure. It also may provide an easy and cheap way to diagnose candidiasis worldwide, reducing antifungal abuse.

Queens Canada

Region: North America - Canada
Section: Undergraduate
Track: Diagnostics
Poster: Zone 5 - #282 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room309 - 12:00 PM - 12:30 PM

In The Glow: Luminescent Biosensors for Hormone Detection and Diagnosis

This year's project has focused on the production of protein biosensors for detection, diagnosis, and monitoring of salivary hormones. We have taken two approaches to our design process. Firstly, we constructed a reagent-less, and continuous glucocorticoid sensor which utilizes changes in Fluorescence Resonance Energy Transfer to detect hormones. Secondly, we have begun developing a novel, and easy to use biosensor which utilizes ligand-dependent intein splicing to produce a luminescent signal. The resulting signal could then be quantified, providing a dose-dependent measurement of analytes. In addition to our laboratory work, we have constructed a complimentary diagnostic pacifier featuring a built in luminometer, allowing for the potential to passively collect, and analyze saliva in a portable and non-invasive fashion. In practice, a child would use the pacifier as normal, and the baby's salivary hormones would be collected, analyzed, and wirelessly transmitted to the parent or a healthcare professional through a smartphone application.

RDFZ-China

Region: Asia - China
Section: High School
Track: High School
Poster: Zone 3 - #201 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room302 - 12:00 PM - 12:30 PM

Xscape

Biosafety has always been a major challenge. Leakage of recombinant DNA to the environment may cause undesirable environmental consequences. Aiming to solve this urgent issue, we constructed three devices: two for industrial fermentors, and one for drug delivery bacteria. The first device for use in fermentors utilized thermal-sensitive and quorum system sensors, PhlF and sRNA as logic gate components, and DNase as actuator, forming a NOR gate; the second used a cold-regulated device and a LuxR-repressed promoter as sensors, forming an AND gate. Both devices will self-induce DNA degradation if recombinant bacteria are accidentally leaked into environment. Moreover, with multiple thermal-sensitive devices and gas vesicles, we could perform noninvasive monitoring of the bacteria, drug release by heating tissue at the nidus, and initiation of DNA degradation by applying a higher temperature. For human practice, we mainly focused on current biosafety issues, including biohackers, sales of hazardous materials and local laws.

REC-CHENNAI

Region: Asia - India
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 5 - #295 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room311 - 11:30 AM - 12:00 PM

FLUOROSCREEN

With the ever-growing demand for designing proteins with better sensitivity, selectivity, stability, and affinity, oligo-based site-directed mutagenesis has become instrumental and indispensable in Genetic Engineering. The conventional method is considered cumbersome, for it relies on replica-plating to screen the mutants based on the reversal in resistance and sensitivity to two antibiotics: Tetracycline and Ampicillin respectively. It also necessitates sub-cloning the mutated gene in an expression vector to ultimately express the mutant-protein. Our orthogonal system facilitates fluorescence-based screening of mutants, using a novel 'Red-Green' Dual-Fluorescent GFP-mutant. While point-mutating the gene-of-interest, introducing a single point-mutation in the coding sequence of this GFP-mutant codes for its 'Green-Only' isoform. The loss of red fluorescence in the transformed colonies is indicative of successful mutagenesis. Apart from simplifying the screening method, this system facilitates the mutagenesis of the target-gene and expression of the mutated-gene using a single plasmid, thus eliminating the need for sub-cloning.

Rheda Bielefeld

Region: Europe - Germany
Section: High School
Track: High School
Poster: Zone 3 - #196 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room208 - 5:15 PM - 5:45 PM

Interpoll-Scanning the air for pollen

A great percentage of Earth's population is allergic to specific substances. Approximately 20 million people living in Germany are allergic to different plants, animals and much more, but about half of them are allergic to pollen. We want to help these people suffering from an allergy to pollen by advising them which dose of medicine is necessary for every day. Although there is already useful medicine, we are convinced that we can optimize the use of such medicine and reduce the exposure to unnecessary drugs which have negative side effects like lowering the personal performance capacity, becoming tired and many others. Therefore we use a DNA-based method using pectinase and cellulase to open the pollen and isolates their DNA. This DNA will be used for a PCR with specific primers against the birch allergen 'Bet'. By hereby identifying pollen we aim to measure the current pollen exposure in the air.

RHIT

Region: North America - United States
Section: Undergraduate
Track: Environment
Poster: Zone 4 - #231 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room309 - 4:45 PM - 5:15 PM

PEBBLE - Modifying Escherichia coli to Degrade and Metabolize Polyethylene Terephthalate Plastic into Usable Products

A recently discovered bacteria, Ideonella sakaiensis, degrades polyethylene terephthalate (PET) plastic into ethylene glycol and terephthalic acid using the enzymes PETase and MHETase. As genetic engineering methods have not been well-developed for this organism, we are engineering this pathway into Escherichia coli, a model organism. Other researchers have mutated PETase's active site to increase its substrate turnover. We are cloning the DNA sequences of these mutated enzymes into an E. coli plasmid and developing a second plasmid to overexpress the native E.coli enzymes for ethylene glycol metabolism. With both plasmids, the transformed bacteria should be able to survive solely off the PET carbon. The only byproduct would be terephthalic acid, a precipitate which can be recycled into new plastic. Computer simulations of the pathway gave us predictive degradation rates at optimum conditions. Implementation of these bacteria in the future could address the concern of plastic build-up in our world.

Rice

Region: North America - United States
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 1 - #30 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room208 - 11:30 AM - 12:00 PM

PORTAL: A Portable Transcription-Translation System to Improve Cross-Species Genetic Circuit Reliability

The unique properties of non-model bacteria can expand the applications of synthetic biology. However, currently there are few reliable tools for engineering non-model bacteria. A central obstacle to the development of such tools is the dependence of circuit expression on host machinery. To address this problem, we developed PORTAL, a system which uses T7 transcription and orthogonal ribosomes to insulate the circuit from host processes. We characterized PORTAL in four E. coli strains, Shewanella oneidensis, and Pseudomonas putida, comparing PORTAL-driven and host-driven expression of a reporter. To design orthogonal ribosomes, we created software that analyzes binding energies of 16S rRNA and determines the optimal orthogonality-promoting anti-Shine-Dalgarno mutations. We created a model that simulates the performance of PORTAL and shows that the system is minimally sensitive to metabolic differences. PORTAL presents a tunable 'virtual machine' to facilitate insulated synthetic gene circuit expression in non-model bacteria.

RMHS Maryland

Region: North America - United States
Section: High School
Track: High School
Poster: Zone 3 - #197 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room306 - 4:45 PM - 5:15 PM

Conversensations: Developing a Two-Way Quorum-Sensing Feedback Loop and Characterizing Dose-Dependent Sensitivity to Realistic Autoinducer Concentrations

Quorum sensing, a form of bacterial cell-to-cell communication reflecting cell population fluctuations, can be adapted to facilitate multi-population collaboration. Our project combines two different QS systems to create a novel feedback loop in an E.coli co-culture, where each population synthesizes a different fluorescent protein in response to the other population's autoinducer production. Population A is a LuxS knockout that produces AI-1 and RFP in response to AI-2, while Population B secretes a constant level of AI-2 and expresses GFP in response to AI-1. In co-culture, each population induced fluorescence in the other, indicating a successful two-way quorum sensing system. In the process, we also generated novel characterization data for two Biobricks, demonstrating for the first time that BBa_K575024 exhibits minimal leaky expression and is dose-dependent over a range of realistic AI-1 concentrations (5-1000 nM). We also provide the first evidence that BBa_K575026 is induced by AI-1.

Rotterdam HR

Region: Europe - Netherlands
Section: Overgraduate
Track: Open
Poster: Zone 1 - #33 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room312 - 2:45 PM - 3:15 PM

Selective carbon monoxide detection using the CO binding receptor protein CooA in E. coli.

Modified bacteria that are present in our product contain the CooA receptor gene which codes for the synthesis of a receptor protein named CooA. This CooA receptor can bind with the carbon monoxide derived from the polluted environment. The binding of the CooA receptor with carbon monoxide results in a change of the protein structure. Due to the changed structure, the CooA protein will be able to bind to a CooA sensitive promoter on the bacterial DNA. The binding of the CooA receptor with the promoter enables the synthesis of the enzyme urease. Accordingly, the formed urease converts the urea which is present in the medium into CO2. The released CO2 gas in the medium will be collected. When a certain threshold is reached in the amount of produced gas an increase in the resistance between two electrodes will occur. Finally, the detected change in resistance will activate the alarm.

Ruia-Mumbai

Region: Asia - India
Section: Undergraduate
Track: Environment
Poster: Zone 2 - #107 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room208 - 2:15 PM - 2:45 PM

Catechewing Coli: The Paan Stain Redemption

Indiscriminate spitting of red-colored catechu (Paan-) based products is a common practice in India. Paan stains tarnish public places and historical monuments in the country. Although a considerable amount of resources are invested in cleaning these stubborn red-stains, existing methods are ineffective in removing them. Our team designed a dual-component ecologically contained system that will remove these stains more efficiently. The first module employs a four-enzyme system that breaks down the stains into non-toxic byproducts in a targeted manner. The second module interfaces with this degradation system to trigger the destruction of the system's DNA from the environment as a safety measure after the stain-fighting enzymes have been produced. Given the enormity of this social issue, we take a holistic approach to actively engage our community and learn from industry experts, users, cleaners, and policy makers how to effectively remove existing stains as well as prevent new ones.

Saint Joseph

Region: Europe - Turkey
Section: High School
Track: High School
Poster: Zone 5 - #294 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room302 - 3:15 PM - 3:45 PM

RAFI - Revolutionary Approach To Fish Infections

For years, fish industry has been one of the most important economic resources. However , humans were not the only ones consuming this resource; some aquatic bacteria such as Vibrio anguillarum and many other bacteria species have evolved to prey on fish. This has caused huge economic losses in various countries' fish industries. Humans responded to this problem by applying antibiotics, to which bacteria easily developed resistance. Another solution applied was vaccinations but they were ineffective for fish larvae .That's why we need to find an effective solution that can adapt to its ever changing environment. For this we aim to use bacteriophages as a specialized lytic agent to eliminate fish pathogen. Due to resistant nature of bacteria we will support our bacteriophages with an antimicrobial peptide in a recombinant therapy where we will observe any potential synergy against Vibrio anguillarum'. We will execute our experiments in in-vitro environments .

SBS SH 112144

Region: Asia - China
Section: High School
Track: High School
Poster: Zone 3 - #203 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room304 - 2:15 PM - 2:45 PM

The lysis of Cyanobacteria in freshwater ecosystem using Cyanophage lysozyme and its commercial implications

The rampant growth of cyanobacteria in freshwater ecosystem has become more than an environmental issue. Their incredible ability to multiply and voracious consumption of oxygen often make them a disturbing factor to natural systems. Although effective ways to gather and salvage cyanobacteria have been developed, there are barely any success in decomposing these bacteria. Through background research, our team identified a cyanophage lysozyme, cp-OS lysozyme 1. Alone with other chemicals such as BugBuster, this lysozyme in small reaction systems could lyse the cyanobacteria effectively. Through molecular cloning, protein expression, and the subsequent purification, we were able to acquire the recombinant protein from E. coli cells, and we evaluated its enzymatic activity under different pH and temperatures. We also designed a prototype device in which immobilized lysozyme can be used to lyse cyanobacteria repeatedly. Our research lays foundation for the utilization of cyanobacteria components in agricultural, bioenergetic, and even medical fields.

SCAU-China

Region: Asia - China
Section: Undergraduate
Track: New Application
Poster: Zone 5 - #288 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room311 - 3:15 PM - 3:45 PM

Desertification combating strategy: bacterial cellulose biosynthesis in desert surviving cyanobacteria

Desertification is becoming a serious global problem. Great efforts have been put into the desertification control by introducing various methods. Here, we take advantage of using genetic engineering and synthetic biology as powerful tools to propose a new strategy for the densification control. We use Acetobacter xylinus which is a model bacterium for producing cellulose. Its cellulose can be used for water conserving both soil and moisture. On the other hand, Microcolus vaginatus is a dry land living cyanobacteria which is an ideal bioreactor for producing bacterial cellulose. We cloned seven key genes that are critically required for bacterial cellulose synthesis from Acetobacter xylinus and expressed them in cyanobacteria. Additionally, we employed computer modeling and prediction to optimized the production of cellulose. Finally, we successfully achieved the cellulose production from the transgenic cyanobacteria and its cultivation on sands. Together, we have developed a new and low-cost method for desertification control.

SCU-China

Region: Asia - China
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 4 - #256 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room208 - 11:00 AM - 11:30 AM

CRISProgrammer

Inspired by the modularization, call-and-return and do-not-reinvent-the-wheel philosophy in computer programming, we came up with the idea of using the dCas9 to manipulate the expression of proteins and to implement complex logic in E. coli. Ideally, we would like to generate a versatile 'Library strain' containing the CDS of commonly used proteins. Individuals would simply transform a much smaller 'Minimid' which contains specific sgRNAs targeting the sequence of desired proteins into the Library strain, then the dCas9-sgRNA complex can control the expression. To show the practicality of the design, we tested the system in E. coli by using a series of simple logic circuits based on dCas9-sgRNA complex, with fluorescent proteins as reporters. We also thought about the further application of our design in the synthesis of indigo and try to modularize two enzymes that participated. This project will contribute to the construction of engineered bacteria and green manufacturing.

SCUT ChinaB

Region: Asia - China
Section: Undergraduate
Track: Environment
Poster: Zone 5 - #290 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room207 - 11:30 AM - 12:00 PM

Plastic Killer - Engineered corynebacterium glutamicum that degrade plastics

In recent years, the problem of plastic pollution has attracted more and more attention because of its huge amount and ubiquity. Meanwhile, traditional PET treatment methods have problems such as high cost, insufficient degradation, and secondary pollution. Therefore, we have constructed an engineering strain that can degrade PET and convert it into a carbon source. We are going to use Corynebacterium glutamicum in our project which is a food-grade microorganism that is commonly used in the industrial production of foods and amino acids. Our bacteria will firstly degrade PET to p-Phthalic acid(TPA) and Ethylene glycol(EG). Secondly, they will catalyze the TPA to protocatechuatePCA and finally to PDC, which can participate in TCA cycle to provide energy for cell growth and development. All in all, our engineered bacteria have the advantage of effectively degrading PET at a lower cost without secondary pollution.

SCUT-ChinaA

Region: Asia - China
Section: Undergraduate
Track: Environment
Poster: Zone 2 - #110 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room312 - 2:15 PM - 2:45 PM

Enhancing limonene biosynthesis by a high efficiency enzyme self-assembly system

Terpenoid flavor and fragrance compounds (TFFCs) show extensive application in nutraceutical, pharmaceutical and food industries that have rapid grow market demands. The use of GRAS microorganisms to convert natural raw materials into aroma compounds can be described as natural products, which have been considered as one of the most promising strategies. However, fermentive TFFCs produced by engineered microbes mostly only obtain intermediates or low yields of end-product currently. This study proposes a non-conditional yeast Yarrowia lipolytica as a chassis for TFFCs production, in which limonene was chose as target product. By employing synthetic biology technology including gibson assembly, CRISPR/Cas9 and protein scaffold, we develop a high-performance enzyme self-assembling system (HESS) to rewiring the pathway into limonene accumulation. Furthermore, the MVA pathway will be enhanced by overexpression of two rate-limiting enzymes (HMG1 and ERG12) for increasing the production. This project will provide an alternative metabolic engineering strategy for biosynthesis of TFFCs.

SDSZ China

Region: Asia - China
Section: High School
Track: High School
Poster: Zone 2 - #127 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room306 - 12:00 PM - 12:30 PM

Advanced enzymolysis technique for chitosan production

Chitin is a kind of natural macromolecular substance that can be found abundant in the exoskeleton of arthropods. It could be converted to chitosan, -1, 4- polymer of 2-glucosamine, through deacetylation. Chitosan is significantly soluble and bioactive, widely used in medicine, food industry, and water treatment. However, the current technology that treats chitin with concentrated alkali has led to deficient, unstable chitosan production, and pollution. After learning that Chitin Deacetylase (CDA) could hydrolyze the acetamino group on chitin, we aimed to find out a crystal- chitin-active-enzymes due to the only industrial-available source of chitin. In our research, we chose several CDA and chitinase sequences, synthesized and complemented them with respective domains, and cultivated them in plasmid pET-28a. After inserting plasmids into competent cells and searching for optimal induction condition for expression, we would finally find out maximum viability and model the research for factory production.

SDU-CHINA

Region: Asia - China
Section: Undergraduate
Track: New Application
Poster: Zone 5 - #275 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room207 - 9:30 AM - 10:00 AM

MetaboLight: Light-controlled Redirection of Metabolic Flux

In engineering Escherichia coli cell factories, conflicts exist between engineered and endogenous pathways for their competition for metabolite precursors. E.g., the production of polyhydroxybutyrate (PHB) inevitably consumes Acetyl-CoA in the TCA cycle for cell growth. Given cell mass is a key factor of yield, precise switching from growth phase to production phase is significant. Previous studies utilized chemical inducers which are subject to irreversibility & toxic effects. In this project, we addressed these problems by introducing light in E. coli transcriptional control. A switch redirecting metabolic flux from growth to PHB production was built using a green light responsive CcaS/CcaR two-component system and a Type I-E CRISPR-Cas System. Upon green light illumination, the gene cluster phbCAD is transcribed to initiate PHB synthesis. A crRNA is transcribed simultaneously and binds a deactivated cas3 (mimicking dcas9) to block the expression of gltA, an essential gene in TCA cycle and cell growth.

SFLS Shenzhen

Region: Asia - China
Section: High School
Track: High School
Poster: Zone 5 - #298 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room312 - 4:45 PM - 5:15 PM

Early detection of breast cancer using miRNA-155 and miRNA-10b

The global incidence of breast cancer has been rising since the late 1970s. According to the data of breast cancer incidence released by the National Cancer Center and the Center for Disease Control in 2009 , the incidence of breast cancer in the registered areas ranks the first in women with malignant tumor. Our project is to use miRNA--miRNA155 and miRNA10b--in human serum as biomarkers to detect early forms of breast cancer. Toehold switches are used for the detection and the product can be suited to any other early cancer detections if the trigger part is changed to bind with other miRNA sequences. When both kinds of miRNAs are binded,our artificial designed biological system will produce green fluorescent protein.Based on it,we can detect fluorescence and calculate microRNA expression level.We're trying to make our project become a convenient and cheap disease-detecting method in people's daily life.

ShanghaiTech

Region: Asia - China
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 3 - #209 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room208 - 2:15 PM - 2:45 PM

Fast & Fidelity - a circuit system achieving high input-output concurrence

Input, controller, and output have been the standard procedure of engineered regulatory biocircuit. However, the precise input-to-output control may fail at times mainly due to (i) delayed responses from input signals to output signals, and (ii) unexpected interactions between the host and exogenous circuits. For example, previous iGEM projects primarily focused on the single time response of systems, which underestimated the fact that continuously changing inputs may cause the disorder of output signals. Therefore, a system needs to be constructed for rapidly responding to the changing input signals and eliminating the superposition between outputs from different input signals. In this context, we design a high-fidelity control system with a feedback loop and orthogonal ribosome, which allows the outputs to respond precisely to the changing input signals. We envision that our control system will offer the synthetic biology community a novel solution to manipulate uncertain input.

SHPH-Shanghai

Region: Asia - China
Section: High School
Track: High School
Poster: Zone 2 - #146 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room312 - 5:15 PM - 5:45 PM

A new biological method to degrade biofilm.

Our team finds that lactic acid produced by Lactobacillus delbruckii ND02 is an acid with considerable effect of biofilm degradation. In order to support Lactobacillus delbruckii for acid secretion, lysozyme is used to hydrolyze polysaccharides in the biofilm to smaller fragments of mono and disaccharides. Sequence that codes for lysozyme is combined with sequence of Lactobacillus breris that codes for S-layer protein signal peptide, which promotes the secretion of lysozyme. The combined sequence is then transferred to the acid producing Lactobacillus delbruckii for expression.With nutrients provided by hydrolyzed polysaccharides, Lactobacillus delbruckii secretes lactic acid that further degrades the biofilm. As the pH of the system gradually decreases, the ability of Lactobacillus delbruckii adhering to biofilm increases, In addition, hydrogen peroxide is secreted for sterilization when the pH drops below 3. This produces a positive feedback loop for biofilm degradation and its effect is expected to be significant.

SHSBNU China

Region: Asia - China
Section: High School
Track: High School
Poster: Zone 1 - #57 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room309 - 5:15 PM - 5:45 PM

Biofilm x Laccase

The textile industry creates environmental problems due to the release of highly polluting effluents containing substances from different stages of dyeing that are resistant to light, water, and various chemicals. These dyes would do harm to human health and ecological system. The biological degradation of dyes is an economical and environmentally friendly alternative. Thus, the aim of team SHSBNU_China is to create a biofilm for discoloration of synthetic reactive dyes. The team would use biofilm of E. coli and engineered it to contain the laccase CotA from B. subtilis, which is a polyphenol oxidase that can catalyze the degradation of dyes. In the form of living biofilm, the bio-degradation will be more resistant to stress from environment or different effluents.

SHSID China

Region: Asia - China
Section: High School
Track: High School
Poster: Zone 1 - #10 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room302 - 2:15 PM - 2:45 PM

Everglow

With electricity consumption increasing across the globe, the conservation of energy has become a topic of major concern. Our team has devised an innovative solution to reduce electricity usage by attempting to create genetically modified bioluminescent plants. By altering particles on the microscopic level, we hope to create plants that can glow and thus replace electricity in the future. To these ends, our team conducted experiments to transfer the lux operon, a cluster of genes (LuxCDABEG) that control bioluminescence in the bacterial species Aliivibrio fischeri, to plant species like Nicotiana tabacum. We also attempted to insert an extra copy of LuxG to enhance the effects of bioluminescence. The results are promising and point to the possibility of creating a greener alternative to current lighting. Furthermore, we will design a new plasmid that can detect potential stress factors like ethanol and report the signal with stronger bioluminescence.

SHSU China

Region: Asia - China
Section: High School
Track: High School
Poster: Zone 3 - #204 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room302 - 2:45 PM - 3:15 PM

ExoBlood

We will engineer human cell line to produce exosomes that work as cellular hemoglobin based oxygen carriers. They can be used in blood transfusion and stroke treatment. We will first try to secrete human hemoglobin subunits and other required proteins for oxygen transport. Then we will focus on loading the protein cargo into the exosome, which we have chosen for the reason of immune-compatibility and easy production. The exosomes will be loaded endogenously with hemoglobin using membrane anchored proteins (CD63) or using exosome-forming pathways inside the cell (WW tag and Ndfip1). By doing this, we will produce an efficient method for future iGEM teams to create protein-loaded exosomes that can be used in therapeutics and develop a potential blood replacement.

SIAT-SCIE

Region: Asia - China
Section: High School
Track: High School
Poster: Zone 3 - #192 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room309 - 4:45 PM - 5:15 PM

COPE: CRISPR/Cas9-OMV-signal Peptide Encapsulation technique mediated targeting of oncogene in Fusobacteria Nucleatum

Outer Membrane Vesicles(OMVs) are a ubiquitous type of vehicles that continuously bud off from gram-negative bacteria's outer membrane, serving as a communicative tool between bacteria. As natural kins to the bacterial membrane, they can preserve the integrity and bioactivity of sensitive Cas9 proteins and single guide RNA (sg-RNA) within, when used as a delivery tool. Our project aims to construct a system that uses OMVs as vectors for transporting the Cas9 protein and sgRNA into the host cells to achieve efficient muting of the virulent gene of interest in its genome. We expressed Cas9 and sgRNA together with a signal peptide enabling them to reach the bacteria's periplasm to be encapsulated by OMVs. We expect this technique would reveal more flexible approaches in both in vitro and in vivo genetic engineering, thus enlarging the armamentarium of Synthetic Biology.

SJTU-BioX-Shanghai

Region: Asia - China
Section: Undergraduate
Track: Diagnostics
Poster: Zone 4 - #234 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room304 - 11:00 AM - 11:30 AM

ECHO: E.coli for Colon Health Observation

Colorectal cancer being a severe illness worldwide, its mortality rises along with diagnosis delay. As a result, an accurate method for early diagnosis is in desperate need. Therefore, this year our team comes up with an engineered E.coli used for early, non-invasive detection of colorectal cancer. Due to the combination with ultrasound technique, we name it, ECHO. When our device arrives at the colorectal area after capsule degradation, it stabilizes on cancerated tissue through antigen-peptide binding, meanwhile expressing gas vesicles in vivo, enabling the rapid detection and location of the cancer foci using ultrasound. Besides usage on detection, ECHO also synthesizes azurin used to eliminate cancer cells after being triggered by environmental factors in cancerated area. At last, after ultrasound detection and medicine synthesis, arabinose will be consumed to trigger self-destruction pathway. To sum up, our device introduces an applicable and innovative non-invasive technique in early diagnosis of colorectal cancer.

SJTU-software

Region: Asia - China
Section: Undergraduate
Track: Software
Poster: Zone 3 - #187 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room311 - 4:45 PM - 5:15 PM

Metlab: a metabolic network alignment tool

Our project, Metlab, is a metabolic network alignment tool. User can input a pathway designed by themselves, then our software can align the pathway to the networks in the database, and show the aligned part of the networks. With the help of our software, user can discover the natural pathways similar with the pathway they design.

SKLMT-China

Region: Asia - China
Section: Undergraduate
Track: Environment
Poster: Zone 1 - #41 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room310 - 9:00 AM - 9:30 AM

Planet protect plan

Pseudomonas fluorescence Pf-5 is kind of biocontrol bacteria which can be used in the environmental protection. Compared with E.coli, the developed organisms, the toolkit for Pseudomonas fluorescence seems hasn't been exploited well. This year, SKLMT-China wants to construct a library of artificial constitutive promoters as a useful tool for the model-based fine-tuning of gene expression in Pseudomonas fluorescence. The strength of different promoters will be characterized by a reporter gene, firefly luciferase. Given that P. fluorescence pf-5 has a poor ability to degrade nicotine in the natural environment, we hope to engineer this bacteria with a nicotine degradation gene cluster (about 30Kb) from P.putida S16 by red/ET recombination technology. In this way, the nicotine degradation pathway in P. fluorescence pf-5 could be improved so it can degrade nicotine more efficiently. Combined with the promoter library, pf-5's nicotine degradation efficiency can be easily controlled.

SMMU-China

Region: Asia - China
Section: Undergraduate
Track: Therapeutics
Poster: Zone 2 - #118 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room302 - 9:00 AM - 9:30 AM

CaRTIN: Reversion of Failing Heart with a Controlled Gene-therapy via Cardiomyocyte RyR2 Targeting Intra-Nanobody

Chronic PKA phosphorylation of RyR2 has been shown to lead to cardiac dysfunction. We designed a targeting device, CaRTIN (Cardiomyocyte RyR2 Targeting Intra-Nanobody), to implement RyR2-specific inhibition of phosphorylation. Here, one of the isolated RyR2 nanobodies, AR185, inhibiting RyR2 phosphorylation in an in vitro assay was then chosen for further investigation. We investigated the potential of adeno-associated virus (AAV)-9-mediated cardiac expression of AR185 to combat post-ischemic heart failure. Adeno-associated viral gene delivery elevated AR185 protein expression in rat heart, and this administration normalized the contractile dysfunction of the failing myocardium in vivo and in vitro. Moreover, CaRTIN therapy to failing cardiomyocytes reduced sarcoplasmic reticulum (SR) Ca2+ leak, restoring the diminished intracellular Ca2+ transients and Ca2+ load and reversed the phosphorylation of RyR2. To achieve controlled intra-nanobody release, a BNP promoter based platform was also accessed. Our results established a role of CaRTIN as a promising therapeutic approach for heart failure.

SMS Shenzhen

Region: Asia - China
Section: High School
Track: High School
Poster: Zone 1 - #47 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room208 - 9:30 AM - 10:00 AM

The prevention and treatment of dental caries

This year, SMS_Shenzhen team will focus on using synthetic biologic method to prevent dental plaque. Dental plaque can be led by Streptococcus mutans, a bacteria lives in human's mouth. Clinging to the teeth in thin layers called biofilm, S. mutans digests sucrose and produces acids that can eat into enamel and cause cavities. Specifically, dextran is the main component of the biofilm. We find two enzymes, the first one is named 'Dextranase', which can hydrolyze the dextran in the biofilm; and the second one is named 'FruA', which can decompose the resource that S. mutans uses to produce bioflim. The gene of these two enzymes are cloned into E. coli and Lactobacillus. In our experiment, we would use E.coli to produce these two enzymes for relative measurement like enzyme activity. Then, for commercial design, we would produce leben with our Lactobacillus which can secrete these two enzymes.

Sorbonne U Paris

Region: Europe - France
Section: Overgraduate
Track: Foundational Advance
Poster: Zone 4 - #214 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room208 - 3:15 PM - 3:45 PM

Suga[R]evolution

Sugar is the main source of energy for the cell factories used in synthetic biology. However, its massive production has dramatic impacts on the environment. Therefore, in order to bring a solution to this serious environmental issue, we want to engineer a green microalgae, Chlamydomonas reinhardtti, to allow an ecofriendly sugar production within marine waters, limiting the competition with arable lands. Moreover, to be able to spread the use of microalgae as a chassis, more genetic tools to engineer it are still required. To do so, we will enrich the recently developed Modular Cloning (MoClo) toolkit for C. reinhardtti with a synthetic retrotransposon to generate in vivo continuous directed evolution. It will be the first time that such genetic tool is applied to non-baring plasmid cells such as microalgae. This approach enables the generation of new proteins with tailor-made functional properties as well as the optimization of biological systems.

SSHS-Shenzhen

Region: Asia - China
Section: High School
Track: High School
Poster: Zone 1 - #24 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room208 - 9:00 AM - 9:30 AM

Beetle Rival ---An RNAi-based approach for Phyllotreta striolata control

Phyllotreta striolata is one of the most destructive insects worldwide. However, the present insect control strategies have certain limitations, for example, chemical insecticide applications will cause dietary pollution and environmental destruction. Here, we aim to develop an RNAi-based approach for controlling P. striolata. This approach is to topically apply exogenous siRNAs/shRNAs onto vegetables, ingestion of the sprayed siRNAs or shRNAs by P. striolata will induce the RNAi mechanism in the insect and lead to its death. In our project, siRNAs/shRNAs were designed based on the mRNA sequences of their target genes. The effect of both siRNAs and shRNAs in mediating RNAi in P. striolata were examined. Experimental results show that both siRNAs and shRNA could successfully silence their target genes, which was demonstrated by the survival rate decrease after siRNA or shRNA treatment. Our project provides an environmentally friendly approach for insect control.

SSTi-SZGD

Region: Asia - China
Section: Undergraduate
Track: Manufacturing
Poster: Zone 4 - #247 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room309 - 10:00 AM - 10:30 AM

HYALURONIC ACID MICRO FACTORY : A BACTERIUM PRODUCES LOW MOLECULAR WEIGHT HYALURONIC ACID

The production of hyaluronic acid(HA)has been changed from traditional animal tissue formulation to microbial fermentation. However, there is no report that tissue cells or microorganisms can directly produce low molecular weight HA . In order to prepare low molecular weight HA , physical and chemical methods are needed. However, there are many drawbacks in physical and chemical methods, such as poor product stability, low efficiency, complex reaction conditions and possible environmental pollution. This year our project constructed a recombinant strain Bacillus subtilis 168E which could directly produce different molecular weight HA products by regulating the activities of LHAase. The HasA gene and identified precursor genes was transferred into Bacillus subtilis. Since HA of high molecular weight was produced at this time, we transferred the LHAase gene into Bacillus subtilis 168 which is from leech resources coding hyaluronidase. Therefore the HA could be enzymatic hydrolyzed to different molecular weight.

St Andrews

Region: Europe - United Kingdom
Section: Undergraduate
Track: Diagnostics
Poster: Zone 4 - #225 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room302 - 4:45 PM - 5:15 PM

A system for detection of bacterial cell lysis and the presence of biofilms

A split mNeongreen fluorophore system was employed such that one half of the protein was retained within a certain population of Escherichia coli, while a different population exported the other component. Upon lysis of the former group, the two protein domains associated to form the complete molecule, which fluoresced detectably. Regarding the detection of biofilms, several methods were tested. An mCherry fluorophore was fused to binding proteins for each of the following components of biofilms: the polysaccharides alginate and Psl (major components of the biofilms of Pseudomonas aeruginosa), cellulose, and double stranded RNA. Studies were carried out to determine which of these most accurately predicted the presence or absence of biofilms as compared with the results of traditional detection methods.

Stanford

Region: North America - United States
Section: Undergraduate
Track: New Application
Poster: Zone 2 - #149 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room304 - 5:15 PM - 5:45 PM

A transcription-inducing bacterial detection platform for DNA, small molecules, and proteins

Two-hybrid systems are a well-established tool for screening protein-protein interactions in yeast and bacteria; however, there is little precedent of using these systems for detection. By swapping bait and target proteins for single-chain antibodies and dCas9, we have adapted a bacterial two-hybrid system as a modular E. coli-based detection platform for small molecules, proteins, and DNA. While most whole-cell detection methods indicate the target molecule's presence by activating a visible reporter, our system initiates transcription of a downstream gene. This allows us to activate gene expression in response to a specific signal, effectively turning any DNA sequence, small molecule, or protein into a potential transcription factor. This holds tremendous promise as a safety mechanism for engineered bacterial strains: if an undesirable mutation or molecular product is detected within a cell, our system can kill the cell by activating an apoptotic gene, or express a fluorescent protein for live-cell sorting.

Stanford-Brown-RISD

Region: North America - United States
Section: Undergraduate
Track: Manufacturing
Poster: Zone 1 - #38 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room306 - 11:00 AM - 11:30 AM

Functionalizing mycotecture

A turtle carries its own habitat. While it is reliable, it costs energy. NASA makes the same trade-off when it transports habitats and other structures needed to lunar and planetary surfaces increasing upmass, and affecting other mission goals. But what if it didn't have to be transported from earth? What if it could be grown on planet? The Stanford-Brown-RISD iGEM team proposes to explore the use of fungal mycelium, the vegetative structure of fungi, as a light-weight, durable material that could be grown on planet using spores to create habitats and other necessary items. The team will focus on developing a design for a habitat from mycelium as a proof of concept, and using synthetic biology to enhance the filtration and adhesion capabilities of the mycelium. The team will further explore the implications and uses of these biodegradable, self-growing structures made of fungi on Earth.

Stockholm

Region: Europe - Sweden
Section: Overgraduate
Track: Environment
Poster: Zone 5 - #273 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room304 - 12:00 PM - 12:30 PM

Biotic Blue: Fighting antibiotic pollutants in the Baltic Sea

Antibiotics are among the most impactful polluters of water resources. Their presence negatively affects the environment due to ecotoxicity and potential contribution to antibiotic resistance. Sulfamethoxazole (SMX) is among the most prevalent and persistent antibiotics in the Baltic Sea. We want to tackle this problem by harnessing the oxidative power of a laccase originating from Trametes versicolor. This enzyme has the capacity to oxidize a wide range of aromatic compounds. We aim to express this laccase in Pichia pastoris and engineer its ability to inactivate SMX using advanced in silico rational design methods. Enzyme activity, SMX removal and toxicity assays were performed for analysis. In our final product, the laccase will be immobilised on magnetic beads, creating a reusable recovery system powered with magnetism. It can be implemented at wastewater treatment facilities or at entering points of the sewage system in hospitals, elderly homes and houses.

Stony Brook

Region: North America - United States
Section: Undergraduate
Track: Energy
Poster: Zone 2 - #163 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room302 - 3:15 PM - 3:45 PM

The Sucrose Factory

In 2017, humans released ~32.5 gigatons of CO2 into the atmosphere. Even if anthropogenic carbon emissions ended today, the CO2 in our atmosphere would persist for thousands of years, causing ocean acidification and global warming. Current carbon sink technology is not economically feasible and would cost trillions of dollars at modest estimates. We believe the solution lies in cyanobacteria - photosynthetic prokaryotes - as they were the first organisms to sink carbon dioxide billions of years ago and are some of the most efficient autotrophs. Our approach is to induce sucrose secretion for the industrial production of biofuels and bioplastics, while simultaneously sinking CO2. Additionally, to address the lack of promoters available for cyanobacteria synthetic biology research, our team developed a variety of constitutive, light-inducible, and nutrient-repressible promoter BioBricks for our strain of Synechococcus elongatus. We hope these promoters will be used to produce other high value carbon sinking products.

Stuttgart

Region: Europe - Germany
Section: Overgraduate
Track: Manufacturing
Poster: Zone 5 - #303 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room304 - 3:15 PM - 3:45 PM

The Anti Germ Coating - TAGC

To stop the spreading of germs in public places is an issue everyone can agree on its usefulness. Our team aims to produce an antimicrobial surface coating which tackles this problem. This coating, called 'The Anti Germ Coating', TAGC, consists of a chitosan matrix, coupled with rhamnolipid and nisin. All of these substances have shown antimicrobial properties in previous studies. During the iGEM competition we produced two BioBricks until this day, one for nisin-production and one for chitosan production. A third BioBrick, which should enable rhamnolipid production is currently under construction. Two approaches of coupling are used to generate our coating. The first method uses a surface-accessible tyrosine to couple a modified nisin to chitosan enzymatically. Chemical linkage of rhamnolipid is achieved by using divinyl adipate, which acts as a cross-linker. Antimicrobial properties of the coating are currently investigated. First results seem to be very promising.

SUIS Shanghai

Region: Asia - China
Section: High School
Track: High School
Poster: Zone 5 - #320 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room310 - 2:45 PM - 3:15 PM

Better Together: Engineering Bacteria for Symbiotic Relationships with Micro Algae.

Although numerous strains of microalgae have already been identified as being useful for biotechnology purposes, to make commercial up-scaling of algal production cost effective, research into novel approaches to enhance microalgae growth, and their products is needed. Microalgae and bacteria have existed together from the early days of evolution. This co-evolution provides an interesting avenue for industrial biotechnology exploration. Synthetic biology presents us with an opportunity to rationally design and construct microbial communities with well-defined objectives. The co-cultivation of engineered bacteria and micro-algae provides the possibility for enhancing associations between these populations. We aim to engineer a strain of E.coli which will help increase the biomass of microalgae through nutrient-exchange-based mutualism. Our engineered bacterium was designed to express the gene cluster for the biosynthesis of Vibrioferrin, a type of siderophore. Our construct will allow for the increased bioavailability of iron for many species of microalgae once co-cultured.

SUSTech Shenzhen

Region: Asia - China
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 5 - #263 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room207 - 12:00 PM - 12:30 PM

A 'Time-saving Machine' for Genetic Screening in Two-Cell System

With rapid development of Molecular and Cellular Biology, we know more about what's in a cell but still know little about how cells interact among populations. Cell-Cell Interactions form a complicated signaling network which is far beyond our imagination. SUSTech 2018 Team developed a 'time-saving machine' to study cell signaling networks based on genetically engineered Two-Cell system, a Secreting and Responding cell. Wnt signaling pathway was our proof-of-principle. Secreting cells secret Wnt signal and were modified by CRISPR-Cas9 knockout system for genetic screening on Wnt secretion. Responding cells were constructed by inserting a strong TCF promoter with GFP fluorescence for visualization of Wnt signal level. Two types of cells were then encapsulated by our microfluidic system producing thousands of Two-Cell droplets at a time. Unlike traditional coculture method, this is time-saving. In future, our systems may have wider applications in synthetic biology, drug screening and immunological recognitions.

SYSU-CHINA

Region: Asia - China
Section: Undergraduate
Track: Therapeutics
Poster: Zone 1 - #1 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room306 - 4:15 PM - 4:45 PM

Braking Bad--Torwards a safer CAR-T therapy

CAR-T therapy is one of the most promising treatment for cancer, with multiple ongoing clinical trials worldwide and 2 therapies approved by the FDA. However, without proper control after administration of CAR-T cells, severe adverse effects may bring fatal risks to the patients, especially during the clinical trial stages. While suicide switches serve as common methods for controlling adverse effects, they completely halt the expensive treatment, and repeating the treatment process could be a burden for the patients, both physically and financially. To provide a safer yet affordable CAR-T therapy, we developed a reversible safe switch controlled by small molecules called CAR BRAKE. By expressing U24 protein of the human herpesvirus 6A under the control of tet-ON promoter, we can downregulate CAR molecules on the cell surface through endosomal recycling inhibition. This could potentially be used as a universal add-on for all CAR-Ts and TCR-Ts to ensure safety.

SYSU-Software

Region: Asia - China
Section: Undergraduate
Track: Software
Poster: Zone 1 - #29 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room304 - 5:15 PM - 5:45 PM

CO-RAD: Collaborative optimization platform with recommendation, analysis and design

Designing genetic circuits and protocols by teamwork is pervasive for synthetic biologists, but it's still hard to cooperate with partners using traditional collaborative software for the complexity and hierarchy in synbio design. Here, we develop an open-access software CO-RAD to facilitate the collaboration, recommendation and analysis for the synthetic biologists. CO-RAD allows users to edit circuits and protocols online while collaborating with other users in real-time. For assisting users in optimizing their circuits, we strengthen CO-RAD's ability of recommendation and analysis. After designing circuits in embedded design platform easily, users will get similar circuits from our interactive database by collaborative filtering algorithm. Users can also acquire various projects information efficiently through our search engine. Based on directed evolution algorithm, our software can simulate performance of circuits and provide suggestion of optimization. Moreover, some deep level information of circuit sequence can be showed in our software concisely.

SZU-China

Region: Asia - China
Section: Undergraduate
Track: Manufacturing
Poster: Zone 1 - #54 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room306 - 2:15 PM - 2:45 PM

Cockroach terminator

This year we designed a fungal cockroach terminator system based on Metarhizium anisopliae. It can infect cockroaches in a very high efficiency and eventually lead to death. Our system consists of three parts. First, we use a hydrophobic protein called HsbA. It can help our fungus attach better to the cockroaches. Second, we transferred Bbchit which encodes the chitinase that can penetrate the surface of the cockroaches. After our transgenic Metarhizium anisopliae enter the hemolymph of cockroach. The third gene we transferred called MCL1 will combine with the specific antigen on the surface of Metarhizium anisopliae , which makes our system 'invisible' and can avoid the detection of the immune system. This allows our transgenic Metarhizium anisopliae to reproduce themselves greatly and eventually lead to cockroach's death. For better application we designed a device to contain our emulsifiable powder which we will definitely show you in giant jamboree.

Tacoma RAINmakers

Region: North America - United States
Section: High School
Track: High School
Poster: Zone 1 - #44 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room207 - 12:00 PM - 12:30 PM

Ticket or Quit It: Protecting Families from Arsenic Contamination

In Tacoma, Washington, arsenic pollution from the ASARCO copper smelter continues to devastate the surrounding communities' soil and water. Even small amounts of arsenic pose a threat to long-term community health, including cancer and developmental issues in children. The city and state have spent more than $62,000,000 over 18 years testing around 450 yards in the region, with efforts still underway. Our iGEM team seeks to change that paradigm by engineering an affordable and easy-to-use biosensor that utilizes chromoproteins made in the presence of bioavailable arsenic. Our biosensor is user-friendly by design and will not require hazardous chemical reagents. The Tacoma RAINMakers' goal is to improve community understanding of this local environmental issue and provide a low-cost tool that can be used by the citizens of Tacoma and communities worldwide to detect heavy metals.

Tartu TUIT

Region: Europe - Estonia
Section: Undergraduate
Track: Environment
Poster: Zone 2 - #92 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room311 - 9:30 AM - 10:00 AM

Eco-friendly sunscreen: MAAs+yeast extract

Nowadays a great number of commercially produced sunscreens contain chemical compounds with a broad-spectrum ultraviolet coverage, such as oxybenzone and octinoxate, which are extremely toxic to the environment. Every year around 14,000 tons of sunscreen is washed into the oceans and seas, resulting in a dramatic increase of the toxicity level, causing a variety of pathologies to corals. Tatru_TUIT iGEM team will engineer S. cerevisiae to produce yeast extract enriched with biological sunscreen compounds Shinorine and Porphyra-334, both of which belong to Mycosporine-like Amino Acids (MAA). In order to produce MAAs, we will introduce 4 genes from cyanobacteria Nostoc commune KU002 (MysA, MysB, MysC, MysD) or Actinosynnema mirum DSM 43827(amir_4259, amir_4258, amir_4257, amir_4256) into yeast Saccharomyces cerevisiae. Our final product, which combines positive properties of both biological sunscreen compounds and yeast extract, could be further used in cosmetic products like creams, lotions, etc.

TAS Taipei

Region: Asia - Taiwan
Section: High School
Track: High School
Poster: Zone 1 - #36 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room309 - 4:15 PM - 4:45 PM

Say No to Glow: Reducing the carcinogenic effects of ALDH2 deficiency

Turning red after consuming alcohol may seem like a mere social inconvenience. Yet, this flushing response is caused by an accumulation of acetaldehyde, a carcinogenic intermediate of alcohol metabolism. Acetaldehyde is broken down into harmless acetate by aldehyde dehydrogenase 2 (ALDH2). ALDH2 deficiency, the result of a point mutation in the ALDH2 gene, produces a much less efficient ALDH2 enzyme, leading to an accumulation of acetaldehyde and the subsequent flushing response. While about 8% of the global population is ALDH2 deficient, in our home, Taiwan, approximately 47% of the population carries this genetic mutation--the highest percentage in the world! Studies show that ALDH2 deficiency greatly increases the risk of developing esophageal and head and neck cancer. Thus, our project aims to produce recombinant ALDH2 to decrease levels of acetaldehyde in the upper digestive tract region. We envision delivery of ALDH2 as a purified protein or in consumer-friendly probiotics.

Tec-Chihuahua

Region: Latin America - Mexico
Section: Undergraduate
Track: Food & Nutrition
Poster: Zone 2 - #102 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room207 - 9:00 AM - 9:30 AM

Production of antimicrobial peptides in Escherichia coli for Paenibacillus larvae and Melissococcus plutonius inhibition

American and European Foulbrood are diseases that affect bee (Apis mellifera) larvae worldwide. In the last two years, 53 countries suffered from these diseases, 6 of them are among the top 10 honey producers. The causal agents of these ailments are gram-positive bacteria: Paenibacillus larvae and Melissococcus plutonius respectively. Nowadays, two techniques for the treatment of Foulbrood are used: antibiotics and incineration of hives. The former promotes the development of antibiotic resistance in bacteria while the latter results unprofitable for beekeepers. Therefore, we propose the production of bee antimicrobial peptides (AMPs) in Escherichia coli to treat P. larvae and M. plutonius infections. Defensin 1, abaecin, defensin 2, and apidaecin are each expressed in a different BL21 (DE3) culture. PelB leader peptide and a 6X His-tag foster adequate expression and further purification. Through mathematical modeling, the diffusivity of PLGA-nanoencapsulated apidaecin is evaluated for future in vivo delivery in the bee system.

Tec-Monterrey

Region: Latin America - Mexico
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 2 - #133 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room207 - 11:30 AM - 12:00 PM

E.Coding

CRISPR-Cas technology has the capability of storing information. This year, iGEM team Tec-Monterrey aims to use the CRISPR-Cas system to store specific DNA sequences in the genome of E. coli in order to save information about the environment surrounding the bacteria. To make this possible, Cas1-Cas2 proteins, which create the protospacer acquisition in the CRISPR system, are used to insert a synthetic DNA sequence in the CRISPR array within the genome of the bacteria. This synthetic sequence is produced by a second system, called SCRIBE. The final step of our project is reading out the inserted DNA sequence. Using specific primers for polymerase chain reaction (PCR) are used to amplify a section of the CRISPR array where the sequence is inserted. Taking together both systems, our project intends to act as a biological tape recorder capable of sensing external stimuli in the environment and storing their presence in the genome.

TecCEM

Region: Latin America - Mexico
Section: Undergraduate
Track: Therapeutics
Poster: Zone 5 - #315 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room309 - 4:45 PM - 5:15 PM

Novel Treatment: Tissue regeneration in burns by recombinant proteins with nanodelivering on a MiniSkin Simulator

The percentage of the mexican population that can afford a treatment for second degree burn injuries is low since they demand a large spend when treated. Representing the third cause of infant mortality in Mexico, it stands for an urgent issue to assess. This project approaches such problematique with the design of a multi-glycopeptide scaffold and the recombinant growth factor Leptin B to induce fibroblast proliferation. Nanoencapsulation was employed to ensure proper delivery and distribution. Growth measurements were evaluated through cell image analysis and lactate dehydrogenase activity as an indirect indicator, obtained from the culture medium in the MiniSkin Simulator, which is a hardware to test molecules in a 3D culture. This system could enhance tissue regeneration, minimizing infection risks and treatment lapses for affected patients with second degree burns.

TecMonterrey GDL

Region: Latin America - Mexico
Section: Undergraduate
Track: Therapeutics
Poster: Zone 2 - #90 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room306 - 9:30 AM - 10:00 AM

Lactobachill: a smart psychobiotic with anxiolytic and antidepressant properties

Around 300 million people suffer from depression and anxiety worldwide. Although there are several therapeutic strategies available, treatments targeting the gut-brain axis are gaining importance due to the strong relationship between alterations in the microbiota, systemic inflammation, and psychiatric disorders. Therefore, we aimed to develop a novel approach for the treatment and prevention of depression and anxiety. For this, we will genetically engineer a strain of Lactobacillus rhamnosus to detect increases in the levels of stress in the body. This psychobiotic, which we have termed 'Lactobachill', will secrete soluble receptors (i.e., sgp130 and a mutated variant of sgp80) that could selectively inhibit the aberrant trans-signaling pathway of the pro-inflammatory cytokine IL-6. We will also characterize the efficiency of secretion of these receptors, which will be coupled to bacterial signal peptides from Sec-dependent pathways. We envision that Lactobachill could be used as an adjunct to current treatments against anxiety and depression.

Thessaloniki

Region: Europe - Greece
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 2 - #165 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room311 - 9:30 AM - 10:00 AM

Galene: A genetic toolbox for controlled gene expression

Biological systems are unpredictable, noisy and difficult to maintain stable even under standardized conditions, thus making controlled gene expression difficult. Combined with the fickleness and stochasticity associated with genetic circuitry, fluctuations in the production rate of a desired protein are inevitable. Through model-driven design, we engineer systems which guarantee constant gene expression, decoupled from gene/plasmid copy number, that can be induced to meet the desired expression level. We implement a Type I incoherent feedforward loop in E. coli cells to stabilize promoters using TAL Effectors, CRISPRi and cis-acting sRNA repressors that regulate a downstream attenuator. Furthermore, to render our system versatile, we introduce a theophylline riboswitch that allows on-the-fly control of stabilized protein production. We provide a foundational advance tool that enables fine tuning of complex metabolic pathways, functionality improvement of logic gates and suppression of fluctuations in gene expression.

Tianjin

Region: Asia - China
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 4 - #259 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room306 - 3:15 PM - 3:45 PM

Life Tik Tok

Organisms are adapted to the relentless cycles of day and night thanks to circadian clocks which regulate biological activities with ~24-hour rhythms. This year, we reconstruct KaiABC clock system in the bio-rhythm expression of yeast. This will not only perfect the experimental data of the template xenotransplantation, but also provide more reliable materials in regulating and exploring the oscillation. Correlated with the yeast two-hybrid technique, reporter genes help detect the results of our construction. To work as a powerful heterologous regulator, we investigate the regulatory mechanism of the clock through the systematic alteration of chromosome topology. And a novel application we envisioned was that S. cerevisiae can produce different products alternately under the periodic regulation day and night.

TJU China

Region: Asia - China
Section: Undergraduate
Track: New Application
Poster: Zone 1 - #3 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room310 - 9:30 AM - 10:00 AM

Booming CRISPRers

This year, the CRISPR-Cas family is the protagonist in our story series. The old member, dCas9, is the enhancer for the heavy-metal detection based on E. coli, while the newbie, Cas12a, is a worker for the high-throughput cancer-related SNP detection chip. We have also built a 'highway' for tracking and delivering the Cas9/sgRNA complex in mammalian cells, and we try to apply it to manipulate the mitochondrial genome.

Tokyo Tech

Region: Asia - Japan
Section: Undergraduate
Track: New Application
Poster: Zone 2 - #158 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room312 - 2:15 PM - 2:45 PM

Finding Flavi - Establishment of dengue virus serotype prediction and detection systems

Dengue virus, which is in the flavivirus family, is a worldwide spread virus and has huge impact on society, however, not many developing countries are recognizing its danger. Dengue virus is unique in terms of its four different serotypes. Multiple infection can easily cause severe dengue, appearing hemorrhage and organ damage. It is important to grasp which serotype the patient is infected, however, there is not enough data about each serotype in a year. To tackle the situation, we succeeded in the development of the serotype prediction system using stochastic process analysis. This system can predict the patient's serotype by simulating the past data. We also developed the simple and fast testing kit that can detect serotype with fluorescence, so that we can check the patient easily and get enough data to estimate the patients' serotypes more accurate. In the future, this system can contribute to other flavivirus detection system.

Tongji China

Region: Asia - China
Section: Undergraduate
Track: Therapeutics
Poster: Zone 1 - #25 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room309 - 5:15 PM - 5:45 PM

Ocandy

Neoantigens, which are the abnormal proteins produced by mutations in cancer cells that activate the immune system have already become the hotspots of concern to researchers. Neoantigen is Individualized and is a promising concept to be used in cancer treatment. Type III secretion system (T3SS) acts as a promising tool for protein delivery directly into the target cells. We establish a method which can deliver neoantigens into immune system using the Type III secretion system of Pseudomonas aeruginosa. We select the colorectal cancer as our target and use the bioinformatic method to filter our item antigens. Then we use the T3SS to deliver the item antigens into immune system through orally intake of engineered attenuated bacteria. Since for the T3SS, there are almost no restrictions on the delivery of short peptide antigens, this method has the flexibility to be adapted to, if there are effective neoantigens, any specific cancer patient.

Tongji-Software

Region: Asia - China
Section: Undergraduate
Track: Software
Poster: Zone 1 - #88 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room304 - 4:45 PM - 5:15 PM

Alpha Ant

Advancements in metabolic engineering have enabled us to engineer enzymes and construct novel pathways for various applications including drug discovery and value-added biochemical production. However, it is hard to design and construct pathways with high efficiency and fidelity while balancing the metabolic burden of the microorganism.Thus,our project is to develop powerful and convenient web tool for synthetic biologists to design proper metabolic pathways while taking into account several criteria such as thermodynamic feasibility, material competition of heterologous reactions, atom conservation, toxicity of intermediates.We obtain data from several databases, including KEGG,BRENDA,MetaCyc and equilibrator.The core algorithm we use is depth-first search. Other than that, we have some additional functions for users, including organism recommandation and FBA. Alpha Ant means its capacity to find the most efficient metabolic pathway is just like the ant colony's intelligence of finding the most efficient path to a food source once it has been discovered by scouts.

Toronto

Region: North America - Canada
Section: Undergraduate
Track: New Application
Poster: Zone 3 - #191 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room310 - 2:15 PM - 2:45 PM

Exploring biomass flotation as a viable separation technique for application in bioremediation processes

Our project focuses on demonstrating flotation of Escherichia coli using gas vesicle proteins (GvPs) as a novel cellular separation technique for bioremediation processes. Previous iGEM teams have demonstrated gas vesicle production and flotation in mammalian and yeast cells using GvPs from various bacterial species. Shapiro et al., (2018) engineered a GvP-producing plasmid using arg1 from Aphanizomenon flos-aquae and Bacillus megaterium to synthesize these echogenic structures and observed that high expression enabled E. coli to float. Our goal is to replicate and improve their flotation results by modifying arg1 to achieve consistent flotation using a specific induction protocol. We propose that using this technique may be a cost-effective separation technique for various bioremediation processes. Upon sorption or uptake of pollutants or valuable materials, this technique could allow for simpler extraction of pollutant-harboring or heavy metal-bound bacteria. We have developed a bioreactor model to investigate this claim.

Toulouse-INSA-UPS

Region: Europe - France
Section: Undergraduate
Track: Manufacturing
Poster: Zone 2 - #155 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room208 - 4:15 PM - 4:45 PM

Cerberus : Creating Endless Possibilities with Cellulose

Cellulose is broadly used in medicine, textile and stationery. However, functionalising cellulose could lead to exciting innovative material developments such as conductive paper or self-disinfecting bandages. Here, we designed a versatile linker protein to enable the fixation of a wide range of organic and inorganic molecules on cellulose. Since the design is based on the fusion of three fixating protein heads, we named it Cerberus, like the mythological dog. The first head is a protein domain of the type 3 Carbohydrate Binding Module family to bind cellulose. The second is a streptavidin domain, with high affinity for biotinylated compounds. The last head features an unnatural amino acid, azidophenylalanine, allowing click chemistry to form covalent bonds. Each head has been assessed and cellulose with new functions has been produced. This work combines synthetic biology, chemistry and molecular modelling and paves the way to a revolution in our use of cellulose-sourced materials.

TPHS San Diego

Region: North America - United States
Section: High School
Track: High School
Poster: Zone 1 - #31 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room207 - 4:45 PM - 5:15 PM

Chitinolytic Activity of Serratia Marcescens Chitinase in Response to Various Species of Pathological Fungi

Fungi producing harmful mycotoxins flourish on various crops. Such fungal infections significantly reduce sustainability and food production in developing countries, where mycotoxin exposure from lack of advanced food storage are responsible for severe economic losses and 40% of diseases. Our team developed a modified enzyme chitinase capable of breaking down chitin cell walls. Specifically, Serratia Marcescens Chitinase works against multiple families of fungi. By GSTChiA Chitinase genes with a signal sequence from araC, we successfully generated an Escherichia coli line that secretes chitinase against Rhizoctoniasolani Solani, Alternaria raphani, and many other pathogenic fungi. Expression of GSTChiA was further quantified through analysis of chitin compounds. This project will provide an easily accessible method capable of combating major pathogens, saving crop yield and revenue.

Tsinghua

Region: Asia - China
Section: Undergraduate
Track: Information Processing
Poster: Zone 1 - #87 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room304 - 9:00 AM - 9:30 AM

NEON Coli - Wide-dynamic-range, fine-tuned quorum sensing positive feedback circuit

A major goal of synthetic biology is to design functional analog gene circuits that are capable of signal integration and processing. Our project presents an improved wide-dynamic-range positive feedback circuit based on bacterial quorum sensing system. Preexisting positive feedback circuits suffer from leakage problems, and to solve this we add a CRISPRi system to keep the positive feedback loop in check. This design allows us to execute fine control on signal transduction and protein expression, in our test ststem the expression of sfGFP. In order to make our project more presentable, we use this circuit to design a fluorescent bacteriograph that is able to change the picture, like a bacterial neon light. However this is not the extent of the circuit's usefulness, as it may lead to new applications in synthetic biological computations, and projects that require fine control of gene expression.

Tsinghua-A

Region: Asia - China
Section: Undergraduate
Track: Diagnostics
Poster: Zone 1 - #75 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room304 - 4:15 PM - 4:45 PM

Allergy test master: the histamine receptor based whole - yeast sensor

Histamine increases significantly in blood when allergy happens. So, we engineered the pheromone pathway in yeast to test histamine release in blood sample under one specific allergen per time. The pheromone receptor ste2 in original pathway is replaced by human Histamine receptor H3 or H4. In order to reinforce the coupling between H3/H4 and yeast G-protein, C-terminal of α subunit of G-protein is modified by replacing several amino acids from the homologous protein in human. EGFP is set behind promoter Fus1 as the reporter gene. Many previous works support our modifications. Then the models of histamine and EGFP intensity relationship and the diagnosis credence can help to give the final result. Our special-designed integrated box can finish the blood collection, reaction and data sending process. Then the result will be calculated by our server and sent back to the smart phone. Thus, our project is available in families.

TU Darmstadt

Region: Europe - Germany
Section: Overgraduate
Track: Manufacturing
Poster: Zone 5 - #292 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room208 - 5:15 PM - 5:45 PM

Combimers

Dependence on petrochemicals derived from oil and gas poses a major problem in the plastics industry and polymer production. Establishing biological precursors for high quality polymers is a hurdle we want to tackle. Poly(lactic-co-glycolic-acid), PLGA, is a copolymer used in a variety of biological applications due to its attractive properties: tailored biodegradation rate, biocompatibility, and a wide range of surface modifications for specialized utilization. The Food and Drug Administration (FDA) approves of PLGA derivates for clinical applications as surgical tools or nanoparticles in innovative drug delivery systems. Faster degradable copolymers, like poly(lactide-co-glycolide-co-caprolactone), PLGC, have similar properties and are attractive for pharmacokinetics of nanocapsule engineering. We set ourselves the goal to manufacture PLGA and PLGC in a sustainable, eco-friendly way. The required monomers will be produced by engineering of the Krebs cycle and other biological pathways in Saccharomyces cerevisiae and Escherichia coli.

TU-Eindhoven

Region: Europe - Netherlands
Section: Overgraduate
Track: New Application
Poster: Zone 2 - #138 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room304 - 4:15 PM - 4:45 PM

GelCatraz: Where E. Coli goes to stay! A Novel platform for Living Materials.

Living biomaterials are expected to revolutionize the field of medicine. This new class of devices, which incorporates biomaterials and harnesses the synthetic powers of living cells, would enable numerous applications ranging from replacement organs to personalized point-of-care medicine production. A major obstacle for the use of Living Biomaterials outside the lab is bacterial leakage, presenting both a technical issue and a safety risk. Our project aims to address this issue. We have engineered a strain of E. Coli to anchor itself into a novel dextran hydrogel by expressing an adhesive protein derived from arctic ice-binding bacteria. This platform would enable innumerable applications. As a proof of concept, we have designed a patch for chronic wounds in which anchored E. coli would secrete antimicrobial peptides to fight infections and reduce the need for systemic antibiotics and daily change of wound dressing – a painful procedure for many patients.

TUDelft

Region: Europe - Netherlands
Section: Overgraduate
Track: New Application
Poster: Zone 5 - #266 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room208 - 4:15 PM - 4:45 PM

Advanced Detection of Performance Enhancement (ADOPE): Detecting Gene Doping with Innovative Targeted Next Generation Sequencing

TU Delft iGEM 2018 aims to prevent the abuse of synthetic biology in sports by developing a genetic doping detection methodology. Gene doping has been on the list of prohibited substances in sports since 2003, yet no method has been implemented to enforce this ban. Our project, Advanced Detection Of Performance Enhancement (ADOPE), aims to provide the proof-of-concept for an efficient, secure and versatile detection method. We have modelled the detection window; implemented a suitable sample preparation method from blood; developed a valid pre-screen based on gold nanoparticle technology and developed a unique and cutting edge targeted sequencing platform based on a novel dxCas9-Transposase fusion protein and nanopore sequencing technology. Finally, we have developed an algorithm that is able to group our sequencing outputs and indicates whether the athlete used gene doping. Continuous feedback from stakeholders has focussed and improved our project, making our method all the more complete.

Tuebingen

Region: Europe - Germany
Section: Overgraduate
Track: Foundational Advance
Poster: Zone 1 - #4 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room302 - 4:15 PM - 4:45 PM

BoNT C - Licence to enter

In modern medicine treatment options involve many substances modified from natural sources, occasionally even toxins. We modify botulinum toxin in a way that leads to its detoxification. Thus, it can be coupled with a variety of other substances while not losing its specific shuttle mechanism for neuronal cells. In detail, we develop a library of different detoxified botulinum toxin derivatives which can accommodate other proteins, small molecules, and fluorochromes by specific linkers. To investigate the influence of the point mutations leading to detoxification in the active site, we conduct MD simulations. Since our shuttle mechanism could potentially be used in patients, we remove the most prevalent immune epitopes by a theoretical bioinformatics approach. Ultimately, our system is supposed to be utilized for therapy strategies and specific neuronal targeting in basic research. With our project we want to encourage future teams to think outside the box while keeping safety in mind.

Tufts

Region: North America - United States
Section: Undergraduate
Track: Diagnostics
Poster: Zone 2 - #123 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room208 - 10:00 AM - 10:30 AM

Hypothetical System for Sensing miRNA with High Specificity and Signal Amplification

miRNA is a small DNA regulatory molecule found in the bloodstream. More recently, its significance as a biomarker for various diseases and conditions from bone microfracture to various cancers has been discovered. These conditions are specifically correlated to certain sequences of miRNA, which is found in low concentrations (6-16CT PCR thresholds). To detect the miRNA with high specificity and amplification, our team proposed a system in which a complimentary toehold RNA would be created upstream of the RNA sequence for cas13a, a modified version of cas9 which would cut RNA randomly, triggering a fluorescent signal amplification when in the presence of RNAse detection kits.

TUST China

Region: Asia - China
Section: Undergraduate
Track: Environment
Poster: Zone 4 - #230 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room311 - 4:45 PM - 5:15 PM

Tetracycline Detecting and Degradation ('T D&D')

Tetracycline is a kind of antibiotic substance separated from the culture solution of Streptomyces aureofa-ciens, which belong to the common broad-spectrum antibiotic and have a great effect on many types of microorganism, this family including chlotetracycline、oxytetracycline and tetracycline.Last century, tetracycline is widely used in animal husbandry and aquaculture because of its competitive prices between with other antibiotics. As a result of this phenomenon,the pollution of tetracycline in water and soil is increasingly serious. This year, we want to construct a tetracycline detecting and degradation devices,"T D&D"system, to achieve our anticipation that sensitive detection and rapid degradation in the special devices through our constructive chasis. In our project, we would find a better ratio between detecting device and degradation device to the optimal result.

UAlberta

Region: North America - Canada
Section: Undergraduate
Track: Food & Nutrition
Poster: Zone 5 - #285 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room312 - 4:15 PM - 4:45 PM

Developing an Antifungal Porphyrin-based Intervention System (APIS) to treat Nosema infections in honey bees

Nosema ceranae is a microsporidian parasite which infects the European honey bee, Apis mellifera. Nosema infections cause energetic stress in bees and decreases their immune response. The detrimental effects of Nosema can lead to lower hive productivity, and ultimately colony failure. To counteract this infection, Team UAlberta designed an Antifungal Porphyrin-based Intervention System (APIS) to treat Nosema infections in honey bees. APIS uses a modified heme biosynthesis pathway in Escherichia coli to overproduce protoporphyrin IX (PPIX), the eighth intermediate in the pathway. When ingested, PPIX-like molecules have been shown to decrease N. ceranae spore load in infected bees. Re-introducing the heme pathway in E. coli controlled by an inducible promoter overproduces PPIX using existing cell machinery. APIS allows bypassing of mechanisms regulating the endogenous pathway. Our system allows for directly introducing the bacteria into bees, as well as the mass production of PPIX in bioreactors.

UC Davis

Region: North America - United States
Section: Undergraduate
Track: Environment
Poster: Zone 3 - #171 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room310 - 3:15 PM - 3:45 PM

Cenozoic

Our project aims to develop mammalian-based biosensors for use in the context of environmental toxicology. Specifically, out biosensors have been designed to co-opt the mammalian cell's intrinsic stress response pathways and use these to trigger the production of a fluorescent reporter. We hypothesize that a device reporting on the activation of cell stress pathways will provide more physiologically and health-relevant information about the potential toxins present in an environment than bioassays which seek to simply measure the compound presence and/or abundance. That is, our bioassay asks not whether a compound is there, but rather whether compounds exist that may pose a health hazard. Our biosensors use mammalian-derived promoters of genes known to be activated in response to stress-inducing environmental pollutants. These promoters are coupled to a reporter gene (eGFP) and used in in vitro assays to report on the presence of compounds that elicit cell stress.

UC San Diego

Region: North America - United States
Section: Undergraduate
Track: Diagnostics
Poster: Zone 4 - #258 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room304 - 12:00 PM - 12:30 PM

Using unsupervised machine learning and synthetic biology to implement a novel, quantitative liquid biopsy test

In order to address key bottlenecks in liquid biopsy and noninvasive cancer detection techniques, our team focused on using epigenetic determinants for diagnostic purposes. Presented here is a novel workflow for diagnosing cancer by using promoter methylation as an indicator of interest. Key promoter regions of interest are first identified via unsupervised machine learning applied to the Cancer Genome Atlas via our in silico predictive tool. After this, our specially-designed assay can detect the presence of these hypermethylated regions of interest and provide a quantitative, fluorescent readout in order to generate clinical insight. Special advances in material science and microfluidics are then used to enhance the sensitivity and specificity of our assay. The workflow is then completed via integration into a smartphone application that provides the necessary data and helps streamline doctor-patient communication. Our proof of concept was centered around hepatocellular carcinoma.

UCAS-China

Region: Asia - China
Section: Undergraduate
Track: Open
Poster: Zone 2 - #111 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room312 - 3:15 PM - 3:45 PM

Rose Forest

A hundred years ago, a nightingale built a red rose for true love out of music by moonlight. Today, our E. coli uses light and music to create a colorful and fragrant rose forest for scientists and artists. Using three sensors to sense light of different wavelengths and intensity, and a RNAP system as resource allocator, our E. coli produces different proportions of three-primary colors responding to light and music, realizing the painting of full-color roses. By changing the output into scent genes, our roses can even emit various sorts of pleasant odors. Besides,we plan to make a collection kit to collect important genes related to light control and the color output of E. coli, which will be more convenient for future researchers. Integrating idealistic human feelings with logical genetic circuits, we aim to bring forth a new perception of combining art and science.

UChicago

Region: North America - United States
Section: Undergraduate
Track: New Application
Poster: Zone 2 - #91 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room310 - 9:00 AM - 9:30 AM

An iGEM-Optimized CEN Plasmid for E. coli and Pichia pastoris

Komatgella pastoris, otherwise known as Pichia pastoris, serves as an important industrial chasis organism for its ease of cultivation while also making post transcriptional modifications to eukaryotic proteins. Expensive and complex techniques, such as in vivo recombination, however remain a major bottleneck to developing transgenic P. pastoris lines. Centromeric plasmids developed for Saccharomyces cerevisiae overcome this bottleneck by providing the flexibility of plasmids with the stability of endogenous chromosomes. Here, we adapt the pSB1C3 iGEM backbone with a P. pastoris selection marker and various portions of the P. pastoris centromeric sequences to develop centromeric plasmids. We demonstrate by sectoring assay that these plasmids provide chromosome-like stability while maintaining the ease of use of an iGEM plasmid. This plasmid has major implications in the manufacturing of biologics.

UChile Biotec

Region: Latin America - Chile
Section: Undergraduate
Track: Environment
Poster: Zone 2 - #104 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room309 - 11:00 AM - 11:30 AM

Tenzyme Vilu - Aptazymes for biosensing marine toxins.

Last year during BiMaToX project we developed a novel biosensor based in aptazymes in order to detect paralytic toxins (saxitoxin) produced during harmful algal blooms (HAB). Tenzyme Vilu project will expand this goal to design a platform to obtain functional aptazymes for biosensing other marine toxins. For this, we have fully characterized adenosine monophosphate (AMP) aptazyme to further investigate aptazymes molecules as a diagnostic platform for other marine toxins. In order to improve the affinity of the aptazymes with its respective ligand, we have tested alternative sequences by using a rational design to avoid false negative or positive detections that can eventually arise when analysing raw samples. Then, by using our approach we developed novel aptazymes for sensing different HAB toxins, such as paralytic, diarrheic and amnesic shellfish toxins. Finally, a cell-free cellulose matrix device with different lyophilized aptazyme will be tested to evaluate the presence of different marine toxins.

UCL

Region: Europe - United Kingdom
Section: Undergraduate
Track: Manufacturing
Poster: Zone 2 - #136 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room208 - 12:00 PM - 12:30 PM

SETA - Silk Engineered Technology & Applications

Revolutions in synthetic biology are driven by effective and universal standardisations, which the biomaterial industry has not had… yet. Inspired by the idea of engineering modularity, we investigated an innovative technology that allows for more efficient and high-throughput manufacturing of environmentally-friendly biomaterials. We devised a plug-and-play framework using intein splicing to aid in both the polymerisation and functionalisation of biomaterials with a range of applications. Due to its durability, biodegradability, and kevlar-like strength, we opted for spider silk as a model to test our proposed system. While developing our platform, we conceived a BioBrick-compatible standard with improved flexibility that enables the integration of conventional cloning methods into iGEM’s workflow. Our split-intein system provides the manufacturing industry a modular and accessible polymerisation approach that can foster the next generation of biomaterials.

UCLouvain

Region: Europe - Belgium
Section: Overgraduate
Track: Therapeutics
Poster: Zone 3 - #211 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room207 - 2:15 PM - 2:45 PM

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UConn

Region: North America - United States
Section: Undergraduate
Track: Manufacturing
Poster: Zone 2 - #125 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room306 - 3:15 PM - 3:45 PM

Biological Alkane Synthesis through Shuttled Electron Transport

BASSET aims to engineer E. coli to produce biofuel (short-chained alkanes) in a microbial electrosynthesis (MES) system. For this year, BASSET produces alkanes from fatty acyl-ACPs. This aim is achieved by heterologous expression of Pmt1231 (from Prochlorococcus marinus) and Acr (from Clostridium acetobutylicum), overexpression of the endogenous FadK and a mutant TesA. The engineered organism is tailored for future use in a MES. In the MES, E. coli will accept electrons from an external source (for example, off-peak excess of solar energy). This energy will power the biosynthesis pathway by producing reducing equivalents such as NADH or NADPH in the cell.

UCopenhagen

Region: Europe - Denmark
Section: Overgraduate
Track: New Application
Poster: Zone 5 - #279 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room306 - 4:15 PM - 4:45 PM

PharMARSy: A novel system combining protein production and purification - keeping astronauts on mars healthy

Long-term space travel and colonization of Mars will require on-site production of pharmaceutical proteins to treat diseases, but current methods require expensive and bulky equipment. PharMARSy will develop a novel portable system that combines protein production and purification in a single step. To achieve this, we will hijack the bacterial type-3-secretion system (T3SS) that injects signal-tagged proteins through cell membranes. By constructing a device with two chambers separated by a membrane we direct our T3SS-bearing bacteria to inject target-proteins through the membrane and into a collection chamber. This method will separate the pure recombinant protein from the producing organism, facilitating purification. We will establish proof-of-concept using membranes in the form of liposomes, lipid-bilayers, onion cells and egg yolk. Furthermore, the two-chambered device will be 3D-printed. Our project will be developed further by integrating feedback from experts in space exploration, pharmaceuticals and bio-safety.

UCSC

Region: North America - United States
Section: Undergraduate
Track: Manufacturing
Poster: Zone 5 - #313 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room309 - 9:00 AM - 9:30 AM

Portable Progesterone Production in Yeast (PoPPY)

Women around the world lack adequate access to safe and affordable methods of contraception. The University of California, Santa Cruz (UCSC) iGEM team will create a safe, sustainable, and cheap progesterone-based contraceptive for all women, regardless of location or status. We will engineer the yeast Yarrowia lipolytica (Yali) to synthesize progesterone. Yali naturally produces a progesterone precursor, ergosterol. We will add five genes to the yeast genome to induce steroid hormone production by completing the progesterone biosynthesis pathway. We will insert these genes into Yali via three parallel experiments: Gibson cloning followed by homologous recombination, yeast-mediated cloning in Saccharomyces cerevisiae followed by Cre-lox recombination into Yali, and yeast-mediated cloning followed by Cre-lox into Yali. Following these experiments, we will monitor progesterone production to determine a safe, effective contraceptive dosage. On proper growth media, our self-replicating yeast biofactory will produce progesterone and provide a sustainable source of contraception.

UESTC-China

Region: Asia - China
Section: Undergraduate
Track: Energy
Poster: Zone 5 - #309 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room311 - 11:30 AM - 12:00 PM

Straw-Degrading Energy E.coli

With the development of agriculture, the yield of straw is huge, and it grows rapidly around the world every year. However, due to the complex structure of straw, current physical and chemical methods not only consume a lot of energy, but also create potential air pollution problems, while existing biological methods still require pretreatment by chemicals. Therefore, how to use straw effectively has become a problem we need to consider. Fortunately, we have found a bifunctional enzyme, xyn10D-fae1A from a paper, which directly decomposes straw and converts it into useful chemical raw materials – cellulose, lignin, ferulic acid and xylose. In addition, considering the energy shortage, we also convert cellulose to butanol and hydrogen to make more efficient use of cellulose.

UESTC-Software

Region: Asia - China
Section: Undergraduate
Track: Software
Poster: Zone 3 - #176 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room311 - 4:15 PM - 4:45 PM

BioMaster: An integrated bio-brick database

BioMaster is an integrated bio-brick database with the function of promoter prediction. We improved and standardized the information of bio-bricks in iGEM Registry by integrating information in databases like Uniprot, Epd, GO, etc. So BioMaster provides more comprehensive information about bio-bricks, including their functions, sites, interactions and references. With these, bio-bricks could be used and designed in a more reasonable way. Meanwhile, BioMaster offers more user-friendly searching methods. In addition, we provided a promoter prediction tool based on machine learning, in which promoter sequences can be found in unlabeled gene sequences. Via this tool, a promoter database predicted from E. coli genome was constructed, it contains a quantity of promoter sequences and information about the gene to which the sequences belong. We believe that this brand-new bio-brick database, BioMaster, can provide more conveniences for synthetic biologists.

UFlorida

Region: North America - United States
Section: Undergraduate
Track: Food & Nutrition
Poster: Zone 4 - #257 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room312 - 4:45 PM - 5:15 PM

Engineering Probiotic Escherichia Coli Nissle 1917 for Buytrate Production

Escherichia coli 1917 is a clinically approved therapy for various forms of inflammatory bowel disease. In order to apply synthetic biology approaches to potentially augment the probiotic and therapeutic potential of this bacterial strain, we decided to introduce a heterologous butyrate producing pathway into the bacteria. We decided to delete several genome genes involved in producing metabolites that drain carbon and reducing equivalents from theoretical butyrate production in a redox - balanced manner. Then, we synthesized two gblocks in order to assemble them together to form a biobrick encoding 5 enzymes involved in butyrate production. We also tested the function of past iGEM teams that have unsuccessfully attempted to produce butyrate. Our approach to metabolic engineering of E. Coli Nissle 1917 involved both genome editing and biobrick assembly, both of which are necessary to turn this strain into a therapuetic butyrate cell factory in the gut.

UGA

Region: North America - United States
Section: Undergraduate
Track: Food & Nutrition
Poster: Zone 5 - #310 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room310 - 12:00 PM - 12:30 PM

Development of Gal4/UAS Reporter Systems for use in Plants

The development of inducible expression systems in plants is imperative to the field of synthetic biology. The University of Georgia's 2018 iGEM team is expanding the iGEM registry's profile of plant promoters and reporters. Here we report a modified Gal4/UAS system. The Gal4/UAS system is an inducible promoter system native to yeast that utilizes the Gal4 transcription factor to activate genes downstream of a minimal promoter enhanced by an upstream activator sequence (UAS). We have created a 6X UAS repeat combined with a minimal 35S promoter to provide enhanced expression of reporter genes such as GFP, AmilC, and the apoptotic initiator from bell peppers, BS3, in the model organism, Nicotiana Benthamiana. The introduction of these expression systems to the iGEM registry will enable future iGEM teams to produce targeted expression in plants with ease using a binary vector system.

UI Indonesia

Region: Asia - Indonesia
Section: Undergraduate
Track: Diagnostics
Poster: Zone 2 - #134 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room309 - 11:30 AM - 12:00 PM

Finding Diphthy: Utilization of LuxAB-eYFP Resonance Energy Transfer System to Detect Diphtheria Toxin

Diphtheria is an infection caused by Corynebacterium diphtheriae, marked by pseudomembrane in posterior pharynx, potentially leading to respiratory tract occlusion and death. Recently, there has been diphtheria outbreak affecting major provinces in Indonesia. We realize the urgency of fast, reliable, and cheap early detection method for diphtheria infection to overcome this issue. Therefore, we plan to combine Escherichia coli Tar chemotaxis receptor with human heparin-binding EGF-like growth factor (HB-EGF) receptor so the bacteria can detect diphtheria toxin. In addition, we will combine CheA and CheY in E. coli chemotaxis pathway with LuxAB and eYFP, respectively. When in contact, LuxAB and eYFP will create resonance energy transfer system. Without diphtheria toxin, CheA will interact with CheY and thus LuxAB-eYFP energy resonance will happen, resulting in yellow color. With toxin presence, CheA will not interact with CheY and energy resonance will not happen, resulting in blue color (i.e. LuxAB native color).

UiOslo Norway

Region: Europe - Norway
Section: Overgraduate
Track: Diagnostics
Poster: Zone 1 - #43 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room208 - 9:00 AM - 9:30 AM

Canditect - Fast detection of vulvovaginal Candida albicans using CRISPR/dCas9

During their lifetime 75% of women will experience a Candida albicans infection, one of the most common vulvovaginal yeast infections. Currently there are no fast methods to detect whether an infection is caused by C. albicans. As a result, women purchase over-the-counter antimycotics without knowing the cause of their infection. This contributes to the rise of antimycotic resistance, making treatment of future infections more difficult. Based on previous projects, UiOslo_Norway aims to develop a fast detection kit for C. albicans infections, using CRISPR/dCas9. Upon a suspected infection, a vaginal sample will be treated with glucanase to selectively lyse yeast cells walls, exposing the fungal DNA. Afterwards, modified dCas9 enzymes fused with split β-lactamase are added. Using specifically designed guideRNAs, the dCas9 complexes bind adjacently on C. albicans specific DNA sequences. This activates the β-lactamase to cleave its substrate nitrocefin, producing a colored product indicating the presence of C. albicans DNA.

UIOWA

Region: North America - United States
Section: Overgraduate
Track: Manufacturing
Poster: Zone 1 - #35 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room306 - 11:30 AM - 12:00 PM

Investigating biosensors for the industrial production of 3-hydroxypropionic acid

Many industrial manufacturing processes revolve around the molecule 3-hydroxypropionic acid (3HP). This organic molecule can be used in a variety of industrial products, from biofuels to bioplastic production. While much research is focusing on maximizing the production of this important molecule, our team belongs to a smaller subset focused on finding ways to sense and measure its production. In a recent study, genes from the bacteria Pseudomonas putida were incorporated into Escherichia coli and demonstrated that re-purposed regulatory proteins from P. putida could be used as a biosensor for 3HP (Hanko et al. 2017). A separate study identified similar 3HP responsive genes in Pseudomonas denitrificans (Zhou et al. 2015). Our research team has transformed a promoter-regulator system that recognizes 3HP into Bacillus subtilis. B. subtilis is a hardy bacterium that has great potential as a 3HP producer for industrial processes and metabolic engineering experiments.

UIUC Illinois

Region: North America - United States
Section: Undergraduate
Track: Energy
Poster: Zone 3 - #207 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room311 - 11:00 AM - 11:30 AM

Symbiosis of Lactococcus lactis and Saccharomyces cerevisiae

We are exploring symbiotic co-culture of Lactococcus lactis, a lactic acid bacteria (LAB), and Saccharomyces cerevisiae, brewer's yeast, as a means to naturally produce lactic acid. This precursor is valuable for the synthesis of poly-lactic acid, a widely used biodegradable plastic. In many food and beverage industries, LAB is a common contaminant of yeast. This suggests that yeast and LAB form a complex microbiome where both species act in symbiosis. Studying the symbiotic relationship between yeast and LAB could increase carbon flux to the production of lactic acid. Co-culture dynamics have not been thoroughly studied, as a result, we obtained bacterial and yeast fluorescence reporter strains and performed a systematic analysis of co-culture dynamics, including optimization of media characteristics and ratios of initial cell numbers. We concluded the ideal co-culture media is a mixture of 1X YPD and 1X M17 media supplemented with 2% glucose.

ULaval

Region: North America - Canada
Section: Overgraduate
Track: Manufacturing
Poster: Zone 5 - #268 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room311 - 4:15 PM - 4:45 PM

Adrenayeast: Eco-Innovative Biosynthesis of Adrenaline in Saccharomyces cerevisiae

Adrenaline is an essential medication used to treat several conditions, including life-threatening anaphylactic reactions. However, the current chemical manufacturing processes struggle to keep up with the demand for adrenaline, often leading to shortages of potentially life-saving medicine. Our project aims to increase the molecule's availability by providing an eco-innovative alternative with milder operational conditions. We designed a two-plasmid system which harbors synthetic human cDNAs encoding the adrenaline enzymatic pathway. We explored how the insertion of this plasmid system into a Saccharomyces cerevisiae strain engineered to overproduce L-tyrosine can be used for the biosynthesis of adrenaline. As the enzymatic pathway also produces metabolic intermediates of biomedical interest, we intend to create three strains of Saccharomyces cerevisiae producing dopamine, noradrenaline or adrenaline, based on plasmid combination. Along with an optimized protocol to harvest purified products, we present our exploration of the social and ethical impacts of using this process to mass-produce adrenaline.

ULaVerne Collab

Region: North America - United States
Section: Undergraduate
Track: Environment
Poster: Zone 3 - #177 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room208 - 12:00 PM - 12:30 PM

A Bio-Solution to Plastic Pollution!

Every year, 8 million tons of plastic enter the ocean and can devastate the ocean's ecosystem. Many of these plastics are broken down into very small pieces called microfibers which are more harmful because they can be consumed by many organisms and negatively affect their health. Although the exact path from land to ocean is still unclear, we aim to remove the plastics from the wastewater level where plastic particles are known to accumulate. To eliminate these plastic particles from wastewater, we tested modified PETase enzyme that contains a unique catalytic site. To model our system, we aim to use a zero-energy requiring RAM pump design to hold our microbes and properly circulate the plastics and degrade them so plastic-free water can be released from the treatment plants and into the environment without any harm coming to the aquatic ecosystems.

UMaryland

Region: North America - United States
Section: Overgraduate
Track: Environment
Poster: Zone 1 - #40 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room302 - 4:45 PM - 5:15 PM

PETNET: A scalable solution for plastic bioremediation

Explosive worldwide increase in plastic production has led to extensive pollution from polyethylene terephthalate (PET) despite ambitious recycling efforts. PETNET uses several advances to address this issue. The recently discovered PETase from Ideonella sakaiensis is attached to a cellulose binding domain to increase PET degrading potential. The degrading efficiency of this protein is amplified with the integrated hardware featuring a cellulose-lined, modular flow reactor. The enzymatic activity of PETase is accelerated when immobilized near flowing PET substrate via interaction of linked CBD with the reactor's cellulose scaffold, allowing for feasible real-time PET degradation. Quantitation of PET degradation is accomplished with an evolved protocatechuate biosensor sensitive to micromolar concentrations of PET degradation byproduct. This approach circumvents the need for expensive instrumentation for the downstream detection of PET degradation. PETNET is a comprehensive approach to PET degradation that will offer a scalable platform for society to address the overwhelming accumulation of plastic.

UMass Dartmouth

Region: North America - United States
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 1 - #63 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room207 - 11:00 AM - 11:30 AM

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UNebraska-Lincoln

Region: North America - United States
Section: Undergraduate
Track: Environment
Poster: Zone 3 - #200 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room208 - 2:45 PM - 3:15 PM

Improving Early Detection of the Emerald Ash Borer

The emerald ash borer, Agrilus planipennis, is an invasive species native to Asia that first appeared in the United States in 2002. It has since spread to four Canadian provinces and thirty-five U.S. states, including Nebraska. The infestation is currently monitored with detection traps baited with the green leaf volatile (Z)-3-hexenol, which has been documented as an unreliable lure. The more effective bait, Phoebe oil and its most bioactive constituent 7-epi-sesquithujene, are commercially unavailable. Our team seeks to meet this challenge by building a bacterial cell factory to synthesize 7-epi-sesquithujene. We first introduced the mevalonate-dependent pathway into E. coli to enable the accumulation of the key biosynthetic precursor, farnesyl pyrophosphate. The maize terpene synthase gene tps4-B73 was then expressed in the engineered host. Accumulation of the target molecule by the constructed strain was confirmed by gas chromatography-mass spectrometry analysis. Future research will focus on product quantification and purification.

Unesp Brazil

Region: Latin America - Brazil
Section: Overgraduate
Track: Therapeutics
Poster: Zone 5 - #264 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room302 - 11:30 AM - 12:00 PM

Hope: a framework to engineer living therapeutics

Treatment of metabolic disorders often relies on pills and uncomfortable injections. Genetically engineered probiotics have the power to revolutionize drug delivery in a non-invasive way, by acting as living therapeutics in the human gut. To take this novel approach to its fullest potential, we designed a robust framework to engineer living therapeutics. Our framework provides an interchangeable and adaptable system to secrete and deliver a therapeutic polypeptide in response to an environmental signal, and a light-responsive biocontainment module based on the CRISPR/Cas9 machinery. Moreover, we designed and constructed a low-cost bioreactor system to simulate the human gut microbiome and validate our engineered probiotic. As proof of concept, we engineered a probiotic to treat type 1 diabetes that secretes insulin in response to glucose. Our framework aims to offer an easy, modular, robust and open-source solution to engineer and validate designer probiotics, bringing new hope to patients suffering from metabolic disorders.

UNSW Australia

Region: Asia - Australia
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 1 - #73 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room306 - 2:15 PM - 2:45 PM

Covalent attachment of enzymes to a self-assembling protein scaffold for substrate channelling

Metabolic engineering aims to produce complex high-value compounds for industry from simpler and cheaper substrates by enhancing rates of reaction. The rates of metabolic reactions can be greatly enhanced by substrate channelling, which spatially brings together the enzymes of a multi-step reaction, increasing the effective concentration of metabolic intermediates. We have designed a novel protein scaffold that specifically and covalently co-localises enzymes in a modular system. Our 'Assemblase' system consists of a heterohexameric complex of a highly thermostable and chemical resistant archaeal protein, prefoldin, which has been engineered to recruit enzymes using covalent protein-protein interactions. The design is being tested with a two step enzyme pathway to produce the horticultural plant hormone, indole 3-acetic acid, from tryptophan. We propose that the Assemblase system could be used for accelerating the production of pharmaceuticals and industrial chemicals, bioremediation and as a foundational research tool.

UofGuelph

Region: North America - Canada
Section: Overgraduate
Track: Food & Nutrition
Poster: Zone 2 - #161 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room312 - 9:30 AM - 10:00 AM

E. coli- and S. cerevisiae-Mediated Breakdown and Prevention of Beerstone via FRC, OXC and OxIT

Beerstone is calcium oxalate buildup that forms as a byproduct inside beer brewing equipment. Beerstone's high insolubility results in the need for highly corrosive chemicals such as nitric and phosphoric acids, combined with intense physical scrubbing for its removal. Oxalobacter formigenes is a human gut bacterium which solely metabolizes oxalate using enzymes Formyl-Coenzyme A Transferase (FRC) and Oxalyl-Coenzyme A Decarboxylase (OXC). Oxalate is taken into the cell by an oxalate-formate antiporter (OxIT), and following its metabolism, formate is exported from the cell by OxIT. We have investigated engineering E. coli and S. cerevisiae with these genes in order to characterize their activity and feasibility for use in an industrial setting. Tests included heterologous production of FRC and OXC in E. coli to characterize their activity against calcium oxalate, and modifying S. cerevisiae to utilize calcium oxalate using OxIT, FRC and OXC during the brewing process to prevent beerstone buildup.

UPF CRG Barcelona

Region: Europe - Spain
Section: Undergraduate
Track: Therapeutics
Poster: Zone 4 - #223 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room309 - 10:00 AM - 10:30 AM

Probiotics to fight metastasis: Engineering E. coli to regulate fatty acid metabolism

Prevention of metastasis remains a challenge for modern medicine. Recent experimental evidences indicate that metastasis development correlates directly on dietary long chain fatty acids (LCFA) intake, such as palmitic acid (PA). Hence, targeting fatty acid availability in the intestine could prevent cancer cells from spreading. Here a safe, effective and affordable solution is proposed by the design of a probiotic with increased LCFA uptake, GARGANTUA. We approached this by modulating the beta-oxidation family genes in E. coli. Moreover, we developed the first LCFA intracellular biosensor that does not interfere with its metabolism. This will provide a tool able to characterize LCFA uptake. We also developed a framework for the genomic integration of the uptake machinery, as a way to increase safety and robustness of our device. GARGANTUA provides a proof of concept for an alternative approach for metastasis prevention with potential applications in metabolic disease treatment.

Uppsala

Region: Europe - Sweden
Section: Overgraduate
Track: New Application
Poster: Zone 2 - #148 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room208 - 4:45 PM - 5:15 PM

Worm Busters - Fighting the hidden resistance

This year iGEM Uppsala has applied modern methods in novel ways to solve problems in a field largely untouched by synthetic biology. The purpose of the project is to use applied diagnostics to prevent overutilization of anthelmintics in horses by engineering a 'smart' bacterium. These bacteria would be able to report the presence of specific nematode parasites in a quantitative manner, allowing deworming treatments to be individualized for each horse depending on the level of infection. This would minimize the risk of future anthelmintic resistance, helping to stem the impending problem. Using synthetic biology to solve problems in veterinary diagnostics has presented many unique challenges to our team. These challenges have been overcome by development of new applications of existing techniques such as phage display, transcriptome sequencing using nanopore technology, and chromoprotein expression.

US AFRL CarrollHS

Region: North America - United States
Section: High School
Track: High School
Poster: Zone 3 - #199 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room302 - 11:00 AM - 11:30 AM

Engineering E.coli to detect and destroy biofilms

With growing environmental concerns, industries are increasingly relying on biofuels. Biodiesel storage tanks are susceptible to water infiltration that often results in biofilm formation containing bacteria and fungi. Biofilms may clog pipes, degrade fuel, or corrode storage tanks. We set out to engineer a 'seek, aim, and destroy' system for the remediation of microbial biofilms. Pseudomonas aeruginosa, commonly found in fuel biofilms, releases the quorum sensing molecule C4-HSL. Our engineered E. coli cells express CheZ protein in response to a concentration gradient of C4-HSL to activate the flagella motors and propel the cells towards the biofilm. In addition, the engineered E. coli expresses chitinase on its surface and secretes cinnamaldehyde. Chitinase breaks down chitin in the fungal cell walls, increasing the ability of cinnamaldehyde to destroy the fungi. Cinnamaldehyde also eliminates bacteria, thus remediating the biofilm. (DISTRIBUTION A: Approved for public release; distribution unlimited. 88ABW-2018-3904. 01 August 2018.)

USAFA

Region: North America - United States
Section: Undergraduate
Track: Therapeutics
Poster: Zone 4 - #245 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room208 - 2:45 PM - 3:15 PM

Ops Normal: a novel protein sequestration sequence to prevent a phenotypic switch in Candida albicans

Candida albicans is a fungus that, despite being considered part of normal human flora, has the potential to cause life-threatening systemic infections, with candida infections being the fourth leading cause of hospital acquired systemic infections and resulting in mortality rates of up to 50%. Candida albicans becomes pathogenic after a phenotype switch from white-to-opaque or opaque-to-white, depending on the infection site. Here, we cloned the 5' UTR of the master white-opaque phenotypic regulator WOR1 into a vector to act as a protein sequestration sequence. To confirm successful cloning of the 5' UTR and expression of our vector, we used E. coli as our model organism. Once integrated into the Candida albicans genome, our genetically engineered part should sequester transcriptional regulating proteins away from the WOR1 gene and alter the phenotypic switching tied to the pathogenicity of Candida albicans.

USMA-West Point

Region: North America - United States
Section: Undergraduate
Track: Manufacturing
Poster: Zone 3 - #206 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room312 - 11:00 AM - 11:30 AM

Developing bacterial mammalian olfactory system-based chemical biosensors

Artificial bio-sensors based on the mammalian olfactory system are potentially powerful chemical analytical systems for many industrial, medical and security applications. The ability to express mammalian proteins make bacteria a potentially powerful platform for developing artificial chemical biosensors. Bacteria, however, lack several of the intracellular signaling proteins required to alter cell membrane field potential changes in response to odorant binding. To overcome this challenge, we have developed a plasmid containing a synthetic bacterial operon that enables the expression of multiple genes under the control of the upstream regulatory promoter for the AraC gene. In this proof-of-principle system, synthetic operon will be expressed in E.coli with a separate plasmid that co-expresses a human odorant receptor protein. These studies will provide the foundation for future work to develop synthetic operons can be used to heterologously express the multiple proteins required to develop bacterial chemical biosensors based on the mammalian olfactory system.

USP-Brazil

Region: Latin America - Brazil
Section: Overgraduate
Track: Foundational Advance
Poster: Zone 3 - #194 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room310 - 5:15 PM - 5:45 PM

QS-Comms

Quorum sensing is a mechanism for communication within and between bacterial populations, and it presents interesting possibilities for biotechnology in controlling populational behavior, ranging from task division in bioprocesses to biofilm disruption in infections. However, to generate complex patterns in a predictable manner, orthogonality between different quorum sensing pathways is essential, so the toolkit of quorum sensing parts needs to be thoroughly characterized, expanded and optimized so that this technology may see its full potential. Thus, our project aims to characterize activity and quantify the genetic crosstalk between a variety of quorum sensing systems that showed promising activity in prior works, while also using this information to predict, model and ultimately aid possible design applications and solutions for microbial communication. This way we will build on a growing bank of data of quorum sensing parts that will help future projects work with this technology.

USP-EEL-Brazil

Region: Latin America - Brazil
Section: Undergraduate
Track: Environment
Poster: Zone 1 - #39 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room207 - 12:00 PM - 12:30 PM

Lacquase: Biodegradation of estrogens from water

The detection of endocrine disruptor chemicals (EDCs) in water bodies is increasing. These compounds, also known as estrogens, are highly toxic to fish and may cause long-term harmful effects in humans and other animals.The lack of effective treatment of effluents to remove these micro pollutants has led to the contamination of water reservoirs and pollution of the environment. Our team's proposal was the development of a method for the removal of these estrogens from water. To achieve this goal, we cloned and expressed genetically engineered laccases from filamentous fungi in E. coli strains. Laccases are copper-containing enzymes that act in the oxidation of a various range of phenolic substrates, including EDCs. We plan to explore laccases as model environmental friendly biocatalyzers applied in the biodegradation of estrogenic compounds in water and effluent treatment stations, which can greatly improve water quality.

UST Beijing

Region: Asia - China
Section: Undergraduate
Track: Food & Nutrition
Poster: Zone 5 - #276 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room311 - 3:15 PM - 3:45 PM

Natural RE-lease

Our long-term goal is to improve the health-promoting effects of ginsenosides. We believe that sterols in the ginsenosides are responsible for their main benefits. Therefore in the past projects we engineered synthetic squalene cyclase for in situ production of ginseno-sterols in human cells; and produced synthetic β-glucosidase in E.coli for removal of sugar from ginsenosides. In the current strategy, in the wake of “No release” policy of iGEM community, we are able to by-pass synthetic biology methods to achieve our goal by applying in vitro chemical reactions.

USTC

Region: Asia - China
Section: Undergraduate
Track: Manufacturing
Poster: Zone 3 - #181 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room311 - 5:15 PM - 5:45 PM

Make TW Beneficial

In China, tobacco industry is under government's control. To prevent some people from illegally making cigarettes with TWs (tobacco wastes), especially small pieces of tobacco, TWs are all recycled to dispose. The usual way of TW's disposal is to burn, which produces pollution like CO, and nicotine in TW will spread in the air, causing huge waste. Faced with the phenomenon that nicotine in TW is difficult to use, we propose our project to make nicotine in TW beneficial by degrading nicotine to valuable chemicals. We use 3 enzymes: NicA2, PNAO, SAPD to convert nicotine to 3-succinoyl-pyridine, a valuable medicine. And then, we design a nicotine biosensor, combined with LuxR-AHL-lux pR system to activate expression of the degradation enzymes. Furthermore, to lower the harm of Secondhand Smoke, we devise our hardware using bacterial cellulose to absorb nicotine in air for recycling. We believe our project will make TW beneficial!

USTC-Software

Region: Asia - China
Section: Undergraduate
Track: Software
Poster: Zone 2 - #115 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room304 - 4:15 PM - 4:45 PM

Biohub 3.0

Biohub 3.0 is a powerful Synthetic biology platform devoting for efficient working and sharing. Inspired by some weblog sites, it introduces a communication platform for Synthetic biology researchers to share ideas and experimental programs. When coming up with an idea, one can immediately build a specific basic experimental process and share it with Biohub. Experimental programs can be stored and demonstrated in the cloud. Researchers can focus on the content and won't be distracted by the annoying format. More than a community, the platform is also a well-designed kit for Synthetic biology, providing a powerful search engine for researchers. Massively useful information in daily research is covered. Biohub can be a reliable and powerful software for Synthetic biology researchers all over the world.

UT-Knoxville

Region: North America - United States
Section: Undergraduate
Track: Environment
Poster: Zone 2 - #124 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room309 - 11:30 AM - 12:00 PM

Engineering E. coli for Dichloroacetate and Dichloromethane Degradation

Chemical pollution resulting from large-scale industrial practices can result in volatile organic compound (VOC) accumulation in water supplies. One VOC of interest, dichloroacetate (DCA), is a chlorinated carcinogenic contaminant at clinically high levels. Similarly, dichloromethane (DCM), is used for various industrial applications but its accumulation in water systems poses a threat to aquatic organisms and is considered a carcinogenic to humans. The goal of the UT Knoxville iGEM Team is to design biological systems in E. coli capable of degrading DCA and DCM in order to remove them from the water supply and metabolize them within the cell. Through the addition of Haloacid Dehalogenase (HADase) genes capable of breaking down DCA as well as the development of a DCM biosensor, we are generating biological organisms in order to facilitate our access to clean drinking.

Utrecht

Region: Europe - Netherlands
Section: Undergraduate
Track: Environment
Poster: Zone 4 - #251 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room207 - 2:45 PM - 3:15 PM

DeTaXion: a synthetic biology-based biosensor to detect environmental pollutants

Water is one of our most precious resources. Unfortunately, increased use of chemicals such as pharmaceuticals threatens this ecosystem. These contaminants are often difficult to detect. We therefore developed Detaxion, a biosensor to rapidly identify chemical contaminants in water. Detaxion is based on the E. coli chemotaxis system. We engineered the CheY and CheZ chemotaxis proteins to form a bioluminescence resonance energy transfer (BRET) pair. Upon binding of chemicals to the TAR chemotaxis receptor, BRET fluorescence emission changes in a quantifiable manner. We additionally used receptor ligand binding domain swapping to expand the range of detectable chemicals. Finally, we modified receptor methylation sites to extend the detection range. Our results thus far show successful fluorescence energy transfer. Moreover, we used a capillary-based assay to confirm BRET measurements. Taken together, Detaxion constitutes a synthetic biology-based approach to detect chemical waste in water, to safeguard this vital resource.

Valencia UPV

Region: Europe - Spain
Section: Undergraduate
Track: New Application
Poster: Zone 5 - #306 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room304 - 11:00 AM - 11:30 AM

Printeria

Access to Synthetic Biology by the interested layperson is currently hampered by several barriers, including a required background knowledge and availability of expensive and often bulky technological equipment. Printeria, a fully-equipped bioengineering device able to automate the process of printing genetic circuits in bacteria but made as simple and easy to operate as a domestic desktop printer, breaks down these barriers. It uses a digital microfluidic system creating little droplets that can be mixed and moved across predefined electrode paths on a PCB surface. Printeria combines this novel system with Golden Gate Technology, low-cost sensors and electronics, and a user-friendly software application. This way, the user is capable of assembling domesticated DNA parts in a one-step reaction and can control all biotechnological steps, from the assembly of parts and transformation to cell culture, with high accuracy. Printeria opens the door to a world of applications affordable for the general public.

Vilnius-Lithuania

Region: Europe - Lithuania
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 1 - #65 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room208 - 10:00 AM - 10:30 AM

SynDrop - Synthetic Droplets for Membrane Protein Research

Membrane proteins (MPs) are an essential part of major cellular processes and key targets for drug development. Since distinct obstacles, including cell-toxicity and irreversible aggregation in hydrophilic environment impede MP research, we employ microfluidics and bottom-up forward engineering approach to revolutionize it. Octanol-assisted liposome assembly is implemented for synthesis of monodisperse cell-sized liposomes. We encapsulate modified MP assembly machinery alongside cell-free protein synthesis system within liposomes with excellent efficiency. This system serves as overarching framework for effective synthesis, folding, and competent insertion into the membrane of active prone-to-aggregate membrane proteins. We offer a full-synthetic microfactory that, coupled with directed evolution, solves contemporary problems in MP engineering. Additionally, synthetic liposomes enable building artificial logic gates and signaling pathways to study metabolic cascades and protein interaction completely noise-free. Utilizing liposomes as simplified synthetic models of living cells, SynDrop will facilitate scientists to step into fully controlled synthetic era of membrane protein research.

Vilnius-Lithuania-OG

Region: Europe - Lithuania
Section: Overgraduate
Track: Foundational Advance
Poster: Zone 5 - #272 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room312 - 11:30 AM - 12:00 PM

CAT-Seq: Catalytic Activity Sequencing

Biological part characterization is the core requirement for engineering complex, yet predictable biosystems. The immense complexity of nature makes this a challenging task. Currently, there is a considerable lack of well-defined, standardized parts and an insufficient grasp of their sequence-function relationship. Notably, state of the art screening methods have insufficient throughput to effectively navigate the extensive biomolecule sequence space. To address this issue we have developed a novel approach to part characterization based on microfluidics and modified nucleotides: Catalytic Activity Sequencing (CAT-Seq). CAT-Seq enables the simultaneous activity measurements of billions of biomolecule variants in parallel. Unique biomolecules are each synthesized in separate water droplets and their activity is recorded and stored into their individual DNA sequences. This information can then be readily retrieved by next-generation sequencing. CAT-Seq can rapidly assess sequence-function relationships, characterize regulatory parts, their interactions, and provide much-needed data for predictively designing novel biological systems.

Virginia

Region: North America - United States
Section: Undergraduate
Track: Manufacturing
Poster: Zone 4 - #220 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room207 - 10:00 AM - 10:30 AM

Quorus: Engineering a Microbial Symphony

Quorum sensing (QS) is a mechanism where bacteria detect the presence of nearby cells and coordinate their behavior among the population. Utilizing the QS genes of the Lsr operon and T7 RNA Polymerase, we are developing a biologically orthogonal quorum response sensitive to the universal autoinducer AI-2. This system introduces an alternative method of gene induction and biomanufacturing to iGEM, re-engineering microbial coordination of population phenotypes. Further, we have designed a synthetic feedback loop in tandem with the Lsr operon to increase the mean and homogeneity of quorum activation in a colony to levels comparable to industrial inducers like IPTG. This provides a system of self-regulating induction that can produce target proteins cheaper and more efficiently than current industrial methods. The resulting engineered microbe has increased biofilm production compared to the wild type, which has applications such as microbial cellulose biomanufacturing and hyper-virulent control organisms for testing certain microbial antibiotics.

VIT Vellore

Region: Asia - India
Section: Undergraduate
Track: Environment
Poster: Zone 5 - #289 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room309 - 9:00 AM - 9:30 AM

Toggle pH: Engineered micro workers for ocean pH homeostasis

Increase in industrialization has led to an overall increase in Carbon Footprint, the major component of which is Carbon Dioxide, leading to global warming. Among other ill effects of industrialization, the one that has garnered a lot of attention is what we call Ocean Acidification also known as 'the other CO2 problem'. Increasing acidity is directly linked to having potentially harmful consequences for marine organisms, such as depressing metabolic rates and immune responses in some organisms, and causing the worst cases of coral bleaching. In order to tackle these problems our engineered microbe jumps in. This engineered E. coli will interact with it's surrounding environment to utilize protons whose levels regulate activation of certain pH-sensitive promoters. Along with promoters, specific repressor protein-operator binding regulates gene expression so that the transporter proteins are expressed which shuffle bicarbonates, carbonates and protons in and out of cells that bring about pH homeostasis.

Warwick

Region: Europe - United Kingdom
Section: Undergraduate
Track: Environment
Poster: Zone 3 - #182 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room312 - 9:00 AM - 9:30 AM

Safe Water

Safe water is a global issue. Our team provides solutions to biological, organic and inorganic problems facing polluted water. Biological: The Legionella genus of Bacteria causes disease in humans. We utilise a never before seen regulation system to identify and respond to pathogenic RNA. Organic: Toxic oestrogen concentrations induce sex reversal in fish; the inability for breeding due to lack of males results in population decline. We have artificially tweaked and transferred a recently discovered enzyme pathway into E.Coli which reduces oestrogen toxicity. Inorganic: Lead contamination is responsible for serious health problems. We have designed a system through which lead can be isolated and removed via gas vesicles in Bacillus.

Washington

Region: North America - United States
Section: Undergraduate
Track: Foundational Advance
Poster: Zone 1 - #23 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room304 - 10:00 AM - 10:30 AM

Stronger Together: An efficient, generalizable approach to design biosensors for small molecules

Chemically induced dimerization (CID), in which two proteins dimerize only in the presence of a small molecule, has been widely used to control cell signaling, regulatory, and metabolic pathways, and used as logic gates for biological computation in living mammalian cells. However, few naturally occuring CID systems and their derivatives are currently available. Creating a CID system with desired affinity and specificity for any given small molecule remains an unsolved problem for computational design and other protein engineering approaches. To address this challenge, we have used a novel strategy to select CID binders from a vastly diverse combinatorial nanobody library. We have created new CID systems that can sense cholecalciferol and artemisinin. We are validating CID biosensors by a yeast three-hybrid system and built structural models to understand the small molecule-induced dimerization. Our work is a proof-of-concept that can be generalized to create CID systems for many applications.

WashU StLouis

Region: North America - United States
Section: Overgraduate
Track: Food & Nutrition
Poster: Zone 2 - #151 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room310 - 11:00 AM - 11:30 AM

DETECTING WHEAT RUST FUNGUS SPORES USING E. COLI AND S. CEREVISIAE

Virulent races of Puccinia graminis f. sp. tritici (Pgt), or wheat stem rust, have caused devastating effects on cereal grains worldwide, impacting global food security. We are engineering Escherichia coli DH5α and Saccharomyces cerevisiae EBY100 to detect Pgt and improve response times to virulent strains. To detect Pgt, we are creating a device that will germinate spores from the Puccinia genus. The germinated spores produce ribitol, a sugar unique to Pgt. Our engineered DH5α will produce a fluorescent signal in the presence of ribitol, thus detecting Pgt. To detect specific virulent races of Pgt, we will modify yeast to contain the stem rust resistance gene Sr35 from Triticum monococcum. Sr35 recognizes its corresponding effector AvrSr35, secreted by Pgt, as part of the plant’s innate immune system. Using bimolecular fluorescence complementation, our yeast will detect AvrSr35, a first step in being able to indicate the virulence of the germinated Pgt spores.

Waterloo

Region: North America - Canada
Section: Undergraduate
Track: New Application
Poster: Zone 1 - #68 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room304 - 12:00 PM - 12:30 PM

E. co-light: Dynamic Optogenetic Control of Co-cultures

Microorganisms exist in complex and diverse communities. This enables a variety of important interactions including co-metabolism and nutrient cycling. Yet, it can be difficult to culture species together in a laboratory setting. Mixed populations are difficult to maintain primarily due to competition: a difference in growth rates often results in one population outcompeting another. Our team aims to dynamically control E. coli growth by using optogenetics (light-induced gene expression) to regulate the production of MetE, an enzyme essential for bacterial growth. This kind of control could help us overcome a major barrier to maintaining co-cultures: competition between microorganisms. This would open several doors in biotech and research. For instance, metabolic engineering of microbial communities may improve the production of pharmaceuticals, biofuels, and other important materials. Moreover, controllable co-cultures would allow researchers to explore complex interactions between microbes and investigate questions that could not previously be answered due to co-culturing limitations.

Westminster UK

Region: Europe - United Kingdom
Section: Undergraduate
Track: Environment
Poster: Zone 1 - #66 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room310 - 2:45 PM - 3:15 PM

Facilitating styrene biodegradation through modification of the tod operon

While waste plastics are a major environmental concern, polystyrene is one of the least recycled and is amongst the most polluting plastics. We investigated the impact of polystyrene and evaluated chemical methods of reducing its expanded volume using citrus waste chemicals followed by thermal depolymerisation. Methylbenzene (toluene) is metabolised in Pseudomonas putida F1 through the Tod operon, a class of genes which facilitate the transport and metabolism of toluene. Our goal is to use the tod operon to facilitate the biodegradation of styrene monomers. One critical enzyme, the 3-methylcatechol 2,3-dioxygenase (todE) was reported to encounter inactivation by 3-vinylcatechol intermediate of styrene biodegradation thus, our aim is to up-regulate todE in our composite biobricks while computationally modelling it. If successful, these genetic modifications could be applied back to P. putida F1 for more efficient growth on waste styrene on an industrial scale, with the possibility of useful intermediate collection.

WHU-China

Region: Asia - China
Section: Undergraduate
Track: Environment
Poster: Zone 5 - #314 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room208 - 11:30 AM - 12:00 PM

Noah's Ark I - Polyphosphate planet

This year we aim to establish a brand new system of environmental remediation and maintenance in water. Owing to leakage or improper discharge, there are high levels of many chemicals in the water body causing water pollution like eutrophication. To deal with this, we established a set of pathways, used the symbiotic system of algae and our engineered bacteria and finally built an device as platform that can carry them—The Noah’s Ark. The Ark can make use of solar energy and continuously collect specific element or chemical agents from water to achieve the water restoration, as well as reusing the purified chemicals as resources!As an experiment, we used the Ark to recover phosphorus this year. Thus, the first product of a whole series was launched:Noah’s Ark I—Polyphosphate planet.

William and Mary

Region: North America - United States
Section: Undergraduate
Track: Information Processing
Poster: Zone 5 - #280 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room306 - 9:30 AM - 10:00 AM

Construction of a decoding circuit to process dynamic frequency-encoded information

One of the most ubiquitous forms of information processing in cellular systems is one in which information is encoded in the time-domain dynamics of signals. Although there exist synthetic circuits capable of encoding information in the time-domain of gene expression, the field lacks circuits that can decode time-domain information. As a result, synthetic circuits are incapable of processing time-domain information, rendering them unable to interface effectively with dynamically encoded cellular signals. To address this problem we created a decoder circuit that uses an incoherent feed-forward loop to convert frequency-encoded information into amplitude-encoded information. Through modeling and experimentation we demonstrate that our IFFL decoder allows synthetic circuits to more accurately process information encoded in the frequency of an oscillatory signal. Our decoder therefore provides a means for teams to design and build synthetic circuits that can better interface with endogenous signaling pathways to access the broad possibilities of time-domain information processing.

WLC-Milwaukee

Region: North America - United States
Section: Undergraduate
Track: Environment
Poster: Zone 4 - #213 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room310 - 9:30 AM - 10:00 AM

Ec-Sense

Fresh water is an increasingly valuable resource in our world where the needs of a burgeoning population are complicated by rapid urbanization. Water contamination and a lack of water security affects millions of people worldwide every year, especially in at risk communities, resulting in illness and transmission of deadly parasites. Unfortunately, ensuring water safety is expensive and time consuming with few testing options available. The WLC-Milwaukee iGEM team has been continuing past work to develop a simple, accurate, and fast test kit for E. coli providing consumers the tools they need to ensure water safety. We have been working with proteins from Lambda phage known to bind the outer membrane protein, LamB, of E. coli conjugated to HRP. This protein-enzyme conjugate binds E.coli and when a colorimetric substrate is used, an easy to read visual signal indicates the presence of E. coli and fecal coliform contamination.

Worldshaper-Wuhan

Region: Asia - China
Section: High School
Track: High School
Poster: Zone 5 - #283 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room208 - 4:15 PM - 4:45 PM

Long noncoding RNA IL7-AS promotes cell migration in renal cell carcinoma

Renal cell carcinoma (RCC) is the most common type of kidney cancer in adults. Patients with RCC typically respond poorly to conventional treatment with chemotherapy and radiotherapy. A better understanding of the molecular mechanisms underlying RCC progression, including metastasis, is required to improve RCC treatment. LncRNAs have been shown to have crucial roles in carcinogenesis and metastasis. LncRNA IL7-AS is a newly discovered lncRNA, which has been suggested to be associated with innate immunity. We first examined the expression pattern of IL7-AS in tumor tissues compared with normal tissues via mining various available public data sets, which has suggested IL7-AS may play an important role in carcinomas, especially in renal cell carcinoma. Our project will clone the different splices of IL7-AS and investigate the role of IL7-AS in renal cell carcinoma. Our studies may reveal that IL7-AS is a potential diagnostic biomarker and therapeutic target for renal cell carcinoma.

Worldshaper-XSHS

Region: Asia - China
Section: High School
Track: High School
Poster: Zone 1 - #67 - Saturday - Session I & J - 12:45 PM - 2:15 PM
Presentation: Saturday - Room311 - 11:00 AM - 11:30 AM

Microbial Sensor for Nicotine Capture

Tobacco consumption is one of the leading preventable causes of death and disease in the world. Nicotine, a major toxic component of tobacco, can cross biological membranes and the blood-brain barrier easily. During cigarette manufacturing, large quantities of tobacco waste with high concentrations of nicotine are produced, and the disposal of these wastes is a serious ecological problem. Microbial organisms play important roles in the tobacco manufacturing process by altering the content of nicotine. Some strains of Pseudomonas exhibits high nicotine-degrading activity, which has a gene cluster encoded enzymes involved in the catabolism of nicotine. In this project, we are aiming to explore a better way to nicotine detection and degradation. The Escherichia coli strains was constructed to easily detect the concentration of nicotine using synthetic biological methods. Meanwhile, over-expressing the key enzyme genes for nicotine bioremediation is also in progress.

WPI Worcester

Region: North America - United States
Section: Undergraduate
Track: Food & Nutrition
Poster: Zone 5 - #300 - Thursday - Session A & B - 12:45 PM - 2:15 PM
Presentation: Thursday - Room312 - 9:00 AM - 9:30 AM

ICEberg (ISPs Combatting EPSs)

Approximately 48 million people contract a foodborne illness in the United States each year. Many of these outbreaks are linked to field crops contaminated with pathogenic bacteria. Inspired by the 2018 romaine lettuce E. coli outbreak in the United States and the work of the 2015 WPI iGEM team, we investigated methods to prevent biofilms of human pathogens on crops. We analyzed the antimicrobial properties of antifreeze proteins, also called ice structuring proteins (ISPs), and curcumin, a component of turmeric. The biofilms were measured by the amount extracellular polymeric substances (EPSs) they produced using crystal violet binding assays. On lettuce leaves, biofilms were quantified by their colony forming units. We also constructed a gene gun, based off the 2016 Cambridge iGEM team's design, to transform lettuce leaves to express antifreeze proteins. In the future, we envision transgenic crops that produce antimicrobial proteins to protect themselves against colonization of human pathogens.

XJTLU-CHINA

Region: Asia - China
Section: Undergraduate
Track: Therapeutics
Poster: Zone 3 - #189 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room302 - 12:00 PM - 12:30 PM

EXOport: A CNS-targeting mRNA-packaging exosome device

In recent decades, scientists have advanced various drug delivery modalities to overcome the blood-brain barrier (BBB), which excludes most neurotherapeutics from entering the central nervous system (CNS), in order to treat CNS disorders. The emerging brain virotherapy using AAV vectors was reported to be immunogenic and costly in manufacturing. In addition, it is rather perilous that therapeutic viruses have to be administered into cerebrospinal fluid. Hence, this year, our team aims to engineer HEK293T cells to produce engineered exosomes, which are extracellular vesicles naturally capable of traversing BBB, hereby providing a low-risk platform for CNS mRNA therapy . The engineering includes: 1. boosting the production of exosomes; 2. facilitating therapeutic RNA to be packaged into exosomes; 3. increasing targeting specificity to neurons with low leakage during the transport of RNA cargo 4. prolonging the expression of therapeutic RNAs in the neurons

XJTU-China

Region: Asia - China
Section: Undergraduate
Track: Manufacturing
Poster: Zone 3 - #202 - Saturday - Session K & L - 6:45 PM - 8:15 PM
Presentation: Saturday - Room208 - 4:45 PM - 5:15 PM

DEcose: A Biosensor-based Directed Evolution Method in Promoting D-psicose Productivity

D-psicose, the C-3 epimer of fructose, is a natural rare sugar that is low in energy, which exerts several potential health benefits, including preventing diabetes development. Bioproduction of D-psicose shows promise but suffers severely from low enzyme activity. Directed evolution (DE) is an effective strategy for optimizing various enzymes. However, high throughput is never achieved when screening manually or using conventional methods such as HPLC to monitor metabolite concentration. To overcome such difficulties, we have constructed the Sensing, Coupling, Selecting and Iterating framework of DE with quantitative regulatory mechanisms underlying each step. D-psicose productivity is first converted into mRNA expression level, then couples with genes conveying survival advantages by tunable hairpin cassette. The procedure iterates itself in evolving more effective enzymes. This framework for DE could hopefully be applied to improve the functionality of other biomolecules, as long as a suitable biosensor for the final product exists.

XMU-China

Region: Asia - China
Section: Undergraduate
Track: New Application
Poster: Zone 2 - #105 - Friday - Session E & F - 12:45 PM - 2:15 PM
Presentation: Friday - Room310 - 12:00 PM - 12:30 PM

Cell-free Systems for Disease Detection and Treatment

This year team XMU-China developed cell-free systems to detect and treat diseases. Protein detection is unique and significant in biology fields, especially for the detection of protein biomarkers which produced by diseased cells. In order to overcome the deficiencies of traditional detection methods, we have developed an Aptamer Based Cell-free Detection system (ABCD system) of protein. The core of the ABCD system is the specific binding of the aptamer and its target protein. After protein detection, we use outer-membrane vesicles (OMVs) to treat the diseased cells. We designed a system that has realized the efficient, customizable production of OMVs, which serves to encapsulate specific siRNA for disease treatment. To guarantee the practicability detection and treatment system, we also improved KaiABC system and TDPs system to regulate the expression rate of OMVs and store fragile chemicals or biological materials.

Yale

Region: North America - United States
Section: Undergraduate
Track: Environment
Poster: Zone 1 - #81 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room207 - 4:15 PM - 4:45 PM

Engineering a synthetic bacterial co-culture to degrade and metabolize PET plastics

Polyethylene terephthalate (PET) is a polymer used to make plastic products ranging from synthetic fibers to water bottles. Large amounts of PET end up accumulating in the environment as pollution. A bacterium named Ideonella sakaiensis was found to degrade PET by using two enzymes, PETase and MHETase, to break PET into two monomers: ethylene glycol (EG) and terephthalic acid (TPA). However, I. sakaiensis' inability to breakdown PET on a practical time scale undermines its usefulness in eliminating PET pollution. Our project aimed to tackle PET pollution by engineering a synthetic Escherichia coli and Aceintobacter baylyi co-culture to degrade and metabolize PET. Since both E. coli and A. baylyi are more characterized than I. sakaiensis and also capable of high-throughput mutagenesis, PET degradation and metabolism pathways in an engineered synthetic E. coli and A. baylyi co-culture potentially could be optimized to be more efficient than those natively found in I. sakaiensis.

ZJU-China

Region: Asia - China
Section: Undergraduate
Track: New Application
Poster: Zone 5 - #311 - Thursday - Session C & D - 6:45 PM - 8:15 PM
Presentation: Thursday - Room310 - 2:45 PM - 3:15 PM

A Detector - A Framework of Multi-enzyme Assembly

Injuries–resulting from traffic collisions, drowning, falls or burns - and violence - from acts of war–kill more than 5 million people worldwide annually and cause harm to millions more. A waste of prehospital time led to high mortality. In response to these situations, ZJU-China developed A Detector for point-of-care testing (POCT), a manufacturing platform for other biosensors. Developers can assemble customized enzymes with Tag/Catcher labels in the expected order and immobilize them on a biocompatible matrix of curli fibers. In traumatic shock detecting, a triple-enzyme complex is constructed and performs as a logic gate to integrate two clinical parameters on molecular level. The result is exported through redox reaction on electrodes. Besides, in silicon machine learning is used to build a bridge between real clinical data and currents in our design. In brief, we propose an innovative new application by introducing A Detector, a Tag-Enzyme-Catcher assembly for fast response.

ZJUT-China

Region: Asia - China
Section: Undergraduate
Track: Environment
Poster: Zone 5 - #307 - Friday - Session G & H - 6:45 PM - 8:15 PM
Presentation: Friday - Room310 - 4:15 PM - 4:45 PM

LiGEM-DARG: Light-controlled Genetic Engineering Machine for Degrading Antibiotic Resistance Genes

Due to antibiotic resistance genes (ARGs), microbial infections are increasingly difficult to be treated with antibiotics. The spread of ARGs has become a global challenge. Eliminating ARGs of microbes (e.g. from fermentation industry or laboratories) can reduce the amount of ARGs in the environment. To this end, we developed a light-controlled genetic engineering machine for degrading ARGs, which is comprised of the following modules: 1) To cleave an ARG, Cas9 was expressed under the control of arabinose promoter and guided by the sgRNA which targets at the ARG. 2) To control the expression of Cas9 through light, the efficiency of the light-controlled part was measured with eGFP as reporter. 3) To reduce leaky transcription of sgRNA, the arabinose-controlled repressor LacI was constructed and evaluated with eGFP. 4) A module for cell lysis was constructed to disrupt cells after eliminating the ARG. Together, we provided a novel strategy for controlling ARGs.